BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019613
(338 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P806|SAM50_XENTR Sorting and assembly machinery component 50 homolog OS=Xenopus
tropicalis GN=samm50 PE=2 SV=1
Length = 468
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 33/308 (10%)
Query: 38 EDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEA 97
DD DL E +PQ+K + +EN V RVH +G +TKD LI
Sbjct: 22 HDDADLVE----VEPQKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLIAH 64
Query: 98 ELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVET 155
E+ + A + E+++ ++ KL L F +VE+ +D+ G LP +V +V E
Sbjct: 65 EIGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEGEDALPNGLDVTFEVTEL 124
Query: 156 KTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLP 213
+ L+G T G + S V G LK N FG + +YG + E S G+ + P
Sbjct: 125 RR-LTGSYNTMV-GNNEGSMVLG-LKLPNLFGRAEKMTFQFSYG---TKETSYGLSFFKP 178
Query: 214 RFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDP 270
+ + ++ + +SS +E G+S + F I H L + WR L
Sbjct: 179 QVGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCL 237
Query: 271 SHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFL 330
+ +S +R + GH SSL +T D RN+ + P RG ++ G + FL
Sbjct: 238 ARTASFAIREESGHTLKSSLSHTMVIDSRNTSILPKRGALLKINQELAGYTGGD--VSFL 295
Query: 331 RQFFCLLL 338
++ F L L
Sbjct: 296 KEDFELQL 303
>sp|Q6PA35|SAM5B_XENLA Sorting and assembly machinery component 50 homolog B OS=Xenopus
laevis GN=samm50-b PE=2 SV=1
Length = 468
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 33/307 (10%)
Query: 39 DDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAE 98
DD DL E +P++K + +EN V RVH +G +TKD LI E
Sbjct: 23 DDADLVE----VEPEKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLIAHE 65
Query: 99 LDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVETK 156
+ + A + E+++ ++ KL L F +VE+ +D+ G +P +V +V E +
Sbjct: 66 IGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTSEGEDAVPNGLDVTFEVTELR 125
Query: 157 TPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLPR 214
L+G T G + S V G LK+ N FG + +YG + E S G+ + P+
Sbjct: 126 R-LTGSYNTMV-GNNEGSMVLG-LKFPNLFGRAEKMTFQFSYG---TKETSYGLSFFKPQ 179
Query: 215 FKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDPS 271
+ ++ + +SS +E G+S + F I H L + WR L +
Sbjct: 180 VGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCLA 238
Query: 272 HMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLR 331
+S +R + GH SSL +T D RN+ + P RG ++ G + FL+
Sbjct: 239 RTASFAIREESGHTLKSSLSHTMVIDSRNASILPKRGALLKINQELAGYTGGD--VSFLK 296
Query: 332 QFFCLLL 338
+ F L L
Sbjct: 297 EDFELQL 303
>sp|Q7ZWS5|SAM5A_XENLA Sorting and assembly machinery component 50 homolog A OS=Xenopus
laevis GN=samm50-a PE=2 SV=1
Length = 468
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 136/307 (44%), Gaps = 33/307 (10%)
Query: 39 DDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAE 98
DD DL E +PQ+K + +EN V RVH +G +TKD L+ E
Sbjct: 23 DDADLVE----VEPQKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLVAHE 65
Query: 99 LDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVETK 156
+ + A + E+++ ++ KL L F +VE+ +D+ G +P +V +V E +
Sbjct: 66 IGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEGEDAVPNGLDVTFEVTELR 125
Query: 157 TPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLPR 214
++G T G + S V G LK N FG + +YG + E S G+ + P+
Sbjct: 126 R-VTGSYNTMV-GNNEGSMVLG-LKLPNLFGRAEKMTFQFSYG---TKETSYGLSFFKPQ 179
Query: 215 FKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDPS 271
+ ++ + +SS +E G+S + F I H L + WR L +
Sbjct: 180 VGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCLA 238
Query: 272 HMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLR 331
+S T+R + GH SSL ++ D RN+ + P G ++ G + FL+
Sbjct: 239 RTASFTIREESGHTLKSSLSHSMVIDSRNASILPKSGALLKINQELAGYTGGD--VSFLK 296
Query: 332 QFFCLLL 338
+ F L L
Sbjct: 297 EDFELQL 303
>sp|Q5U3I0|SAM5B_DANRE Sorting and assembly machinery component 50 homolog B OS=Danio
rerio GN=samm50b PE=2 SV=1
Length = 469
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLD-- 136
V V ++G +TK+ + E+ + A + E+++ ++ +L L F VE+ +D
Sbjct: 47 VQHVNIEGLGRTKEDYLGYEISDVFTARNLVEVMRKSHEARQRLLRLGIFRDVEVVIDIS 106
Query: 137 SGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E K L+G T G + S V G +K N G G+
Sbjct: 107 EGADALPNGLDVTFEVTELKR-LTGSYNTMV-GNNEGSMVLG-IKLPNMLGRGEKLTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL---F 251
+YG + E S G+ + P+ T ++ + +SS KE G+S L
Sbjct: 164 SYG---TKETSYGLSFFKPQSGYFERNFTVNLY-KVTGQFPWSSLKETDRGVSTELSLPL 219
Query: 252 SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRG 308
+ H L + WR L + +S VR + GH S+L +T D RNS + P +G
Sbjct: 220 WMTDHTLKWEGVWRELGCLARSASFAVREESGHTLKSALSHTMVVDTRNSAILPRKG 276
>sp|Q9Y512|SAM50_HUMAN Sorting and assembly machinery component 50 homolog OS=Homo sapiens
GN=SAMM50 PE=1 SV=3
Length = 469
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 14/248 (5%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
V V G +TKD +I E+ + A + E+++ ++ KL L F V++ +D+
Sbjct: 47 VQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106
Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E + L+G T G + S V G LK N G +
Sbjct: 107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
+YG + E S G+ + PR + ++ + +SS +E G+S F I
Sbjct: 164 SYG---TKETSYGLSFFKPRPGNFERNFSVNLY-KVTGQFPWSSLRETDRGMSAEYSFPI 219
Query: 254 --RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
H + + WR L S +S VR++ GH SSL + D RNS + P RG
Sbjct: 220 WKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279
Query: 312 VSTTQIGG 319
++ G
Sbjct: 280 KVNQELAG 287
>sp|Q8BGH2|SAM50_MOUSE Sorting and assembly machinery component 50 homolog OS=Mus musculus
GN=Samm50 PE=1 SV=1
Length = 469
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 16/249 (6%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
V V G +TKD +I E+ + A + E+++ ++ KL L F V++ +D+
Sbjct: 47 VQHVHFDGLGRTKDDIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTC 106
Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E + L+G T G + S V G LK N G +
Sbjct: 107 HGEDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSI- 253
+YG + E S G+ + P+ + ++ + +SS +E G+S +S
Sbjct: 164 SYG---TKETSYGLSFFKPQPGNFERNFSVNLY-KVTGQFPWSSLRETDRGVS-AEYSFP 218
Query: 254 ---RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310
H + + WR L S +S VR++ GH SSL + D RNS + P RG
Sbjct: 219 LWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGAL 278
Query: 311 FVSTTQIGG 319
F ++ G
Sbjct: 279 FKVNQELAG 287
>sp|Q6AXV4|SAM50_RAT Sorting and assembly machinery component 50 homolog OS=Rattus
norvegicus GN=Samm50 PE=1 SV=1
Length = 469
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 14/248 (5%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
V V G +TKD +I E+ + A + E+++ ++ KL L F V++ +D+
Sbjct: 47 VQHVHFDGLERTKDDIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTC 106
Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E + L+G T G + S V G LK N G +
Sbjct: 107 HGEDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL---F 251
+YG + E S G+ + P+ + ++ + +SS +E G+S
Sbjct: 164 SYG---TKETSYGLSFFKPQPGNFEKNFSVNLY-KVTGQFPWSSLRETDRGVSAEYSFPL 219
Query: 252 SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
H + + WR L + +S VR++ GH SSL + D RNS + P RG
Sbjct: 220 CKTSHTVKWEGVWRELGCLARTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279
Query: 312 VSTTQIGG 319
++ G
Sbjct: 280 KVNQELAG 287
>sp|Q803G5|SAM5A_DANRE Sorting and assembly machinery component 50 homolog A OS=Danio
rerio GN=samm50a PE=2 SV=1
Length = 469
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 110/248 (44%), Gaps = 14/248 (5%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
V V + G +TK+ ++ E+ + +A + ++++ ++ KL L F VE+ +D+
Sbjct: 47 VQHVHIDGLGRTKEDILTYEIADVFHAKNLIDVMKKSHEARQKLLRLGIFRHVEVVIDTA 106
Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E + ++G T G + S V G +K N G +
Sbjct: 107 EGADALPNGLDVTFEVRELRR-MTGSYNTMV-GNNEGSMVLG-IKLPNVLGRAEKLTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
+YG + E S G+ + P+ + ++ + +SS +E G+S + F I
Sbjct: 164 SYG---TKETSYGLSFFKPQPGHFERNFSLNLY-KVTGQFPWSSLRETDRGVSAEISFPI 219
Query: 254 RH--HDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
H L + WR L + +S VR + GH SSL + D RNS + P +G
Sbjct: 220 WRTSHTLKWEGVWRELGCLARTASFAVREESGHSLKSSLAHAMVIDTRNSTILPRKGALL 279
Query: 312 VSTTQIGG 319
++ G
Sbjct: 280 KINQELAG 287
>sp|Q10478|SAM50_SCHPO SAM50-like protein SPAC17C9.06 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC17C9.06 PE=3 SV=1
Length = 475
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 21/265 (7%)
Query: 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNAT------TMQEIIQAANIINYKLREL 125
N +P+ + + V G T+ I L + + ++ E + A L
Sbjct: 39 NSTLPVGISSIRVTGAHHTRPSFIRKVLKTCLDTSKPAKSRSLLETLNAIQETTGNLMAF 98
Query: 126 ECFDSVEITLDSGPPELPGTSN--VIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYK 183
+++ I +D + G + V IQV E K L + GT G + + V ++ +
Sbjct: 99 NVYETANIKIDRASSSVSGDDDLDVTIQVKE-KPRLYVETGTDV-GNVEGN-VHANVLAR 155
Query: 184 NGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQS 243
N FG +L +++YG + +S P T + +D SS+ +
Sbjct: 156 NVFGGAELLSGNVSYGTRNRSTMSVNFETPVNADPKTRLRFNGHSNLRDNKSISSHDLLT 215
Query: 244 LGLSLGLFSIRHHDL-------VYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKF 296
G++L S++H DL NL WR +T + +S +VR + G SL YT+
Sbjct: 216 KGITL---SLQHQDLWSGEHLLSQNLLWRQVTHLTEYASPSVRLEAGDSLKQSLSYTYTR 272
Query: 297 DKRNSPLRPTRGYAFVSTTQIGGLA 321
D R+ + PT+G T ++ G
Sbjct: 273 DTRDHLMIPTKGDYVRQTLELAGFG 297
>sp|Q2HJ55|SAM50_BOVIN Sorting and assembly machinery component 50 homolog OS=Bos taurus
GN=SAMM50 PE=2 SV=1
Length = 469
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 18/268 (6%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
V V G +TKD +I E+ + A + E+++ ++ KL L F V++ +D+
Sbjct: 47 VQHVHFDGLGRTKDDIIMYEIRDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106
Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E + L+G T G + S V G LK N G +
Sbjct: 107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSI- 253
+YG + E S G+ + P+ + ++ + +SS +E G+S +S
Sbjct: 164 SYG---TKETSYGLSFFKPQPGNFDRNFSVNLY-KVTGQFPWSSLRETDRGVS-AEYSFP 218
Query: 254 ---RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310
H + + WR L S ++S VR++ GH SSL ++ D RNS + P RG
Sbjct: 219 TWKTSHTVKWEGVWRELGCLSRVASFAVRKESGHSLKSSLSHSMVIDSRNSSILPKRGAL 278
Query: 311 FVSTTQIGGLAPDSRCLRFLRQFFCLLL 338
++ G + FL++ F L L
Sbjct: 279 LKVNQELAGYTGGD--VSFLKEDFELQL 304
>sp|Q9V784|SAM50_DROME SAM50-like protein CG7639 OS=Drosophila melanogaster GN=CG7639 PE=2
SV=2
Length = 443
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 101/262 (38%), Gaps = 18/262 (6%)
Query: 75 VPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFD--SVE 132
+ RV V V G +T + + D + A+ Q+++ A L EL F SV
Sbjct: 21 ISARVDRVNVSGLLRTHNDYVMRAADGLFKASNFQDLMLEAMSTKSYLHELGIFKDVSVH 80
Query: 133 ITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLW 192
I + G P V + E + + G GT S E L N G G+
Sbjct: 81 IDVSRGADASPQGYEVTFKGNEM-SRMMGSAGTEIGQNEGSLRTE--LTIPNILGRGENI 137
Query: 193 DASLAYGFDRSAEVSAGVYLP----RFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSL 248
+Y R+ ++ + P RFK M+ +F Q+ D SS++ ++G L
Sbjct: 138 SLQGSYSSTRANDLQLKFWKPFFHTRFKENRPEMSFSIFRQT-DRFDISSFQTTNIGY-L 195
Query: 249 GLFSIRH-------HDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNS 301
FS H L Y A R + + +R G S L+Y+ +D R+
Sbjct: 196 VDFSAHTMVGVDLTHSLQYENAIRDVGLLNKSVPFAIRDHCGPKLASLLRYSVVYDNRDG 255
Query: 302 PLRPTRGYAFVSTTQIGGLAPD 323
+ PTRG S + GL +
Sbjct: 256 NVFPTRGIYLKSVNEYCGLGGN 277
>sp|C6V5K2|BAMA_NEORI Outer membrane protein assembly factor BamA OS=Neorickettsia
risticii (strain Illinois) GN=bamA PE=3 SV=1
Length = 738
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 110/267 (41%), Gaps = 37/267 (13%)
Query: 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELEC--FDSVEITL 135
R+ + + GNT+TKD +I E+ N ++ Q + + + + R L FD V I
Sbjct: 333 RIRKINISGNTRTKDTVIRREMLLSEN-----DLYQPSKVADSRRRILNLGFFDEVYIE- 386
Query: 136 DSGPPELPGTSNVIIQVVETKTP-----LSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGD 190
++ G N+I++V + P LSG G+ S VE +L FG D
Sbjct: 387 ---EHKIDG-QNLILEVRVKERPTGTLNLSGGYGSDVGFFGNFSFVENNL-----FGTSD 437
Query: 191 -----LWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLG 245
L ASL G + S E F A VF ++++ YK S+G
Sbjct: 438 RLVVELQKASL--GSNYSMEFQRKRIFDTF----ITAGASVFYKNRNEKANGLYKFSSVG 491
Query: 246 ----LSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNS 301
+S L L Y+L++ + D + +V+ G LS++ Y+ +K ++
Sbjct: 492 GDGSVSYSLRDDLRLHLGYSLSFDKIFDVEGDAPESVKSSAGTKILSAVSYSLFLNKLDN 551
Query: 302 PLRPTRGYAFVSTTQIGGLAPDSRCLR 328
P GY + G+ D + LR
Sbjct: 552 YFVPRYGYGVRFGNKFAGIGGDVKFLR 578
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,794,520
Number of Sequences: 539616
Number of extensions: 5993800
Number of successful extensions: 82926
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 366
Number of HSP's that attempted gapping in prelim test: 57445
Number of HSP's gapped (non-prelim): 14150
length of query: 338
length of database: 191,569,459
effective HSP length: 118
effective length of query: 220
effective length of database: 127,894,771
effective search space: 28136849620
effective search space used: 28136849620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)