BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019610
(338 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 330 bits (847), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 206/413 (49%), Positives = 242/413 (58%), Gaps = 114/413 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVD KD + K + D+++ FGK SK
Sbjct: 790 MNKASLERGMFRSEQIRSYKAEVDAKDSE-KRKKMDELVQFGKTHSKIGKVDSLEDDGFP 848
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIG+ E GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ
Sbjct: 849 FIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ---- 904
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTP QLLEAA
Sbjct: 905 VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 964
Query: 132 LGKG-ACD-----------GLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNSG 176
L KG AC L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 965 LSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGE 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++RS+IF TFYQ+ +HMSEDKVKFRNTG PL
Sbjct: 1025 -------------------------MMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPL 1059
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +PVADRKRFGGI+FGEM+ DCLIAHGAS NLHERL KCK ANVI+
Sbjct: 1060 TRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIE 1119
Query: 284 RV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
R + GPYCR+C S+D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1120 RTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1171
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 328 bits (842), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 206/414 (49%), Positives = 241/414 (58%), Gaps = 115/414 (27%)
Query: 1 MNQASLECGVFRSE---SYKAEVDNKDIQVKSRPSDDMLNFGKIQSK------------- 44
MN+ASLE G+FRSE SYKAEVD KD + K + D+++ FGK SK
Sbjct: 736 MNKASLERGMFRSEQIRSYKAEVDTKDSE-KRKKMDELVQFGKTYSKIGKVDSLEDDGFP 794
Query: 45 -------SGDIVIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNM 97
+GDIVIG+ E GADHSIKLKHTERG+V KV+LSSND+GKNFA VS+RQ
Sbjct: 795 FIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQ---- 850
Query: 98 VHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAA 131
V S CLGDKFSSMHGQKGVLG+LE QTP QLLEAA
Sbjct: 851 VRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 910
Query: 132 LGKG-ACD------------GLMSYATPFATSTGGVITEQ-HQSFVSQLLN--CIGARNS 175
L KG AC L +ATPF+T ITEQ H++ S+ N R+
Sbjct: 911 LSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSG 970
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
++RSLIF TFYQ+ +HMSE+KVKFRNTG P
Sbjct: 971 E-------------------------MMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHP 1005
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +PVADRKRFGGI FGEM+ DCLIAHGAS NLHERL KCK ANVI
Sbjct: 1006 LTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVI 1065
Query: 283 QRV------VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQL 330
+R + GPYCR+C S+D +++ VPYGAKLL QEL FSMGITL FDT+L
Sbjct: 1066 ERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQEL-FSMGITLNFDTKL 1118
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 184/412 (44%), Gaps = 104/412 (25%)
Query: 1 MNQASLECGVFRSESYKAEVD------NKDIQVKSRPS----------------DDMLNF 38
MNQ+S++ G+FRS ++ +D K ++ +PS DD L
Sbjct: 850 MNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 909
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
I+ DI+IGK I D S L+ TE G+V +VLL++N DG
Sbjct: 910 PGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 969
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
F V +R + +GDKF+S HGQKG +G F Q
Sbjct: 970 AKFVKVRMRTT----KVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHA 1025
Query: 123 -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T A L+E L K + GL A+PF T VS+LL G ++ G
Sbjct: 1026 IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEA--------VSKLLREHGYQSRG 1077
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1078 FEVMYHGHTGKKLM--------------AQVFFGPTYYQRLRHMVDDKIHARARGPVQVL 1123
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+G L ERL + A +VI
Sbjct: 1124 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIAN 1183
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSGVSM 335
+ + CR C + +I + ++PY AKLL QEL +M I+ + T+ SGVS+
Sbjct: 1184 LKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEL-MAMNISPRLYTERSGVSV 1234
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 173/406 (42%), Gaps = 107/406 (26%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 804 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAP 863
Query: 39 GKIQSKSGDIVIGKYAEIGAD-------------HSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I D HSI L+H+E G+V +VLL++N DG
Sbjct: 864 PGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 923
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 924 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIP 979
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 980 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1031
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1032 RMYNGHTGRPL--------------TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1077
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANVIQ 283
+P R R GG+ FGEM+ DC+IAHGA+ L ERL ++ +AN+ +
Sbjct: 1078 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKK 1137
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + DI++ +PY KLL QEL SM I + T+
Sbjct: 1138 NSFE---CRGCKNKTDIVQVYIPYACKLLFQEL-MSMAIAPRMLTK 1179
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 173/405 (42%), Gaps = 105/405 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDIQVKS---RPS----------------DDMLNF 38
MNQ+S++ G FRS SY+ E VK RP DD L
Sbjct: 803 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAP 862
Query: 39 GKIQSKSGDIVIGKYAEIG-------------ADHSIKLKHTERGLVLKVLLSSNDDGKN 85
+ D++IGK I DHS L+H+E G+V +VLL++N DG
Sbjct: 863 PGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLR 922
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
F V +R V +GDKFSS HGQKG +G E P
Sbjct: 923 FVKVRVRS----VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 978
Query: 125 -----AQLLEAALGKGACD-GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGIT 178
QL+E +GK A G ATPF T I S+ L+ G + G
Sbjct: 979 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI--------SKALHKCGYQMRGFE 1030
Query: 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTG 238
++ + L ++IF T+YQ+ HM +DK+ R G Q LT
Sbjct: 1031 TMYNGHTGRRL--------------SAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1076
Query: 239 RPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRV 285
+P R R GG+ FGEM+ DC+IAHGA+ L ERL +C +A I +
Sbjct: 1077 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA--IANL 1134
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + DI++ ++PY KLL QEL +M I + T+
Sbjct: 1135 KKNSFECRGCKNKTDIVQVHIPYACKLLFQEL-MAMAIAPRMLTK 1178
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 177/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P +D L
Sbjct: 840 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIA 899
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 900 PGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDG 959
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 960 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 1015
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1016 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1067
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1068 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1113
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A +VI +
Sbjct: 1114 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAK 1173
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1174 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTDRS 1220
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 176/408 (43%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQ+S++ G+FRS +++ +D + + +P DD L
Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 900
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK I D S L+ TE G+V +VL+++N DG
Sbjct: 901 PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG 960
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 961 LKFVKVRVRTT----KIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 1016
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T +S+LL G ++ G
Sbjct: 1017 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDIT--------VEGISKLLREHGYQSRG 1068
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1069 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1114
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A VI +
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAK 1174
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + C+ C++ DI + ++PY AKLL QEL +M IT + T S
Sbjct: 1175 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMNITPRLYTDRS 1221
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 174/408 (42%), Gaps = 104/408 (25%)
Query: 1 MNQASLECGVFRS------------------ESYKAEVDNKDIQVK----SRPSDDMLNF 38
MNQ+S++ G+FRS ES++ +++K + DD L
Sbjct: 839 MNQSSIDSGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIA 898
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK I D S L+ TE G+V +VL+++N +G
Sbjct: 899 PGVRVSGDDIIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEG 958
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 959 LKFVKVRVRTT----KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHA 1014
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G A+PF T I S+LL G ++ G
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGI--------SKLLREHGYQSRG 1066
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1067 FEVMYNGHTGKKLM--------------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1112
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA------------NVIQR 284
T +PV R R GG+ FGEM+ DC+IAHGA+ L ERL + A V+ +
Sbjct: 1113 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAK 1172
Query: 285 VVGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331
+ + CR C + DI + ++PY AKLL QEL +M I + T S
Sbjct: 1173 LKHNQFECRGCKNKIDIYQVHIPYAAKLLFQEL-MAMNIAPRLYTDRS 1219
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 168/405 (41%), Gaps = 103/405 (25%)
Query: 1 MNQASLECGVFRSESYKAEVDNKD------IQVKSRP----------------SDDMLNF 38
MNQAS++ G+FRS Y+ D + ++ RP DD L
Sbjct: 830 MNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIA 889
Query: 39 GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
+ DI+IGK A I DH S L+ TE G+V +V++++N +G
Sbjct: 890 PGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEG 949
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKF+S HGQKG +G E P
Sbjct: 950 LKFVKVRMRST----RIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHA 1005
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
A L+E L K A G ATPF T VS+LL G ++ G
Sbjct: 1006 IPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEA--------VSKLLRSHGFQSRG 1057
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + L + +F T+YQ+ H+ +DK+ R G Q L
Sbjct: 1058 FEVMYHGHTGRKLV--------------AQVFLGPTYYQRLKHLVDDKIHARARGPVQIL 1103
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-KCKNVANVIQRVVGGPY----- 290
T +PV R R GG+ FGEM+ DC I+HG S L ERL C + VI + G
Sbjct: 1104 TRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASY 1163
Query: 291 ------CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
CR C + + +PY AKLL QEL SM I + T+
Sbjct: 1164 KKDSYECRSCQNRTRFSQVYLPYAAKLLFQEL-MSMNIAPRLFTK 1207
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 168/393 (42%), Gaps = 105/393 (26%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDNKDIQVKSRPSD------DMLNF 38
+N+ASLE G+ RS SY+A E+ K ++ SD D +
Sbjct: 224 LNKASLERGLARSSFFRSYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIIN 283
Query: 39 GKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + SGD++IGK AE + S+ ++H E+G+V VLL+ +G
Sbjct: 284 PEAEVSSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEKGIVDAVLLTETVEG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
A + +R+ LGDKF+S HGQKGV+G + E P
Sbjct: 344 SRLAKIRVREQ----RQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHA 399
Query: 125 -------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
Q+LE GK AC +G TPF T + + + + L G +G
Sbjct: 400 IPSRMSVGQVLEMLAGKAACMEGRRVDGTPF--------TGEDEDDIKEALRANGFETAG 451
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
+ ++ + I + + IF + +YQ+ HM+ DKV R+ G Q L
Sbjct: 452 VESLY-------------NGITG-ERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVL 497
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
T +P R R GG+ FGEM+ DCLIAHGA+ L ERL C +A V
Sbjct: 498 TRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCADCGMIA-VYD 556
Query: 284 RVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
++ YC IC ++ V Y KLL EL
Sbjct: 557 KIRDKKYCPICEDSES-FPVEVSYAFKLLLDEL 588
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 175/408 (42%), Gaps = 109/408 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQ------VKSRPS----------------DDMLNF 38
+NQ++++ G+FRS Y+A D + Q V +P DD L
Sbjct: 792 LNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVA 851
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ DI+IGK + D S L+ +E G+V +V+L+++ +G
Sbjct: 852 PGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGEG 911
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F V +R + +GDKFSS HGQKG G E P
Sbjct: 912 FKFCKVRVRS----MRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHA 967
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
QL+E LGK A G ATPF T I SQ L+ IG + +G
Sbjct: 968 IPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAI--------SQALHKIGYQMTG 1019
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + MD + IF T+YQ+ HM +DK+ R+ G Q L
Sbjct: 1020 HEVMYNGHT-----GRRMD---------AQIFIGPTYYQRLKHMVDDKIHSRSRGPVQIL 1065
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKN---------------VANV 281
T +PV R R GG+ FGEM+ DC+I+HGA+ L ERL ++ +AN+
Sbjct: 1066 TRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIANL 1125
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
+ CR C + I + +PY AKLL QEL SM I + TQ
Sbjct: 1126 KKNSFE---CRRCKNKTQISQIRMPYAAKLLFQEL-MSMSIAPRMFTQ 1169
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 170/394 (43%), Gaps = 106/394 (26%)
Query: 1 MNQASLECGVFRS---ESYKA-------------EVDNKDIQ-------VKSRPSDDMLN 37
+N+ASLE G+ RS SY+A E+ K ++ + D ++N
Sbjct: 224 LNKASLERGLARSSFFRSYEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIIN 283
Query: 38 FGKIQSKSGDIVIGK---------------YAEIGADHSIKLKHTERGLVLKVLLSSNDD 82
+ + SGD++IGK AE + S+ ++H E G+V VLL+ +
Sbjct: 284 -PETEVSSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEEGIVDAVLLTETVE 342
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G A + +R+ +GDKF+S HGQKGV+G + E P
Sbjct: 343 GSRLAKIRVREQR---QPEFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPH 399
Query: 125 --------AQLLEAALGKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
Q+LE GK AC +G TPF T + + + + L G ++
Sbjct: 400 AIPSRMSVGQVLEMLAGKAACMEGRRVDGTPF--------TGEEEKDLKEALKANGFESA 451
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G+ ++ + I + + IF + +YQ+ HM+ D++ R+ G Q
Sbjct: 452 GVETLY-------------NGITG-ERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQV 497
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVI 282
LT +P R R GG+ FGEM+ DCLIAHGA+ L ERL +C +A +
Sbjct: 498 LTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCAECGMIA-IY 556
Query: 283 QRVVGGPYCRICNSADDIIKANVPYGAKLLSQEL 316
++ YC IC ++ + Y KLL EL
Sbjct: 557 DKIRDKKYCPICEDSES-FPVEISYAFKLLLDEL 589
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 169/402 (42%), Gaps = 113/402 (28%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDM---------------LNFGKIQSKS 45
MNQ++++ G+FRS Y+ D + + SRP + LN+ K+
Sbjct: 767 MNQSAIDRGLFRSFFYRTYTDQESM---SRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDG 823
Query: 46 ----------GDIVIGKYAEI--------------GADHSIKLKHTERGLVLKVLLSSND 81
D++IGK I D S ++ TE G+V V+++ N
Sbjct: 824 LISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-NK 882
Query: 82 DGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP-------------- 124
DG F+ V +R +GDKF+S H QKG +G E P
Sbjct: 883 DGYKFSKVKVRSG----RIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINP 938
Query: 125 ---------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
L+E LGK A G ATPF+ T I+ + +S+ G +
Sbjct: 939 HAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGVTVDGISSRLKSY--------GFQQ 990
Query: 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ 234
G+ ++ L R+ +F T+YQ+ HM +DK+ R G Q
Sbjct: 991 RGLEVMYNGMTGRKL--------------RAQMFFGPTYYQRLKHMVDDKIHARARGPLQ 1036
Query: 235 PLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVV-------- 286
LT +PV R R GG+ FGEM+ DC+I+HGAS L ERL +V++ V
Sbjct: 1037 ILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL--MDVSDAYSCYVCDFCGLLA 1094
Query: 287 -GGP---YCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
GG C+ CN+ ++ +PY KLL QEL MG+ +
Sbjct: 1095 MGGSKVNECKGCNNTTNVSMVEIPYAFKLLIQEL---MGMNI 1133
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 167/406 (41%), Gaps = 110/406 (27%)
Query: 1 MNQASLECGVFRSESYK------AEVDNKDIQVKSRPS-----------------DDMLN 37
MN ++++ G+FRS Y+ A +DN + ++ +P+ D +++
Sbjct: 802 MNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIIS 861
Query: 38 FGKIQSKSGDIVIGKYAEIG---------------ADHSIKLKHTERGLVLKVLLSSNDD 82
G ++ D++IGK + D S L+ +E G+V +V+LS N D
Sbjct: 862 PG-MRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSD 920
Query: 83 GKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP--------------- 124
G F + +R V +GDKF+S HGQKG +G + E P
Sbjct: 921 GNKFVKIRMRS----VRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPH 976
Query: 125 --------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNS 175
L+E GK A G + ATPF + + +S LL G
Sbjct: 977 AVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV-------NVQKISGLLCEYGYHLR 1029
Query: 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQP 235
G ++ + L + IF T+YQ+ HM +DK+ R G Q
Sbjct: 1030 GNEVMYNGHTGKKL--------------TTQIFFGPTYYQRLKHMVDDKIHSRARGPIQM 1075
Query: 236 LTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKN-----VAN 280
+ +P+ R R GG+ FGEM+ DC I+HGA+ L ERL C N VAN
Sbjct: 1076 MNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVAN 1135
Query: 281 VIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ C+ C + + +PY KLL QEL SM I +
Sbjct: 1136 L---RTNSFECKACRNKTQVSAVRIPYACKLLFQEL-MSMSIAPRL 1177
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 141/349 (40%), Gaps = 84/349 (24%)
Query: 32 SDDMLNFGKIQSKSGDIVIGKYAEIGA-DHSIKLKHT-----------------ERGLVL 73
DD L + + G I + K A D+SI L HT E G +
Sbjct: 839 EDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYID 898
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQ----------- 122
KV+L++ D + V +RQ+ LGDKFSS HGQKGV G + Q
Sbjct: 899 KVMLTTTDSDQTLIKVLMRQT----RRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGI 954
Query: 123 ---------------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
T +++E GK G G + Y T F G + + + V
Sbjct: 955 CPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFG---GTKVEDASRILVEHG 1011
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT + + IF +YQ+ HM DK
Sbjct: 1012 YNYSGKDMLTSGITG---------------------ETLEAYIFMGPIYYQKLKHMVMDK 1050
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQR 284
+ R G LT +P R R GG+ GEM+ DCLIA+GAS L ERL + A +
Sbjct: 1051 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVD- 1109
Query: 285 VVG-------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
V G +C C S +++K +PY AKLL QEL SM I +
Sbjct: 1110 VCGQCGLLGYKGWCNSCQSTREVVKMTIPYAAKLLFQEL-LSMNIVPRL 1157
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats.
Identities = 97/335 (28%), Positives = 155/335 (46%), Gaps = 53/335 (15%)
Query: 17 KAEVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKV 75
+++V+ KD+ V ++ P F + QS G I++ + E S+ ++ +E G+V KV
Sbjct: 802 ESKVNGKDVLVGRTSPP----RFLEEQSGLGGIILQERRET----SLTVRPSETGVVDKV 853
Query: 76 LLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKG 135
+++ DG V+ R + GDKF+S HGQKGV+G + P + +
Sbjct: 854 IITETGDGTKLVKVTTRD----LRIPEFGDKFASRHGQKGVIGLI--VPQEDMPWTESGI 907
Query: 136 ACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFI-------------- 180
D +++ + P + G +I ++ ++ + G R G FI
Sbjct: 908 VPDLIVNPHGIPSRMTVGQLI----EAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEEL 963
Query: 181 -FKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
FKH ++ D I L + +F + +YQ+ HM DK+ R+ G Q LT +
Sbjct: 964 GFKHSGREVMY----DGITGRRL-EADVFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQ 1018
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVI--QRVVG 287
P R R GG+ FGEM+ D LI HGA+ L ERL C+N ++ + G
Sbjct: 1019 PTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRG 1078
Query: 288 GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322
YC +C + I K + Y KLL EL +MGI
Sbjct: 1079 KVYCPVCGEEERISKVEMSYAFKLLLDELK-AMGI 1112
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
Length = 1149
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 64/288 (22%)
Query: 74 KVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------ 124
+V++S +D+ + V +RQ+ LGDKFSS HGQKGV G + E P
Sbjct: 883 QVMMSVSDNDQALIKVLLRQN----RRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 125 -----------------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
+++E GK G +G + Y T F G + + + V Q
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG---GSKLEDMSKILVDQG 995
Query: 167 LNCIGAR--NSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDK 224
N G SGIT EC +++ IF +YQ+ HM DK
Sbjct: 996 FNYSGKDMLYSGITG-----------EC----------LQAYIFFGPIYYQKLKHMVLDK 1034
Query: 225 VKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVA---NV 281
+ R G LT +P R R GG+ GEM+ DC+IA+GAS L ERL + A +V
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDV 1094
Query: 282 IQR--VVG-GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ ++G +C C SA++IIK +PY AKLL QEL SM I +
Sbjct: 1095 CDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQEL-LSMNIAPRL 1141
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 150/342 (43%), Gaps = 70/342 (20%)
Query: 19 EVDNKDIQV-KSRPSDDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHTERGLVLKVLL 77
+V NK I + K P+ +N +Q +S + Y + I K E + +V++
Sbjct: 827 QVQNKQIMINKEMPAVTSMN--PLQGQSAQV---PYTAV----PISYKGPEPSYIERVMV 877
Query: 78 SSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-EQ-------------- 122
S+N + + +RQ+ +GDKFSS HGQKGV G + EQ
Sbjct: 878 SANAEEDFLIKILLRQT----RIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDM 933
Query: 123 -----------TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCI 170
T + LE GK G +G Y T F GG E Q+ + +
Sbjct: 934 IMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GGSKVEDIQAELER----- 984
Query: 171 GARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNT 230
G ++ K +F + P++ + I++ +YQ+ HM +DK+ R
Sbjct: 985 ----HGFNYVGKDFFYSGITGTPLE---------AYIYSGPVYYQKLKHMVQDKMHARAR 1031
Query: 231 GSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCK------NVANVIQR 284
G LT +P R R GG+ GEM+ DCLI++GAS + ERL +V R
Sbjct: 1032 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGR 1091
Query: 285 VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
+ +C C S+ ++ K ++PY KLL QEL+ SM + K
Sbjct: 1092 MAYCSWCHFCQSSANVSKISMPYACKLLFQELT-SMNVVPKM 1132
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 161/382 (42%), Gaps = 74/382 (19%)
Query: 1 MNQASLECGVFRSESYKA----------------EVDNKDI------QVKSRPSDDMLNF 38
MN+ S+E G+ RS Y+ E+ DI + + +D L F
Sbjct: 224 MNKGSVERGLGRSFFYRTYESEEMRYPGGQEDKFEIPGADISGFRGAEAYAHLDEDGLIF 283
Query: 39 GKIQSKSGDIVIGKYA---------EIG------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + D++IG+ + E+G + S+ ++ E+G+V V L ++ G
Sbjct: 284 PETEVGPDDVLIGRTSPPRFLEEPTELGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGG 343
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
A V +R + LGDKF+S HGQKGV+G L P + + D +++
Sbjct: 344 SKLAKVRVRD----LRIPELGDKFASRHGQKGVVGLL--VPEEDMPFTESGIVPDLIINP 397
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-----------IFKHYFLFCLFE 191
+A P + G V+ + ++ + G R G F + K+ F E
Sbjct: 398 HAIPSRMTVGHVL----EMIGGKVGSLEGRRVDGSLFHGESEEDLRATLKKYGFSHTGKE 453
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D I + IF + +YQ+ HM K+ R+ G Q LT +P R R GG+
Sbjct: 454 VMYDGITGRRYLVD-IFVGVIYYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLR 512
Query: 252 FGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYCRICNSAD 298
FGEM+ D LI HGA+ L +RL C +VA R YC IC+
Sbjct: 513 FGEMERDVLIGHGAALLLKDRLLEESDKVEVWVCGNCGHVATYDYR-RNTAYCHICDDES 571
Query: 299 DIIKANVPYGAKLLSQELSFSM 320
+I K + Y KLL EL M
Sbjct: 572 NIHKVEMSYAFKLLLDELKSMM 593
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 162/402 (40%), Gaps = 102/402 (25%)
Query: 1 MNQASLECGVFRS---ESYKAEVDNKDI---QVKSRPS----------------DDMLNF 38
MN+++++ G FRS SYK + K +V +P+ DD L
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIA 855
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
++ D++IGK + D S L+ +E G+V +V+++ N +G
Sbjct: 856 PGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG 915
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP---------------- 124
F + +R V +GDKF+S HGQKG G E P
Sbjct: 916 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHA 971
Query: 125 -------AQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
L+E GK A G + ATPF + + +S LL+ G G
Sbjct: 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAV-------NVQKISNLLSDYGYHLRG 1024
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + S IF T+YQ+ HM +DK+ R G Q L
Sbjct: 1025 NEVLYNGFTGR--------------KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1070
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL------KCKNVANV-----IQRV 285
+P+ R R GG+ FGEM+ DC IAHGA+ L ERL +V N+ I
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1130
Query: 286 VGGPY-CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
Y CR C + I +PY KLL QEL SM I +
Sbjct: 1131 RTHTYECRGCRNKTQISLVRMPYACKLLFQEL-MSMSIAPRM 1171
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 167/401 (41%), Gaps = 95/401 (23%)
Query: 1 MNQASLECGVFRS---ESYKA--------EVDNKDIQVKS----RPSDDMLNFG------ 39
+N+ASLE G+ RS SY++ ++D ++ K R + N G
Sbjct: 225 INKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLID 284
Query: 40 -KIQSKSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDG 83
+ + +SGD+++GK + EI D S+ ++H E G+V V+LS +G
Sbjct: 285 LESEVRSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEG 344
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTPAQLLEAALGKGACDGLMS- 142
V +R + GDKF+S HGQKGV+G + P + L D +++
Sbjct: 345 NRLGKVRVRD----LRVPEFGDKFASRHGQKGVIGLV--VPQEDLPFTEDGVIPDLIINP 398
Query: 143 YATPFATSTGGVITEQHQSFVSQLLNCIGA--------RNSGITF------IFKHYFLFC 188
+A P + G Q+L IG R G F +H
Sbjct: 399 HAIPSRMTIG------------QVLEMIGGKVGSLECRRVDGTIFSGEGEWALRHALENY 446
Query: 189 LFECPMDWIAFICLV-RSL---IFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 244
F + R L IF + +YQ+ H+ K+ R+ G Q LT +P R
Sbjct: 447 GFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGR 506
Query: 245 KRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGGPYC 291
R GG+ FGEM+ D L+AHGA+ L ERL KC +A + G +C
Sbjct: 507 AREGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIA-IFDYKRGMKFC 565
Query: 292 RICNSADD------IIKANVPYGAKLLSQELSFSMGITLKF 326
+C ++D I + Y KLL EL SMGI K
Sbjct: 566 PVCGESEDIQDNRKIPPVKIAYAFKLLLDELK-SMGIDPKL 605
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 158/399 (39%), Gaps = 94/399 (23%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFG------KIQSK---SGDIVIG 51
+N+AS E G YK+E D+ K + DD L FG ++ K G IG
Sbjct: 759 VNKASWERGFAHGSVYKSEF--IDLSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIG 816
Query: 52 KYAEIGADHS------------IKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMV 98
E G + + K E +V + + SND G F V + +V +
Sbjct: 817 AKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCV--TVRVP 874
Query: 99 HSACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAAL 132
+ +GDKF+S HGQKG+L L E P L+E+
Sbjct: 875 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMA 934
Query: 133 GKGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFE 191
GK A GL ATPF S E + ++L G G + Y E
Sbjct: 935 GKSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGME 987
Query: 192 CPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI
Sbjct: 988 LEAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIR 1036
Query: 252 FGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY----------- 290
FGEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1037 FGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKY 1096
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +C +D I +VPY + EL+ +M I +K D
Sbjct: 1097 NCTVCGRSDSIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 161/405 (39%), Gaps = 108/405 (26%)
Query: 1 MNQASLECGVFRSESYKAEVDNKDIQVKSRPS----------------------DDMLNF 38
+N +++E G FRS Y++ D+++ +V + DD +
Sbjct: 798 LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIA 857
Query: 39 GKIQSKSGDIVIGKYAEIGA---------------DHSIKLKHTERGLVLKVLLSSNDDG 83
I+ D+VIGK + D S L+++E G+V +V+L+ N +G
Sbjct: 858 PGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEG 917
Query: 84 KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL----------------------- 120
F + +R V +GDKF+S HGQKG G
Sbjct: 918 YKFCKIRVRS----VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 973
Query: 121 ---EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
T L+E GK G+ G + ATPF + + +S L G G
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAV-------NVQKISTFLQEYGYHLRG 1026
Query: 177 ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
++ + + + +F T+YQ+ HM +DK+ R G Q L
Sbjct: 1027 NEVMYNGHTGRK--------------INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1072
Query: 237 TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK-----NVANV 281
+P+ R R GG+ FGEM+ DC I+HGA+ L ERL C +AN+
Sbjct: 1073 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANL 1132
Query: 282 IQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C+ C + I + +PY AKLL QEL SM I +
Sbjct: 1133 RNNTFE---CKGCKNKTQISQVRLPYAAKLLFQEL-MSMNIAPRL 1173
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 127/292 (43%), Gaps = 59/292 (20%)
Query: 34 DMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKH-TERGLVLKVLLSSNDDGKNFAVVSIR 92
D L F I+ + GD ++ Y E + I+ H TE G V +V L ND G + I
Sbjct: 829 DGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDS-ECQQIH 887
Query: 93 QSVNMVHSACLGDKFSSMHGQKGV---------LGFLEQ-----------------TPAQ 126
+ + S +GDKFSS HGQKG+ + F E T
Sbjct: 888 VKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGM 947
Query: 127 LLEAALGK-GACDGLMSYATPFATSTGGVITEQHQS---FVSQLLNCIGARNSGITFIFK 182
+E+ GK GAC GL +TPF + +EQ + F QL+ G G
Sbjct: 948 FIESLAGKAGACHGLAQDSTPF------IYSEQQTAADYFGEQLVKA-GYNYHG------ 994
Query: 183 HYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVA 242
PM +++ I+ + +YQ+ HM DK + R TG LT +PV
Sbjct: 995 --------NEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVK 1046
Query: 243 DRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRIC 294
RKR GGI FGEM+ D +I HG S + +RL N ++ Q V CR C
Sbjct: 1047 GRKRAGGIRFGEMERDAVIGHGTSFLMQDRL--MNCSDYAQSWV----CRDC 1092
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 140/335 (41%), Gaps = 88/335 (26%)
Query: 44 KSGDIVIGKYA--------EIG-------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAV 88
K GD+++GK + EI D S+ ++H E G + KV+L+ +G
Sbjct: 294 KGGDVIVGKTSPPRFLEEHEITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKEGNRLVK 353
Query: 89 VSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ----------------- 122
V +R + LGDKF+S HGQKGV+G F E
Sbjct: 354 VKVRD----LRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRM 409
Query: 123 TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
T QLLE GK GA +G G + + + + + + L +G F
Sbjct: 410 TVGQLLEMLGGKVGALEG--------RRIDGTIFSGEKEWDLRKALEALG---------F 452
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPV 241
KH+ +++ + I+ I +YQ+ H+ K+ R+ G Q LT +P
Sbjct: 453 KHHGKEVMYDGKTGKKFEVE-----IYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPT 507
Query: 242 ADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVVGG 288
R R GG+ FGEM+ D LI HGA+ L ERL KC + A ++ G
Sbjct: 508 EGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFA-ILDYKRGL 566
Query: 289 PYCRICNSADDIIKA------NVPYGAKLLSQELS 317
YC IC +++ + +PY KLL EL
Sbjct: 567 KYCPICGEIENLYSSKKIPFVRIPYAFKLLLDELK 601
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG A VS+R LGDKF+S HGQKGV+G L
Sbjct: 325 SVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDE----RIPELGDKFASRHGQKGVVGHL 380
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P +LE GK G+ DG TPF
Sbjct: 381 APQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGRSVDGTPF------ 434
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
T + + + L G ++SG ++ + + IF F
Sbjct: 435 --TGEGEDEIRGTLEDRGFKSSGKEVMYSG--------------VSGEKIEAEIFVGTIF 478
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
Y + HM +K+ R+ G Q LT +P R R GG+ GEM+ D +I HGA+ L ERL
Sbjct: 479 YHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLKERL 538
Query: 274 ----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
C N V N QR V YC C D+ + Y KLL E+
Sbjct: 539 LDSSDREEIHVCGNCGMTAVENYEQRRV---YCPNCEEETDVHSIEMSYAFKLLLDEMK- 594
Query: 319 SMGITLKFDTQ 329
++GI + + +
Sbjct: 595 ALGIAPRLELE 605
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 61 SIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL 120
S+ ++ E G+V V L +DG A VS+R LGDKF+S HGQKGV+G L
Sbjct: 325 SVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDE----RIPELGDKFASRHGQKGVVGHL 380
Query: 121 ---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATSTGG 153
E P +LE GK G+ DG TPF
Sbjct: 381 APQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGRSVDGTPF------ 434
Query: 154 VITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITF 213
T + + + L G ++SG ++ + + IF F
Sbjct: 435 --TGEGEDEIRGTLEDRGFKSSGKEVMYSG--------------VSGEKIEAEIFVGTIF 478
Query: 214 YQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
Y + HM +K+ R+ G Q LT +P R R GG+ GEM+ D +I HGA+ L ERL
Sbjct: 479 YHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLKERL 538
Query: 274 ----------KCKN-----VANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
C N V N QR V YC C D+ + Y KLL E+
Sbjct: 539 LDSSDREEIHVCGNCGMTAVENYEQRRV---YCPNCEEETDVHSIEMSYAFKLLLDEMK- 594
Query: 319 SMGITLKFDTQ 329
++GI + + +
Sbjct: 595 ALGIAPRLELE 605
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
PE=2 SV=2
Length = 1135
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 154/397 (38%), Gaps = 90/397 (22%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E V D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKY-AEIGADHSIKLKHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVHS 100
+ GD G + K E +V + + SND G F + I +V + +
Sbjct: 819 LEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICI--TVRIPRN 876
Query: 101 ACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGK 134
+GDKF+S HGQKG+L L E P L+E+ GK
Sbjct: 877 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
Query: 135 GAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
A GL ATPF S E + ++L G G + Y E
Sbjct: 937 SAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGMELE 989
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI FG
Sbjct: 990 AD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFG 1038
Query: 254 EMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------C 291
EM+ D L+AHG S LH+RL C +++ ++ P C
Sbjct: 1039 EMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNC 1098
Query: 292 RICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
+C +D I +VPY + EL+ +M I +K D
Sbjct: 1099 TVCGRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
PE=1 SV=2
Length = 1135
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 157/398 (39%), Gaps = 92/398 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D +V + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGPY------------ 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYN 1097
Query: 291 CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +C+ +D I +VPY + EL+ +M I +K D
Sbjct: 1098 CTLCSRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1134
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 157/388 (40%), Gaps = 102/388 (26%)
Query: 1 MNQASLECGVFRSESYKAEV--------DNKDIQVKSRPSD-DMLNFGKIQS-------- 43
MN+ASL+ G R K +V D D P+D +G + S
Sbjct: 1237 MNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGE 1296
Query: 44 --KSGDIVIGKYA-----------EIGADHSIK-----LKHTERGLVLKVLLSSNDDGKN 85
+ G I++ KY+ E+ D + K K+ + KVLL+S DD +
Sbjct: 1297 LAQKGQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQ- 1355
Query: 86 FAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL---EQTP------------------ 124
+ I+ + LGDKFSS HGQKGV G + E P
Sbjct: 1356 ---LLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFP 1412
Query: 125 -----AQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF 179
+++E GK G++S F T GG E +S++L + G ++
Sbjct: 1413 SRMTIGKMIELLAGKA---GVLSGKFGFGTCFGGDRVEN----ISKVL-----ISKGFSY 1460
Query: 180 IFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGR 239
K Y + P+ C IF FYQ+ HM DK+ R G LT +
Sbjct: 1461 GGKDYVTSGVTGEPL-----ACF----IFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQ 1511
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCKNVANVIQRVVGGP 289
P R R GG+ GEM+ DCLI +GAS + ERL CKN +G
Sbjct: 1512 PTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISSDRFTVYACKNCG-----FLGYE 1566
Query: 290 -YCRICNSADDIIKANVPYGAKLLSQEL 316
YC+ C S+ DI +PY KLL QEL
Sbjct: 1567 GYCQYCKSSVDISTIQIPYACKLLFQEL 1594
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes octocarinatus
GN=RPA2 PE=3 SV=2
Length = 1166
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 137/320 (42%), Gaps = 65/320 (20%)
Query: 63 KLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL-E 121
K K +E+ + V + NDD KN +SI ++ +GDKFSS HGQKGVL L
Sbjct: 851 KFKDSEKARIETVRVCGNDD-KNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGVLSVLWP 909
Query: 122 QTPAQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITF-- 179
Q E + + +A P + G +I QS ++ + G + TF
Sbjct: 910 QVDMPFTENGITPDLI--INPHAFPSRMTMGMLI----QSMAAKSGSLRGEFKTVETFQR 963
Query: 180 -----IFKHY--------FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVK 226
I H+ F + E I F +++ IF + +YQ+ HM DK +
Sbjct: 964 YDDNDIVGHFGKELLDKGFNYHGNELMYSGI-FGTPLKADIFIGVVYYQRLRHMVSDKSQ 1022
Query: 227 FRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL----------KCK 276
R TG LT +PV RK+ GGI FGEM+ D L+AHGA+ L++RL C+
Sbjct: 1023 ARGTGPIDILTHQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQ 1082
Query: 277 NVANVIQRVVGGP------------------------------YCRICNSADDIIKANVP 306
N +++ V C++C + K +P
Sbjct: 1083 NCGSILSCYVNRAIMKTQTFIPPSLDESNKDTEDKEIHMNEKVICKVCKKNSNCKKVALP 1142
Query: 307 YGAKLLSQELSFSMGITLKF 326
+ + L+ EL+ SMGI LKF
Sbjct: 1143 FVLRFLANELA-SMGIKLKF 1161
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
PE=2 SV=1
Length = 1136
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 157/399 (39%), Gaps = 93/399 (23%)
Query: 1 MNQASLECGVFRSESYKAE------------------VDNKDIQVKSRPSDDMLNFGKIQ 42
+N+AS E G YK+E + D ++ + DD L F +
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGMKPGDPRILQKLDDDGLPFIGAK 818
Query: 43 SKSGDIVIGKYAEIGADHSIKL--KHTERGLVLKVLLSSNDDGK-NFAVVSIRQSVNMVH 99
+ GD Y + S + K E +V + + SND G F V I ++ +
Sbjct: 819 LQYGDPYYS-YLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCI--TMRVPR 875
Query: 100 SACLGDKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALG 133
+ +GDKF+S HGQKG+L L E P L+E+ G
Sbjct: 876 NPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAG 935
Query: 134 KGAC-DGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K A GL ATPF S E + ++L G G + Y E
Sbjct: 936 KSAALHGLCHDATPFIFSEENSALE----YFGEMLKAAGYNFYGTE---RLYSGISGLEL 988
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
D IF + +YQ+ HM DK + R TG+ +T +P+ R GGI F
Sbjct: 989 EAD-----------IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRF 1037
Query: 253 GEMKCDCLIAHGASGN-LHERL----------KCKNVANVIQRVVGGPY----------- 290
GEM+ D L+AHG S LH+RL C +++ ++ P
Sbjct: 1038 GEMERDALLAHGTSFFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKY 1097
Query: 291 -CRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDT 328
C +CN +D I +VPY + EL+ +M I +K D
Sbjct: 1098 NCTLCNRSDTIDTVSVPYVFRYFVAELA-AMNIKVKLDV 1135
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 123/302 (40%), Gaps = 62/302 (20%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I K + KV++SSN + + +RQ+ +GDKFSS HGQKGV G
Sbjct: 853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDKFSSRHGQKGVCG 908
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
+ E P +L+E GK G DG Y T F
Sbjct: 909 LIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG--- 965
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
G + + + V G ++ K Y + P++ + I+
Sbjct: 966 GSKVKDVCEDLVRH----------GYNYLGKDYVTSGITGEPLE---------AYIYFGP 1006
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI +GAS L E
Sbjct: 1007 VYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLE 1066
Query: 272 RLKCKNVANVIQRVVG-------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
RL + A + V G +C C S+ + +PY KLL QEL SM I
Sbjct: 1067 RLMISSDAFEVD-VCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQ-SMNIIP 1124
Query: 325 KF 326
+
Sbjct: 1125 RL 1126
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 123/302 (40%), Gaps = 62/302 (20%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
D I K + KV++SSN + + +RQ+ +GDKFSS HGQKGV G
Sbjct: 853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQT----RRPEIGDKFSSRHGQKGVCG 908
Query: 119 FL---EQTP-----------------------AQLLEAALGK-GACDGLMSYATPFATST 151
+ E P +L+E GK G DG Y T F
Sbjct: 909 LIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG--- 965
Query: 152 GGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWI 211
G + + + V G ++ K Y + P++ + I+
Sbjct: 966 GSKVKDVCEDLVRH----------GYNYLGKDYVTSGITGEPLE---------AYIYFGP 1006
Query: 212 TFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHE 271
+YQ+ HM DK+ R G LT +P R R GG+ GEM+ DCLI +GAS L E
Sbjct: 1007 VYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLE 1066
Query: 272 RLKCKNVANVIQRVVG-------GPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITL 324
RL + A + V G +C C S+ + +PY KLL QEL SM I
Sbjct: 1067 RLMISSDAFEVD-VCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQ-SMNIIP 1124
Query: 325 KF 326
+
Sbjct: 1125 RL 1126
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 124/292 (42%), Gaps = 34/292 (11%)
Query: 59 DHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG 118
+ S+ ++ E G V V L+ ++ + +R LGDKF+S HGQKGV+G
Sbjct: 908 ESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSE----RIPELGDKFASRHGQKGVVG 963
Query: 119 FLEQTPAQLLEAALGKGACDGLM--SYATPFATSTG-------GVITEQHQSFVSQLLNC 169
+ P + + G L+ ++ P + G G I + F+ +
Sbjct: 964 LV--VPQEDMPFT-EDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFIDGTIFS 1020
Query: 170 IGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRN 229
S + K+ F E D I ++ IF + +YQ+ HM K R+
Sbjct: 1021 GEPEKSLRDALVKYGFRKSSTEVMYDGITGRRF-KADIFVGVIYYQKLHHMVAGKFHARS 1079
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL---------------K 274
G Q LT +P R R GG+ FGEM+ D LIAHGA+ + +RL
Sbjct: 1080 RGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIKDRLLDQSDGTVLYVCGNPS 1139
Query: 275 CKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C ++A + R G C +C + +I Y KL+ EL S+G+ ++
Sbjct: 1140 CGHIA-IYDRRKGTLRCPVCGNTGNIYPIETSYAFKLMRDEL-ISLGVVMRL 1189
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 154/401 (38%), Gaps = 101/401 (25%)
Query: 1 MNQASLECGVFRSESYKA--------------EVDNKDIQVKSRPSDDMLNF-------- 38
MN++S+E G++RS ++ ++ + VK D
Sbjct: 738 MNKSSIERGMYRSTFFRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVS 797
Query: 39 GKIQSKSGDIVIGK---------YAEIGA-----DHSIKLKHTERGLVLKVLLSSNDDGK 84
+++ K GD++IGK + E+ D SI +H E G+V VL++ +G
Sbjct: 798 PEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGN 857
Query: 85 NFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFL------------------------ 120
V +R + +GDKF++ HGQKGV+G L
Sbjct: 858 KLVKVRVRD----LRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHAL 913
Query: 121 --EQTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI 177
T Q++EA GK A G ATPF T + Q ++L +G
Sbjct: 914 PSRMTIGQIMEAIGGKYAALSGKPVDATPFLE------TPKLQEMQKEILK-LGHLPDST 966
Query: 178 TFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLT 237
++ L +S I I +YQ+ HM DK+ R G Q LT
Sbjct: 967 EVVYDGRTGQKL--------------KSRILFGIVYYQKLHHMVADKMHARARGPVQILT 1012
Query: 238 GRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVI------------QRV 285
+P R R GG+ FGEM+ DCLI G + + +RL + V+ R
Sbjct: 1013 RQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRS 1072
Query: 286 VGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKF 326
C + + V Y KLL QEL SM I+ +
Sbjct: 1073 KNRYVCPVHGDKSVLHPVTVSYAFKLLIQEL-MSMVISPRL 1112
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 107/233 (45%), Gaps = 24/233 (10%)
Query: 57 GADHSIKLKHTERGLVLKVLLSSNDDG-KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKG 115
G H + K +E V +V + D+G + VSI+ + + S +GDKFSS HGQKG
Sbjct: 883 GVTHYERYKDSEDAFVEEVRVIGADNGTEPLQTVSIK--LRIPRSPVIGDKFSSRHGQKG 940
Query: 116 VLGFLEQTPAQLLEAALGKGACDGLMS-YATPFATSTGGVITEQHQSFVSQLLNCIGARN 174
VL ++ PA + + D +++ +A P + G + +S + G
Sbjct: 941 VLS--QKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMFV----ESLAGKAGALHGLAQ 994
Query: 175 SGITFIFKH------YFLFCLFECPMDWIAFICLVRSL--------IFTWITFYQQFIHM 220
F F YF L + ++ L + I+ + +YQ+ HM
Sbjct: 995 DSTPFKFDEQNTAGDYFGHQLMKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHM 1054
Query: 221 SEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL 273
DK + R TG P TG+P+ RK+ GGI GEM+ D L+AHG S L +RL
Sbjct: 1055 VNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDALLAHGTSFLLQDRL 1107
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 165/403 (40%), Gaps = 97/403 (24%)
Query: 1 MNQASLECGVFRSESYKAE-VDNKDIQVKSR--------------------PSDDMLNFG 39
+N+AS++ G+F +YK V+ + I V + P
Sbjct: 812 LNKASIDRGMFHVVTYKTIIVEERKIGVNEKICMPVASVRRMNNYSLLEDNPESPYFGVV 871
Query: 40 KIQS--KSGDIVIGKY--------AEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVV 89
K++S K D+++GK DHS + +E G V +++ +S F +V
Sbjct: 872 KVKSFVKRNDVLVGKVITKISKDGTRQETDHSTIVSISEEGKVDRIIRTSKKGILMFKIV 931
Query: 90 SIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ-----------------T 123
+Q +GDKF S QKG +G F+E T
Sbjct: 932 IAQQK-----RPEIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLPSRMT 986
Query: 124 PAQLLEAALGKGACDGLMSY--ATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIF 181
Q++ + +GK C ++ A+PF S+ ++ + +L C N T
Sbjct: 987 INQIMASIMGKTCCAKNETFGDASPFQESSLEKPQDKIHALCKELEECGYNYNGTET--- 1043
Query: 182 KHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQ--PLTGR 239
+ C W +R+ IF +Y + HM DK+ R + + + +T +
Sbjct: 1044 ----MMC------GWNG--KKLRAEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQ 1091
Query: 240 PVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQRVV 286
P+ R GG+ GEM+ DC++ HG S LHE++ CK+ V+ +
Sbjct: 1092 PLNGRANEGGLRIGEMEKDCMLVHGISKFLHEKMFDQSDKFIINLCVPCKSYFKVV-KTQ 1150
Query: 287 GGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
G +C CN DI+K N P+ AKL QEL+ +MG L+F +
Sbjct: 1151 NGFFCSGCNGI-DIVKFNCPFAAKLFFQELT-AMGQKLEFKVK 1191
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
GN=RpI135 PE=2 SV=2
Length = 1129
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 136/324 (41%), Gaps = 75/324 (23%)
Query: 55 EIGADHSIKLKHTERGLV--LKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHG 112
E+ +K+ E +V ++ L S + K +++R + A +GDKF+S G
Sbjct: 824 EVATYKVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLR----VPRPATIGDKFASRAG 879
Query: 113 QKGV---------LGFLEQ-----------------TPAQLLEAALGKGAC-DGLMSYAT 145
QKG+ L F E T A ++E GKGA G + AT
Sbjct: 880 QKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDAT 939
Query: 146 PFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLVRS 205
PF S + + ++L G G ++ +D +
Sbjct: 940 PFRFSEENTAID----YFGKMLEAGGYNYYGTERLYSG----------VDGREMT----A 981
Query: 206 LIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGA 265
IF + YQ+ HM DK + R+TG+ + T +P+ RKR GG+ FGEM+ D LI+HGA
Sbjct: 982 DIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGA 1041
Query: 266 SGNLHERL-------------KCKNVANVIQRVV-----GG-----PYCRICNSADDIIK 302
+ L +RL KC ++ +QR+V GG CR+C +
Sbjct: 1042 AFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSM 1101
Query: 303 ANVPYGAKLLSQELSFSMGITLKF 326
+P+ K L ELS S+ I +F
Sbjct: 1102 IEIPFSFKYLVTELS-SVNINARF 1124
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPA2 PE=3 SV=2
Length = 1196
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 118/283 (41%), Gaps = 56/283 (19%)
Query: 44 KSGDIVIGKYAEIGADHSIKLKHT-ERGLVLKVLLSSNDDGK--NFAVVSIRQSVNMVHS 100
+ GD + + + IK H+ E + +V L ++ K ++I+ + V
Sbjct: 846 EEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQ 905
Query: 101 ACLGDKFSSMHGQKGV---------LGFLE-----------------QTPAQLLEAALGK 134
+GDKFSS HGQKGV + F E T +E+ GK
Sbjct: 906 --IGDKFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGK 963
Query: 135 -GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECP 193
GA G+ ATP+ S + F QLL G G P
Sbjct: 964 AGALHGIAQDATPWTFSEEDTPADY---FGDQLLKA-GYNYHG--------------NEP 1005
Query: 194 MDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG 253
M A +R+ I+ + +YQ+ HM DK + R+TG LT +PV RKR GGI G
Sbjct: 1006 MYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVG 1065
Query: 254 EMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNS 296
EM+ D LI HG S L +RL N ++ Q V CR C S
Sbjct: 1066 EMERDALIGHGTSFLLQDRL--LNSSDYTQSAV----CRECGS 1102
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 135/328 (41%), Gaps = 78/328 (23%)
Query: 45 SGDIVIGKYAE--------IGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 96
+G +++GK + + D S+ +K +E G + +V + + DGK V +R
Sbjct: 925 AGTVLVGKVSHSLGPGGNPMRRDVSLTVKQSEEGYLDRVTVDVDSDGKKLVKVRLRTP-- 982
Query: 97 MVHSACLGDKFSSMHGQKGVLGFL---EQTPAQ-----------------------LLEA 130
+GDKF+S QKG G + E P LL+
Sbjct: 983 --RHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKDGVVPDLIINPHAFPSRMTVNYLLQM 1040
Query: 131 ALGKGACDGLMSY-ATPFATSTGGVITEQHQSFVSQLLNCIGA-RNSGITFIFKHYFLFC 188
G AC +Y AT F V+ + ++ ++C + +SG T +F
Sbjct: 1041 CFGTAACKLGKTYDATAFERED--VVRDIAEAAKEAGIDCWDSVLHSGSTGRRLPTKIF- 1097
Query: 189 LFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFG 248
+ CP YQ+ HM K+ R G LT +PVA R R G
Sbjct: 1098 MAPCP--------------------YQRLKHMVSGKMHSRTHGPTDALTRQPVAGRSREG 1137
Query: 249 GIEFGEMKCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGPYCRICNSAD 298
GI+ GEM+ C I+HGAS +L E + CK + YCR+C+ A
Sbjct: 1138 GIKIGEMEQWCKISHGASESLKESVYDMSDKYEVPVCKECGRISDHFE---YCRMCD-AT 1193
Query: 299 DIIKANVPYGAKLLSQELSFSMGITLKF 326
D+ +PY K+L QEL S+GI++ F
Sbjct: 1194 DMSLVKLPYTTKILFQELR-SIGISIAF 1220
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 120/292 (41%), Gaps = 52/292 (17%)
Query: 33 DDMLNFGKIQSKSGDIVIGKYAEIGADHSIKLKHT-ERGLVLKVLLSSNDDGKNFAVVSI 91
+D L + + GD + + + IK H+ E + +V L ++ K + ++
Sbjct: 842 EDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTV 901
Query: 92 RQSVNMVHSACLGDKFSSMHGQKGV---------LGFLE-----------------QTPA 125
+ + +GDKFSS HGQKGV + F E T
Sbjct: 902 SIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIG 961
Query: 126 QLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHY 184
+E+ GK GA G+ +TP+ + + + + L G G
Sbjct: 962 MFVESLAGKAGALHGIAQDSTPWIFNEDDTPAD----YFGEQLAKAGYNYHG-------- 1009
Query: 185 FLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADR 244
PM A +R+ I+ + +YQ+ HM DK + R+TG LT +PV R
Sbjct: 1010 ------NEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGR 1063
Query: 245 KRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNS 296
KR GGI GEM+ D LI HG S L +RL N ++ Q V CR C S
Sbjct: 1064 KRHGGIRVGEMERDALIGHGTSFLLQDRL--LNSSDYTQASV----CRECGS 1109
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 108/271 (39%), Gaps = 63/271 (23%)
Query: 100 SACLGDKFSSMHGQKGVLGFL--------------------------EQTPAQLLEAALG 133
+ +GDKFSS HGQKGVL L T L+E G
Sbjct: 876 NPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAG 935
Query: 134 K-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFEC 192
K GA G AT F + F + L G G ++ FEC
Sbjct: 936 KAGAIHGKFQDATAFQFDENNTAID----FFGEQLAKAGFNRFGNEQMYSGT-TGKEFEC 990
Query: 193 PMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEF 252
IF + +YQ+ HM +DK + R G LT +P+ RK GGI F
Sbjct: 991 E-------------IFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRF 1037
Query: 253 GEMKCDCLIAHGASGNLHERLK----------CKNVANVIQRVVGGPY-------CRICN 295
GEM+ D L+AHGAS L++RL CK + + Y C+ C
Sbjct: 1038 GEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCK 1097
Query: 296 SADDIIKANVPYGAKLLSQELSFSMGITLKF 326
S+D I ++PY L EL+ ++ IT+K
Sbjct: 1098 SSDSIATISIPYVFTYLVAELA-AVNITMKL 1127
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
Length = 1140
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 132/313 (42%), Gaps = 41/313 (13%)
Query: 44 KSGDIVIGKYA-------EIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVN 96
K GD++I K E D S+ ++H E G V +++ + D + VV +
Sbjct: 839 KKGDVLICKVTIKNKNQDEKLVDSSVIVQHGEEGYVDRIVDNVIDGCRIVKVV-----IG 893
Query: 97 MVHSACLGDKFSSMHGQKGVLGFL---EQTP----AQLLEAALGKGACDGLMSYATPFAT 149
+ + +GDKF S QKG G + E P + + M+ +T
Sbjct: 894 QMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQIIST 953
Query: 150 STGGVIT-EQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICL----VR 204
G + T + F + N ++ I H+ F+ + + ++
Sbjct: 954 VMGKLYTVNPNPRFRNG--NSFQENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQ 1011
Query: 205 SLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHG 264
S IF T+Y + HM +DK+ R+ G L +P R + GG+ FGEM+ DC++ HG
Sbjct: 1012 STIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHG 1071
Query: 265 ASGNLHERL----------KCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQ 314
A+ L+ER+ CK+ + C C S ++ + N+PY K L Q
Sbjct: 1072 ATQFLNERMFLNSDPFQIDVCKDCGMMSST---SKKCHHCGSI-NVKRCNIPYSCKNLLQ 1127
Query: 315 ELSFSMGITLKFD 327
EL+ MGI K D
Sbjct: 1128 ELN-GMGIKTKID 1139
>sp|Q38UQ2|RPOB_LACSS DNA-directed RNA polymerase subunit beta OS=Lactobacillus sakei
subsp. sakei (strain 23K) GN=rpoB PE=3 SV=1
Length = 1197
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 143/336 (42%), Gaps = 59/336 (17%)
Query: 34 DMLNFGKI----QSKSGDIVIGKYAEIGA----------------------DHSIKLKHT 67
D+ FG + + K GDI++GK G D S+K+ H
Sbjct: 820 DLDEFGIVRVGAEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLKVPHG 879
Query: 68 ERGLVLKVLLSSNDDGKNFAV---VSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLEQTP 124
G++ V + + + G + + +R + +GDK + HG KG + + P
Sbjct: 880 GGGIIQDVKIFTREAGDELSPGVNMMVRVYITQKRKIQVGDKMAGRHGNKGTVSIV--VP 937
Query: 125 AQLLEAALGKGACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGI---TFIF 181
+ + D L+S P GV + + V +L + ARN GI T +F
Sbjct: 938 EEDMPYTPDGTPVDILLS---PM-----GVPSRMNIGQVLELHLGMAARNLGIHVATPVF 989
Query: 182 KHYFLFCLFEC------PMDWIAFICLVRS------LIFTWITFYQQFIHMSEDKVKFRN 229
L++ P D + + R+ + + +Y + HM +DK+ R+
Sbjct: 990 DGAQDKDLWDAVREANMPSDGKSILYDGRTGEPFDTRVSVGVMYYMKLAHMVDDKLHARS 1049
Query: 230 TGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGP 289
G + +T +P+ + +FGG FGEM+ L A+GA+ L E L K+ +V+ RV
Sbjct: 1050 IGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKS-DDVVGRV--KT 1106
Query: 290 YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
Y I + I K VP ++L +EL S+G+ +K
Sbjct: 1107 YEAIV-KGEPIPKPGVPESFRVLVKELQ-SLGLDMK 1140
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 143/367 (38%), Gaps = 80/367 (21%)
Query: 2 NQASLECGVFRSESYKAEVDNKDIQVKSRPSDDMLNFGKIQS--KSGDIVIG-------- 51
N AS + +F + +VDN + S++ + K+++ + GD+VIG
Sbjct: 840 NPASSQTSIFMKPD-RNKVDNLRDANYDKLSEE--GYAKVETVIRDGDVVIGVVNPKPTA 896
Query: 52 -KYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSM 110
+ + D S K G V KV+ N+DG + ++ +R + + +GDKFSS
Sbjct: 897 REDEKQYKDASSIYKSLIPGAVDKVITEVNNDG--YPIIKMRIRSERIPN--VGDKFSSR 952
Query: 111 HGQKGVLGFL--------------------------EQTPAQLLEAALGK-GACDGLMSY 143
GQKG +G+ T QL+E LGK A G+
Sbjct: 953 AGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLLGKLCAVKGVYGD 1012
Query: 144 ATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIAFICLV 203
ATPF + I ++ L G G ++ + P+
Sbjct: 1013 ATPFTSVDLNAINDE--------LVAAGYEEWGNETMYNG---MNGKKLPVK-------- 1053
Query: 204 RSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFG-EMKCDCLIA 262
IF T+YQ+ M DK R G Q LT + R R GG+ G EM+ D L A
Sbjct: 1054 ---IFIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCA 1110
Query: 263 HGASGNLHERL----------KCKNVANVIQRVVGGPY--CRICNSADDIIKANVPYGAK 310
HG + L E+ C + +V Y C C + I K +PY K
Sbjct: 1111 HGVAQFLKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKIVIPYAFK 1170
Query: 311 LLSQELS 317
LL QEL+
Sbjct: 1171 LLLQELA 1177
>sp|B9DKV0|RPOB_STACT DNA-directed RNA polymerase subunit beta OS=Staphylococcus carnosus
(strain TM300) GN=rpoB PE=3 SV=1
Length = 1183
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 133/321 (41%), Gaps = 57/321 (17%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV----HSACLG 104
+ G+ A D S+++ H G+VL V + + +DG + + Q V + +G
Sbjct: 863 IFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREDGDDSLSPGVNQLVRVYIVQKRKIHVG 922
Query: 105 DKFSSMHGQKGVLGFL---EQTP-----------------------AQLLEAALGKGACD 138
DK HG KGV+ + E P Q+LE LG A +
Sbjct: 923 DKMCGRHGNKGVISKIVPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAAKN 982
Query: 139 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 198
+ A+P V + V + G G T ++ P D
Sbjct: 983 LGIHVASP-------VFDGANDDDVWSTIEEAGMARDGKTVLYD-----GRTGEPFD--- 1027
Query: 199 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 258
+ I + + + HM +DK+ R+TG + +T +P+ + +FGG FGEM+
Sbjct: 1028 ------NRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1081
Query: 259 CLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
L A+GA+ L E L K+ + + RV Y I ++I K +VP ++L +EL
Sbjct: 1082 ALEAYGAAYTLQEILTYKS-DDTVGRV--KTYEAIV-KGENISKPSVPESFRVLMKELQ- 1136
Query: 319 SMGITLK-FDTQLSGVSMAAV 338
S+G+ +K D + MA V
Sbjct: 1137 SLGLDVKVMDEDDKEIEMADV 1157
>sp|B9LL91|RPOB_CHLSY DNA-directed RNA polymerase subunit beta OS=Chloroflexus aurantiacus
(strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpoB PE=3
SV=1
Length = 1227
Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 57/307 (18%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV----HSACLG 104
+ G+ A D S+++ + RG V+ V + S +G V + Q+V ++ G
Sbjct: 913 IFGEKAREVKDSSLRVPNGVRGKVIDVKVFSRSEGAELPV-GVNQTVRVLLCQKRKISAG 971
Query: 105 DKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGKGACD 138
DK + HG KGV+ +E P Q+LE LG A
Sbjct: 972 DKMAGRHGNKGVVSRVLPIEDMPFLPDGRPVDIILNPIGVPSRMNIGQILETHLGWAAAR 1031
Query: 139 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 198
ATP V H+ + LL G G ++ F+ P
Sbjct: 1032 LGFRVATP-------VFDGAHEDQIKDLLVQAGLPADGKVTLYDGR-TGERFDNP----- 1078
Query: 199 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 258
+ + + H+ EDK+ R+TG + +T +P+ + +FGG FGEM+
Sbjct: 1079 --------VTVGYAYMLKLAHLVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1130
Query: 259 CLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
L A+GA+ L E L K+ +V+ RV Y I + I +A VP K+L +EL
Sbjct: 1131 ALEAYGAAYTLQEMLTVKS-DDVVGRV--KTYEAIVK-GEPIQEAGVPESFKVLIKELQ- 1185
Query: 319 SMGITLK 325
S+G++++
Sbjct: 1186 SLGLSVE 1192
>sp|A9WH12|RPOB_CHLAA DNA-directed RNA polymerase subunit beta OS=Chloroflexus aurantiacus
(strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpoB PE=3 SV=1
Length = 1227
Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 57/307 (18%)
Query: 49 VIGKYAEIGADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMV----HSACLG 104
+ G+ A D S+++ + RG V+ V + S +G V + Q+V ++ G
Sbjct: 913 IFGEKAREVKDSSLRVPNGVRGKVIDVKVFSRSEGAELPV-GVNQTVRVLLCQKRKISAG 971
Query: 105 DKFSSMHGQKGVLGF---LEQTP-----------------------AQLLEAALGKGACD 138
DK + HG KGV+ +E P Q+LE LG A
Sbjct: 972 DKMAGRHGNKGVVSRVLPIEDMPFLPDGRPVDIILNPIGVPSRMNIGQILETHLGWAAAR 1031
Query: 139 GLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSGITFIFKHYFLFCLFECPMDWIA 198
ATP V H+ + LL G G ++ F+ P
Sbjct: 1032 LGFRVATP-------VFDGAHEDQIKDLLVQAGLPADGKVTLYDGR-TGERFDNP----- 1078
Query: 199 FICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCD 258
+ + + H+ EDK+ R+TG + +T +P+ + +FGG FGEM+
Sbjct: 1079 --------VTVGYAYMLKLAHLVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1130
Query: 259 CLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSF 318
L A+GA+ L E L K+ +V+ RV Y I + I +A VP K+L +EL
Sbjct: 1131 ALEAYGAAYTLQEMLTVKS-DDVVGRV--KTYEAIVK-GEPIQEAGVPESFKVLIKELQ- 1185
Query: 319 SMGITLK 325
S+G++++
Sbjct: 1186 SLGLSVE 1192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,418,319
Number of Sequences: 539616
Number of extensions: 4962936
Number of successful extensions: 11931
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9679
Number of HSP's gapped (non-prelim): 2005
length of query: 338
length of database: 191,569,459
effective HSP length: 118
effective length of query: 220
effective length of database: 127,894,771
effective search space: 28136849620
effective search space used: 28136849620
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)