Query 019613
Match_columns 338
No_of_seqs 233 out of 1228
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4775 Outer membrane protein 100.0 1.1E-32 2.4E-37 280.5 29.9 254 72-337 339-606 (766)
2 KOG2602 Predicted cell surface 100.0 4.4E-32 9.6E-37 251.5 11.7 254 78-338 37-297 (457)
3 PRK11067 outer membrane protei 100.0 7.8E-30 1.7E-34 266.5 27.0 283 44-337 299-615 (803)
4 TIGR03303 OM_YaeT outer membra 100.0 9.3E-29 2E-33 256.2 26.6 283 43-337 273-580 (741)
5 COG0729 Outer membrane protein 100.0 6.2E-29 1.3E-33 246.6 13.3 265 37-324 144-439 (594)
6 TIGR00992 3a0901s03IAP75 chlor 99.9 2.5E-25 5.5E-30 227.6 25.3 280 49-337 228-576 (718)
7 PLN03138 Protein TOC75; Provis 99.9 6E-22 1.3E-26 199.3 16.9 281 46-336 303-653 (796)
8 PF01103 Bac_surface_Ag: Surfa 99.4 3.9E-11 8.5E-16 111.8 18.2 150 184-337 1-160 (323)
9 PF07244 Surf_Ag_VNR: Surface 99.0 1.9E-09 4.1E-14 79.4 7.3 72 77-155 1-78 (78)
10 COG2831 FhaC Hemolysin activat 98.8 4.3E-07 9.2E-12 91.0 20.1 132 78-216 149-284 (554)
11 TIGR03303 OM_YaeT outer membra 98.3 1.7E-05 3.7E-10 82.6 16.2 112 42-157 190-321 (741)
12 PF03865 ShlB: Haemolysin secr 98.3 0.00027 5.9E-09 68.6 22.5 111 98-215 10-127 (404)
13 PRK11067 outer membrane protei 97.9 1.2E-05 2.5E-10 84.9 4.6 119 44-164 217-353 (803)
14 COG4775 Outer membrane protein 97.5 0.00013 2.8E-09 75.8 4.9 116 48-164 218-350 (766)
15 PLN03138 Protein TOC75; Provis 97.4 0.00061 1.3E-08 70.2 9.3 79 74-158 145-227 (796)
16 TIGR00992 3a0901s03IAP75 chlor 96.8 0.002 4.2E-08 67.1 6.3 72 78-156 109-180 (718)
17 PF08478 POTRA_1: POTRA domain 96.0 0.019 4.2E-07 40.7 5.5 68 78-155 2-69 (69)
18 PF09026 CENP-B_dimeris: Centr 95.3 0.0051 1.1E-07 46.0 0.3 20 50-69 40-59 (101)
19 PRK05529 cell division protein 94.2 0.2 4.3E-06 45.5 7.7 73 75-157 59-131 (255)
20 COG1589 FtsQ Cell division sep 88.4 1.3 2.7E-05 40.6 6.3 71 77-157 60-130 (269)
21 PF08479 POTRA_2: POTRA domain 87.8 2.2 4.7E-05 30.8 6.0 72 78-154 2-75 (76)
22 KOG1832 HIV-1 Vpr-binding prot 78.2 1.1 2.3E-05 46.9 1.4 7 90-96 1467-1473(1516)
23 PRK10775 cell division protein 73.1 14 0.0003 34.0 7.2 73 74-157 53-128 (276)
24 PF15243 ANAPC15: Anaphase-pro 58.6 7.8 0.00017 29.3 2.1 7 11-17 54-60 (92)
25 COG2831 FhaC Hemolysin activat 53.2 98 0.0021 31.5 9.5 61 75-135 71-132 (554)
26 PF05137 PilN: Fimbrial assemb 51.7 75 0.0016 22.4 6.4 50 74-137 11-60 (78)
27 KOG0299 U3 snoRNP-associated p 50.0 11 0.00025 36.5 2.2 63 3-67 20-87 (479)
28 PF03115 Astro_capsid: Astrovi 45.3 7 0.00015 41.1 0.0 14 49-62 709-722 (787)
29 PHA02644 hypothetical protein; 44.9 23 0.00049 25.9 2.6 11 11-21 66-76 (112)
30 KOG3593 Predicted receptor-lik 44.3 16 0.00035 33.5 2.1 12 9-20 246-257 (355)
31 TIGR02876 spore_yqfD sporulati 42.6 1.1E+02 0.0024 29.4 7.8 53 79-136 105-163 (382)
32 KOG0772 Uncharacterized conser 42.6 17 0.00038 35.9 2.2 8 100-107 250-257 (641)
33 PRK10049 pgaA outer membrane p 42.1 2.9E+02 0.0062 29.3 11.4 28 288-315 734-761 (765)
34 PHA02644 hypothetical protein; 38.9 23 0.00051 25.9 1.9 27 11-38 77-103 (112)
35 PF07780 Spb1_C: Spb1 C-termin 35.2 59 0.0013 28.7 4.1 34 89-125 74-108 (215)
36 KOG0943 Predicted ubiquitin-pr 34.2 28 0.0006 38.3 2.2 20 203-222 1914-1933(3015)
37 TIGR00927 2A1904 K+-dependent 34.0 25 0.00054 37.8 1.9 10 206-215 1011-1020(1096)
38 PTZ00415 transmission-blocking 33.9 20 0.00044 40.7 1.2 9 73-81 271-279 (2849)
39 PRK14574 hmsH outer membrane p 31.8 6.8E+02 0.015 26.9 12.3 11 255-265 776-786 (822)
40 PF11059 DUF2860: Protein of u 31.4 4.3E+02 0.0094 24.6 14.0 29 203-233 168-196 (297)
41 TIGR00927 2A1904 K+-dependent 31.1 33 0.00073 36.9 2.2 6 94-99 938-943 (1096)
42 PF10437 Lip_prot_lig_C: Bacte 29.5 69 0.0015 23.4 3.2 50 78-131 28-77 (86)
43 PF06898 YqfD: Putative stage 29.2 1.7E+02 0.0037 28.2 6.7 56 78-136 107-167 (385)
44 KOG1824 TATA-binding protein-i 28.0 31 0.00067 36.9 1.4 21 30-50 322-342 (1233)
45 KOG0972 Huntingtin interacting 25.9 20 0.00044 32.8 -0.3 39 11-49 129-175 (384)
46 KOG1834 Calsyntenin [Extracell 23.6 48 0.001 34.0 1.8 21 13-33 886-907 (952)
47 PF11702 DUF3295: Protein of u 22.8 51 0.0011 32.8 1.8 22 79-100 333-354 (507)
48 PRK10049 pgaA outer membrane p 22.3 4.5E+02 0.0097 27.8 8.9 29 288-316 655-685 (765)
49 PRK12766 50S ribosomal protein 21.7 33 0.00071 30.6 0.2 9 160-169 154-162 (232)
50 KOG1819 FYVE finger-containing 21.5 55 0.0012 32.3 1.7 40 24-63 427-470 (990)
51 KOG3130 Uncharacterized conser 20.0 68 0.0015 30.9 1.9 6 123-128 346-351 (514)
No 1
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-32 Score=280.45 Aligned_cols=254 Identities=24% Similarity=0.290 Sum_probs=219.5
Q ss_pred CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEE
Q 019613 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQ 151 (338)
Q Consensus 72 ~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~ 151 (338)
+.|.+++|.+|.|.|+.+|++.||+|+++++||++|+..+++.. .+||++||||++|+|.+.+.+ .+..|+|+|.
T Consensus 339 ~~g~~~~V~~i~i~gn~rT~D~VIrRE~~~~eGd~fn~~~v~~~---~~rL~~lgyF~~V~i~~~~~~--~~~~vdvvv~ 413 (766)
T COG4775 339 DEGDRVYVRRIRIRGNTRTKDYVIRREMRLKEGDVFNRKLVQRG---KRRLRRLGYFESVNIDTAPGS--GSDQVDVVVD 413 (766)
T ss_pred EcCCceeeeeeeecCCCccccHHhhhhhhcCCcchhhHHHHHHH---HHHHHhcCCceeeEEEeccCC--CCCeEEEEEE
Confidence 77999999999999999999999999999999999999999998 999999999999999999753 3448999999
Q ss_pred EEEccCc-eeeeeeEEecCCCcceEEEEEEEEecCCCCceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEe
Q 019613 152 VVETKTP-LSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQS 230 (338)
Q Consensus 152 v~E~~~~-~~~~~G~yst~~~~g~~~~~~~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~ 230 (338)
|+|+... +.+|+| |++. .|+.+.++|+.+|++|.|+.+++.+.++.. .+++.++|+.|++...++.+++++++..
T Consensus 414 VkE~~Tgsi~~G~G-y~s~--~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~-~~~~~l~ft~P~f~~~~~slg~~~f~~~ 489 (766)
T COG4775 414 VKERSTGSINFGLG-YGSD--SGLSGFASLSERNFLGTGQSLSLNANLGDK-QTSYSLSFTDPYFLDDRVSLGFNLFSNR 489 (766)
T ss_pred EEecCceeEEeccc-ccCC--CceEEEEEEEEeecCccccEEEEEEEeccc-eEEEEEEEecccccCCCceeEEEeEeee
Confidence 9999877 677777 9998 899999999999999999999999999999 8999999999999999999999998877
Q ss_pred ecc--cccc--CceEEEEeeEEEec----CceeEEEEEEEEEEEecCCCC-----CCcHHHHHHhCCCeeeeEEEEEEEe
Q 019613 231 QDW--LKFS--SYKEQSLGLSLGLF----SIRHHDLVYNLAWRTLTDPSH-----MSSNTVRRQLGHDFLSSLKYTFKFD 297 (338)
Q Consensus 231 ~d~--~~~~--~y~~~~~g~~~~l~----~~~~~~l~~~~~~~~~~~~~~-----~~s~~i~~~~~~~~~~~~~~~~~~d 297 (338)
.+. ..++ +|+..+.|+.+.++ .++++.++|.+.+..+..... ..+.....+.+.....+++++|+||
T Consensus 490 ~~~~~~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~tyD 569 (766)
T COG4775 490 YDTFDADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYASLGVKLQGGKSDLSSLSLGWTYD 569 (766)
T ss_pred ecccccccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCccccccccccccccCcceeEEEEEeEEEc
Confidence 620 0123 78888888888775 467788888888888774432 1122223344567889999999999
Q ss_pred cCCCCCCCCCceeeEEEEeeeecCCCccCceEEeeEeEEe
Q 019613 298 KRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLL 337 (338)
Q Consensus 298 ~rD~~~~Pt~G~~~~~~~e~aglgsd~~~~~f~k~~~~~~ 337 (338)
+||++++||+|+++++..+++++|+|.. |.|+++++.
T Consensus 570 ~rD~~~~Pt~G~~~~~~~e~~~~Ggd~~---~~K~~~~~~ 606 (766)
T COG4775 570 TRDNALFPTKGSYLSLTQEVAGLGGDIK---YYKLELDGS 606 (766)
T ss_pred CCCCcCCCCCCeEEeeeeEEeccCCcce---EEEEEEEEE
Confidence 9999999999999999999999998866 999998875
No 2
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=99.97 E-value=4.4e-32 Score=251.54 Aligned_cols=254 Identities=42% Similarity=0.636 Sum_probs=225.0
Q ss_pred EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcC--CCCCCCCeeEEEEEEEEc
Q 019613 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVET 155 (338)
Q Consensus 78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~--~~~~~~~~v~V~v~v~E~ 155 (338)
++..|.|.|+.+|++++|.+++...--....++++..+..+..+|+++++|++|.|.+|. ++++.|+...|++.|+|.
T Consensus 37 ~v~~V~v~Gl~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p~~~~Vt~~v~E~ 116 (457)
T KOG2602|consen 37 RVDHVIVSGLERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALPGGLVVTFLVTEP 116 (457)
T ss_pred eeeEEEeccccccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCCCceeEEEEeeec
Confidence 789999999999999999999965544555889999999999999999999999999997 345678889999999999
Q ss_pred cCceeeeeeE-EecCCCcceEEEEEEEEecCCCCceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEeeccc
Q 019613 156 KTPLSGQIGT-YTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL 234 (338)
Q Consensus 156 ~~~~~~~~G~-yst~~~~g~~~~~~~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~ 234 (338)
|+ +++..|+ .+. ....+.+.+..+|++|+|+.|.+++.++......++++|..|.+.+...++.+...+...||.
T Consensus 117 kr-~tg~~GT~~gn---~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~~~~~~~~~~~~~d~~ 192 (457)
T KOG2602|consen 117 KR-LTGSTGTDVGN---REGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLKTPFSSFSIFRTQDWM 192 (457)
T ss_pred ch-heeeccccccC---CCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCCcchhhhhhhhhhccc
Confidence 86 6777663 222 445788899999999999999999999977578999999999998887788888888888999
Q ss_pred cccCceEEEEeeEEEecC--c--eeEEEEEEEEEEEecCCCCCCcHHHHHHhCCCeeeeEEEEEEEecCCCCCCCCCcee
Q 019613 235 KFSSYKEQSLGLSLGLFS--I--RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310 (338)
Q Consensus 235 ~~~~y~~~~~g~~~~l~~--~--~~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~d~rD~~~~Pt~G~~ 310 (338)
+|++++....|+++.+.. . +.|.|.|+..|+.+..++..+++.++.|.|++++.++++++.+|+||..+.||+|++
T Consensus 193 ~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L~s~L~~tfv~D~Rd~~~~ptrG~~ 272 (457)
T KOG2602|consen 193 KWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHSLKSSLSYTFVFDKRDSSIIPTRGIL 272 (457)
T ss_pred ccccccccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHHHhhHHHHHhhcceEEEeccCCcccccccce
Confidence 999999999999998863 2 248899999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeecCCCccCceEEeeEeEEeC
Q 019613 311 FVSTTQIGGLAPDSRCLRFLRQFFCLLL 338 (338)
Q Consensus 311 ~~~~~e~aglgsd~~~~~f~k~~~~~~~ 338 (338)
+..+.|++|++++++ |+|.+++++.
T Consensus 273 ~k~~~e~~g~~~~~s---f~k~e~~lq~ 297 (457)
T KOG2602|consen 273 LKSTSELAGLFGDVS---FLKSELDLQK 297 (457)
T ss_pred eEeehhhcCcccchh---hhhhhhhhee
Confidence 999999999999866 9999988763
No 3
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=99.97 E-value=7.8e-30 Score=266.50 Aligned_cols=283 Identities=14% Similarity=0.157 Sum_probs=225.6
Q ss_pred cccccccCccCCCccchhHHHHHHhhhc---------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCccH
Q 019613 44 EEDDDAAQPQRKSRVDRPKIENLFRRIR---------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTM 108 (338)
Q Consensus 44 ~~ye~~k~~~~~~a~~~gy~~a~~~~~~---------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~ 108 (338)
..+++++..|++...++||+++...... ++|++|+|++|.|.|+.++++.+|+|++++++|++|+
T Consensus 299 ~~~~~~~~~i~~~~~~~GY~~a~v~~~~~~~~~~~~v~i~~~v~eG~~y~ig~I~i~Gn~~~~~~~l~r~l~~~~G~~~~ 378 (803)
T PRK11067 299 TKVTKMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLG 378 (803)
T ss_pred HHHHHHHHHHHHHHHhCCCCcceeeeccccCCCCCEEEEEEEEeeCCeEEEEEEEEECCccccchhhhhheeccccccCC
Confidence 3567788888899999999988763211 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCc-eeeeeeEEecCCCcceEEEEEEEEecCCC
Q 019613 109 QEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTP-LSGQIGTYTKGEAKSSTVEGSLKYKNGFG 187 (338)
Q Consensus 109 ~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~-~~~~~G~yst~~~~g~~~~~~~~~~Nl~G 187 (338)
.++|+++ +++|.++|||++|.+.+...+ ..++.++|.|.|+|++++ +.+++| |+++ .|+++.++|+++|+||
T Consensus 379 ~~~l~~~---~~~L~~~g~F~~V~~~~~~~~-~~~~~v~l~v~v~e~~~~~~~~g~g-y~s~--~g~~~~~~~~~~N~~G 451 (803)
T PRK11067 379 SDLVEQG---KERLNRLGFFETVDVDTQRVP-GSPDQVDVVYKVKERNTGSFNFGVG-YGTE--SGVSFQAGVQQDNWLG 451 (803)
T ss_pred HHHHHHH---HHHHHhcCCcccCccccccCC-CCCCeEEEEEEEEEccCCcEEEEee-ecCc--CCEEEEEEEEecccCC
Confidence 9999998 999999999999999987542 345689999999999877 777888 9998 8999999999999999
Q ss_pred CceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEeeccc--cccCceEEEEeeEEEec----CceeEEEEEE
Q 019613 188 YGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL--KFSSYKEQSLGLSLGLF----SIRHHDLVYN 261 (338)
Q Consensus 188 ~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~--~~~~y~~~~~g~~~~l~----~~~~~~l~~~ 261 (338)
.|+++++.+..+.. .+.+.++|..|++...++.+.+++++...+.. ...+|+.++.++++.++ ..+.+.+++.
T Consensus 452 ~G~~l~l~~~~s~~-~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~ 530 (803)
T PRK11067 452 TGNSVGINGTKNDY-QTYAELSVTDPYFTVDGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLG 530 (803)
T ss_pred cCcEEEEEEEeccc-eEEEEEEEeCCcCcCCCceEEEEEEEEeccccccccccceeeEEEEEEEEEEEecCceEEEEEEE
Confidence 99999999999987 78899999999988777777777766543211 13467777777777664 3456666666
Q ss_pred EEEEEecCCCCCCc-HHHHHHh-----------CCCeeeeEEEEEEEecCCCCCCCCCceeeEEEEeeeecCCCccCceE
Q 019613 262 LAWRTLTDPSHMSS-NTVRRQL-----------GHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRF 329 (338)
Q Consensus 262 ~~~~~~~~~~~~~s-~~i~~~~-----------~~~~~~~~~~~~~~d~rD~~~~Pt~G~~~~~~~e~aglgsd~~~~~f 329 (338)
+.+.++........ ....... ......+++++|++|++|++++|++|+++.++++.+.++++.+ |
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~~~~Pt~G~~~~~~~~~~~~gs~~~---f 607 (803)
T PRK11067 531 YVHNSLSNMQPQVAMWRYLYSMGENPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNE---Y 607 (803)
T ss_pred EEEEEeecCCcchhHHHHHHHcCCccccccccccceEEEEEEEEEEEecCcCCCCCCCCeeEEEEEEEEeecccce---E
Confidence 66665543211100 0001111 1134568999999999999999999999999998888888866 9
Q ss_pred EeeEeEEe
Q 019613 330 LRQFFCLL 337 (338)
Q Consensus 330 ~k~~~~~~ 337 (338)
.|..++++
T Consensus 608 ~k~~~~~~ 615 (803)
T PRK11067 608 YKVTLDTA 615 (803)
T ss_pred EEEEEEEE
Confidence 99998875
No 4
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=99.97 E-value=9.3e-29 Score=256.22 Aligned_cols=283 Identities=20% Similarity=0.225 Sum_probs=228.9
Q ss_pred ccccccccCccCCCccchhHHHHHHhhhc---------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCcc
Q 019613 43 LEEDDDAAQPQRKSRVDRPKIENLFRRIR---------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATT 107 (338)
Q Consensus 43 ~~~ye~~k~~~~~~a~~~gy~~a~~~~~~---------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y 107 (338)
.+..++++..|.+...++||..+...... ++|++++|++|.|.|+.++++.+|++++++++|++|
T Consensus 273 ~~~~~~~~~~l~~~y~~~Gy~~~~v~~~~~~~~~~~~v~v~~~v~eg~~~~i~~i~i~g~~~t~~~~i~~~~~~~~G~~~ 352 (741)
T TIGR03303 273 RSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDPGKRVYVRRINISGNTRTRDEVIRRELRQLEGDWY 352 (741)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeEEEecceECCCCCEEEEEEEEccCCeEEEEEEEEECCCccccceeehhhccCccccc
Confidence 34455677777777788888766543211 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCc-eeeeeeEEecCCCcceEEEEEEEEecCC
Q 019613 108 MQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTP-LSGQIGTYTKGEAKSSTVEGSLKYKNGF 186 (338)
Q Consensus 108 ~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~-~~~~~G~yst~~~~g~~~~~~~~~~Nl~ 186 (338)
+.+.|+++ +++|.++|+|+.|.+.+.+. ..++.++|.|.|+|++++ +.+++| |+++ .++++.++|+++|+|
T Consensus 353 ~~~~l~~~---~~~L~~lg~f~~v~~~~~~~--~~~~~~~v~i~v~e~~~~~~~~~~g-~~~~--~~~~~~~~~~~~Nl~ 424 (741)
T TIGR03303 353 SLSKIKRS---KRRLERLGYFETVNIETVPV--GSPDQVDLNVKVKEQPTGSISFGVG-YGSS--SGLSFNASISERNFL 424 (741)
T ss_pred CHHHHHHH---HHHHHhCCCCceeeeeecCC--CCCCEEEEEEEEEEccccEEEEeee-ecCC--CceEEEEEEEEeccc
Confidence 99999998 99999999999999998753 457789999999999866 777777 9886 889999999999999
Q ss_pred CCceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEeeccc--cccCceEEEEeeEEEec----CceeEEEEE
Q 019613 187 GYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL--KFSSYKEQSLGLSLGLF----SIRHHDLVY 260 (338)
Q Consensus 187 G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~--~~~~y~~~~~g~~~~l~----~~~~~~l~~ 260 (338)
|.|+.+++.+.++.. .+.+.++|..|++...++.+.+++++...+.. ....|...+.++++.++ ..+.+.+++
T Consensus 425 G~g~~l~~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~ 503 (741)
T TIGR03303 425 GTGNRLSLSANKSSL-STSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSDYKTKTYGGSINLGYPITEYLRVSLGY 503 (741)
T ss_pred ccccEEEEEEEeccc-eEEEEEEEECCCCcCCCeEEEEEEEEEEcccccccccCceeEEEEEEEEEEEEecCceEEEEEE
Confidence 999999999999998 78899999999998888888888877655321 13557777766666553 456777777
Q ss_pred EEEEEEecCCCCC---CcHHHHHHhCCCeeeeEEEEEEEecCCCCCCCCCceeeEEEEeeeecCCCccCceEEeeEeEEe
Q 019613 261 NLAWRTLTDPSHM---SSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLL 337 (338)
Q Consensus 261 ~~~~~~~~~~~~~---~s~~i~~~~~~~~~~~~~~~~~~d~rD~~~~Pt~G~~~~~~~e~aglgsd~~~~~f~k~~~~~~ 337 (338)
.+.+.++...... ....+..+.+.....+++++++||++|++++|++|+++++.+++++++++.+ |.|..++++
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rD~~~~P~~G~~~~~~~~~~~~g~~~~---f~k~~~~~~ 580 (741)
T TIGR03303 504 GYEQNKIKNSSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPTKGSIQRLSQEFAGPGGDLK---YYKLTYDSE 580 (741)
T ss_pred EEEEEEEecCCCcchhHHHHHHHhCCceEEEEEEEEEEEeCCcCCCCCCCCcEEEEEEEEeeecCCce---EEEEEEEEE
Confidence 7777766532211 1112333456678899999999999999999999999999999988887765 999988875
No 5
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=6.2e-29 Score=246.57 Aligned_cols=265 Identities=17% Similarity=0.162 Sum_probs=203.4
Q ss_pred ccCCCCccccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhh
Q 019613 37 EEDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELD 100 (338)
Q Consensus 37 ~~~~~~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~ 100 (338)
..+...-.-|+.+|..+.+.+.++||++|.|+..+ ++|++|.+|.|.|+|..++++.+|+++++
T Consensus 144 ~G~~~~~~~~~n~k~~i~~~~~~~gy~~a~~~~~r~~v~~~~~~a~~~~~~dsG~~y~~g~v~~~g~~r~~~~~~~~~~~ 223 (594)
T COG0729 144 EGEDLNQGTYENAKSSIVRALLRKGYFLARFTKSRLVVDPATHTADVDLNYDSGRRYRFGPVTVEGSQRIDEEYLQNLVP 223 (594)
T ss_pred cCCccccchhhhhHHHHHHHHHHcCcchhcccccccccccccceEEEEEeecccceEEeCcEEEccceecCHHHHhhccc
Confidence 34445667899999999999999999999998888 99999999999999988899999999999
Q ss_pred hhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCC-CeeEEEEEEEEccCc-eeeeeeEEecCCCcceEEEE
Q 019613 101 AIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELP-GTSNVIIQVVETKTP-LSGQIGTYTKGEAKSSTVEG 178 (338)
Q Consensus 101 ~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~-~~v~V~v~v~E~~~~-~~~~~G~yst~~~~g~~~~~ 178 (338)
+++|++|+++.|.++ +++|.++++|++|.|.+... +..+ ..+||.|.|.|++.+ +.+|+| |+|+ .|+++++
T Consensus 224 ~~~G~~Y~~~~l~~~---~~rl~~~~~F~sv~v~~~~~-~~~~~~~~pv~v~~~~rk~~~~~lG~g-yst~--~G~~~~~ 296 (594)
T COG0729 224 FKYGLPYDPEDLAEL---NQRLRQTGYFSSVVVQPADK-QAGPDGLLPVKVSVSERKENTFELGVG-YSTD--VGAGLEA 296 (594)
T ss_pred cCCCCcCCHHHHHHH---HHHHhhcCceeeEEEecCcc-ccCcCceeceEEEecccccceEEeeeE-Eecc--ccccceE
Confidence 999999999999998 99999999999999999864 2333 358999999999987 788888 9998 9999999
Q ss_pred EEEEecCCCCceeEEEEEEeecccceEEEEEEeccccCCC-CCCeeEEEEEEeeccccccCceEEEEe--eEE--Eec--
Q 019613 179 SLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGL-VTPMTARVFLQSQDWLKFSSYKEQSLG--LSL--GLF-- 251 (338)
Q Consensus 179 ~~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~-~~~~~~~~~~~~~d~~~~~~y~~~~~g--~~~--~l~-- 251 (338)
.|.++|+|++||++.+++.++.. .+.+.+.|.+|++..+ .....+..++...+-... .....+ +++ ++.
T Consensus 297 ~w~~~~~~~~~~~l~~~~~is~~-~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~t---~~~~~~~~l~~~~~~~~~ 372 (594)
T COG0729 297 GWEKRNLFGRGHSLRIESEISAP-LQTLEATYKAPLLFNPLGQYNPVSAGFDRLDLYDT---ESDAYTESLSASRGWDAS 372 (594)
T ss_pred EeeeecccCcceeEeeeeeeccc-hhcCceEEEeecccCCccceeccccccccchhhcc---ccccccceeeeeehhccc
Confidence 99999999999999999999999 7889999999998876 355555555544331111 111111 222 111
Q ss_pred CceeEEE--EEEEEEEEecCCCCCCcHHHHHHhCCCeeee--EEEEEEEecCCCCCCCCCceeeEEEEeee--ecCCCc
Q 019613 252 SIRHHDL--VYNLAWRTLTDPSHMSSNTVRRQLGHDFLSS--LKYTFKFDKRNSPLRPTRGYAFVSTTQIG--GLAPDS 324 (338)
Q Consensus 252 ~~~~~~l--~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~--~~~~~~~d~rD~~~~Pt~G~~~~~~~e~a--glgsd~ 324 (338)
..|...+ +|.+.+... ....++..+.. +.+++++|+ |+.++|++|+++.+.+..+ .++|+.
T Consensus 373 ~~~~~~~~~r~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~-dd~~~Pt~G~~~~~~~~~s~~~~~s~~ 439 (594)
T COG0729 373 LGWQRSLALRFSYDNFRQ-----------GDISGKTSLLTPGVEFSYTRDT-DDGLFPTWGDRLDLTIGPSYEALGSDV 439 (594)
T ss_pred cCceeEEEEEEEcccccc-----------ccccCCceEEecceEEEEEEcc-CCCCCCCccceeeeeeeeccccccCch
Confidence 1223322 222222111 11123333454 455555555 9999999999999999876 577765
No 6
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=99.94 E-value=2.5e-25 Score=227.63 Aligned_cols=280 Identities=15% Similarity=0.045 Sum_probs=193.2
Q ss_pred ccCccCCCccchhHHHHHHhhh--c---------CCCC--CeEEEEEEEECCC---ccCHHHHHHHhh--hhccCccHHH
Q 019613 49 AAQPQRKSRVDRPKIENLFRRI--R---------NGPV--PLRVHDVIVKGNT---KTKDCLIEAELD--AIRNATTMQE 110 (338)
Q Consensus 49 ~k~~~~~~a~~~gy~~a~~~~~--~---------~~g~--~~~~g~V~i~G~~---~t~~~~I~r~l~--~~~G~~y~~~ 110 (338)
....|++.-.++||.-|..... . .+|+ .++|..|.+.|+. +|++.+|+|+++ +++|++|+..
T Consensus 228 ~~~~I~~~Y~~~GY~~A~V~~~~~~~~~~V~l~V~EG~i~~I~V~~i~~~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~ 307 (718)
T TIGR00992 228 IRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCEVVEGDITNLQIQFFDKLGNVVEGNTRDPVVTRELPKQLKPGDVFNIE 307 (718)
T ss_pred HHHHHHHHHHHCCceeEEEeccCcCCCCEEEEEEeccceeEEEEEEecccCccccCccchHHHHHHHHhccCCCCcCCHH
Confidence 3455555666777765433211 1 2233 3333333334654 799999999999 9999999999
Q ss_pred HHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCc-e------eeeee---E-EecCCCcceEEEEE
Q 019613 111 IIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTP-L------SGQIG---T-YTKGEAKSSTVEGS 179 (338)
Q Consensus 111 ~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~-~------~~~~G---~-yst~~~~g~~~~~~ 179 (338)
+|+++ +++|+++++|++|.|.+.+. ...++.++|.|.|+|++++ . ++.+| . |+++ .|+++.++
T Consensus 308 ~Le~~---~~rL~~lg~F~~V~V~~~p~-~~~~g~v~V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss~--~G~~g~i~ 381 (718)
T TIGR00992 308 AGKTA---LQNINSLGLFSNIEVNPRPD-EMNEGEIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLAS--SQPGGTIT 381 (718)
T ss_pred HHHHH---HHHHHcCCCcccceeeccCC-CCCCCeEEEEEEEEECCCCceeeeccccccccCCCcccccc--cceeEEee
Confidence 99998 99999999999999999864 2367899999999999864 2 22222 1 4555 79999999
Q ss_pred EEEecCCCCceeEEEEEEee-----cccceEEEEEEeccccCCC----CCCeeEEEEEEeeccc---------cccCceE
Q 019613 180 LKYKNGFGYGDLWDASLAYG-----FDRSAEVSAGVYLPRFKGL----VTPMTARVFLQSQDWL---------KFSSYKE 241 (338)
Q Consensus 180 ~~~~Nl~G~G~~l~~~~~~s-----~~~~~~~~~~y~~P~~~~~----~~~~~~~~~~~~~d~~---------~~~~y~~ 241 (338)
|.++|+||.||++.+++.++ .. .+.+.++|++||+... +.++.+++++.+.... .+.+|..
T Consensus 382 ~~~rNl~G~g~~l~~~~~~s~~~~~~~-~~~~~lsy~~P~i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~ 460 (718)
T TIGR00992 382 FEHRNLQGLNRSLGGSVTTSNFLNPQD-DLLFKVEYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWV 460 (718)
T ss_pred EEeccCcccCcEEEEEEEeccccCCCc-ceEEEEEEecCccCCCCCCccceEEEEEEEeccccccccCCcccccCCCceE
Confidence 99999999999999999998 66 7899999999998765 6678888866543211 1245777
Q ss_pred EEEeeEEEecC----ceeEEEEE------EEEEEEecCCCCCC---cHHH--------HHHhCCCeeeeEEEEEEEecCC
Q 019613 242 QSLGLSLGLFS----IRHHDLVY------NLAWRTLTDPSHMS---SNTV--------RRQLGHDFLSSLKYTFKFDKRN 300 (338)
Q Consensus 242 ~~~g~~~~l~~----~~~~~l~~------~~~~~~~~~~~~~~---s~~i--------~~~~~~~~~~~~~~~~~~d~rD 300 (338)
.+.|+++.++. .+....+| .+....+.+..... +..+ ....+...++++.++++||++|
T Consensus 461 ~r~G~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rD 540 (718)
T TIGR00992 461 DRAGVKANITENFARQSKFTYGLVMEEIFTRDESRHINANGQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTN 540 (718)
T ss_pred EEEEEEEEEeeccCcccccccCeEEEEEeeeeeeeeccccCccccccccccccCCcceecCCCccceEEEEEEEEEecCC
Confidence 88888776642 22222222 11111111110000 0000 0012334678999999999999
Q ss_pred CCCCCCCceeeEEEEeeee-cCCCccCceEEeeEeEEe
Q 019613 301 SPLRPTRGYAFVSTTQIGG-LAPDSRCLRFLRQFFCLL 337 (338)
Q Consensus 301 ~~~~Pt~G~~~~~~~e~ag-lgsd~~~~~f~k~~~~~~ 337 (338)
++++|++|+++.++++.+. ++++. ..|.|+.++++
T Consensus 541 n~l~Pt~G~~~~~~~e~~~~~g~~~--~~f~r~~~~~~ 576 (718)
T TIGR00992 541 FVNGPTVGSRVRFQVDQGLGVGSGF--PFFNRHQLTYT 576 (718)
T ss_pred CCCCCCcccEEEEEEEeccCcCCCC--ceEEEEEEEEE
Confidence 9999999999999999884 67764 23888888764
No 7
>PLN03138 Protein TOC75; Provisional
Probab=99.88 E-value=6e-22 Score=199.32 Aligned_cols=281 Identities=15% Similarity=0.073 Sum_probs=185.2
Q ss_pred cccccCccCCCccchhHHHHHHhhhc-----------CCCCCeEEE-----EE--EEECCCccCHHHHHHHhh--hhccC
Q 019613 46 DDDAAQPQRKSRVDRPKIENLFRRIR-----------NGPVPLRVH-----DV--IVKGNTKTKDCLIEAELD--AIRNA 105 (338)
Q Consensus 46 ye~~k~~~~~~a~~~gy~~a~~~~~~-----------~~g~~~~~g-----~V--~i~G~~~t~~~~I~r~l~--~~~G~ 105 (338)
-++....|+..-.++||+.+...-.. .+|...+|. +| .|+|+ |+|.+|+|+|+ +++|+
T Consensus 303 Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~drig~~i~GN--TrD~VIRREL~~~lkeGd 380 (796)
T PLN03138 303 LQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQDKLGNVVEGN--TQLPIIDRELPKQLRQGH 380 (796)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEecccccccccCC--ccCeEEeeecccccCCCc
Confidence 33455666677778888766544332 334444444 44 45564 58999999997 48999
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCc---eeeeeeEEecC-------CCcceE
Q 019613 106 TTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTP---LSGQIGTYTKG-------EAKSST 175 (338)
Q Consensus 106 ~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~---~~~~~G~yst~-------~~~g~~ 175 (338)
+|+...|+++ .++|+++|||++|.|.+.+. ...++.|+|+|.|+|..+. ++++.| |+.. ...++.
T Consensus 381 ~fN~~~l~~s---lqRL~~LGlFedV~V~~~Pg-~~~p~~VdL~V~VkE~e~~t~~ls~g~g-~~~G~g~~Psl~S~g~~ 455 (796)
T PLN03138 381 IFNIEAGKQA---LRNINSLALFSNIEVNPRPD-EKNEGGIVVEIKLKELEPKSAEVSTEWS-IVPGRGGRPTLASIQPG 455 (796)
T ss_pred ccCHHHHHHH---HHHHHhCCCCceeEEEeccC-CCCCCeEEEEEEEEEccCCceeEecccc-cccccCCCCccccccce
Confidence 9999999998 99999999999999999854 2357899999999994433 333333 3221 125667
Q ss_pred EEEEEEEecCCCCceeEEEEEEee-----cccceEEEEEEeccccCC--CC--CCeeEEEEEEeeccc------cccCce
Q 019613 176 VEGSLKYKNGFGYGDLWDASLAYG-----FDRSAEVSAGVYLPRFKG--LV--TPMTARVFLQSQDWL------KFSSYK 240 (338)
Q Consensus 176 ~~~~~~~~Nl~G~G~~l~~~~~~s-----~~~~~~~~~~y~~P~~~~--~~--~~~~~~~~~~~~d~~------~~~~y~ 240 (338)
+.++++++||+|+|+++.++++++ .. ...+.++|+.||+.. .+ .++.++++..+.... ....+.
T Consensus 456 Gtvs~~~~NL~G~g~~L~~~v~~s~~~~g~~-d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~ 534 (796)
T PLN03138 456 GTVSFEHRNIQGLNRSILGSVTSSNLLNPQD-DLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVP 534 (796)
T ss_pred eEEEEeccccccccceEEEEEEeecccCCcc-ceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCC
Confidence 889999999999999999999985 34 678999999999966 22 667777766542210 011122
Q ss_pred ---EEEEeeEEEecC----ceeEEEEEEEEEEEecCCCCCCc-----------------HHHHHHhCCCeeeeEEEEEEE
Q 019613 241 ---EQSLGLSLGLFS----IRHHDLVYNLAWRTLTDPSHMSS-----------------NTVRRQLGHDFLSSLKYTFKF 296 (338)
Q Consensus 241 ---~~~~g~~~~l~~----~~~~~l~~~~~~~~~~~~~~~~s-----------------~~i~~~~~~~~~~~~~~~~~~ 296 (338)
..+.|+.+.+.+ .+.+.+++.+....+.+...... +......+.-.+..+.+.++|
T Consensus 535 ~~~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~tr 614 (796)
T PLN03138 535 PIWVDRAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITR 614 (796)
T ss_pred cceEeecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEe
Confidence 455666666642 11233333333322222111100 000111233456678899999
Q ss_pred ecCCCCCCCCCceeeEEEEeee-ecCCCccCceEEeeEeEE
Q 019613 297 DKRNSPLRPTRGYAFVSTTQIG-GLAPDSRCLRFLRQFFCL 336 (338)
Q Consensus 297 d~rD~~~~Pt~G~~~~~~~e~a-glgsd~~~~~f~k~~~~~ 336 (338)
|++|++..|++|.++.+.+|.+ +++++. ..|=|+.+.+
T Consensus 615 d~~~~~~~pt~G~~~~~~~EQ~lpvg~~~--~~fNR~~~~~ 653 (796)
T PLN03138 615 DNTKFVNGAVVGDRHIFQVDQGLGIGSKF--PFFNRHQLTV 653 (796)
T ss_pred ccCCCCCCCCccceEEEEeeeeccccCCC--CceEEEEEEE
Confidence 9999999999999999999987 555542 3355555544
No 8
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=99.37 E-value=3.9e-11 Score=111.80 Aligned_cols=150 Identities=29% Similarity=0.385 Sum_probs=113.2
Q ss_pred cCCCCceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEeeccccccCceEEEEeeEEEec----CceeEEEE
Q 019613 184 NGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLF----SIRHHDLV 259 (338)
Q Consensus 184 Nl~G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~g~~~~l~----~~~~~~l~ 259 (338)
|+||.|+++++.+.++.. .+.+.++|..|++...++.+.+++++.+.+......|..+..++++.+. ..+.+.++
T Consensus 1 N~~G~g~~~~~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (323)
T PF01103_consen 1 NLFGTGQSLSVSATYGSD-SQSLSLSYTNPYFFGDRLSLGFSLYYSSSDSDEFSSYDEQTFGFSLSLGYRISPNWSLSLG 79 (323)
T ss_pred CCCCCCeEEEEEEEEcCc-eEEEEEEEEEcCCCCCCEEEEEEEEEEEccccccccceeeeccccccceeEcccceEEEEE
Confidence 899999999999999886 8999999999998887888888887764332234567777766666553 34556666
Q ss_pred EEEEEEEecCCCCCCcHH----HHHHhCCCeeeeEEEEEEEecCCCCCCCCCceeeEEEEeeee--cCCCccCceEEeeE
Q 019613 260 YNLAWRTLTDPSHMSSNT----VRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGG--LAPDSRCLRFLRQF 333 (338)
Q Consensus 260 ~~~~~~~~~~~~~~~s~~----i~~~~~~~~~~~~~~~~~~d~rD~~~~Pt~G~~~~~~~e~ag--lgsd~~~~~f~k~~ 333 (338)
+.+.+.++.......... .....++....++.++++||++|+.++|++|+++.+..+.+. ++++.+ |.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~~~~~~~~---f~k~~ 156 (323)
T PF01103_consen 80 YSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPTKGWYLSFSLEFSGKFLGSDSN---FYKFE 156 (323)
T ss_pred EEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCccceEEEEEEEEecccCCCcce---EEEEE
Confidence 666666654432211000 122356778899999999999999999999999999999886 777765 99999
Q ss_pred eEEe
Q 019613 334 FCLL 337 (338)
Q Consensus 334 ~~~~ 337 (338)
++++
T Consensus 157 ~~~~ 160 (323)
T PF01103_consen 157 LSAR 160 (323)
T ss_pred EEEE
Confidence 8875
No 9
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.97 E-value=1.9e-09 Score=79.42 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=64.0
Q ss_pred eEEEEEEEECC-CccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhh----cCCC-cceeeEEEcCCCCCCCCeeEEEE
Q 019613 77 LRVHDVIVKGN-TKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLR----ELEC-FDSVEITLDSGPPELPGTSNVII 150 (338)
Q Consensus 77 ~~~g~V~i~G~-~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~----~~g~-F~~V~v~~~~~~~~~~~~v~V~v 150 (338)
|+|++|.|.|+ ..++++.|++.+.+++|++|++..+.+. .++|. ++|| |..|.+.+... ++.|+|.+
T Consensus 1 ~~i~~I~i~Gn~~~~~~~~l~~~l~~~~G~~~~~~~i~~~---~~~l~~~y~~~Gy~~~~V~~~~~~~----~~~v~l~~ 73 (78)
T PF07244_consen 1 YRIGEINIEGNLKKFSDEELRRELGLKPGDPFNPEKIEED---IERLQDYYKDKGYFFAKVSPEIDPD----DNTVDLTF 73 (78)
T ss_dssp CEEEEEEEESE-SSSHHHHHHHCHSS-TTSBECHHHHHHH---HHHHHHHHHTTSCSEEEEEEEEEEE----TTEEEEEE
T ss_pred CEEEEEEEEcCceEeCHHHHHhhcCCCCCCEeCHHHHHHH---HHHHHHHHHHcCCcceEEEEEEEEc----CCEEEEEE
Confidence 57999999997 8999999999999999999999999998 99999 9999 88898888743 37899999
Q ss_pred EEEEc
Q 019613 151 QVVET 155 (338)
Q Consensus 151 ~v~E~ 155 (338)
.|+|.
T Consensus 74 ~V~Eg 78 (78)
T PF07244_consen 74 NVDEG 78 (78)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 10
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=98.82 E-value=4.3e-07 Score=91.02 Aligned_cols=132 Identities=20% Similarity=0.275 Sum_probs=111.0
Q ss_pred EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccC
Q 019613 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKT 157 (338)
Q Consensus 78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~ 157 (338)
+|++|.|.|....++..++..+|..+|++.+...|++. ...|..+.--+ |.+.+.++ ..++.-+|+|++++.+
T Consensus 149 ~i~~i~i~g~~~~~~~~~~~~~p~~~g~~Ln~~~lEq~---l~~l~~~P~~q-a~~~l~pg--~~~G~S~l~i~~~~~~- 221 (554)
T COG2831 149 RIEDIRITGDSDLRSVALRSLFPAHRGDPLNLRDLEQG---LELLNRLPGVQ-ADAELVPG--SEPGESDLVIKVQQGK- 221 (554)
T ss_pred EeeeEEEcCCCccchhhHHhhccccCCCCCCHHHHHHH---HHHhhhCcccc-ceeEEccC--CCCCccEEEEEeeeCC-
Confidence 57899999998888899999999999999999999997 88888887776 77777754 6788899999999975
Q ss_pred ceeeeeeE--EecCCCcceEEEEEEEEecCCCCceeEEEEEEeecccc--eEEEEEEeccccC
Q 019613 158 PLSGQIGT--YTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRS--AEVSAGVYLPRFK 216 (338)
Q Consensus 158 ~~~~~~G~--yst~~~~g~~~~~~~~~~Nl~G~G~~l~~~~~~s~~~~--~~~~~~y~~P~~~ 216 (338)
++.+.+++ |++.....+++.+++...|++|.|+.+++++..+.... ..+++.|..|+-.
T Consensus 222 ~~~~~~~~DN~G~~~tG~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~ 284 (554)
T COG2831 222 PWRVSASADNYGSKSTGRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGY 284 (554)
T ss_pred CeEEEEEecCCCCcCccceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEcc
Confidence 45788886 66554456789999999999999999999999866523 3799999999964
No 11
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=98.31 E-value=1.7e-05 Score=82.65 Aligned_cols=112 Identities=8% Similarity=0.049 Sum_probs=87.3
Q ss_pred CccccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccC
Q 019613 42 DLEEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNA 105 (338)
Q Consensus 42 ~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~ 105 (338)
+.+..++.+..|.+.-.++||+++...... ++|++++|++|.|.|+..+++..|++.+++++|+
T Consensus 190 ~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~~~~~~~~~~~i~~~v~eG~~~~i~~i~i~g~~~~~~~~l~~~~~~~~G~ 269 (741)
T TIGR03303 190 SKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEGEQYKFGEVTIEGDLIGPDEELKKLLKIKKGE 269 (741)
T ss_pred CHHHHhhhHHHHHHHHHhCCcEEEEEcCCEEEECCCCCEEEEEEEeccCCCEEEEeEEEEeccCCcHHHHHHhhcCCCCC
Confidence 345567778888888889999988654211 7899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhhc----CCCcceeeEEEcCCCCCCCCeeEEEEEEEEccC
Q 019613 106 TTMQEIIQAANIINYKLRE----LECFDSVEITLDSGPPELPGTSNVIIQVVETKT 157 (338)
Q Consensus 106 ~y~~~~l~~~~~~~~~L~~----~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~ 157 (338)
+|+.+.+.++ .++|.+ .||+ .+.|.+...+....+.++|.+.|.|.++
T Consensus 270 ~~~~~~~~~~---~~~l~~~y~~~Gy~-~~~v~~~~~~~~~~~~v~v~~~v~eg~~ 321 (741)
T TIGR03303 270 VFNRSKVTKI---VKAIKDLLGEKGYA-FANVNPRPQINDENKTVDLTFKVDPGKR 321 (741)
T ss_pred eeCHHHHHHH---HHHHHHHHHhcCCc-eeEEEecceECCCCCEEEEEEEEccCCe
Confidence 9999999987 554443 6764 4556554322223457999999999974
No 12
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=98.28 E-value=0.00027 Score=68.58 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=74.0
Q ss_pred HhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeeeE--EecCCCcceE
Q 019613 98 ELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGT--YTKGEAKSST 175 (338)
Q Consensus 98 ~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G~--yst~~~~g~~ 175 (338)
.+|.++|++.+-..|++. ..+|.++.-- .|.+.+.|+ ..++.-+|+|.+++.+ ++.+.+++ +++..+...+
T Consensus 10 ~fP~~~G~~LnlrdlEQg---le~lnrl~~~-~~~~~i~PG--~~~G~S~i~i~~~~~~-~~~~~~~~DN~Gs~~TG~~q 82 (404)
T PF03865_consen 10 AFPNRKGKPLNLRDLEQG---LEQLNRLPSN-QAKIDILPG--EEPGTSDIVIENQPSK-PWSGSLSLDNSGSKSTGRYQ 82 (404)
T ss_dssp -STT-TT-B--HHHHHHH---HHHH-S-SSE-EEEEEEEE---SSTTEEEEEEEEEE-S-S-EEEEEEEE-SSS-SS-EE
T ss_pred cCCCCCCCCCCHHHHHHH---HHHhccCCCC-cceEEEecC--CCCCEEEEEEEecccC-CEEEEEEEecCCccccceEE
Confidence 359999999999999987 7777776533 466666643 6788889999998875 46788886 6665445678
Q ss_pred EEEEEEEecCCCCceeEEEEEEeeccc-----ceEEEEEEecccc
Q 019613 176 VEGSLKYKNGFGYGDLWDASLAYGFDR-----SAEVSAGVYLPRF 215 (338)
Q Consensus 176 ~~~~~~~~Nl~G~G~~l~~~~~~s~~~-----~~~~~~~y~~P~~ 215 (338)
+.+++...|++|.++.|.+++..+... .+.+.+.|.+|+-
T Consensus 83 ~~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G 127 (404)
T PF03865_consen 83 GGATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYG 127 (404)
T ss_dssp EEEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEET
T ss_pred EEEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeee
Confidence 999999999999999999998765431 2467899999985
No 13
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=97.87 E-value=1.2e-05 Score=84.85 Aligned_cols=119 Identities=12% Similarity=-0.000 Sum_probs=87.4
Q ss_pred cccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCcc
Q 019613 44 EEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATT 107 (338)
Q Consensus 44 ~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y 107 (338)
+..++.+..|.+.-.++||+++...... ++|++++|++|.|.|+..+.+..|++.+++++|++|
T Consensus 217 ~~l~~d~~~l~~~Y~~~Gy~~a~V~~~~~~~~~~~~~v~i~~~I~eG~~~~i~~i~~~G~~~~~~~~l~~~~~~k~G~~~ 296 (803)
T PRK11067 217 QKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELY 296 (803)
T ss_pred HHHhhhHHHHHHHHHHCCCceEEecCcEEEEcCCCceEEEEEEEeeCCcEEEEEEEEEecCCCCHHHHHHhhcCCCCcee
Confidence 3344556788888889999998875322 789999999999999988899999999999999999
Q ss_pred HHHHHHHHHHH-HHhhhcCCCcc-eeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeee
Q 019613 108 MQEIIQAANII-NYKLRELECFD-SVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIG 164 (338)
Q Consensus 108 ~~~~l~~~~~~-~~~L~~~g~F~-~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G 164 (338)
+...+.+.... .+.+.+.||+. .|...+... ...+.|+|.+.|.|.++..-..+-
T Consensus 297 ~~~~~~~~~~~i~~~~~~~GY~~a~v~~~~~~~--~~~~~v~i~~~v~eG~~y~ig~I~ 353 (803)
T PRK11067 297 NGTKVTKMEDDIKKLLGRYGYAYPRVQTQPEIN--DADKTVKLHVNVDAGNRFYVRKIR 353 (803)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCcceeeeccccC--CCCCEEEEEEEEeeCCeEEEEEEE
Confidence 99887775222 34456789964 343333322 345689999999999743333344
No 14
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=97.46 E-value=0.00013 Score=75.80 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=85.7
Q ss_pred cccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHH
Q 019613 48 DAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEI 111 (338)
Q Consensus 48 ~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~ 111 (338)
..+..+++.-.++||+|+.+.... .+|++|+|++|.|+|+......-|++.++.++|++|+.+.
T Consensus 218 ~D~e~lr~~Y~n~Gy~d~~v~s~~~~~~~~k~~~~vt~~V~EG~~y~~~~i~i~g~~~~~~~el~~~~~~~~g~~fn~~~ 297 (766)
T COG4775 218 ADLETLRSFYLNRGYADFRVSSTQVSLDPDKKGVTVTYTVKEGPQYKFGSVLIEGNLAGVSEELEKLLKVKPGKLFNRKK 297 (766)
T ss_pred ccHHHHHHHHHhCceEEEEEeeeeecccCCCccEEEEEEEccCCceEEEEEEEEcCccCcHHHHHHhhccCCCceEcHHH
Confidence 445566666668888888776665 7899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeee
Q 019613 112 IQAAN-IINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIG 164 (338)
Q Consensus 112 l~~~~-~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G 164 (338)
|.+.. .....+.+.||=- +.|.+.+.++.....+.|.+.|.+.++.+--.+.
T Consensus 298 i~~~~~~I~~~~~~~GY~~-a~V~p~~~~n~~~~tv~v~~~V~~g~~~~V~~i~ 350 (766)
T COG4775 298 IEDDADKIKERYARYGYAF-ANVSPQPDANDENKTVDVVFRVDEGDRVYVRRIR 350 (766)
T ss_pred HHHHHHHHHHHHHhcCcee-eEeeeecccCCCCcEEEEEEEEEcCCceeeeeee
Confidence 98753 3355566667632 4444443222344679999999999865433344
No 15
>PLN03138 Protein TOC75; Provisional
Probab=97.43 E-value=0.00061 Score=70.16 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=67.8
Q ss_pred CCCeEEEEEEEEC----CCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEE
Q 019613 74 PVPLRVHDVIVKG----NTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVI 149 (338)
Q Consensus 74 g~~~~~g~V~i~G----~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~ 149 (338)
-++|.|.+|.|.| .+...++.|...+..++|..|+..+|++. .++|+++|+|+.|.+.+.+. .++.|.|.
T Consensus 145 ~~~~~vs~v~~~~~~~~~~~~~e~~l~~~i~~kpG~v~trsqLq~d---v~~I~~tG~F~~V~~~v~~~---~dg~v~V~ 218 (796)
T PLN03138 145 FKRYKVSEIEFFDRRRNTTVGTEDSFFEMVTLRPGGVYTKAQLQKE---LETLASCGMFEKVDLEGKTK---PDGTLGLT 218 (796)
T ss_pred cceEEEEEEEEeccccCCCcchHHHHHHHHhcCCCCccCHHHHHHH---HHHHHhcCCceEEEEEEEeC---CCCeEEEE
Confidence 4589999999987 55667888999999999999999999998 99999999999988887642 45679999
Q ss_pred EEEEEccCc
Q 019613 150 IQVVETKTP 158 (338)
Q Consensus 150 v~v~E~~~~ 158 (338)
|.+.|.++.
T Consensus 219 ~~i~Eg~~~ 227 (796)
T PLN03138 219 ISFTESTWQ 227 (796)
T ss_pred EEEEeCCce
Confidence 999988654
No 16
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=96.84 E-value=0.002 Score=67.08 Aligned_cols=72 Identities=10% Similarity=-0.040 Sum_probs=61.0
Q ss_pred EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEcc
Q 019613 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK 156 (338)
Q Consensus 78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~ 156 (338)
-+.+|.|.|.+.-=+.++..-+..+||..++...|.+. .++++++|||++|.+.+.. .+..|.|+++|+|++
T Consensus 109 l~~e~~~~~~~~~~~~~~~~~~~~~~G~~~t~~~~~~d---~~~i~~tG~F~~V~~~~~~----~~~Gv~v~~~V~enP 180 (718)
T TIGR00992 109 LQKELEVLATCGMFEKVDYEGKTTQDGRLGTTISFAES---VWAIADRFRCINVGLMPQS----KPLEMDVDMEVKEKP 180 (718)
T ss_pred eeeeeeeecCcHHHHHHHhhccccCCCCcccHHHHHHH---HHHHHHcEEeeeeEEeecc----CCCceEEEEEEecCC
Confidence 37899999986555556666678999999999999998 9999999999999999874 456799999999976
No 17
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=96.00 E-value=0.019 Score=40.73 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=52.7
Q ss_pred EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEc
Q 019613 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVET 155 (338)
Q Consensus 78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~ 155 (338)
.+.+|.|.|+..++..-|...+....|..+..-.+.++ .++|.+..+.++|.|+-.. |++ |.|.|+|+
T Consensus 2 ~v~~I~V~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~l~~~p~V~~v~V~r~~-----P~~--l~I~V~Er 69 (69)
T PF08478_consen 2 RVKKIEVSGNSYLSKEEILQALGIQKGKNLFSLDLKKI---EQRLEKLPWVKSVSVSRRF-----PNT--LEIKVKER 69 (69)
T ss_dssp S--EEEEES-SSS-HHHHHHHHCTTSTTTCCCSHHHHH---HHCCCCTTTEEEEEEEEET-----TTE--EEEEEEE-
T ss_pred CccEEEEECCCcCCHHHHHHHhCcCCCCeEEEECHHHH---HHHHHcCCCEEEEEEEEeC-----CCE--EEEEEEeC
Confidence 47899999999999999999999888997776666666 8999999999999999873 454 56666664
No 18
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=95.33 E-value=0.0051 Score=46.04 Aligned_cols=20 Identities=10% Similarity=-0.072 Sum_probs=10.8
Q ss_pred cCccCCCccchhHHHHHHhh
Q 019613 50 AQPQRKSRVDRPKIENLFRR 69 (338)
Q Consensus 50 k~~~~~~a~~~gy~~a~~~~ 69 (338)
.-.+...+..++||.-..+-
T Consensus 40 e~p~p~fgea~~~~~~v~rY 59 (101)
T PF09026_consen 40 EVPVPEFGEAMAYFTMVKRY 59 (101)
T ss_dssp ------HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHhhcchHhhh
Confidence 67788888889998776554
No 19
>PRK05529 cell division protein FtsQ; Provisional
Probab=94.20 E-value=0.2 Score=45.54 Aligned_cols=73 Identities=23% Similarity=0.233 Sum_probs=61.2
Q ss_pred CCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEE
Q 019613 75 VPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVE 154 (338)
Q Consensus 75 ~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E 154 (338)
+-+.+.+|.|+|+..++.+-|...+....|..+..-.+..+ +++|.+..+.++|.|+-.. |++ |.|+|+|
T Consensus 59 p~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~---~~~l~~~P~V~sa~V~r~~-----P~t--l~I~V~E 128 (255)
T PRK05529 59 PLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETV---RKKLAAFPLIRSYSVESKP-----PGT--IVVRVVE 128 (255)
T ss_pred CceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHH---HHHHhcCCCEeEEEEEEeC-----CCE--EEEEEEE
Confidence 57789999999999999999999998888987655555555 8899999999999999874 444 6889999
Q ss_pred ccC
Q 019613 155 TKT 157 (338)
Q Consensus 155 ~~~ 157 (338)
+++
T Consensus 129 r~p 131 (255)
T PRK05529 129 RVP 131 (255)
T ss_pred eee
Confidence 974
No 20
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=88.45 E-value=1.3 Score=40.60 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=61.8
Q ss_pred eEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEcc
Q 019613 77 LRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK 156 (338)
Q Consensus 77 ~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~ 156 (338)
..+.+|.|+|+..++++-|.+.+.+..+..+..-.+.+. +++|.+..+-++|.|+-.- |++ |.|.|+|+.
T Consensus 60 ~~i~~v~v~Gn~~~s~~~I~~~~~l~~~~~~~~ld~~~~---~~~i~~~PwVk~a~V~r~~-----Pnt--v~I~v~Er~ 129 (269)
T COG1589 60 FPIRKVSVSGNNQVSEEDILKALGLDGGTSFLTLDLNAI---RENIEKLPWVKSAEVRRQF-----PNT--LEIEVVERE 129 (269)
T ss_pred ccceEEEEecCcccCHHHHHHHhhhccCCceEEEcHHHH---HHHHHhCCCeEEEEEEEeC-----CCc--EEEEEEEee
Confidence 468999999999999999999999998998888888887 9999999999999999753 444 688899997
Q ss_pred C
Q 019613 157 T 157 (338)
Q Consensus 157 ~ 157 (338)
+
T Consensus 130 p 130 (269)
T COG1589 130 P 130 (269)
T ss_pred e
Confidence 3
No 21
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=87.78 E-value=2.2 Score=30.80 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=44.2
Q ss_pred EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHH-HHHHHhhhcCCCc-ceeeEEEcCCCCCCCCeeEEEEEEEE
Q 019613 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA-NIINYKLRELECF-DSVEITLDSGPPELPGTSNVIIQVVE 154 (338)
Q Consensus 78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~-~~~~~~L~~~g~F-~~V~v~~~~~~~~~~~~v~V~v~v~E 154 (338)
.+..|.|+|++.+++..|.+.+.-..|.+.....|.++ ....+.+.+.||. +.|.+.+.. ...+. |.|.|.|
T Consensus 2 ~i~~i~~~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~---i~~G~--l~i~V~e 75 (76)
T PF08479_consen 2 PIKGIRFEGNTLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQD---ISDGV--LTIRVVE 75 (76)
T ss_dssp ---EEEEES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEE---ETTSE--EEEEEE-
T ss_pred CeEEEEEECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCee---cCCCE--EEEEEEc
Confidence 57899999999999999999997777888776665554 3345666788998 556664431 23444 4555544
No 22
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.22 E-value=1.1 Score=46.93 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=3.1
Q ss_pred cCHHHHH
Q 019613 90 TKDCLIE 96 (338)
Q Consensus 90 t~~~~I~ 96 (338)
..++|..
T Consensus 1467 ~D~df~~ 1473 (1516)
T KOG1832|consen 1467 IDGDFME 1473 (1516)
T ss_pred CChHHHH
Confidence 3444444
No 23
>PRK10775 cell division protein FtsQ; Provisional
Probab=73.13 E-value=14 Score=33.98 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=54.1
Q ss_pred CCCeEEEEEEEECCCc-cCHHHHHHHh-hh-hccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEE
Q 019613 74 PVPLRVHDVIVKGNTK-TKDCLIEAEL-DA-IRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVII 150 (338)
Q Consensus 74 g~~~~~g~V~i~G~~~-t~~~~I~r~l-~~-~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v 150 (338)
.+.+.+.+|.|+|+.+ +...-|+..+ +. .+|..+ .-.+..+ +++|.++.+-.+|.|+-.. |++ |.|
T Consensus 53 ~~~~pl~~V~V~G~~~~~~~~~I~~~i~~~~~~g~f~-~~Dl~~i---~~~l~~lPWV~~a~VrR~w-----Pdt--L~V 121 (276)
T PRK10775 53 AQRLPLSKLVVTGERHYTTNDDIRQAILALGAPGTFM-TQDVNII---QQQIERLPWIKQVSVRKQW-----PDE--LKI 121 (276)
T ss_pred CCCCceeEEEEeCCeeeCCHHHHHHHHhhccCCCCce-EEcHHHH---HHHHHcCCCeeEEEEEEeC-----CCc--EEE
Confidence 3466789999999876 5666676655 43 456655 3355555 9999999999999999764 343 788
Q ss_pred EEEEccC
Q 019613 151 QVVETKT 157 (338)
Q Consensus 151 ~v~E~~~ 157 (338)
.|+|+++
T Consensus 122 ~V~Er~P 128 (276)
T PRK10775 122 HLVEYVP 128 (276)
T ss_pred EEEEeec
Confidence 9999974
No 24
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=58.56 E-value=7.8 Score=29.27 Aligned_cols=7 Identities=29% Similarity=0.259 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 019613 11 EQKPEAL 17 (338)
Q Consensus 11 ~~~~~~~ 17 (338)
--||...
T Consensus 54 IGK~~se 60 (92)
T PF15243_consen 54 IGKPASE 60 (92)
T ss_pred cCCCCCc
Confidence 3444444
No 25
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=53.18 E-value=98 Score=31.52 Aligned_cols=61 Identities=8% Similarity=0.008 Sum_probs=46.1
Q ss_pred CCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHH-HHHHHhhhcCCCcceeeEEE
Q 019613 75 VPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA-NIINYKLRELECFDSVEITL 135 (338)
Q Consensus 75 ~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~-~~~~~~L~~~g~F~~V~v~~ 135 (338)
+.+.|.+|.|+|+.......|+..+....|.+.....|..+ ..+++.+.+.||--+.-+-+
T Consensus 71 ~~f~I~~i~l~g~~~~~~~~l~~~~~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp 132 (554)
T COG2831 71 PCFPINRIELEGNTLLDALELQAILAPYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLP 132 (554)
T ss_pred ceEEEEEEEEeCCcccChHHHHHhhHHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcC
Confidence 45889999999988899999999886667777665544443 34567778889988665555
No 26
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=51.66 E-value=75 Score=22.36 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=40.9
Q ss_pred CCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcC
Q 019613 74 PVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS 137 (338)
Q Consensus 74 g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~ 137 (338)
.+.+.+..+.+.|+ .+. ..|...+...+.+. .++|.++++|..|.+.-..
T Consensus 11 P~~v~l~~l~~~~~----------~l~-i~G~a~~~~~v~~f---~~~L~~~~~f~~v~l~~~~ 60 (78)
T PF05137_consen 11 PEGVWLTSLSINGN----------TLS-ISGYADSYQSVAAF---LRNLEQSPFFSDVSLSSIS 60 (78)
T ss_pred CCCEEEEEEEEeCC----------EEE-EEEEECCHHHHHHH---HHHHhhCCCccceEEEEEE
Confidence 66788999999886 222 35888899999998 9999999999999877543
No 27
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=49.97 E-value=11 Score=36.47 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCCC-CCCCCcccccc-cccccccc---ccCCCCccccccccCccCCCccchhHHHHHH
Q 019613 3 NAGGIPGPEQKPEAL-NPNLDEIEEEE-EEDDDVVE---EEDDDDLEEDDDAAQPQRKSRVDRPKIENLF 67 (338)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~ye~~k~~~~~~a~~~gy~~a~~ 67 (338)
+.+++|.++..+... .+..++++.|+ +.|++++. +++++++..||. ....+.+.++-|++..-
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~ed~eei~Sd~Een~~~g~~e~e~e~~~Et--a~ekr~RlA~e~L~~i~ 87 (479)
T KOG0299|consen 20 SGGGKPFKSEEEAERKKNRDDDEDAEEIESDEEENSLAGEEEEEDEFEEET--AGEKRLRLAEEYLDEIR 87 (479)
T ss_pred CCCCCCccccchhhccccCCchhhhhhhccccccccccchhhhcccchhcc--hhHHHHHHHHHHHHHHH
Confidence 457788887666655 22222221111 11111111 233344445554 34556677778888776
No 28
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=45.32 E-value=7 Score=41.05 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=0.0
Q ss_pred ccCccCCCccchhH
Q 019613 49 AAQPQRKSRVDRPK 62 (338)
Q Consensus 49 ~k~~~~~~a~~~gy 62 (338)
-+..|.++.+..|.
T Consensus 709 ~R~~L~nTLVNqGi 722 (787)
T PF03115_consen 709 NRVTLFNTLVNQGI 722 (787)
T ss_dssp --------------
T ss_pred hHHHHHHHHHHcCC
Confidence 34444444444443
No 29
>PHA02644 hypothetical protein; Provisional
Probab=44.89 E-value=23 Score=25.94 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=6.3
Q ss_pred CCCCCCCCCCC
Q 019613 11 EQKPEALNPNL 21 (338)
Q Consensus 11 ~~~~~~~~~~~ 21 (338)
|.||++|.+++
T Consensus 66 ekkpekpened 76 (112)
T PHA02644 66 EKKPEKPENED 76 (112)
T ss_pred ccCCCCCcccc
Confidence 45666665543
No 30
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=44.28 E-value=16 Score=33.50 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCC
Q 019613 9 GPEQKPEALNPN 20 (338)
Q Consensus 9 ~~~~~~~~~~~~ 20 (338)
-|+||++.+.+-
T Consensus 246 ~Ph~k~ive~k~ 257 (355)
T KOG3593|consen 246 RPHQKLIVEIKQ 257 (355)
T ss_pred CCCccccccccc
Confidence 799999877764
No 31
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=42.65 E-value=1.1e+02 Score=29.44 Aligned_cols=53 Identities=8% Similarity=-0.004 Sum_probs=39.4
Q ss_pred EEEEEEECCCccCHHHHHHHh---hhhccCc---cHHHHHHHHHHHHHhhhcCCCcceeeEEEc
Q 019613 79 VHDVIVKGNTKTKDCLIEAEL---DAIRNAT---TMQEIIQAANIINYKLRELECFDSVEITLD 136 (338)
Q Consensus 79 ~g~V~i~G~~~t~~~~I~r~l---~~~~G~~---y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~ 136 (338)
|=.|.|+|+....+.-|+..+ .+++|.. .+.+.|++ .-+.+.+=+.-|.+.+.
T Consensus 105 IW~IeI~Gn~~~t~~~i~~~L~e~Gi~~G~~k~~id~~~ie~-----~l~~~~~~i~WV~v~i~ 163 (382)
T TIGR02876 105 IWKIDITGVKGETPYEIRKQLKEMGIKPGVWKFSVDVYKLER-----KLLDRVPEIMWAGVRVR 163 (382)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHcCCCcCeeeCCCCHHHHHH-----HHHhhCCCcEEEEEEEE
Confidence 449999999999999988887 6788986 77777775 33444566666666654
No 32
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=42.63 E-value=17 Score=35.93 Aligned_cols=8 Identities=0% Similarity=-0.018 Sum_probs=3.6
Q ss_pred hhhccCcc
Q 019613 100 DAIRNATT 107 (338)
Q Consensus 100 ~~~~G~~y 107 (338)
.+-.||.|
T Consensus 250 e~~KGDQY 257 (641)
T KOG0772|consen 250 EFSKGDQY 257 (641)
T ss_pred eeeccchh
Confidence 33445544
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=42.07 E-value=2.9e+02 Score=29.27 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=12.8
Q ss_pred eeEEEEEEEecCCCCCCCCCceeeEEEE
Q 019613 288 SSLKYTFKFDKRNSPLRPTRGYAFVSTT 315 (338)
Q Consensus 288 ~~~~~~~~~d~rD~~~~Pt~G~~~~~~~ 315 (338)
..+++.+.|+++=.=-.|-.+.++.+.+
T Consensus 734 ~~~~~~~~~~~~~YDg~~e~~~~~~~~~ 761 (765)
T PRK10049 734 IDAGATLRWDKRPYDGDREHNLYVEFDL 761 (765)
T ss_pred eeeeeeeeecCCCCCCCcccCcEEEEEE
Confidence 3445555555543333444444444443
No 34
>PHA02644 hypothetical protein; Provisional
Probab=38.86 E-value=23 Score=25.88 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCcccccccccccccccc
Q 019613 11 EQKPEALNPNLDEIEEEEEEDDDVVEEE 38 (338)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (338)
|.||++|.++++ ---|-|+.+|+-|.+
T Consensus 77 ekkpekpenede-kkpekpenedekefe 103 (112)
T PHA02644 77 EKKPEKPENEDE-KKPEKPENEDEKEFE 103 (112)
T ss_pred ccCCCCCccccc-cCCCCCCCcchhhhc
Confidence 345555544322 222334444444443
No 35
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=35.15 E-value=59 Score=28.67 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=27.3
Q ss_pred ccCHHHHHHHh-hhhccCccHHHHHHHHHHHHHhhhcC
Q 019613 89 KTKDCLIEAEL-DAIRNATTMQEIIQAANIINYKLREL 125 (338)
Q Consensus 89 ~t~~~~I~r~l-~~~~G~~y~~~~l~~~~~~~~~L~~~ 125 (338)
.+++||+.-+- ..++--|...+.+.+. .++|..+
T Consensus 74 ~LP~WF~eDE~kH~k~~~Pvtke~v~~~---k~k~~ei 108 (215)
T PF07780_consen 74 GLPDWFVEDEKKHNKPQLPVTKEEVAEY---KEKLREI 108 (215)
T ss_pred CCchhHHHHHHhhcCCCCCCCHHHHHHH---HHHHHHH
Confidence 68999999998 5567778999999887 7776554
No 36
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.18 E-value=28 Score=38.33 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=12.2
Q ss_pred ceEEEEEEeccccCCCCCCe
Q 019613 203 SAEVSAGVYLPRFKGLVTPM 222 (338)
Q Consensus 203 ~~~~~~~y~~P~~~~~~~~~ 222 (338)
.+...+.|..|+.+..+.++
T Consensus 1914 aS~~~ierf~Pyrfssrssf 1933 (3015)
T KOG0943|consen 1914 ASSAGIERFDPYRFSSRSSF 1933 (3015)
T ss_pred ccCCCeeeeccccccchhhh
Confidence 34556777778766555443
No 37
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=33.98 E-value=25 Score=37.76 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=4.3
Q ss_pred EEEEEecccc
Q 019613 206 VSAGVYLPRF 215 (338)
Q Consensus 206 ~~~~y~~P~~ 215 (338)
+.+..-.||+
T Consensus 1011 IllgLGlPWl 1020 (1096)
T TIGR00927 1011 ITVGLPVPWL 1020 (1096)
T ss_pred eeeeccHHHH
Confidence 3344444543
No 38
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=33.91 E-value=20 Score=40.69 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.7
Q ss_pred CCCCeEEEE
Q 019613 73 GPVPLRVHD 81 (338)
Q Consensus 73 ~g~~~~~g~ 81 (338)
+++..++=+
T Consensus 271 s~~~~k~ce 279 (2849)
T PTZ00415 271 AGKKVKICE 279 (2849)
T ss_pred cCcceEEEE
Confidence 344444333
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=31.79 E-value=6.8e+02 Score=26.95 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=5.7
Q ss_pred eEEEEEEEEEE
Q 019613 255 HHDLVYNLAWR 265 (338)
Q Consensus 255 ~~~l~~~~~~~ 265 (338)
.+.++|+..|+
T Consensus 776 ~~~~~Y~h~w~ 786 (822)
T PRK14574 776 VTTAGYGQRVQ 786 (822)
T ss_pred cceeeeeeEEE
Confidence 34555555554
No 40
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.37 E-value=4.3e+02 Score=24.56 Aligned_cols=29 Identities=14% Similarity=0.033 Sum_probs=20.9
Q ss_pred ceEEEEEEeccccCCCCCCeeEEEEEEeecc
Q 019613 203 SAEVSAGVYLPRFKGLVTPMTARVFLQSQDW 233 (338)
Q Consensus 203 ~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~ 233 (338)
...+.++|.+|+- ..+.+...+.|...|-
T Consensus 168 ~~~~~~~y~~~ls--~~~~L~P~l~Y~~~dA 196 (297)
T PF11059_consen 168 YYYLKGSYRLPLS--QTSFLTPSLNYTQRDA 196 (297)
T ss_pred eEEEEEEEEEEec--CCcEEeeEEEEEEecC
Confidence 3678899999993 2356777787877663
No 41
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=31.07 E-value=33 Score=36.85 Aligned_cols=6 Identities=0% Similarity=0.290 Sum_probs=2.4
Q ss_pred HHHHHh
Q 019613 94 LIEAEL 99 (338)
Q Consensus 94 ~I~r~l 99 (338)
||...+
T Consensus 938 Fi~SIi 943 (1096)
T TIGR00927 938 FLGSIM 943 (1096)
T ss_pred HHHHHH
Confidence 444433
No 42
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=29.47 E-value=69 Score=23.43 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=37.1
Q ss_pred EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCccee
Q 019613 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSV 131 (338)
Q Consensus 78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V 131 (338)
.|.+|.|.|.. +....|...-....|.+|+.+.|.+. ...+.-..||..+
T Consensus 28 ~I~~i~i~gDf-~~~~~i~~le~~L~G~~~~~~~i~~~---l~~~~~~~~~~~~ 77 (86)
T PF10437_consen 28 IIKDIKIYGDF-FGPEDIEELEEALIGCPYDREAIKEA---LNSVDLEDYFGNI 77 (86)
T ss_dssp EEEEEEEEECB-S-CCCHHHHHHHHTTCBSSHHHHHHH---HHHCHGGGTCCTH
T ss_pred EEEEEEEECCC-CCchHHHHHHHHHHhcCCCHHHHHHH---HHHhCHhhccccC
Confidence 47799999954 44455777777788999999999987 6666555666643
No 43
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=29.16 E-value=1.7e+02 Score=28.21 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=37.1
Q ss_pred EEEEEEEECCCccCHHHHHHHh---hhhccCccHHHH-HHHHHHHHHhh-hcCCCcceeeEEEc
Q 019613 78 RVHDVIVKGNTKTKDCLIEAEL---DAIRNATTMQEI-IQAANIINYKL-RELECFDSVEITLD 136 (338)
Q Consensus 78 ~~g~V~i~G~~~t~~~~I~r~l---~~~~G~~y~~~~-l~~~~~~~~~L-~~~g~F~~V~v~~~ 136 (338)
.|=.|.|+|+....+.-|+..+ .+++|.+-..-. ..++ ++.| .+.+=++-|.|...
T Consensus 107 fIW~IeI~Gn~~~~~~~I~~~L~e~Gi~~G~~k~~id~~~~i---e~~l~~~~~~i~WV~i~~~ 167 (385)
T PF06898_consen 107 FIWSIEIEGNEPVTEEEILQFLEENGIKPGAWKFKIDSCEEI---EKKLRKQFPDISWVGIEIK 167 (385)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeecCCChHHHH---HHHHHhhCCCeEEEEEEEE
Confidence 4559999999999999999888 577888532222 3333 3333 35555666666654
No 44
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=27.96 E-value=31 Score=36.94 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=9.4
Q ss_pred cccccccccCCCCcccccccc
Q 019613 30 EDDDVVEEEDDDDLEEDDDAA 50 (338)
Q Consensus 30 ~~~~~~~~~~~~~~~~ye~~k 50 (338)
+.+..||++|||-+++|++..
T Consensus 322 d~~~~ed~eDde~~deYsDDe 342 (1233)
T KOG1824|consen 322 DAMFLEDEEDDEQDDEYSDDE 342 (1233)
T ss_pred hhhhhhccccchhcccccccc
Confidence 333333344444345666533
No 45
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=25.90 E-value=20 Score=32.84 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCccccccccc----cccccc----cCCCCccccccc
Q 019613 11 EQKPEALNPNLDEIEEEEEED----DDVVEE----EDDDDLEEDDDA 49 (338)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~ye~~ 49 (338)
-|||+.|..+.++.++.+.+. ++++|+ .||+|+|.+-+.
T Consensus 129 wqk~i~p~EE~e~~~v~Eddae~~l~ki~eE~~~~~dd~D~eNfi~l 175 (384)
T KOG0972|consen 129 WQKMIPPKEEDEDTAVDEDDAEDDLDKIVEEPMNFLDDDDDENFIEL 175 (384)
T ss_pred eecccCchhhhhhccccccchhhhHHHHhhhhhhcccCCcchhhHHh
Confidence 488998887766633333222 223333 355666666553
No 46
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=23.57 E-value=48 Score=33.98 Aligned_cols=21 Identities=43% Similarity=0.382 Sum_probs=8.1
Q ss_pred CCCCCCCCCCc-cccccccccc
Q 019613 13 KPEALNPNLDE-IEEEEEEDDD 33 (338)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~ 33 (338)
+-+++-...++ ++||++|.||
T Consensus 886 ~~e~~gs~ee~~e~EeeeE~e~ 907 (952)
T KOG1834|consen 886 DYEKGGSIEEESEEEEEEETED 907 (952)
T ss_pred hcccCCcccccccccccccccc
Confidence 33444334344 3333333333
No 47
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=22.75 E-value=51 Score=32.78 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=10.6
Q ss_pred EEEEEEECCCccCHHHHHHHhh
Q 019613 79 VHDVIVKGNTKTKDCLIEAELD 100 (338)
Q Consensus 79 ~g~V~i~G~~~t~~~~I~r~l~ 100 (338)
|.+|.-.-+-.-+..+|.=+|.
T Consensus 333 FqRVdSrpnL~SRrSllT~ml~ 354 (507)
T PF11702_consen 333 FQRVDSRPNLTSRRSLLTLMLH 354 (507)
T ss_pred ceeccCCCCcccCccHHHHHhh
Confidence 3344333333446666665443
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=22.28 E-value=4.5e+02 Score=27.81 Aligned_cols=29 Identities=3% Similarity=0.153 Sum_probs=15.9
Q ss_pred eeEEEEEEEecCCC--CCCCCCceeeEEEEe
Q 019613 288 SSLKYTFKFDKRNS--PLRPTRGYAFVSTTQ 316 (338)
Q Consensus 288 ~~~~~~~~~d~rD~--~~~Pt~G~~~~~~~e 316 (338)
..+++.++..+.++ .++|.+=+...+.+.
T Consensus 655 ~~~~~~~~~n~~~~~~YfnP~~~~~~~~~~~ 685 (765)
T PRK10049 655 FLPSLYYSQNSEHDTPYYNPIKDFDVLPALE 685 (765)
T ss_pred eceEEeeccCCCCCCCccCcchhhhhhhhhh
Confidence 34555555555444 566876666544333
No 49
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=21.68 E-value=33 Score=30.56 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=5.2
Q ss_pred eeeeeEEecC
Q 019613 160 SGQIGTYTKG 169 (338)
Q Consensus 160 ~~~~G~yst~ 169 (338)
...+| |+++
T Consensus 154 mp~iG-YgS~ 162 (232)
T PRK12766 154 TVEAG-FRTP 162 (232)
T ss_pred CCcCC-CCCC
Confidence 44566 6665
No 50
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=21.49 E-value=55 Score=32.35 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=20.4
Q ss_pred cccccccccccccccCC----CCccccccccCccCCCccchhHH
Q 019613 24 IEEEEEEDDDVVEEEDD----DDLEEDDDAAQPQRKSRVDRPKI 63 (338)
Q Consensus 24 ~~~~~~~~~~~~~~~~~----~~~~~ye~~k~~~~~~a~~~gy~ 63 (338)
.+.|.++++|++-+|+| ||-..-|++...|...--.-||+
T Consensus 427 gdde~eddddidvdeediessddgtdeeqllkdivsadcasgyl 470 (990)
T KOG1819|consen 427 GDDEAEDDDDIDVDEEDIESSDDGTDEEQLLKDIVSADCASGYL 470 (990)
T ss_pred CcccccCcccccccccccccccccchHHHHHhhhhhcccccccc
Confidence 44455555555444444 44444455555555555555664
No 51
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.03 E-value=68 Score=30.88 Aligned_cols=6 Identities=0% Similarity=-0.368 Sum_probs=2.7
Q ss_pred hcCCCc
Q 019613 123 RELECF 128 (338)
Q Consensus 123 ~~~g~F 128 (338)
.++|.-
T Consensus 346 ~stG~~ 351 (514)
T KOG3130|consen 346 NSTGSG 351 (514)
T ss_pred cccccc
Confidence 344543
Done!