Query 019613
Match_columns 338
No_of_seqs 233 out of 1228
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 99.8 3.2E-18 1.1E-22 170.5 20.9 270 42-337 90-408 (554)
2 3q6b_A Outer membrane protein 99.5 2.9E-15 9.8E-20 128.9 -1.9 110 41-154 65-189 (189)
3 2x8x_X TLR1789 protein, OMP85; 99.1 5.7E-12 2E-16 111.2 -2.5 110 42-156 108-234 (235)
4 3mc9_A ALR2269 protein; polype 99.0 1.8E-12 6.1E-17 120.1 -7.1 111 41-156 174-308 (316)
5 2qdf_A OMP85, outer membrane p 99.0 4.6E-11 1.6E-15 111.3 0.6 112 42-158 199-331 (335)
6 3efc_A OMP85, outer membrane p 98.8 3.1E-11 1.1E-15 115.3 -8.4 93 43-138 281-388 (395)
7 3efc_A OMP85, outer membrane p 98.6 3.7E-09 1.3E-13 100.8 0.2 114 43-158 199-330 (395)
8 2qdf_A OMP85, outer membrane p 98.3 8.2E-08 2.8E-12 89.1 0.8 124 41-164 109-256 (335)
9 3mc9_A ALR2269 protein; polype 98.3 1.2E-06 4.1E-11 80.8 7.3 78 72-156 57-138 (316)
10 2x8x_X TLR1789 protein, OMP85; 98.1 7.8E-06 2.7E-10 71.4 7.7 76 74-156 2-77 (235)
11 3q6b_A Outer membrane protein 98.0 3.5E-05 1.2E-09 65.5 10.0 101 62-164 17-122 (189)
12 2vh2_A FTSQ, cell division pro 91.9 0.28 9.6E-06 43.1 6.4 73 75-157 24-98 (255)
13 2vh1_A FTSQ, cell division pro 91.2 0.4 1.4E-05 41.0 6.6 69 79-157 1-72 (220)
14 2qdz_A TPSB transporter FHAC; 80.1 0.23 7.8E-06 48.6 -1.4 78 74-156 56-135 (554)
15 3cx5_F Cytochrome B-C1 complex 21.6 9.6 0.00033 30.1 -1.8 11 45-55 72-82 (146)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=99.80 E-value=3.2e-18 Score=170.54 Aligned_cols=270 Identities=12% Similarity=0.047 Sum_probs=182.6
Q ss_pred CccccccccCccCCCccchhHHHHHHhhhc------------CCCCCeEEEEEEEECCCccCHHHHHH---HhhhhccCc
Q 019613 42 DLEEDDDAAQPQRKSRVDRPKIENLFRRIR------------NGPVPLRVHDVIVKGNTKTKDCLIEA---ELDAIRNAT 106 (338)
Q Consensus 42 ~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~------------~~g~~~~~g~V~i~G~~~t~~~~I~r---~l~~~~G~~ 106 (338)
.-+.+++++..|++...++||+.+....-. ++| +|++|.|+|+.++++.+|++ ++++++|++
T Consensus 90 ~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~i~v~eG---~i~~I~i~G~~~~~~~~l~~~~~~~~~~~G~~ 166 (554)
T 2qdz_A 90 DNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWG---RIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKV 166 (554)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEEEEEECC---EEEEEEETTEECCSHHHHHHHHHHSTTCTTCB
T ss_pred CHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCCEEEEEEEeE---EEEEEEECCCCccchhhhhhhhhhccccCCCc
Confidence 345667788888888889999875542211 344 38999999999999999999 999999999
Q ss_pred cHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeeeE-E-e--cCCCcceEEEEEEEE
Q 019613 107 TMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGT-Y-T--KGEAKSSTVEGSLKY 182 (338)
Q Consensus 107 y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G~-y-s--t~~~~g~~~~~~~~~ 182 (338)
|+...|++. .++|.+++ ..|.+.+.+. ..++.++|+|.|+|+++ +.+++|+ + + ++...++++.+.+.+
T Consensus 167 ~n~~~le~~---~~~L~~~~--~~v~~~~~p~--~~~g~~~l~v~v~e~~~-~~~~~g~~~~g~g~~~tg~~~~~~~~~~ 238 (554)
T 2qdz_A 167 LNVFDIDQA---IYNINNGG--KTGNITIVPA--DEYGYSYLDLQLQRRAL-PRVSLGMDNSGPGTPENGRYKYNASVTA 238 (554)
T ss_dssp CCHHHHHHH---HHHHCSSS--EEEEEEEEEC--SSTTEEEEEEEEEECCS-CEEEEEEEECSCSSSCSSCEEEEEEEEE
T ss_pred CCHHHHHHH---HHHHhcCc--hhceEEEecC--CCCCeeEEEEEEeeCCc-EEEEEEEcCCCCCCCCccceEEEEEEEe
Confidence 999999998 99999999 7788888753 46789999999999875 4667773 2 2 222244899999999
Q ss_pred ecCCCCceeEEEEEEeec------ccceEEEEEEeccccCCCCCCeeEEEEEEeeccc--c---ccCceEEEEeeEEEec
Q 019613 183 KNGFGYGDLWDASLAYGF------DRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL--K---FSSYKEQSLGLSLGLF 251 (338)
Q Consensus 183 ~Nl~G~G~~l~~~~~~s~------~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~--~---~~~y~~~~~g~~~~l~ 251 (338)
+|++|.|+++++++..+. ...+.+.++|..|+.. +.+.+.+.+...+.. . ...|...+.+++++++
T Consensus 239 ~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 315 (554)
T 2qdz_A 239 NDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGR---TRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKAT 315 (554)
T ss_dssp ECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETT---EEEEEEEEEEEEECCCSSSSCCCCCEEEEEEEEEEEE
T ss_pred CCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEec---CeEEEEEEEeEEEEEccCCcceEEEEeeEEEEEEEEE
Confidence 999999999999999986 1268899999999973 345555555443211 0 1234445555555543
Q ss_pred ------CceeEEEEEEEEEEEecC-CCCCCcHHHHHHhCCCeeeeEEEEEEEecCCCCCCCCCceeeEEEEeeee-----
Q 019613 252 ------SIRHHDLVYNLAWRTLTD-PSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGG----- 319 (338)
Q Consensus 252 ------~~~~~~l~~~~~~~~~~~-~~~~~s~~i~~~~~~~~~~~~~~~~~~d~rD~~~~Pt~G~~~~~~~e~ag----- 319 (338)
..+.+.+++.+.+.++.. +... .+ .........+.++++|++++ |..++.+.+.+..+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~~a~ 386 (554)
T 2qdz_A 316 RLLYRDTRSQFSVYGGLKLRQNKNYLAGT---RL--DVSSKHYSDVTVGMQYSTQR----GANAYFGDLSFTRGVGVNNG 386 (554)
T ss_dssp EEEECCSSEEEEEEEEEEEEEEEEECCTT---SC--CCEEEEEEEEEEEEEEEEEC----SSEEEEEEEEEEECCCC---
T ss_pred EEEEECCCeEEEEEEEEEEEEeeeeeCCc---Cc--cccCceEEEEEEEEEEEEEe----cCeEEEEEEEEEecCCCCCC
Confidence 234456666655555432 1110 00 01223456788899999876 344444444443221
Q ss_pred -------cCCCccCceEEeeEeEEe
Q 019613 320 -------LAPDSRCLRFLRQFFCLL 337 (338)
Q Consensus 320 -------lgsd~~~~~f~k~~~~~~ 337 (338)
.+++ .+|.|..+++.
T Consensus 387 ~~~~~~~~~~~---~~f~k~~~~~~ 408 (554)
T 2qdz_A 387 KYAAYDERGPQ---GNVSRFNGSLA 408 (554)
T ss_dssp --------------CCCEEEEEEEE
T ss_pred cCcccccCCCc---ceEEEEEEEEE
Confidence 1234 34888887764
No 2
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.45 E-value=2.9e-15 Score=128.88 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=97.2
Q ss_pred CCccccccccCccCCCccchhHHHHHHhhh-c--------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccC
Q 019613 41 DDLEEDDDAAQPQRKSRVDRPKIENLFRRI-R--------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNA 105 (338)
Q Consensus 41 ~~~~~ye~~k~~~~~~a~~~gy~~a~~~~~-~--------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~ 105 (338)
=+-+.+++++..|.+...++||+.+..... . +.|++++|++|.|.|+.++++.+|++.+++++|+
T Consensus 65 ~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~~~~v~l~~~V~eG~~~~i~~I~i~Gn~~~~~~~i~r~l~~~~G~ 144 (189)
T 3q6b_A 65 YNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGA 144 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEEEEEECCCCCEEEEEEEESCSSSCHHHHHTTCCSCTTS
T ss_pred eCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCCCCEEEEEEEECCCCeEEEEEEEEECCccCCHHHHHhhccCCCCC
Confidence 345678889999999999999998766542 1 7899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEE
Q 019613 106 TTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVE 154 (338)
Q Consensus 106 ~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E 154 (338)
+|+...|.++ +++|.++|||++|.|.+.+.+ ..++.++|.|.|+|
T Consensus 145 ~~n~~~l~~~---~~~L~~lg~F~~V~i~~~~~~-~~~~~vdv~v~V~E 189 (189)
T 3q6b_A 145 WLGSDLVDQG---KERLNRLGFFETVDTDTQRVP-GSPDQVDVVYKVKE 189 (189)
T ss_dssp BCCHHHHHHH---HHHHHHHSCCSEEEEEEEEET-TEEEEEEEEEEEEC
T ss_pred ccCHHHHHHH---HHHHHhCCCceeeEEEeccCC-CCCCEEEEEEEEEC
Confidence 9999999998 999999999999999998642 35678999999986
No 3
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.07 E-value=5.7e-12 Score=111.19 Aligned_cols=110 Identities=23% Similarity=0.285 Sum_probs=94.9
Q ss_pred CccccccccCccCCCccchhHHHHHHhhhc------------CCCC--CeEEEEEEEECCC---ccCHHHHHHHhhhhcc
Q 019613 42 DLEEDDDAAQPQRKSRVDRPKIENLFRRIR------------NGPV--PLRVHDVIVKGNT---KTKDCLIEAELDAIRN 104 (338)
Q Consensus 42 ~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~------------~~g~--~~~~g~V~i~G~~---~t~~~~I~r~l~~~~G 104 (338)
+...+++++..|.+...++||+.|...... ++|+ +++|+.|.|.|+. ++++.+|++.+++++|
T Consensus 108 ~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~l~~~v~eG~~~~i~i~~i~~~G~~~~~~~~~~~i~~~~~~~~G 187 (235)
T 2x8x_X 108 NLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPG 187 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTSEEEEEEECCBEEEEEEEEBCTTSCBCCCCSCHHHHHTTCSCCTT
T ss_pred CHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCCcEEEEEEEeCceEEEEEEEecccCCcCCCccchhheeeeeecCCC
Confidence 455667788888888899999877665432 5788 7788899999988 9999999999999999
Q ss_pred CccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEcc
Q 019613 105 ATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK 156 (338)
Q Consensus 105 ~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~ 156 (338)
++|+.+.|.+. +++|.++|||++|.+.+.+. ..++.++|.|.|+|++
T Consensus 188 ~~~~~~~l~~~---~~~L~~~g~f~~v~i~~~~~--~~~~~~~l~i~v~e~~ 234 (235)
T 2x8x_X 188 VVLNQKTVQAD---LRRLFELGLFEDVQVALEPG--QNPRRVNLILNIKERN 234 (235)
T ss_dssp SBCCHHHHHHH---HHHHHHHTCEEEEEEEEEEC--SSTTSEEEEEEEEECC
T ss_pred CccCHHHHHHH---HHHHHhcCCcccceEEeccC--CCCCeeEEEEEEEeCC
Confidence 99999999998 99999999999999998853 3567899999999986
No 4
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.04 E-value=1.8e-12 Score=120.13 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=27.3
Q ss_pred CCccccccccCccCCCccchhHHHHHHhhhc------------CCC--CCeEEEEEEEE-------CC---CccCHHHHH
Q 019613 41 DDLEEDDDAAQPQRKSRVDRPKIENLFRRIR------------NGP--VPLRVHDVIVK-------GN---TKTKDCLIE 96 (338)
Q Consensus 41 ~~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~------------~~g--~~~~~g~V~i~-------G~---~~t~~~~I~ 96 (338)
=....+++++..|.+...++||+.|...... ++| .+++|+.|.|. |+ .+|++.+|+
T Consensus 174 ~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~~~~~~g~l~i~V~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~vI~ 253 (316)
T 3mc9_A 174 LNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIIT 253 (316)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEECTTSEEEEEEECCEEC-------------------------------
T ss_pred eCHHHHHHHHHHHHHHHHHCCCeeEEeeeccEECCCCEEEEEEEcCccccEEEEEEeccccccccCCcccccccCHHHHH
Confidence 3456778889999999999999988876422 778 78889988888 55 589999999
Q ss_pred HHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEcc
Q 019613 97 AELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK 156 (338)
Q Consensus 97 r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~ 156 (338)
|++++++|++|+.+.|.++ +++|+++|+|++|.|.+.+. ..++.++|.|.|+|+.
T Consensus 254 r~l~~~~G~~yn~~~l~~~---~~~L~~lg~F~~V~v~~~p~--~~~~~vdl~v~v~e~~ 308 (316)
T 3mc9_A 254 REVELKPGQVFNRNTVQKD---LQRVFGTGLFEDVNVSLDPG--TDPTKVNVVVNVVERS 308 (316)
T ss_dssp ------------------------------------------------------------
T ss_pred hhhccCCCCcCCHHHHHHH---HHHHHcCCCcceeeEEeecC--CCCCeEEEEEEEEEcc
Confidence 9999999999999999998 99999999999999999864 4678999999999985
No 5
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.00 E-value=4.6e-11 Score=111.29 Aligned_cols=112 Identities=11% Similarity=0.042 Sum_probs=94.9
Q ss_pred CccccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccC
Q 019613 42 DLEEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNA 105 (338)
Q Consensus 42 ~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~ 105 (338)
+.+.+++.+..|++...++||+++.....+ ++|++|+|++|.|.|+.++++.+|++.+++++|+
T Consensus 199 ~~~~l~~~~~~l~~~y~~~GY~~~~v~~~~~~~~~~~~~v~v~i~v~eG~~~~i~~I~i~g~~~~~~~~l~~~~~~~~G~ 278 (335)
T 2qdf_A 199 QKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGE 278 (335)
T ss_dssp CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEEEEEEEEECCCCCEEEEEEEEEECTTCHHHHHHHTCCCTTE
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEcCCEEEEcCCCCEEEEEEEEccCCcEEEEEEEEEccccCChHHHHHhcCCCCCC
Confidence 344667778888888889999988875311 7899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhh----cCCC-cceeeEEEcCCCCCCCCeeEEEEEEEEccCc
Q 019613 106 TTMQEIIQAANIINYKLR----ELEC-FDSVEITLDSGPPELPGTSNVIIQVVETKTP 158 (338)
Q Consensus 106 ~y~~~~l~~~~~~~~~L~----~~g~-F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~ 158 (338)
+|+...|.+. .++|. ++|| |..|.+.+.++ ..++.++|.|.|+|.++.
T Consensus 279 ~~~~~~l~~~---~~~l~~~~~~~Gy~f~~v~~~~~~~--~~~~~vdv~i~v~e~~~~ 331 (335)
T 2qdf_A 279 LYNGTKVTKM---EDDIKKLLGRYGYAYPRVQSMPEIN--DADKTVKLRVNVDAGNRF 331 (335)
T ss_dssp ECCHHHHHHH---HHHHHHHHHTTTBSSCEEEEEEEEE--TTTTEEEEEEEEECCCBC
T ss_pred ccCHHHHHHH---HHHHHHHHHhCCCCceEEEEeeEec--CCCCEEEEEEEEeeCCeE
Confidence 9999999997 77777 5698 99998888743 356799999999999854
No 6
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=98.81 E-value=3.1e-11 Score=115.26 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=26.0
Q ss_pred ccccccccCccCCCccchhHHHHHHhhhc---------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCcc
Q 019613 43 LEEDDDAAQPQRKSRVDRPKIENLFRRIR---------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATT 107 (338)
Q Consensus 43 ~~~ye~~k~~~~~~a~~~gy~~a~~~~~~---------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y 107 (338)
-+.+++.+..|.+...++||+.+...-.- ++|++++|++|.|.|+.+|++.+|+|++++++|++|
T Consensus 281 ~~~l~~~~~~l~~~~~~~GY~~~~v~~~~~~~~~~~~v~l~~~v~eG~~~~i~~I~i~Gn~~~~~~virr~~~~~~G~~y 360 (395)
T 3efc_A 281 GTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWL 360 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETTTTEEEEEEEEECCCCCCC----------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCCccEEEEeeEecCCCCEEEEEEEEEeCCeEEEEEEEEECCCcCChHHHhhhcccCCCccC
Confidence 34455667778888888999766543210 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCcceeeEEEcCC
Q 019613 108 MQEIIQAANIINYKLRELECFDSVEITLDSG 138 (338)
Q Consensus 108 ~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~ 138 (338)
+..+|.++ +++|.++|||++|.|.+.+.
T Consensus 361 ~~~~l~~~---~~~L~~lg~F~~V~i~~~~~ 388 (395)
T 3efc_A 361 GSDLVDQG---KERLNRLGFFETVDTDTQRV 388 (395)
T ss_dssp -------------------------------
T ss_pred CHHHHHHH---HHHHHhCCCcceeeeeccCC
Confidence 99999998 99999999999999998754
No 7
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=98.64 E-value=3.7e-09 Score=100.79 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=91.8
Q ss_pred ccccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCc
Q 019613 43 LEEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNAT 106 (338)
Q Consensus 43 ~~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~ 106 (338)
.+.+++.+..|.+...++||+++...... ++|++|+|++|.|.|+..+++..|++.+++++|++
T Consensus 199 ~~~l~~d~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~v~i~V~eG~~y~i~~I~i~Gn~~~~~~~l~~~~~l~~G~~ 278 (395)
T 3efc_A 199 KQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGEL 278 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCSEECEEEEECCCCCEEEEECCBSCCTTCHHHHHHTCCCCSSCB
T ss_pred HHHHHhHHHHHHHHHHhCCCceEEEeccEEEECCCCcEEEEEEEEecCCCEEEEEEEEECCCCCCHHHHHHHhccCCCCC
Confidence 35566778888888899999998765321 78999999999999999999999999999999999
Q ss_pred cHHHHHHHH-HHHHHhhhcCCC-cceeeEEEcCCCCCCCCeeEEEEEEEEccCc
Q 019613 107 TMQEIIQAA-NIINYKLRELEC-FDSVEITLDSGPPELPGTSNVIIQVVETKTP 158 (338)
Q Consensus 107 y~~~~l~~~-~~~~~~L~~~g~-F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~ 158 (338)
|+.+.|.+. +...+.|.+.|| |..|...+... ...+.++|.+.|.|.++.
T Consensus 279 y~~~~l~~~~~~l~~~~~~~GY~~~~v~~~~~~~--~~~~~v~l~~~v~eG~~~ 330 (395)
T 3efc_A 279 YNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEIN--DADKTVKLRVNVDAGNRF 330 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEE--TTTTEEEEEEEEECCCCC
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCccEEEEeeEec--CCCCEEEEEEEEEeCCeE
Confidence 999999875 223667888999 45676555433 346789999999999753
No 8
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=98.33 E-value=8.2e-08 Score=89.15 Aligned_cols=124 Identities=6% Similarity=-0.064 Sum_probs=88.5
Q ss_pred CCccccccccCccCCCccchhHHHHHHhhhc--------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhcc--
Q 019613 41 DDLEEDDDAAQPQRKSRVDRPKIENLFRRIR--------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRN-- 104 (338)
Q Consensus 41 ~~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~--------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G-- 104 (338)
=+...+++++..|.+...++||++|...... ++|++++|++|.|.|+..+++..|++.+.+++|
T Consensus 109 ~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~~~i~eG~~~~i~~I~~~G~~~~~~~~l~~~~~~~~g~~ 188 (335)
T 2qdf_A 109 LDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVP 188 (335)
T ss_dssp CCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEECCCBCEEEEEEEESCCSSCHHHHHGGGSCC----
T ss_pred cCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCeEEEEEEEecCCEEEEEEEEEECCccCCHHHHHHHhccCCCcc
Confidence 3566788899999999999999988665322 789999999999999999999999999988887
Q ss_pred -------CccHHHHHHHHHH-HHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeee
Q 019613 105 -------ATTMQEIIQAANI-INYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIG 164 (338)
Q Consensus 105 -------~~y~~~~l~~~~~-~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G 164 (338)
++|+.+.|.+... .++.+.+.|||......+.......++.++|.|.|.|.++..-..+.
T Consensus 189 ~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~~~v~~~~~~~~~~~~~v~v~i~v~eG~~~~i~~I~ 256 (335)
T 2qdf_A 189 WWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVE 256 (335)
T ss_dssp ----------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEEEEEEEEECCCCCEEEEEE
T ss_pred ccccccCCeeCHHHHHHHHHHHHHHHHHCCCeEEEEcCCEEEEcCCCCEEEEEEEEccCCcEEEEEEE
Confidence 8999888877422 25566778998754333221111235679999999999754333444
No 9
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=98.28 E-value=1.2e-06 Score=80.83 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=70.2
Q ss_pred CCCCCeEEEEEEEECC----CccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeE
Q 019613 72 NGPVPLRVHDVIVKGN----TKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSN 147 (338)
Q Consensus 72 ~~g~~~~~g~V~i~G~----~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~ 147 (338)
+.|+++.|.+|.|+|+ ....+..|.+.+.+++|+.|+.+.|.+. .++|.++|||+.|.+.+.. .++.+.
T Consensus 57 ~Eg~~~~I~~I~i~Gn~~~~~~~~~~~l~~~l~~k~G~~~~~~~l~~d---i~~L~~~GyF~~V~v~~~~----~~~~v~ 129 (316)
T 3mc9_A 57 TTEPRVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQED---INAIFGTGFFSNVQASPED----TPLGVR 129 (316)
T ss_dssp -CCCCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHH---HHHHHHTSCEEEEEEEEEE----ETTEEE
T ss_pred CCCCceEEEEEEEECCcccccccCHHHHHhhccCCCCCccCHHHHHHH---HHHHHHCCCceEEEEEEec----CCCeEE
Confidence 5699999999999999 8899999999999999999999999987 8999999999999988763 246789
Q ss_pred EEEEEEEcc
Q 019613 148 VIIQVVETK 156 (338)
Q Consensus 148 V~v~v~E~~ 156 (338)
|.|.|.|.+
T Consensus 130 l~~~V~egp 138 (316)
T 3mc9_A 130 VSFIVQPNP 138 (316)
T ss_dssp EEEEEEECC
T ss_pred EEEEEecCc
Confidence 999999997
No 10
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=98.06 E-value=7.8e-06 Score=71.44 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=67.7
Q ss_pred CCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEE
Q 019613 74 PVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVV 153 (338)
Q Consensus 74 g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~ 153 (338)
+++..|.+|.|+|+.......|+..++.++|+.|+.+.+.+. .++|+++|||.+|.|.... .++.+.|+|.|.
T Consensus 2 ~~~~~I~~I~i~G~~~~~~~~i~~~l~~~~g~~~~~~~~~~~---~~~L~~~Gyf~~~~v~~~~----~~~~~~l~~~v~ 74 (235)
T 2x8x_X 2 EPKVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQD---TNAIFATGFFADVNAVPRD----TPLGVRITFVVR 74 (235)
T ss_dssp CCCEEEEEEEEESCCHHHHHHHHHHCCCCTTCEECHHHHHHH---HHHHHTTSCEEEEEEEEEE----ETTEEEEEEEEE
T ss_pred CCccEEEEEEEECCCccCHHHHHHhhccCCCCccCHHHHHHH---HHHHHHCCCcEEEEEEEec----CCCcEEEEEEEE
Confidence 678899999999999999999999999999999999999997 8999999999888888753 234678999999
Q ss_pred Ecc
Q 019613 154 ETK 156 (338)
Q Consensus 154 E~~ 156 (338)
|.+
T Consensus 75 eg~ 77 (235)
T 2x8x_X 75 PYP 77 (235)
T ss_dssp ECC
T ss_pred ecc
Confidence 997
No 11
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=97.98 E-value=3.5e-05 Score=65.50 Aligned_cols=101 Identities=13% Similarity=-0.005 Sum_probs=65.2
Q ss_pred HHHHHHhhhc---CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHH-HHHHHhhhcCCCcc-eeeEEEc
Q 019613 62 KIENLFRRIR---NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA-NIINYKLRELECFD-SVEITLD 136 (338)
Q Consensus 62 y~~a~~~~~~---~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~-~~~~~~L~~~g~F~-~V~v~~~ 136 (338)
||++..-+.. ..+++|+|++|.|.|+....+..|++.+.+++|++|+...+.+. +...+.|.+.||+. .|...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~y~i~~I~i~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~ 96 (189)
T 3q6b_A 17 YFEGSHMASMTGGQQMGRYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPE 96 (189)
T ss_dssp ------------------CEEEEEEEEEECTTCHHHHHHHTCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEE
T ss_pred eeechhhhhhCCCCCCCCEEEEEEEEECCCcCCHHHHHHhhCCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEE
Confidence 5555544433 46999999999999999889999999999999999999888765 22355667789975 4555433
Q ss_pred CCCCCCCCeeEEEEEEEEccCceeeeee
Q 019613 137 SGPPELPGTSNVIIQVVETKTPLSGQIG 164 (338)
Q Consensus 137 ~~~~~~~~~v~V~v~v~E~~~~~~~~~G 164 (338)
.+ ...+.+.|.+.|.|.++.+-..+-
T Consensus 97 ~d--~~~~~v~l~~~V~eG~~~~i~~I~ 122 (189)
T 3q6b_A 97 IN--DADKTVKLRVNVDAGNRFYVRKIR 122 (189)
T ss_dssp EE--TTTTEEEEEEEEECCCCCEEEEEE
T ss_pred ec--CCCCEEEEEEEECCCCeEEEEEEE
Confidence 22 245679999999999753333444
No 12
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=91.91 E-value=0.28 Score=43.14 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=57.0
Q ss_pred CCeEEEEEEEECCC-ccCHHHHHHHh-hhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEE
Q 019613 75 VPLRVHDVIVKGNT-KTKDCLIEAEL-DAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQV 152 (338)
Q Consensus 75 ~~~~~g~V~i~G~~-~t~~~~I~r~l-~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v 152 (338)
+.+.+.+|.|+|+. .++..-|+..+ ++..|..+..-.+.++ +++|.+..+.++|.|+-.. |++ |.|.|
T Consensus 24 p~f~v~~I~V~G~~~~vs~~eI~~~~~~~~~g~~~~~vd~~~i---~~~l~~~PwV~~a~V~r~~-----P~~--L~I~V 93 (255)
T 2vh2_A 24 SRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNII---QQQIERLPWIQQASVRKQW-----PDE--LKIHL 93 (255)
T ss_dssp ---CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHHH---HHHTSCCSSEEEEEEEEET-----TTE--EEEEE
T ss_pred CCceEeEEEEECCCcccCHHHHHHHHhcccCCCccEEEcHHHH---HHHHHcCCCeeEEEEEEEC-----CCe--EEEEE
Confidence 35568899999998 47888888887 7877787666666666 8999999999999998763 444 68999
Q ss_pred EEccC
Q 019613 153 VETKT 157 (338)
Q Consensus 153 ~E~~~ 157 (338)
+|+.+
T Consensus 94 ~Er~P 98 (255)
T 2vh2_A 94 VEYVP 98 (255)
T ss_dssp EECCC
T ss_pred EEeee
Confidence 99975
No 13
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=91.25 E-value=0.4 Score=40.97 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=55.6
Q ss_pred EEEEEEECCC-ccCHHHHHHHh-hhhccCccHHHHHHHHHHHHHhhh-cCCCcceeeEEEcCCCCCCCCeeEEEEEEEEc
Q 019613 79 VHDVIVKGNT-KTKDCLIEAEL-DAIRNATTMQEIIQAANIINYKLR-ELECFDSVEITLDSGPPELPGTSNVIIQVVET 155 (338)
Q Consensus 79 ~g~V~i~G~~-~t~~~~I~r~l-~~~~G~~y~~~~l~~~~~~~~~L~-~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~ 155 (338)
+.+|.|+|+. .++..-|+..+ ++..|..+..-.+.++ +++|. +..+.++|.|+-.. |++ |.|.|+|+
T Consensus 1 v~~V~V~G~~~~~s~~~I~~~~~~~~~~~~~~~vd~~~i---~~~l~~~~P~V~~a~V~r~~-----P~~--l~I~V~Er 70 (220)
T 2vh1_A 1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNII---QTQIEQRLPWIKQVSVRKQW-----PDE--LKIHLVEY 70 (220)
T ss_dssp -CEEEEESCCSSCCHHHHHHHHHTTSCTTCGGGSCHHHH---HHHHHHHCTTEEEEEEEEET-----TTE--EEEEEEEC
T ss_pred CcEEEEeCCCccCCHHHHHHHHhhccCCCCeEEECHHHH---HHHHHhcCCCEEEEEEEEeC-----CCc--eEEEEEEe
Confidence 4589999998 58888888888 7777787776677776 89999 99999999999653 454 68999999
Q ss_pred cC
Q 019613 156 KT 157 (338)
Q Consensus 156 ~~ 157 (338)
.+
T Consensus 71 ~p 72 (220)
T 2vh1_A 71 VP 72 (220)
T ss_dssp CE
T ss_pred cc
Confidence 74
No 14
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=80.06 E-value=0.23 Score=48.56 Aligned_cols=78 Identities=12% Similarity=-0.004 Sum_probs=55.2
Q ss_pred CCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHH-HHHHHhhhcCCCcc-eeeEEEcCCCCCCCCeeEEEEE
Q 019613 74 PVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA-NIINYKLRELECFD-SVEITLDSGPPELPGTSNVIIQ 151 (338)
Q Consensus 74 g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~-~~~~~~L~~~g~F~-~V~v~~~~~~~~~~~~v~V~v~ 151 (338)
|++++|++|.|+|+..+++..|++.+..++|++++.+.|.++ +.....+.+.||+. .|.+.... ...+ .|.|.
T Consensus 56 g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~---~~~g--~l~i~ 130 (554)
T 2qdz_A 56 GHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPG---VVDG--VLKLK 130 (554)
T ss_dssp CCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEE---EETT--EEEEE
T ss_pred CceEEEEEEEEECCccCCHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEccccc---ccCC--EEEEE
Confidence 899999999999998888888888888889999988777665 22345557889964 45442221 1122 36777
Q ss_pred EEEcc
Q 019613 152 VVETK 156 (338)
Q Consensus 152 v~E~~ 156 (338)
|.|.+
T Consensus 131 v~eG~ 135 (554)
T 2qdz_A 131 VEWGR 135 (554)
T ss_dssp EECCE
T ss_pred EEeEE
Confidence 77764
No 15
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=21.62 E-value=9.6 Score=30.13 Aligned_cols=11 Identities=27% Similarity=0.284 Sum_probs=4.2
Q ss_pred ccccccCccCC
Q 019613 45 EDDDAAQPQRK 55 (338)
Q Consensus 45 ~ye~~k~~~~~ 55 (338)
+-.+-|..|+.
T Consensus 72 E~vDPk~~LrE 82 (146)
T 3cx5_F 72 EVTDQLEDLRE 82 (146)
T ss_dssp -CCCHHHHHHH
T ss_pred cccChHHHHHH
Confidence 33444444433
Done!