Query 019613
Match_columns 338
No_of_seqs 233 out of 1228
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 04:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019613.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019613hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g3pa2 b.37.1.1 (A:91-217) N- 27.3 6.3 0.00046 26.7 0.0 17 7-23 21-37 (127)
2 d1vqza1 d.224.1.3 (A:242-329) 25.9 19 0.0014 24.0 2.5 51 78-132 28-78 (88)
3 d1x2ga1 d.224.1.3 (A:247-337) 19.6 86 0.0063 20.6 5.0 37 78-115 28-64 (91)
4 d2fnaa1 a.4.5.11 (A:284-356) H 18.2 46 0.0033 21.3 3.0 36 92-130 21-56 (73)
5 d2qy9a1 a.24.13.1 (A:201-284) 14.5 32 0.0023 22.4 1.5 38 86-126 2-39 (84)
6 d2gcxa1 b.34.1.2 (A:1-75) Ferr 10.8 1.8E+02 0.013 18.1 4.5 33 119-154 23-55 (75)
7 d2saka_ d.15.5.1 (A:) Staphylo 7.6 93 0.0068 21.7 2.0 34 99-134 32-67 (121)
8 d1vmaa1 a.24.13.1 (A:1-81) Sig 6.5 70 0.0051 20.5 0.8 38 86-126 10-47 (81)
9 d1qj8a_ f.4.1.1 (A:) Outer mem 4.2 5.4E+02 0.04 17.3 6.5 8 204-211 121-128 (148)
10 d1uwda_ d.52.8.2 (A:) Hypothet 4.1 5.1E+02 0.037 16.7 4.4 41 103-146 52-92 (102)
No 1
>d1g3pa2 b.37.1.1 (A:91-217) N-terminal domains of the minor coat protein g3p {Bacteriophage M13 [TaxId: 10870]}
Probab=27.29 E-value=6.3 Score=26.67 Aligned_cols=17 Identities=53% Similarity=0.909 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCCc
Q 019613 7 IPGPEQKPEALNPNLDE 23 (338)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (338)
-||.||.|.+|||..+|
T Consensus 21 ppgteqnpanpnpslee 37 (127)
T d1g3pa2 21 PPGTEQNPANPNPSLEE 37 (127)
T ss_dssp CBSSSSBCSCSSCEEES
T ss_pred CCCcccCCCCCCCcccc
Confidence 47888888888887444
No 2
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=25.92 E-value=19 Score=23.99 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=40.2
Q ss_pred EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceee
Q 019613 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVE 132 (338)
Q Consensus 78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~ 132 (338)
+|.+|.|.|. -+...-|...-....|.+|..+.|.+. ...+.-..||..+.
T Consensus 28 ~I~~iki~GD-ff~~~~i~~le~~L~G~~y~~~~i~~~---L~~~~~~~Yf~~i~ 78 (88)
T d1vqza1 28 KIQDIKIYGD-FFGIEDVAAVEDVLRGVKYEREDVLKA---LKTIDITRYFAGIS 78 (88)
T ss_dssp EEEEEEEEES-CCCSSCTHHHHHHHTTCBSSHHHHHHH---HTTSCGGGTSTTCC
T ss_pred EEEEEEEEec-CCCchhHHHHHHHHcCCCCCHHHHHHH---HHhCCHHHHhCCCC
Confidence 4779999995 467777888888889999999999987 66666667776543
No 3
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.63 E-value=86 Score=20.58 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=31.5
Q ss_pred EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHH
Q 019613 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA 115 (338)
Q Consensus 78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~ 115 (338)
+|.++.|.|. -+.+..|...-....|.+|+.+.|.+.
T Consensus 28 ~I~~~~i~gD-fl~~~~i~~le~~L~G~~y~~~~i~~~ 64 (91)
T d1x2ga1 28 HITRAQVFTD-SLNPAPLEALAGRLQGCLYRADMLQQE 64 (91)
T ss_dssp EEEEEEEEEC-CSCCHHHHHHHHHHTTCBSSHHHHHHH
T ss_pred EEEEEEEEcC-CCCcHHHHHHHHHHcCCCcCHHHHHHH
Confidence 4779999994 577888988888788999999999886
No 4
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=18.16 E-value=46 Score=21.31 Aligned_cols=36 Identities=8% Similarity=-0.092 Sum_probs=30.8
Q ss_pred HHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcce
Q 019613 92 DCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDS 130 (338)
Q Consensus 92 ~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~ 130 (338)
=+-|++++..+.|.+.+...|..+ .++|.+.|+.+.
T Consensus 21 Ws~IK~yle~~~G~~I~d~~ls~l---L~nL~k~~~iek 56 (73)
T d2fnaa1 21 WSDVKRALELEEGIEISDSEIYNY---LTQLTKHSWIIK 56 (73)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHH---HHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCChHHHHHH---HHHHHHcCceee
Confidence 456899999999988778888887 999999999864
No 5
>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]}
Probab=14.47 E-value=32 Score=22.40 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=27.0
Q ss_pred CCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCC
Q 019613 86 GNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELE 126 (338)
Q Consensus 86 G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g 126 (338)
|..+|+..|..+...+..|...+.+.+.++ ...|..++
T Consensus 2 gL~KTr~~~~~~i~~l~~~~~id~~~leeL---Ee~LI~aD 39 (84)
T d2qy9a1 2 SLLKTKENLGSGFISLFRGKKIDDDLFEEL---EEQLLIAD 39 (84)
T ss_dssp HTTTTTTTSTTHHHHHHTTCBCSHHHHHHH---HHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHcc
Confidence 567778777777766556777888888887 66666554
No 6
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=10.78 E-value=1.8e+02 Score=18.06 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEE
Q 019613 119 NYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVE 154 (338)
Q Consensus 119 ~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E 154 (338)
+++|.++|+.....|++... .|-.=|+.|.|..
T Consensus 23 ~~RL~~mGl~pG~~V~v~~~---ap~g~P~~i~v~~ 55 (75)
T d2gcxa1 23 RQKLLSLGMLPGSSFHVVRV---APLGDPVHIETRR 55 (75)
T ss_dssp HHHHTTTTCCSSEEEEECCC---CSSCCEEEEEETT
T ss_pred HHHHHHcCCCCCCEEEEEEE---CCCCCCEEEEECC
Confidence 89999999999999999853 3333466666653
No 7
>d2saka_ d.15.5.1 (A:) Staphylokinase {Staphylococcus aureus [TaxId: 1280]}
Probab=7.63 E-value=93 Score=21.65 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=26.9
Q ss_pred hhhhccCccHHHHHHHHHHHHHhhhcCC--CcceeeEE
Q 019613 99 LDAIRNATTMQEIIQAANIINYKLRELE--CFDSVEIT 134 (338)
Q Consensus 99 l~~~~G~~y~~~~l~~~~~~~~~L~~~g--~F~~V~v~ 134 (338)
+++++|+.++.+.|.+. +|..|.++. =|+-|.+.
T Consensus 32 i~l~~G~tl~k~eil~~--Vq~~idas~~~~fkvV~~~ 67 (121)
T d2saka_ 32 FPIKPGTTLTKEKIEYY--VEWALDATAYKEFRVVELD 67 (121)
T ss_dssp EECCTTCEECHHHHHHH--HHHHHTTSTTTTCEEEEEC
T ss_pred EecCcCceecHHHHHHH--HHHHhhhhhccceEEEecC
Confidence 58899999999999887 778887764 57766654
No 8
>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=6.54 E-value=70 Score=20.52 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=25.9
Q ss_pred CCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCC
Q 019613 86 GNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELE 126 (338)
Q Consensus 86 G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g 126 (338)
|..+|+..+..+.-.+..|...+.+.++++ ...|..++
T Consensus 10 gL~KTr~~~~~~l~~lf~~~~iDe~~leeL---Ee~LI~aD 47 (81)
T d1vmaa1 10 GLQKTKETFFGRVVKLLKGKKLDDETREEL---EELLIQAD 47 (81)
T ss_dssp HHHHHHHHTHHHHHHHHTTCCCCHHHHHHH---HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHcc
Confidence 556677777766665555667888888887 66666554
No 9
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=4.22 E-value=5.4e+02 Score=17.26 Aligned_cols=8 Identities=0% Similarity=-0.135 Sum_probs=3.3
Q ss_pred eEEEEEEe
Q 019613 204 AEVSAGVY 211 (338)
Q Consensus 204 ~~~~~~y~ 211 (338)
-.+.+.|.
T Consensus 121 ~~~~~eY~ 128 (148)
T d1qj8a_ 121 VALDFSYE 128 (148)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 33444443
No 10
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=4.07 E-value=5.1e+02 Score=16.73 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=0.0
Q ss_pred ccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCee
Q 019613 103 RNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTS 146 (338)
Q Consensus 103 ~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v 146 (338)
++.|+......+. ++.|.+..-..+|.|.+...|+=.++.+
T Consensus 52 ~~Cp~~~~i~~~i---~~al~~~~gV~~v~V~i~~~p~W~~~~~ 92 (102)
T d1uwda_ 52 PMCPLAGMILSDA---EEAIKKIEGVNNVEVELTFDPPWTPERM 92 (102)
T ss_dssp SCCSSHHHHHHHH---HHHHHTSSSCCEEEEEECCSSCCCGGGS
T ss_pred CCCchHHHHHHHH---HHHHHcCCCCceEEEEEEecCCCChHHC
Done!