Query 019610
Match_columns 338
No_of_seqs 162 out of 1362
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:26:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_B DNA-directed RNA polyme 100.0 7.6E-91 2.6E-95 764.3 23.6 301 1-330 841-1220(1224)
2 4ayb_B DNA-directed RNA polyme 100.0 2.6E-89 9E-94 749.8 25.0 306 1-335 743-1126(1131)
3 3h0g_B DNA-directed RNA polyme 100.0 4.5E-87 1.5E-91 730.8 18.3 302 1-331 830-1209(1210)
4 2a6h_C DNA-directed RNA polyme 100.0 1.8E-85 6.1E-90 713.6 21.1 306 1-331 690-1106(1119)
5 3lu0_C DNA-directed RNA polyme 100.0 4.5E-81 1.5E-85 678.6 13.6 294 1-327 818-1340(1342)
6 3qqc_A DNA-directed RNA polyme 98.6 1.3E-08 4.6E-13 102.0 3.9 58 274-332 7-66 (436)
7 3tbi_B DNA-directed RNA polyme 98.5 3.7E-07 1.3E-11 84.2 8.7 52 29-81 35-108 (228)
8 2bay_A PRE-mRNA splicing facto 16.9 32 0.0011 24.4 0.3 44 190-243 4-50 (61)
9 4eag_A EG:132E8.2 protein; AMP 9.8 4.5E+02 0.015 21.9 5.3 29 179-215 37-65 (130)
10 2p5z_X Type VI secretion syste 9.8 7.3E+02 0.025 23.9 7.8 84 68-165 87-186 (491)
No 1
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=7.6e-91 Score=764.34 Aligned_cols=301 Identities=36% Similarity=0.522 Sum_probs=258.5
Q ss_pred CcccccccccceeeeEEEEEeec--------cccccC---------------CCCCCcccccccccCCCCeEEEEeccCC
Q 019610 1 MNQASLECGVFRSESYKAEVDNK--------DIQVKS---------------RPSDDMLNFGKIQSKSGDIVIGKYAEIG 57 (338)
Q Consensus 1 iNKsSidRG~f~s~~Ykte~~~~--------~~~~~~---------------~~~~~~~~~g~~~v~~gDvligk~~~~~ 57 (338)
|||+|||||||||+.|+++..+. +.+++| +|+||++.+|. .|++|||||||++|++
T Consensus 841 in~~sv~rg~~~s~~~~~y~~~~~~~~~~~~e~~~~P~~~~~~~~~~~~~~~LD~dGiv~~G~-~V~~gDilvgK~~p~~ 919 (1224)
T 1twf_B 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGV-RVSGEDVIIGKTTPIS 919 (1224)
T ss_dssp EEHHHHHTTTTCEEEEEEEEECCCCSCTTCCCEESCCCCSSSCBCCSSCGGGCCTTSBCCTTC-EECTTCEEECEECCCC
T ss_pred hhhhHHhcCCeeEEEEEEEEEEeeeCCCCceeEecCCChhhccCccHHHHhhcccCCccCCcc-EecCCCEEEEEecCCC
Confidence 69999999999999998876431 223322 56789999998 8999999999999843
Q ss_pred ---------------ceeEEEecCCCceeEEEEEEEeCCCCCeeEEEEEeeccccccccccccccccccCCcceeeeec-
Q 019610 58 ---------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE- 121 (338)
Q Consensus 58 ---------------~d~s~~~~~~e~g~Vd~V~~~~~~~g~~~v~v~ir~~~~~~R~~~iGDKfssRHGqKGvvs~i~- 121 (338)
+|+|++++++|.|+||+|.++++++|.+.|+|++|+ +|.|++|||||||||||||||+|+
T Consensus 920 ~~~~~~~~~~~~~~~rd~s~~~~~~e~g~Vd~V~~~~~~~g~~~vkV~ir~----~R~p~iGDKfasRHGqKGvis~i~p 995 (1224)
T 1twf_B 920 PDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRT----TKIPQIGDKFASRHGQKGTIGITYR 995 (1224)
T ss_dssp -------------CCBBCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEE----EECCCTTCEEECTTSCEEEEEEEEC
T ss_pred ccccccccccccCccceeEEEeeCCCCeEEEEEEEEecCCCCEEEEEEEEe----cCCCCchhhhhhhccCcceeeeecc
Confidence 689999999999999999999999999999999999 999999999999999999999999
Q ss_pred -------------------------cChhHHHHHHhhhh-hccCCceeecCCCCCCHHHHHHHHHh-hccccCccccCCC
Q 019610 122 -------------------------QTPAQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQS-FVSQLLNCIGARN 174 (338)
Q Consensus 122 -------------------------MtiGql~E~~~gk~-a~~g~~~~~tpF~~~~~~~i~~~l~~-~~~~~g~~~~~~~ 174 (338)
||||||+|+++||+ ++.|...|+|||++.+++++++.|++ ||+++|+
T Consensus 996 ~eDMPf~~dG~~pDiIiNPhg~PSRMtiGqllE~~lgka~~~~G~~~datpF~~~~~~~i~~~L~~~g~~~~G~------ 1069 (1224)
T 1twf_B 996 REDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGF------ 1069 (1224)
T ss_dssp TTTSCEETTSCCCSEEECGGGSTTTTCHHHHHHHHHHHHHHHHCSCEECCSSSSCCHHHHHHHHHTTTSCTTSE------
T ss_pred cccCCcCCCCCCccEEeCCCcCccccccchhHHHHhhHHHHhcCceeecCCCCCccHHHHHHHHHHcCCCCCCC------
Confidence 99999999999999 88999999999999999999999999 9998888
Q ss_pred CCeEEEeeCCcccccccCCCcccccceeeeeeEEEeeeeeeccccccCccceeeeecCCcccccCCccccccCCceeeee
Q 019610 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 254 (338)
Q Consensus 175 ~gke~l~~g~~~~~~~~~p~~~~~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~GR~r~GG~RfGE 254 (338)
|.|||| +||++|+++||+|++|||||+|||+||+||||+|||+.|||||++||+|+|||||||
T Consensus 1070 ---e~ly~G--------------~TG~~~~~~i~vG~~YyqkL~HmV~DKihaRs~GP~~~lT~QP~~Gr~r~GG~RfGE 1132 (1224)
T 1twf_B 1070 ---EVMYNG--------------HTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGE 1132 (1224)
T ss_dssp ---ECEECT--------------TTCCBCSSCEEEEEEEEEEBSSCGGGTCEEECCCC----------------CCCCCH
T ss_pred ---EEeecC--------------CCCCCccceEEEehhHhhcchhhcccCceEEeeCCCcccccCCCcccccCCceecch
Confidence 999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhchHHhhhhhh----------cccccccccc---cccCCeeecccCCCCccccccChHhHHHHHHHHhhhcC
Q 019610 255 MKCDCLIAHGASGNLHERL----------KCKNVANVIQ---RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMG 321 (338)
Q Consensus 255 ME~daLiahGAs~~L~ErL----------~c~~~~~~~~---~~~~~~~c~~c~~~~~i~~~~ipy~~k~L~~EL~~sm~ 321 (338)
||||||+|||||++|+||| .|..||.+.+ .....++|+.|.++.++.++.+|||||||+||| +|||
T Consensus 1133 MErd~L~a~Gaa~~L~ErL~~~SD~~~~~vC~~cG~~~~~~~~~~~~~~c~~c~~~~~i~~~~iPysfklL~~EL-~sm~ 1211 (1224)
T 1twf_B 1133 MERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL-MAMN 1211 (1224)
T ss_dssp HHHHHHHHHTCHHHHHHHHCCSSCCCEEEEESSSCSSCCEEETTTTEEEBTTTTBSSSEEEEECCHHHHHHHHHH-HHTT
T ss_pred hhhhhHHhccHHHHHHHHHhcCCccceeEeeccCCCeeeecccccCceECCcCCCCCccccccCCHhHHHHHHHH-HHCC
Confidence 9999999999999999999 3444454421 122346799998888999999999999999999 9999
Q ss_pred CeEEEEeee
Q 019610 322 ITLKFDTQL 330 (338)
Q Consensus 322 i~~~~~~~~ 330 (338)
|++++.++.
T Consensus 1212 i~~~l~~~~ 1220 (1224)
T 1twf_B 1212 ITPRLYTDR 1220 (1224)
T ss_dssp BCCEEESCS
T ss_pred CeeEEEecc
Confidence 999999874
No 2
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=2.6e-89 Score=749.81 Aligned_cols=306 Identities=31% Similarity=0.445 Sum_probs=275.0
Q ss_pred CcccccccccceeeeEEEEEee---c-----cccc---------------cCCCCCCcccccccccCCCCeEEEEeccCC
Q 019610 1 MNQASLECGVFRSESYKAEVDN---K-----DIQV---------------KSRPSDDMLNFGKIQSKSGDIVIGKYAEIG 57 (338)
Q Consensus 1 iNKsSidRG~f~s~~Ykte~~~---~-----~~~~---------------~~~~~~~~~~~g~~~v~~gDvligk~~~~~ 57 (338)
|||+|++||+|+|+.|++...+ . +.+. +.+|++|++.+|+ +|++|||||||++|+.
T Consensus 743 ine~~v~rg~ftSihi~~y~~e~r~~~~g~~e~it~~~p~v~~~~~~~~~~~LDe~Gii~iGa-~V~~gDilvGKvtP~~ 821 (1131)
T 4ayb_B 743 MNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEV-EVKGGDVLIGKVSPPR 821 (1131)
T ss_dssp EEHHHHTTTTTCEEEEEEEEEECCCCTTSCCCCCCCCCSSCSSCCCGGGGTTCCTTSBCCTTC-EECTTCEEECCCCCCC
T ss_pred hhcchhhcccceeeEEEEEEEEEEecCCCCceEEecCCccccccchHHHhhcCCccccccCCc-EecCCCEEEEEecCCc
Confidence 6999999999999977664421 1 1111 2367889999998 8999999999999842
Q ss_pred --------------ceeEEEecCCCceeEEEEEEEeCCCCCeeEEEEEeeccccccccccccccccccCCcceeeeec--
Q 019610 58 --------------ADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE-- 121 (338)
Q Consensus 58 --------------~d~s~~~~~~e~g~Vd~V~~~~~~~g~~~v~v~ir~~~~~~R~~~iGDKfssRHGqKGvvs~i~-- 121 (338)
+|+|+++++++.|+||.|.++.+++|.+.|+|++|+ .|.|++|||||||||||||||+||
T Consensus 822 ~~~~~~~~~~~~~~~d~sl~~~~g~~g~Vd~v~~~~~~~~~~~vkV~i~~----~R~~~vGDK~agRHGnKGvvs~i~p~ 897 (1131)
T 4ayb_B 822 FLQEFKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRD----LRIPSIGDKFASRHGQKGVIGMLIPQ 897 (1131)
T ss_dssp -----------CCCCCCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEE----EECCCTTCEEEETTSCEEEEEEEECT
T ss_pred chhhhhhcCcceeeeeeeEEccCCCceEEEEEEEeeccCCceEEEEEEec----cccCcccccccccccccceeeeeccc
Confidence 699999999999999999999999999999999999 999999999999999999999999
Q ss_pred ------------------------cChhHHHHHHhhhh-hccCCceeecCCCCCCHHHHHHHHHh-hccccCccccCCCC
Q 019610 122 ------------------------QTPAQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQS-FVSQLLNCIGARNS 175 (338)
Q Consensus 122 ------------------------MtiGql~E~~~gk~-a~~g~~~~~tpF~~~~~~~i~~~l~~-~~~~~g~~~~~~~~ 175 (338)
||||||+|+++||+ ++.|.+.|+|||.....+++.+.|.+ ||+++|+
T Consensus 898 eDMPf~~dG~~~DiilNP~gvPSRMniGqilE~~~gk~~~~~g~~~~atpf~~~~~e~~~~~l~~~g~~~~g~------- 970 (1131)
T 4ayb_B 898 VDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILKYGYLPDAT------- 970 (1131)
T ss_dssp TTSEEETTSCCCSEECCTTSSTTTTCHHHHHHHHHHHHHHHHCCCCBCCTTSSCCTHHHHHHHHHTTSCTTSE-------
T ss_pred ccCCcCCCCCCccEEECCCCCcccCcHHHHHHHHHHHHHHhCCCceecCccCCCcHHHHHHHHHHcCCCCCCC-------
Confidence 99999999999999 88999999999998888999999988 9999888
Q ss_pred CeEEEeeCCcccccccCCCcccccceeeeeeEEEeeeeeeccccccCccceeeeecCCcccccCCccccccCCceeeeec
Q 019610 176 GITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEM 255 (338)
Q Consensus 176 gke~l~~g~~~~~~~~~p~~~~~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~GR~r~GG~RfGEM 255 (338)
+.|||| +|||+|+++||||++|||||+|||+||+||||+|||+++||||++||+++||||||||
T Consensus 971 --~~lydG--------------~TGe~~~~~i~vG~~Yy~kL~HmV~DKihaRs~GP~s~~TqQPl~Gra~~GG~RfGEM 1034 (1131)
T 4ayb_B 971 --EVTYDG--------------RTGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEM 1034 (1131)
T ss_dssp --ECEEET--------------TTCCBCSSCEEEEEEEEEEBSCCHHHHCEEESSCCBCTTTCCBCSSGGGTCCCEECHH
T ss_pred --EEEeCC--------------CCCCEecCcEEEEhhhhhccchhhccCCEeeccCCCCCcccCCCCCcccCCCcceeHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhchHHhhhhhhccccc----------ccccc--cccCCeeecccCCCCccccccChHhHHHHHHHHhhhcCCe
Q 019610 256 KCDCLIAHGASGNLHERLKCKNV----------ANVIQ--RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGIT 323 (338)
Q Consensus 256 E~daLiahGAs~~L~ErL~c~~~----------~~~~~--~~~~~~~c~~c~~~~~i~~~~ipy~~k~L~~EL~~sm~i~ 323 (338)
|||||+|||||++|+|||+-+|| |.+.. ......+|+.|.++.++.++.+|||||||+||| +||||+
T Consensus 1035 E~~aL~a~Gaa~~LqE~L~~~SD~~~~~vc~~cG~~~~~~~~~~~~~c~~~~~~~~i~~~~iP~sfk~L~~EL-~sm~i~ 1113 (1131)
T 4ayb_B 1035 ERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQEL-MSMIIS 1113 (1131)
T ss_dssp HHHHHHHHTCHHHHHHHTTTTTCEEEEEECSSSCCBCEEETTTTEEECSSCSSSSCCEEEEEEHHHHHHHHHH-HTTTCE
T ss_pred HHHHHHHHhHHHHHHHHhhccCCccceeeccCCCceEEEeccCCceeCCccCCCCCccccCCCHHHHHHHHHH-HHCCcc
Confidence 99999999999999999955554 43321 233457899999988999999999999999999 999999
Q ss_pred EEEEeeec-Ccce
Q 019610 324 LKFDTQLS-GVSM 335 (338)
Q Consensus 324 ~~~~~~~~-~~~~ 335 (338)
+++.+++. ++++
T Consensus 1114 ~~l~~~d~~~~~~ 1126 (1131)
T 4ayb_B 1114 PRLILEDRVGLSG 1126 (1131)
T ss_dssp EEEEEEESSCCC-
T ss_pred eEEEecccccccC
Confidence 99998764 5544
No 3
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-87 Score=730.76 Aligned_cols=302 Identities=35% Similarity=0.519 Sum_probs=275.4
Q ss_pred CcccccccccceeeeEEEEEeec--------ccccc---------------CCCCCCcccccccccCCCCeEEEEeccC-
Q 019610 1 MNQASLECGVFRSESYKAEVDNK--------DIQVK---------------SRPSDDMLNFGKIQSKSGDIVIGKYAEI- 56 (338)
Q Consensus 1 iNKsSidRG~f~s~~Ykte~~~~--------~~~~~---------------~~~~~~~~~~g~~~v~~gDvligk~~~~- 56 (338)
|||||+|||||||+.|+++..+. +.++. .+|+||++.+|. .|++|||||||++|+
T Consensus 830 ink~sv~rg~~~s~~~~~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~LD~dGi~~~G~-~v~~gDiligK~~p~~ 908 (1210)
T 3h0g_B 830 MNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGT-RVSGEDIIIGKTAPIP 908 (1210)
T ss_dssp EEHHHHTTTTTCEEEEEEEEECCCCCSSSCCCCCCCCCTTSCCSCCSCCGGGCCTTSSCCTTC-CCCTTCCCCCCCCCC-
T ss_pred eehhheecCceEEEEEEEEEEEeeecCCCceeEEcCCCcchhcccchhhHhhcCCCCCcCCCC-EecCCCEEEEEecCCC
Confidence 69999999999999998876421 22322 256789999888 789999999999874
Q ss_pred --------------CceeEEEecCCCceeEEEEEEEeCCCCCeeEEEEEeeccccccccccccccccccCCcceeeeec-
Q 019610 57 --------------GADHSIKLKHTERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE- 121 (338)
Q Consensus 57 --------------~~d~s~~~~~~e~g~Vd~V~~~~~~~g~~~v~v~ir~~~~~~R~~~iGDKfssRHGqKGvvs~i~- 121 (338)
.+|+|++++++|.|+||+|.++.+++|.+.|+|++|+ .|.|++|||||||||||||||+|+
T Consensus 909 ~~~~~~~~~~~~~~~rd~s~~~~~~e~g~Vd~V~~~~~~~g~~~vkv~~~~----~R~~~~GDK~a~RhGqKGvi~~i~~ 984 (1210)
T 3h0g_B 909 LDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRS----TRIPQIGDKFASRHGQKGTIGMTYR 984 (1210)
T ss_dssp ----------CCCCCCCCCCCCCTTCCCCCCEEEEEECSSSSEEEEEEECC----CBCCCTTCEEECTTCCCEEEEEEEC
T ss_pred CCchhhcccccccccceeeEEecCCCCeEEEEEEEEEecCCCeEEEEEEEE----ecCCCchhhhhcccCCCceeeEEec
Confidence 2789999999999999999999999999999999999 999999999999999999999999
Q ss_pred -------------------------cChhHHHHHHhhhh-hccCCceeecCCCCCCHHHHHHHHHh-hccccCccccCCC
Q 019610 122 -------------------------QTPAQLLEAALGKG-ACDGLMSYATPFATSTGGVITEQHQS-FVSQLLNCIGARN 174 (338)
Q Consensus 122 -------------------------MtiGql~E~~~gk~-a~~g~~~~~tpF~~~~~~~i~~~l~~-~~~~~g~~~~~~~ 174 (338)
||||||+|+++||+ ++.|.+.++|||++.+.++++++|++ ||+++|+
T Consensus 985 ~edmPf~~~G~~pDii~NP~~~PSRMtigq~~E~~~g~~~~~~g~~~~~tpF~~~~~~~~~~~l~~~g~~~~G~------ 1058 (1210)
T 3h0g_B 985 HEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGF------ 1058 (1210)
T ss_dssp TTTSCCBTTTBCCSEECCGGGSTTSCCHHHHHHHHHHHHSSSSCCCCBCCSSCSCCHHHHHHHHHTTTSCTTSC------
T ss_pred cccCCcCCCCCCCeEEECCCcCCCCccchhhhHhHHHHHHHhcCCceeeccCCCCcHHHHHHHHHHcCcCCCCC------
Confidence 99999999999999 78899999999999999999999999 9999888
Q ss_pred CCeEEEeeCCcccccccCCCcccccceeeeeeEEEeeeeeeccccccCccceeeeecCCcccccCCccccccCCceeeee
Q 019610 175 SGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGE 254 (338)
Q Consensus 175 ~gke~l~~g~~~~~~~~~p~~~~~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~GR~r~GG~RfGE 254 (338)
+.|||| +||++|+++||+|++|||||+|||+||+|+|++||++.|||||++||+|+|||||||
T Consensus 1059 ---~~l~~g--------------~tg~~~~~~i~~G~~yy~kL~Hmv~dK~h~r~~gp~~~~t~QP~~gr~~~GG~r~GE 1121 (1210)
T 3h0g_B 1059 ---EVMYHG--------------HTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGE 1121 (1210)
T ss_dssp ---BCCBCS--------------SSCCBCSSCBEECCEECEECSCCSTTTCEECSSCCBCSSSCSBCCSSTTCCCCCCCH
T ss_pred ---EEEEcC--------------CCCCCccccEEEEehHhhcchhhcccCcEEeccCCCchhccCCcccccccCCeeeeh
Confidence 999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhchHHhhhhhh----------cccccccccc--cccCCeeecccCCCCccccccChHhHHHHHHHHhhhcCC
Q 019610 255 MKCDCLIAHGASGNLHERL----------KCKNVANVIQ--RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGI 322 (338)
Q Consensus 255 ME~daLiahGAs~~L~ErL----------~c~~~~~~~~--~~~~~~~c~~c~~~~~i~~~~ipy~~k~L~~EL~~sm~i 322 (338)
||||||+|||||++|+||| .|..||.+.. .....++|+.|.++.++.++.||||||+|+||| +||||
T Consensus 1122 ME~~~l~a~Gaa~~l~e~l~~~SD~~~~~vC~~cg~~~~~~~~~~~~~c~~c~~~~~i~~~~~p~~~k~l~~El-~~~~i 1200 (1210)
T 3h0g_B 1122 MERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQEL-MSMNI 1200 (1210)
T ss_dssp HHHHHHHHHTBHHHHHHHHHTTTTCCEEEEESSSCCBCCCCSSSCCCCCTTTCCSSCEEEEECCHHHHHHHHHH-HTTTC
T ss_pred hhhhhhhhccHHHHHHHHhhcCCCcceeEeecCCCCeeeecccCCceEcCccCCCCccceecCCHHHHHHHHHH-HhCCC
Confidence 9999999999999999999 4455554432 122357899999999999999999999999999 99999
Q ss_pred eEEEEeeec
Q 019610 323 TLKFDTQLS 331 (338)
Q Consensus 323 ~~~~~~~~~ 331 (338)
++++.++++
T Consensus 1201 ~~rl~~~~~ 1209 (1210)
T 3h0g_B 1201 APRLFTKNH 1209 (1210)
T ss_dssp CEECCCSTT
T ss_pred ceEEEecCC
Confidence 999988754
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=1.8e-85 Score=713.57 Aligned_cols=306 Identities=25% Similarity=0.373 Sum_probs=264.7
Q ss_pred CcccccccccceeeeEEEEE---eec----cccc-----------cCCCCCCcccccccccCCCCeEEEEeccCC-----
Q 019610 1 MNQASLECGVFRSESYKAEV---DNK----DIQV-----------KSRPSDDMLNFGKIQSKSGDIVIGKYAEIG----- 57 (338)
Q Consensus 1 iNKsSidRG~f~s~~Ykte~---~~~----~~~~-----------~~~~~~~~~~~g~~~v~~gDvligk~~~~~----- 57 (338)
|||+|+|||+|+|+.++... .+. +.+. +.+|+||++.+|+ +|++|||||||++|++
T Consensus 690 ine~~v~rg~~tSihi~~~e~~~r~~~~g~eeit~~ip~~~~~~~~~LD~dGiv~iG~-~V~~gDiLvgK~tP~~~~~~~ 768 (1119)
T 2a6h_C 690 ISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGA-EVKPGDILVGRTSFKGESEPT 768 (1119)
T ss_dssp EETHHHHTTCSEEEEEEEEEEEEECCTTCCCBCCSCCSSSCSGGGSSCCSSSBCCTTC-BCCTTSEEECCEEESSSSSCC
T ss_pred hhhhHHhcCCceEEEEEEEEeeeeecCCCceeeeccCCCcchhhhhccCCCcccCCCC-EECCCCEEEEEecCCccccCC
Confidence 69999999999999665433 221 1111 2368899999998 8999999999998753
Q ss_pred -----------------ceeEEEecCCCceeEEEEEEEeCCC-CC-------eeEEEEEeeccccccccccccccccccC
Q 019610 58 -----------------ADHSIKLKHTERGLVLKVLLSSNDD-GK-------NFAVVSIRQSVNMVHSACLGDKFSSMHG 112 (338)
Q Consensus 58 -----------------~d~s~~~~~~e~g~Vd~V~~~~~~~-g~-------~~v~v~ir~~~~~~R~~~iGDKfssRHG 112 (338)
+|+|+++++++.|+|++|.++++++ |. +.|+|++|+ .|.|++|||||||||
T Consensus 769 ~ee~ll~aifg~k~~~~rd~Sl~~~~~e~G~V~~V~~~~~~~~g~~l~~~~~~~vkV~i~~----~R~~~vGDKfasRHG 844 (1119)
T 2a6h_C 769 PEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQ----KRKLQVGDKLANRHG 844 (1119)
T ss_dssp HHHHHHHHHHHSCCCCEEECCEECCSSCCCEEEEEEEECSSCSSCCCCTTEEEEEEEEEEE----EEECCTTCEEECTTS
T ss_pred hhhhhhhhhhcccccccceeeEEccCCccEEEEEEEEEccCCCCcccCCCcceEEEEEEcc----cCCcccCchhhhccC
Confidence 5999999999999999999998876 64 689999999 999999999999999
Q ss_pred Ccceeeeec--------------------------cChhHHHHHHhhhh-hccCCceeecC-CCCCCHHHHHHHHHhhcc
Q 019610 113 QKGVLGFLE--------------------------QTPAQLLEAALGKG-ACDGLMSYATP-FATSTGGVITEQHQSFVS 164 (338)
Q Consensus 113 qKGvvs~i~--------------------------MtiGql~E~~~gk~-a~~g~~~~~tp-F~~~~~~~i~~~l~~~~~ 164 (338)
||||||+|+ ||||||+|+++||+ +..|.. .+|| |++.+.+++.+.|++.+.
T Consensus 845 qKGVis~i~p~eDMPf~~dG~~pDiIlNPhgvPSRMtiGqllE~~lG~a~~~~g~~-~atp~F~~~~~~~i~~~L~~~~~ 923 (1119)
T 2a6h_C 845 NKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQR-YISPIFDGAKEPEIKELLAQAFE 923 (1119)
T ss_dssp CEEEEEEEECTTTSCBCSSSCBCSEECCSTTTTTTTBTHHHHHHHHHHHHHHTTEE-EECCTTTSCCHHHHHHHHHHHHH
T ss_pred CCceEEeeeccCCCccccCCCCccEEeCCCcCccccchhhhhHHHhhhHHhhcCCc-eEecccCCCCHHHHHHHHHHhhh
Confidence 999999999 99999999999999 555664 5999 999999999998876311
Q ss_pred c-c----------C----------ccccC--------------CCCCeEEEeeCCcccccccCCCcccccceeeeeeEEE
Q 019610 165 Q-L----------L----------NCIGA--------------RNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFT 209 (338)
Q Consensus 165 ~-~----------g----------~~~~~--------------~~~gke~l~~g~~~~~~~~~p~~~~~tG~~~~~~if~ 209 (338)
. . + +..+. +.+||+.|||| +||++|+++||+
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Gk~~lydG--------------~TGe~~~~~I~v 989 (1119)
T 2a6h_C 924 VYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDG--------------RTGEPIEGPIVV 989 (1119)
T ss_dssp HHHHHHHHHTCCCBHHHHHHHHHHHTTTSSCTTSCHHHHHHHHHHTTEECCBCS--------------SSCCBCSSCEEE
T ss_pred hccccccccccccchhhhhhhhhhhcCCcccccccchhhhcccCCCCceEeecC--------------CCCCCccceEEE
Confidence 0 0 0 00012 44677999999 999999999999
Q ss_pred eeeeeeccccccCccceeeeecCCcccccCCccccccCCceeeeeccchhhhhhchHHhhhhhhcccccccccccccCCe
Q 019610 210 WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGP 289 (338)
Q Consensus 210 G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~GR~r~GG~RfGEME~daLiahGAs~~L~ErL~c~~~~~~~~~~~~~~ 289 (338)
|++|||||+|||+||+||||+|||++|||||++||+|+|||||||||||||+|||||++|+|||+-+|| ++..|.. .
T Consensus 990 G~~Yy~kL~HmVdDKihaRs~GP~s~lTqQP~~Gra~~GGqRfGEME~~aL~a~GAa~~L~E~L~~kSD-~~~gr~~--~ 1066 (1119)
T 2a6h_C 990 GQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSD-DIEGRNA--A 1066 (1119)
T ss_dssp EEEEEEEBCCCTTTSCEEESSCCBCSSSCSBCCCSSSCCCEEECHHHHHHHHHTTCSHHHHHHHTTTTT-CHHHHHH--H
T ss_pred EhHHhhcchhhcccCcEEeeccccceeecCCCcccccCCCeeeehhehhhhhhccHHHHHHHHhccCCc-ccccccc--e
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 5666653 6
Q ss_pred eecccCCCCccccccChHhHHHHHHHHhhhcCCeEEEEeeec
Q 019610 290 YCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLS 331 (338)
Q Consensus 290 ~c~~c~~~~~i~~~~ipy~~k~L~~EL~~sm~i~~~~~~~~~ 331 (338)
||.+|. +.++.++.+|||||+|++|| +||||++++.++..
T Consensus 1067 ~~~~~~-~~~i~~~~iP~sfk~L~~EL-~sl~i~~~l~~~~~ 1106 (1119)
T 2a6h_C 1067 YEAIIK-GEDVPEPSVPESFRVLVKEL-QALALDVQTLDEKD 1106 (1119)
T ss_dssp HHHHHT-TCCCCCCCCCHHHHHHHHHH-HHSSCEECCBCSSS
T ss_pred EEEeec-CCccCccCCCHHHHHHHHHH-HhCCCceEEEecCC
Confidence 898885 56899999999999999999 99999999987643
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=4.5e-81 Score=678.60 Aligned_cols=294 Identities=23% Similarity=0.345 Sum_probs=260.9
Q ss_pred CcccccccccceeeeEEE---EEeec----cccc-----------cCCCCCCcccccccccCCCCeEEEEeccCC-----
Q 019610 1 MNQASLECGVFRSESYKA---EVDNK----DIQV-----------KSRPSDDMLNFGKIQSKSGDIVIGKYAEIG----- 57 (338)
Q Consensus 1 iNKsSidRG~f~s~~Ykt---e~~~~----~~~~-----------~~~~~~~~~~~g~~~v~~gDvligk~~~~~----- 57 (338)
||+++|++++|+|+.... +..+. +.+. +.+|++|++.+|+ +|++|||||||++|++
T Consensus 818 ISErlV~eD~fTSIHIee~e~~aRdtklG~EeiTrdIPnv~e~al~~LDe~GIv~iGa-~V~~GDILVGKvtPkge~~~t 896 (1342)
T 3lu0_C 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA-EVTGGDILVGKVTPKGETQLT 896 (1342)
T ss_dssp ECTHHHHTTTSCEEEEEEEEEECCEETTEECCCCSCCSSCCHHHHHSBCSSSCBCTTC-CCCTTCEEECCCCBCCTTTCC
T ss_pred hhhhhhhcCCceeEEEEEEeeeeeecCCCCceecccCCCCChHHHhcCCCCCCeecCc-EECCCCEEEeccCCCCCCcCC
Confidence 689999999999994444 33221 1121 2478999999998 8999999999999864
Q ss_pred -----------------ceeEEEecCCCceeEEEEEEEeCC---------------------------------------
Q 019610 58 -----------------ADHSIKLKHTERGLVLKVLLSSND--------------------------------------- 81 (338)
Q Consensus 58 -----------------~d~s~~~~~~e~g~Vd~V~~~~~~--------------------------------------- 81 (338)
+|+|+++|+++.|+|+.|++++.+
T Consensus 897 pEekLLraIFGeka~~vkDtSL~vp~g~~G~Vidv~~f~r~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 976 (1342)
T 3lu0_C 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 (1342)
T ss_dssp HHHHHGGGTSCSSSSSBCCCCEECCTTCCCEEEECCCCCCGGGCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCcccccccCcEecCCCCcEEEEEEEEEecccccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 699999999999999999988642
Q ss_pred -------------------------------------------------------------C-------CCeeEEEEEee
Q 019610 82 -------------------------------------------------------------D-------GKNFAVVSIRQ 93 (338)
Q Consensus 82 -------------------------------------------------------------~-------g~~~v~v~ir~ 93 (338)
+ ..+.|+|++|+
T Consensus 977 ~~l~~~g~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~gd~l~~gv~k~VkV~ia~ 1056 (1342)
T 3lu0_C 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 (1342)
T ss_dssp HHHHTTSCCHHHHTTSCGGGTTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSSSCEEEEEEEE
T ss_pred HHHhhcCCCHHHHhhCCHHHhhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCcCCceEEEEEEEE
Confidence 0 23679999999
Q ss_pred ccccccccccccccccccCCcceeeeec--------------------------cChhHHHHHHhhhh-hccCCc-----
Q 019610 94 SVNMVHSACLGDKFSSMHGQKGVLGFLE--------------------------QTPAQLLEAALGKG-ACDGLM----- 141 (338)
Q Consensus 94 ~~~~~R~~~iGDKfssRHGqKGvvs~i~--------------------------MtiGql~E~~~gk~-a~~g~~----- 141 (338)
.|.|++|||||||||||||||+|+ |||||++|+++||+ +..|..
T Consensus 1057 ----kRk~qvGDK~AgRHGnKGVis~I~p~EDMPf~~dG~~pDIIlNP~gvPSRMnIGqilE~~lG~aa~~~G~~i~~~~ 1132 (1342)
T 3lu0_C 1057 ----KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 (1342)
T ss_dssp ----EECCCTTCEEECSSSCCEEECCCCCTTTSCEETTEEECSEECCGGGTTSSCBTHHHHHHHHHHGGGTSSTHHHHTT
T ss_pred ----eccCCCCCCcccccCCCceEEEEecccCCCCCCCCCCCcEEeCCCCCCCccchhhhhHHhhhHHHHhcCchHHHHH
Confidence 999999999999999999999999 99999999999999 444431
Q ss_pred ------------------------------------------------eeecC-CCCCCHHHHHHHHHh-hccccCcccc
Q 019610 142 ------------------------------------------------SYATP-FATSTGGVITEQHQS-FVSQLLNCIG 171 (338)
Q Consensus 142 ------------------------------------------------~~~tp-F~~~~~~~i~~~l~~-~~~~~g~~~~ 171 (338)
..+|| |++.+.++|.++|.+ ||+.+|+
T Consensus 1133 ~~~~~~~~~r~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~aTPvFdga~~~~i~~~L~~aG~~~~Gk--- 1209 (1342)
T 3lu0_C 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ--- 1209 (1342)
T ss_dssp THHHHCTTTHHHHHHHTTTTCCCSSSCCTTTSCHHHHHHTTTTTSSCTTCBCCSSSSCCHHHHHHHTSSSSSCSSSC---
T ss_pred HhhhhhHHHHHHHHHHhhcccccchhhhhcccchHHHHHHhhhhccCCcccCCCCCCCCHHHHHHHHHHcCCCCCCC---
Confidence 23899 999999999999998 9998888
Q ss_pred CCCCCeEEEeeCCcccccccCCCcccccceeeeeeEEEeeeeeeccccccCccceeeeecCCcccccCCccccccCCcee
Q 019610 172 ARNSGITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIE 251 (338)
Q Consensus 172 ~~~~gke~l~~g~~~~~~~~~p~~~~~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~GR~r~GG~R 251 (338)
+.|||| +||++|+++||||++|||||+|||+||+||||+|||+++||||++||+++||||
T Consensus 1210 ------~~LydG--------------rTGe~f~~~V~vG~~YylKL~HmVdDKiHaRs~GPysllTqQPl~Gkaq~GGqR 1269 (1342)
T 3lu0_C 1210 ------IRLYDG--------------RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 (1342)
T ss_dssp ------BCCBCS--------------SSCSBCSSCBCEECCEEEEBCCCGGGSCCCBSSCCBCSSSCCBCCCSSSCCCCC
T ss_pred ------EEEEcC--------------CCCCCcccceeeeehhHhhhhhccccceEEeccCCCcccccCCCCccccCCCee
Confidence 999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccchhhhhhchHHhhhhhhcccccccccccccCCeeecccCCCCccccccChHhHHHHHHHHhhhcCCeEEEE
Q 019610 252 FGEMKCDCLIAHGASGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFD 327 (338)
Q Consensus 252 fGEME~daLiahGAs~~L~ErL~c~~~~~~~~~~~~~~~c~~c~~~~~i~~~~ipy~~k~L~~EL~~sm~i~~~~~ 327 (338)
|||||+|||+|||||++|+|||+.+|| ++..|.. .||.+|.. .++..+.+|||||+|++|| +||||++++.
T Consensus 1270 fGEMEvwaL~a~GAa~~LqE~Lt~kSD-dv~gr~~--~y~~i~~g-~~~~~~~iPesfkvL~~EL-~sl~l~v~l~ 1340 (1342)
T 3lu0_C 1270 FGEMEVWALEAYGAAYTLQEMLTVKSD-DVNGRTK--MYKNIVDG-NHQMEPGMPESFNVLLKEI-RSLGINIELE 1340 (1342)
T ss_dssp CCHHHHHHHHHSSCSHHHHHHTTTSSS-CHHHHHH--HHHHHTTT-SCCCCCCCCHHHHHHHHHH-HTSSCCEECC
T ss_pred eehHHHHHHHhccHHHHHHHHhhcCCC-ccccchh--hhhhhcCC-CCCCcCCCCHHHHHHHHHH-HhCCCCeEec
Confidence 999999999999999999999999999 6777754 68888764 6888999999999999999 9999999874
No 6
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=98.62 E-value=1.3e-08 Score=101.99 Aligned_cols=58 Identities=29% Similarity=0.510 Sum_probs=47.6
Q ss_pred ccccccccccc--ccCCeeecccCCCCccccccChHhHHHHHHHHhhhcCCeEEEEeeecC
Q 019610 274 KCKNVANVIQR--VVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQLSG 332 (338)
Q Consensus 274 ~c~~~~~~~~~--~~~~~~c~~c~~~~~i~~~~ipy~~k~L~~EL~~sm~i~~~~~~~~~~ 332 (338)
+|..|+.+... ....++|+.|.+++.+..+.||||||||+||| +||||.+++.++..-
T Consensus 7 VC~~CG~~~~~~~~~~~~~C~~C~~~~~i~~v~iPYa~KlL~qEL-~smnI~~rl~~~d~~ 66 (436)
T 3qqc_A 7 VCENCGHIALEDKRRRRVYCPVCGEEERISKVEMSYAFKLLLDEL-KAMVIRPKLNLSEGG 66 (436)
T ss_dssp EETTTCCBCEEETTTTEEECTTTCCSSSEEEEEECHHHHHHHHHH-HHTTBCCEEEEEC--
T ss_pred EeCCCCceeeeccccCccCCCCCCCCCeEEEEEcChHHHHHHHHH-HhCCeeceeeccccc
Confidence 67777765431 22358999999999999999999999999999 999999999998643
No 7
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=98.47 E-value=3.7e-07 Score=84.22 Aligned_cols=52 Identities=25% Similarity=0.470 Sum_probs=47.5
Q ss_pred CCCCCCcccccccccCCCCeEEEEeccCC----------------------ceeEEEecCCCceeEEEEEEEeCC
Q 019610 29 SRPSDDMLNFGKIQSKSGDIVIGKYAEIG----------------------ADHSIKLKHTERGLVLKVLLSSND 81 (338)
Q Consensus 29 ~~~~~~~~~~g~~~v~~gDvligk~~~~~----------------------~d~s~~~~~~e~g~Vd~V~~~~~~ 81 (338)
.+|++|++.+|+ +|++|||||||++|++ +|+|+++|+++.|+|+.|++++.+
T Consensus 35 ~LDe~GIV~iGs-~V~~GDILVGKvTPk~~~~~tpEekLL~aIfg~k~~~vkDtSL~vp~G~~G~VidV~if~r~ 108 (228)
T 3tbi_B 35 KLDESGIVYIGA-EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 108 (228)
T ss_dssp TBCTTSBBCTTC-CCBTTCEEECEEEECCGGGCCHHHHHHHHHHCTTSSCEEECCEECCSSCBEEEEEEEEEEBT
T ss_pred cCCCCCCeecCC-EECCCCEEEeccCCCCCCCCChHHHHHHHHhCCccccceeCcEecCCCCcEEEEEEEEEecC
Confidence 478899999998 8999999999999874 799999999999999999999764
No 8
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=16.85 E-value=32 Score=24.44 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=30.4
Q ss_pred ccCCCcccccceeeeeeEEE---eeeeeeccccccCccceeeeecCCcccccCCccc
Q 019610 190 FECPMDWIAFICLVRSLIFT---WITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVAD 243 (338)
Q Consensus 190 ~~~p~~~~~tG~~~~~~if~---G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~G 243 (338)
|-|| .|++.++.++.. |.+|=.+...---++ ...+++|+||+.-
T Consensus 4 ~~Cp----Is~~~m~dPV~~~~sG~~yer~~I~~~l~~------~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCA----ISGKVPRRPVLSPKSRTIFEKSLLEQYVKD------TGNDPITNEPLSI 50 (61)
T ss_dssp CCCT----TTCSCCSSEEEETTTTEEEEHHHHHHHHHH------HSBCTTTCCBCCG
T ss_pred EEec----CCCCCCCCCEEeCCCCcEEcHHHHHHHHHh------CCCCcCCcCCCCh
Confidence 3477 999999999888 888866544322211 2348999999864
No 9
>4eag_A EG:132E8.2 protein; AMPK, transferase; HET: ATP TAM; 2.70A {Drosophila melanogaster}
Probab=9.79 E-value=4.5e+02 Score=21.87 Aligned_cols=29 Identities=14% Similarity=-0.011 Sum_probs=22.5
Q ss_pred EEeeCCcccccccCCCcccccceeeeeeEEEeeeeee
Q 019610 179 FIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQ 215 (338)
Q Consensus 179 ~l~~g~~~~~~~~~p~~~~~tG~~~~~~if~G~~yy~ 215 (338)
..-+.|.++|+|.+| .++. .+.++.+-|+
T Consensus 37 K~~~pY~vkcR~~n~----~~~~----~vKm~LQLYq 65 (130)
T 4eag_A 37 KIINPYHVRVRRQNV----KTGK----FSKMSLQLYQ 65 (130)
T ss_dssp EEEETTEEEEEEECT----TTCC----EEEEEEEEEE
T ss_pred eeCCCEEEEEEecCC----CCCc----eeEEEEEEEE
Confidence 344679999999888 7765 6788888887
No 10
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=9.77 E-value=7.3e+02 Score=23.88 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=52.4
Q ss_pred CceeEEEEEEEeCCCCCeeEEEEEeeccccccccccccccccccCCcceeeeec--cChhHHHHHHhhh-hhccC-Cc--
Q 019610 68 ERGLVLKVLLSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE--QTPAQLLEAALGK-GACDG-LM-- 141 (338)
Q Consensus 68 e~g~Vd~V~~~~~~~g~~~v~v~ir~~~~~~R~~~iGDKfssRHGqKGvvs~i~--MtiGql~E~~~gk-~a~~g-~~-- 141 (338)
-.|+|..+.....+.+.....++++... -... + ..=++|+ ||+.++++.+++. ..+.+ .+
T Consensus 87 ~~GiVt~~~~~~~~~~~~~y~l~l~p~l-----~~L~------~---~~~~Rifq~~tv~dIv~~vl~~~~g~~~~~~~~ 152 (491)
T 2p5z_X 87 LHGVITGFKHLSSSQDEARYEVRLEPRM-----ALLT------R---SRQNAIYQNQTVPQIVEKILRERHQMRGQDFVF 152 (491)
T ss_dssp EEEEEEEEEEEEECSSCEEEEEEEECGG-----GGGG------G---CCCBEEEEEECHHHHHHHHHHTTTCCCSSSEEE
T ss_pred EEEEEEEEEEecCCCCEEEEEEEEcCHH-----HHhh------C---CCCcceecCCCHHHHHHHHHHhhcCCCccceEE
Confidence 3689999998876555556666666611 1111 1 2234666 9999999999998 54332 11
Q ss_pred ---------eeecCCCCCCHHHHHHHHHh-hccc
Q 019610 142 ---------SYATPFATSTGGVITEQHQS-FVSQ 165 (338)
Q Consensus 142 ---------~~~tpF~~~~~~~i~~~l~~-~~~~ 165 (338)
.+..-+..++.+.+.+++.+ |..+
T Consensus 153 ~l~~~~~~r~y~vQy~ESD~~Fl~RLa~eeGi~~ 186 (491)
T 2p5z_X 153 NLKSEYPAREQVMQYGEDDLTFVSRLLSEVGIWF 186 (491)
T ss_dssp ECSSCCCCEEEEEECSCCHHHHHHHHHHHHTCEE
T ss_pred EccCCCCcceeEEEecCchHHHHHHHHHHcCCEE
Confidence 11222566778888888887 6543
Done!