RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 019610
         (338 letters)



>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1207

 Score =  177 bits (450), Expect = 3e-50
 Identities = 115/406 (28%), Positives = 167/406 (41%), Gaps = 104/406 (25%)

Query: 1    MNQASLECGVFRS---ESYKAEVDNKDIQVKSRPS-------------------DDMLNF 38
            MNQ+S++ G+FRS    SY  +     + +                        DD L  
Sbjct: 824  MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 883

Query: 39   GKIQSKSGDIVIGKYAEIGADH---------------SIKLKHTERGLVLKVLLSSNDDG 83
              ++    D++IGK   I  D                S  L+ TE G+V +VL+++N DG
Sbjct: 884  PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG 943

Query: 84   KNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLG---------FLEQ------------ 122
              F  V +R          +GDKF+S HGQKG +G         F  +            
Sbjct: 944  LKFVKVRVRT----TKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHA 999

Query: 123  -----TPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQLLNCIGARNSG 176
                 T A L+E  L K  A  G    A+PF      +  E     +S+LL   G ++ G
Sbjct: 1000 IPSRMTVAHLIECLLSKVAALSGNEGDASPF----TDITVEG----ISKLLREHGYQSRG 1051

Query: 177  ITFIFKHYFLFCLFECPMDWIAFICLVRSLIFTWITFYQQFIHMSEDKVKFRNTGSFQPL 236
               ++                       + IF   T+YQ+  HM +DK+  R  G  Q L
Sbjct: 1052 FEVMY----------NGHTGKKL----MAQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1097

Query: 237  TGRPVADRKRFGGIEFGEMKCDCLIAHGASGNLHERL-------------KCKNVANVIQ 283
            T +PV  R R GG+ FGEM+ DC+IAHGA+  L ERL              C  +  + +
Sbjct: 1098 TRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAK 1157

Query: 284  RVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLKFDTQ 329
                   C+ C++  DI + ++PY AKLL QEL  +M IT +  T 
Sbjct: 1158 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELM-AMNITPRLYTD 1202


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
            [TaxId: 274]}
          Length = 1119

 Score =  143 bits (362), Expect = 2e-38
 Identities = 69/364 (18%), Positives = 126/364 (34%), Gaps = 87/364 (23%)

Query: 44   KSGDIVIGKYAEIGAD----------------------HSIKLKHTERGLVLKVL----- 76
            K GDI++G+ +  G                         S+++   E G+V++ +     
Sbjct: 750  KPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRG 809

Query: 77   ---LSSNDDGKNFAVVSIRQSVNMVHSACLGDKFSSMHGQKGVLGFLE------------ 121
               +      +    V + Q   +     +GDK ++ HG KGV+  +             
Sbjct: 810  DPGVELKPGVREVVRVYVAQKRKL----QVGDKLANRHGNKGVVAKILPVEDMPHLPDGT 865

Query: 122  --------------QTPAQLLEAALGK-GACDGLMSYATPFATSTGGVITEQHQSFVSQL 166
                              Q+LE  LG  G   G    +  F  +    I E         
Sbjct: 866  PVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVY 925

Query: 167  LNCIGARNSGITFIFKHYFLFCL-------FECPMDWIAFICL--------------VRS 205
                     G+                    + P + +  + L              +  
Sbjct: 926  FGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEG 985

Query: 206  LIFTWITFYQQFIHMSEDKVKFRNTGSFQPLTGRPVADRKRFGGIEFGEMKCDCLIAHGA 265
             I     F  +  HM EDK+  R+TG +  +T +P+  + +FGG  FGEM+   L A+GA
Sbjct: 986  PIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGA 1045

Query: 266  SGNLHERLKCKNVANVIQRVVGGPYCRICNSADDIIKANVPYGAKLLSQELSFSMGITLK 325
            +  L E L  K+  ++  R     Y  I    +D+ + +VP   ++L +EL  ++ + ++
Sbjct: 1046 AHTLQEMLTLKS-DDIEGRN--AAYEAIIKG-EDVPEPSVPESFRVLVKEL-QALALDVQ 1100

Query: 326  FDTQ 329
               +
Sbjct: 1101 TLDE 1104


>d1lj5a_ e.1.1.1 (A:) Plasminogen activator inhibitor-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 379

 Score = 26.0 bits (56), Expect = 8.0
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 170 IGARNSGITFIFKHYFLFCLFECPMDWIAFI 200
           + AR +    I    FLF +   P   + F+
Sbjct: 343 VSARMAPEEIIMDRPFLFVVRHNPTGTVLFM 373


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,202,236
Number of extensions: 54715
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 6
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.6 bits)