Query 019614
Match_columns 338
No_of_seqs 140 out of 1466
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02284 glutamine synthetase 100.0 1.2E-81 2.6E-86 609.6 35.4 336 1-336 1-354 (354)
2 PLN03036 glutamine synthetase; 100.0 2.8E-80 6.1E-85 609.0 36.9 338 1-338 61-416 (432)
3 COG0174 GlnA Glutamine synthet 100.0 2.5E-80 5.4E-85 610.3 31.8 314 14-337 11-361 (443)
4 TIGR00653 GlnA glutamine synth 100.0 9.7E-79 2.1E-83 606.9 29.5 312 16-337 10-375 (460)
5 PRK09469 glnA glutamine synthe 100.0 3.4E-78 7.4E-83 603.9 30.1 313 16-337 13-383 (469)
6 TIGR03105 gln_synth_III glutam 100.0 8E-76 1.7E-80 582.7 28.7 305 16-337 8-354 (435)
7 PF00120 Gln-synt_C: Glutamine 100.0 6.7E-62 1.5E-66 454.3 14.9 222 103-333 1-259 (259)
8 KOG0683 Glutamine synthetase [ 100.0 2.3E-43 4.9E-48 331.1 19.4 332 4-337 17-370 (380)
9 PF03951 Gln-synt_N: Glutamine 99.6 4.9E-15 1.1E-19 115.3 9.1 79 17-97 1-84 (84)
10 COG3968 Uncharacterized protei 99.5 2.1E-13 4.6E-18 132.0 15.3 201 121-334 213-500 (724)
11 TIGR02050 gshA_cyan_rel unchar 98.3 2.6E-05 5.6E-10 74.2 14.5 167 125-332 1-247 (287)
12 PRK13517 carboxylate-amine lig 98.2 1.1E-05 2.3E-10 79.6 11.7 114 123-270 10-167 (373)
13 PRK13515 carboxylate-amine lig 98.2 1.5E-05 3.4E-10 78.4 12.1 113 123-270 5-161 (371)
14 PRK13516 gamma-glutamyl:cystei 98.1 8.1E-05 1.8E-09 73.3 14.7 170 123-332 11-259 (373)
15 PRK13518 carboxylate-amine lig 97.5 0.0024 5.1E-08 62.6 13.8 137 187-332 49-260 (357)
16 PLN02611 glutamate--cysteine l 96.8 0.019 4E-07 58.4 13.1 79 120-222 64-157 (482)
17 COG2170 Uncharacterized conser 96.7 0.0057 1.2E-07 58.9 7.9 94 227-333 123-251 (369)
18 PF04107 GCS2: Glutamate-cyste 96.6 0.0054 1.2E-07 58.2 6.7 77 186-268 34-157 (288)
19 TIGR02048 gshA_cyano glutamate 96.1 0.028 6.1E-07 55.5 8.8 24 309-332 219-244 (376)
20 TIGR01436 glu_cys_lig_pln glut 96.0 0.15 3.3E-06 51.5 13.7 81 121-222 19-114 (446)
21 KOG0683 Glutamine synthetase [ 95.6 0.0032 6.9E-08 60.7 0.0 78 246-337 264-343 (380)
22 TIGR03444 gshA_related glutama 89.7 2 4.3E-05 42.6 9.1 34 188-222 63-97 (390)
23 PF12224 Amidoligase_2: Putati 79.2 18 0.0004 33.1 9.9 75 197-274 77-157 (252)
24 PF06877 RraB: Regulator of ri 59.3 20 0.00043 28.2 4.8 76 107-212 3-80 (104)
25 cd04866 LigD_Pol_like_3 LigD_P 58.5 77 0.0017 29.1 8.9 98 194-300 92-203 (223)
26 TIGR02778 ligD_pol DNA polymer 57.3 80 0.0017 29.5 8.9 97 194-300 113-223 (245)
27 cd04862 PaeLigD_Pol_like PaeLi 56.6 89 0.0019 28.8 9.0 97 194-300 97-207 (227)
28 cd04861 LigD_Pol_like LigD_Pol 56.3 88 0.0019 28.9 8.9 97 194-300 97-207 (227)
29 cd04863 MtLigD_Pol_like MtLigD 50.1 1.3E+02 0.0029 27.8 9.1 97 194-300 101-211 (231)
30 COG3364 Zn-ribbon containing p 45.4 13 0.00029 29.8 1.6 24 180-204 55-78 (112)
31 PRK02471 bifunctional glutamat 45.0 1.6E+02 0.0035 32.1 10.2 17 123-139 18-34 (752)
32 cd04865 LigD_Pol_like_2 LigD_P 41.6 2.1E+02 0.0045 26.4 9.0 97 194-300 98-208 (228)
33 cd04864 LigD_Pol_like_1 LigD_P 40.8 2.1E+02 0.0046 26.4 8.9 97 194-300 99-208 (228)
34 PRK09633 ligD ATP-dependent DN 32.5 2.5E+02 0.0055 29.8 9.1 98 194-300 431-542 (610)
35 PF11679 DUF3275: Protein of u 28.5 32 0.00069 31.3 1.4 35 89-124 167-204 (214)
36 TIGR02776 NHEJ_ligase_prk DNA 27.5 3.8E+02 0.0082 28.1 9.2 98 194-300 390-501 (552)
37 PRK05972 ligD ATP-dependent DN 26.8 3.6E+02 0.0078 29.9 9.3 98 194-300 683-793 (860)
38 PF09845 DUF2072: Zn-ribbon co 26.4 29 0.00064 29.1 0.8 21 182-203 82-102 (131)
39 PRK09632 ATP-dependent DNA lig 26.2 4E+02 0.0086 29.2 9.4 96 195-300 135-244 (764)
40 cd04888 ACT_PheB-BS C-terminal 25.9 1.3E+02 0.0029 21.4 4.3 36 171-206 13-51 (76)
41 PF14528 LAGLIDADG_3: LAGLIDAD 25.4 1.1E+02 0.0024 22.3 3.8 37 168-204 30-66 (77)
42 PF01921 tRNA-synt_1f: tRNA sy 22.5 2.9E+02 0.0063 27.3 6.9 104 88-199 24-141 (360)
43 PF04417 DUF501: Protein of un 22.2 87 0.0019 26.5 2.9 40 79-122 4-48 (139)
44 COG4456 VagC Virulence-associa 21.3 69 0.0015 24.2 1.8 28 290-318 7-34 (74)
45 COG4326 Spo0M Sporulation cont 21.2 1.2E+02 0.0027 27.6 3.7 38 169-206 154-198 (270)
No 1
>PLN02284 glutamine synthetase
Probab=100.00 E-value=1.2e-81 Score=609.59 Aligned_cols=336 Identities=90% Similarity=1.507 Sum_probs=288.3
Q ss_pred ChhhHHHHcCCCCCCCCeEEEEEEEEcCCCCceeeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCccEEEEeeeeeec
Q 019614 1 MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKD 80 (338)
Q Consensus 1 ~~~~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~R~K~v~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PD~~~~l 80 (338)
||.....++++++++...+.+.|+|+|+.+.-+|||...+....+.++....|+|||+++++...++||++++||+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fdGssi~~~~~~~sD~~l~PDt~~~~ 80 (354)
T PLN02284 1 MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (354)
T ss_pred CchhhhhHhhcccCcCCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeecCCCCCCccCCCceEEEEccEEEEC
Confidence 45666677788889988888888888766645666666665434455666789999999988888999999999999999
Q ss_pred CCCCCCeEEEEEEEEcCCCccCCCChHHHHHHHHcccccCccceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccc
Q 019614 81 PFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCG 160 (338)
Q Consensus 81 Pw~~~~~a~V~cd~~~~~G~P~~~~pR~~L~~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (338)
||.++++++|+||++++||+|++.|||++|||+++++++.|+++++|+|+|||||+.+.....|++..+.+.++++||+.
T Consensus 81 Pw~~~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~ 160 (354)
T PLN02284 81 PFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCG 160 (354)
T ss_pred CCCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccC
Confidence 99875689999999999999999999999999999999999999999999999998643222344433456677888876
Q ss_pred cCcchHHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEcCCCchhHHhhHHHHHHHHhh-----------------c
Q 019614 161 VGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILE-----------------G 223 (338)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik-----------------~ 223 (338)
.+.+..+.++++++++++|+++||+|+++|||+|||||||++.|.++|++||++++||+++| .
T Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~ 240 (354)
T PLN02284 161 VGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP 240 (354)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC
Confidence 66444567899999999999999999999999999999999999999999999999999999 3
Q ss_pred -CCCCceeeeeeecccCCCCCcHHHHHHHHHHHHHHHHHHHHccccCcccCCCCCCCCCCCCceeeecCCCcceEEeCCC
Q 019614 224 -DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD 302 (338)
Q Consensus 224 -~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl~l~h~~al~a~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp~~ 302 (338)
+++|||||+|+|||+.+.++|.+.++++++|+.|+|+++++||++||||||+|++|||.|++++||.+||+++||||..
T Consensus 241 ~~~~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~NSYkRL~p~~eap~~~~~~wg~~NRsa~iRIP~~ 320 (354)
T PLN02284 241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRD 320 (354)
T ss_pred CCCccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhcCcHhhcCCCccCcccccceeecCCCceeEEECCC
Confidence 4699999999999975433567888999999978999999999999999999999999667999999999999999976
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHHhccC
Q 019614 303 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 336 (338)
Q Consensus 303 ~~~~~~~riE~R~~da~aNPYL~lAailaAGl~g 336 (338)
.....++|||+|+||++|||||++|++|++.+.+
T Consensus 321 ~~~~~~~riE~R~pd~~aNPYLa~aaila~~~~~ 354 (354)
T PLN02284 321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (354)
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHHHHhcC
Confidence 5333345999999999999999999999998763
No 2
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=2.8e-80 Score=608.97 Aligned_cols=338 Identities=75% Similarity=1.371 Sum_probs=302.5
Q ss_pred ChhhHHHHcCCCCCCCCeEEEEEEEEcCCCCceeeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCccEEEEeeeeeec
Q 019614 1 MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKD 80 (338)
Q Consensus 1 ~~~~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~R~K~v~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PD~~~~l 80 (338)
|+.|+++++|+..+|++.+.+.|+|+|.+|+-+|||+..+...++.++.++.|+|||+++++..++++|++++||+++++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~ 140 (432)
T PLN03036 61 VNRVEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 140 (432)
T ss_pred hhhHHHHhhhcccccCCeEEEEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEEC
Confidence 46789999998889999999999999999977999999998777778888899999999988888999999999999999
Q ss_pred CCCCCCeEEEEEEEEcCCCccCCCChHHHHHHHHcccccCccceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccc
Q 019614 81 PFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCG 160 (338)
Q Consensus 81 Pw~~~~~a~V~cd~~~~~G~P~~~~pR~~L~~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (338)
||.++++++|+||+|++||+|++.|||++|++++++++..|+++++|+|+|||||+.+...+.|++..+.|.++++||++
T Consensus 141 Pw~~~~~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~ 220 (432)
T PLN03036 141 PFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCG 220 (432)
T ss_pred CcCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCC
Confidence 99775689999999999999999999999999999999999999999999999998654334466544466788888877
Q ss_pred cCcchHHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEcCCCchhHHhhHHHHHHHHhh------------------
Q 019614 161 VGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILE------------------ 222 (338)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik------------------ 222 (338)
.+.+..+.++++++++++|+.+||+|+++|+|+|||||||++.|+++|++||++++||+++|
T Consensus 221 ~~~d~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~ 300 (432)
T PLN03036 221 AGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE 300 (432)
T ss_pred chhhhhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC
Confidence 65544556899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeeecccCCCCCcHHHHHHHHHHHHHHHHHHHHccccCcccCCCCCCCCCCCCceeeecCCCcceEEeCCC
Q 019614 223 GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD 302 (338)
Q Consensus 223 ~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl~l~h~~al~a~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp~~ 302 (338)
.+++|||||+|+|+|+.+++++.+.++++++|+.++|+++++|+++||||||+|++|||.|++++||.+||+++||||..
T Consensus 301 gd~~GSGmHiH~Sl~d~r~~gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asIRIP~~ 380 (432)
T PLN03036 301 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRD 380 (432)
T ss_pred CCcCCCCceeEechhhccccchHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceEEECCC
Confidence 35799999999999985543467788899999559999999999999999999999997668999999999999999976
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHHhccCCC
Q 019614 303 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 338 (338)
Q Consensus 303 ~~~~~~~riE~R~~da~aNPYL~lAailaAGl~g~~ 338 (338)
....+++|||+|.||++|||||++|+|+...++.+|
T Consensus 381 ~~~~~~~riE~R~pda~aNPYLv~aai~~t~~~~~~ 416 (432)
T PLN03036 381 TEKKGKGYLEDRRPASNMDPYIVTSLLAETTILWEP 416 (432)
T ss_pred CCCCcccEEEEeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 533334699999999999999999999999998876
No 3
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-80 Score=610.31 Aligned_cols=314 Identities=25% Similarity=0.379 Sum_probs=269.2
Q ss_pred CCCCeEEEEEEEEcCCCCceeeeEEeCCCCCCCCCCCCc--ccccCCCC-CCCCCCCccEEEEeee--eeecCCCCCCeE
Q 019614 14 ESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK--WNYDGSST-NQAPGDDSEVILYPQT--VFKDPFRRGNNI 88 (338)
Q Consensus 14 ~~~~v~~v~~~~~D~~G~~~R~K~v~~~~~~~~~~~~~~--~~~d~~~~-g~~~~~~~D~~l~PD~--~~~lPw~~~~~a 88 (338)
++.+|++|+++|+|+.| ++|+|++|+.+..+.+...+. ..|||+++ |+...++||++++||+ ++++||.++++|
T Consensus 11 ~~~~V~~v~~~f~D~~G-~~r~k~ip~~~~~~~~~~~~~~g~~fdgss~~g~~~i~~sDm~l~Pd~~T~~~~Pw~~~~ta 89 (443)
T COG0174 11 KENGVKFVDLRFTDLNG-VLRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAGFEGIGESDMVLKPDLSTLVVDPWREGPTA 89 (443)
T ss_pred HhCCceEEEEEEECCCC-CeeeEEEecccchhHHHhhhccCcCcCCccccccCCCCCCCEEEeeccCceeeCCCCCCCcE
Confidence 66889999999999999 999999999852122222222 45899998 8877799999999995 999999997799
Q ss_pred EEEEEEEcCCCccCCCChHHHHHHHHcccccCccc-eeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCcchHH
Q 019614 89 LVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEE-PWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKAL 167 (338)
Q Consensus 89 ~V~cd~~~~~G~P~~~~pR~~L~~~l~~l~~~G~~-~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (338)
+|+||+++++|+|++.|||++|||++++++++|+. +.+|+|+|||||+.+.....+ +.+.++++||+..+.+.
T Consensus 90 ~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~~----~~~~~~~~yf~~~~~~~-- 163 (443)
T COG0174 90 RVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPDG----GRPADKGGYFDVAPLDE-- 163 (443)
T ss_pred EEEEEEECCCCCcCCCChHHHHHHHHHHHHhcCCccceeecceeEEEeecccCCccc----CccCCCCcccCcccccc--
Confidence 99999999999999999999999999999999997 599999999999975421111 25678899996544422
Q ss_pred HHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEcCCCchhHHhhHHHHHHHHhh-----------------cCCCCcee
Q 019614 168 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILE-----------------GDWNGAGA 230 (338)
Q Consensus 168 ~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik-----------------~~~~GsG~ 230 (338)
..++..+|+.+|+++||++|.+|||+|||||||++++.++|++||++++||+++| .+.+||||
T Consensus 164 ~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTFMpKP~~g~~GSGM 243 (443)
T COG0174 164 AEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFFGDNGSGM 243 (443)
T ss_pred HHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEeCCCCCCCCCCce
Confidence 4778888888899999999999999999999999999999999999999999999 78899999
Q ss_pred eeeeecccCC--C----CC---c-HHHHHHHHHHHHHHHHHHHHcccc---CcccCC-CCCCCCCCCCceeeecCCCcce
Q 019614 231 HANYSTKSMR--N----DG---G-IDVIKKAIEKLGKRHGEHIAAYGE---GNERRL-TGRHETADINTFSWGVANRGAS 296 (338)
Q Consensus 231 H~h~Sl~~~~--~----~~---g-~~~~~~fiaGl~l~h~~al~a~~~---nSYkRl-~p~~~ap~p~~~~WG~~NR~a~ 296 (338)
|+|+|||+.. | ++ | +++++|||||| |+|+++++||++ |||||| +|..||| ++++||.+|||++
T Consensus 244 H~H~Sl~~~dg~nlF~d~~~~~~lS~~~~~~igGi-lkha~~~~ai~~PtvNSYkRl~vp~e~AP--~~~~wg~~NRsa~ 320 (443)
T COG0174 244 HVHQSLWDKDGGNLFADEDGYAGLSETALHFIGGI-LKHAPALTAITAPTVNSYKRLGVPYEWAP--TYIAWGVRNRSAS 320 (443)
T ss_pred eEEEEEecCCCCccccCCCCcccHHHHHHHHHHHH-HHHHHHHHhHhCCCcchhhhcCCCcccCc--chhcccccCcceE
Confidence 9999999632 3 22 2 46899999999 999999999987 999999 5525588 8999999999999
Q ss_pred EEeCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHHhccCC
Q 019614 297 IRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 337 (338)
Q Consensus 297 iRvp~~~~~~~~~riE~R~~da~aNPYL~lAailaAGl~g~ 337 (338)
||||.+.......|||+|+||++|||||++||+|+|||+|.
T Consensus 321 iRIP~~~~~~~~~RiE~R~pd~~aNPYLa~AaiL~Agl~GI 361 (443)
T COG0174 321 VRIPASGANGKARRVEFRVPDPDANPYLAFAAILAAGLDGI 361 (443)
T ss_pred EEeCCCCCCCCcceeEeeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99998744212239999999999999999999999999984
No 4
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=9.7e-79 Score=606.94 Aligned_cols=312 Identities=21% Similarity=0.287 Sum_probs=265.0
Q ss_pred CCeEEEEEEEEcCCCCceeeeEEeCCCCCC-CCCCCCcccccCCCC-CCCCCCCccEEEEeee--eeecCCCCCCeEEEE
Q 019614 16 TEKVIAEYVWIGGSGMDLRSKARTLPAPTT-DPTKLPKWNYDGSST-NQAPGDDSEVILYPQT--VFKDPFRRGNNILVM 91 (338)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~R~K~v~~~~~~~-~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD~--~~~lPw~~~~~a~V~ 91 (338)
.+|.+|+++|+|++| ++|||.||+++|.+ .+.. +++|+++++ ++...+++|++++||+ ++++||.++++|+|+
T Consensus 10 ~~i~~v~~~~~Dl~G-~~rgk~vp~~~~~~~~~~~--G~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~~pw~~~~~a~v~ 86 (460)
T TIGR00653 10 ENVKFVDLRFTDIKG-KPQHVEIPASALDKEAFEE--GIMFDGSSIRGFQGIEESDMLLKPDPSTAVIDPWRAEKTLRVI 86 (460)
T ss_pred CCCcEEEEEEECCCC-CEeeEEEeHHHhhHHHhcC--CeecccccccccccCCCCcEEEeccCCcceeccCCCCCcEEEE
Confidence 679999999999999 99999999998753 2222 357888776 6667788999999995 999999765699999
Q ss_pred EEEEcC-CCccCCCChHHHHHHHHcccc-cCccceeEeeeeEEEEecCCCCCCC-------------------CCCCCCC
Q 019614 92 CDAYTP-AGEPIPTNKRFNAAKVFGHPD-VVAEEPWYGIEQEYTLLQKDINWPL-------------------GWPVGGY 150 (338)
Q Consensus 92 cd~~~~-~G~P~~~~pR~~L~~~l~~l~-~~G~~~~~g~E~EF~l~~~~~~~~~-------------------~~~~~g~ 150 (338)
||+++. ||+|++.|||++|||++++++ +.|+++++|+|+|||||+.+..... ++. ...
T Consensus 87 ~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 165 (460)
T TIGR00653 87 CDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWNEESGNR-GYK 165 (460)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeeccccccccccCCcC-CCc
Confidence 999998 999999999999999999999 8999999999999999986432100 110 012
Q ss_pred CCCCCCcccccCcchHHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEcCCCchhHHhhHHHHHHHHhh--------
Q 019614 151 PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILE-------- 222 (338)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik-------- 222 (338)
+.+.+.||+..... . ..+++++|++.|+++||+|+++|+|+|||||||++.|+++|++||++++||++||
T Consensus 166 ~~~~~~~~~~~~~~-~-~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~ 243 (460)
T TIGR00653 166 PRDKGGYFPVAPTD-T-AVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVVKNVARKHGK 243 (460)
T ss_pred ccCCccccCCCCcc-c-HHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444466443332 2 4688999999999999999999999999999999999999999999999999999
Q ss_pred ---------cCCCCceeeeeeecccC-CC----C---Cc-HHHHHHHHHHHHHHHHHHHHcccc---CcccCCCCCCCCC
Q 019614 223 ---------GDWNGAGAHANYSTKSM-RN----D---GG-IDVIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETA 281 (338)
Q Consensus 223 ---------~~~~GsG~H~h~Sl~~~-~~----~---~g-~~~~~~fiaGl~l~h~~al~a~~~---nSYkRl~p~~~ap 281 (338)
.+.+|||+|+|+|||+. +| + .| +.++++||||| |+|++++++|++ ||||||+|++|||
T Consensus 244 ~ATFmpKP~~~~~GSG~H~H~Sl~d~g~n~F~d~~~~~~lS~~~~~fiaGi-L~h~~~l~a~~~PtvNSYkRl~p~~~ap 322 (460)
T TIGR00653 244 TATFMPKPLFGDNGSGMHCHQSLWKDGENLFAGEEGYAGLSETALYYIGGI-LKHAKALAAFTNPTVNSYKRLVPGYEAP 322 (460)
T ss_pred EEEEecccCCCCCcCceeEEECccCCCeeccCCCCCCcccCHHHHHHHHHH-HHHHHHhhhHhcCCCcchhhcCCCCcCc
Confidence 78899999999999973 22 1 23 46899999999 999999999976 9999999999999
Q ss_pred CCCceeeecCCCcceEEeCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHHhccCC
Q 019614 282 DINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 337 (338)
Q Consensus 282 ~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYL~lAailaAGl~g~ 337 (338)
++++||.+||+++||||.... ...+|||+|++|++|||||++||+|+|||+|.
T Consensus 323 --~~~~WG~~NR~a~iRvp~~~~-~~~~riE~R~~da~aNPYLalAa~laAGl~Gi 375 (460)
T TIGR00653 323 --VYLAYSARNRSALIRIPASGN-PKAKRIEFRFPDPSANPYLAFAAMLMAGLDGI 375 (460)
T ss_pred --ceeecccCCCCceEEecCCCC-CcCceEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999996531 12349999999999999999999999999984
No 5
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=3.4e-78 Score=603.88 Aligned_cols=313 Identities=20% Similarity=0.251 Sum_probs=262.3
Q ss_pred CCeEEEEEEEEcCCCCceeeeEEeCCCCCC-CCCCCCcccccCCCC-CCCCCCCccEEEEeee--eeecCCCCCCeEEEE
Q 019614 16 TEKVIAEYVWIGGSGMDLRSKARTLPAPTT-DPTKLPKWNYDGSST-NQAPGDDSEVILYPQT--VFKDPFRRGNNILVM 91 (338)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~R~K~v~~~~~~~-~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD~--~~~lPw~~~~~a~V~ 91 (338)
.+|++|+++|+|++| ++|||.+|+++|.+ .++. ++.|+++++ ++...+++|++++||+ ++++||.+.++|+|+
T Consensus 13 ~~i~~v~~~~~Dl~G-~~rgk~ip~~~~~~~~~~~--G~~f~~~~~~g~~~~~~~D~~l~PD~~Tl~~~Pw~~~~~a~v~ 89 (469)
T PRK09469 13 HEVKFVDLRFTDTKG-KEQHVTIPAHQVNADFFEE--GKMFDGSSIGGWKGINESDMVLMPDASTAVLDPFFEDSTLIIR 89 (469)
T ss_pred CCCCEEEEEEECCCC-CEeEEEEEHHHhhHHHhcC--CceeccccccccCcCCCCCEEEEEcCCccEECCcCCCCcEEEE
Confidence 589999999999999 99999999998763 2332 357888877 7667789999999996 999999654599999
Q ss_pred EEEEcCC-CccCCCChHHHHHHHHcccccCcc--ceeEeeeeEEEEecCCCC--CCC-----------CCCC-----CC-
Q 019614 92 CDAYTPA-GEPIPTNKRFNAAKVFGHPDVVAE--EPWYGIEQEYTLLQKDIN--WPL-----------GWPV-----GG- 149 (338)
Q Consensus 92 cd~~~~~-G~P~~~~pR~~L~~~l~~l~~~G~--~~~~g~E~EF~l~~~~~~--~~~-----------~~~~-----~g- 149 (338)
||+++.+ |+|++.|||++|||++++++++|+ ++++|+|+|||||++... .+. -+.. .+
T Consensus 90 ~d~~~~~~g~p~~~~PR~iLkr~~~~l~~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (469)
T PRK09469 90 CDILEPGTMQGYDRDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEAAWNSGTKYEGGN 169 (469)
T ss_pred EEEEECCCCCcCCcCHHHHHHHHHHHHHHcCCCcceeEecceEEEEEeccccccCccccccccccchhcccccccccCCC
Confidence 9999985 899999999999999999999999 999999999999985330 000 0000 00
Q ss_pred ---CCCCCCCcccccCcchHHHHHHHHHHHHHHHHcCCceeeecCCCC-CCceEEEcCCCchhHHhhHHHHHHHHhh---
Q 019614 150 ---YPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVM-PGQWEFQVGPCVGISSGDQLWMARYILE--- 222 (338)
Q Consensus 150 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~g-pGQ~Ei~l~~~~~l~aAD~~~~~k~~ik--- 222 (338)
.+...+.||+..+. .. ..+++++|+++|+++||+|+++|||+| ||||||++.|.++|++||++++||++||
T Consensus 170 ~~~~~~~~~~~y~~~~~-~~-~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~~~~k~~vk~va 247 (469)
T PRK09469 170 KGHRPGVKGGYFPVPPV-DS-SQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVA 247 (469)
T ss_pred CCCccCCCccccCCCcc-cc-hHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 12333445643332 22 478999999999999999999999999 5999999999999999999999999999
Q ss_pred --------------cCCCCceeeeeeecccC-CC------CCc-HHHHHHHHHHHHHHHHHHHHcccc---CcccCCCCC
Q 019614 223 --------------GDWNGAGAHANYSTKSM-RN------DGG-IDVIKKAIEKLGKRHGEHIAAYGE---GNERRLTGR 277 (338)
Q Consensus 223 --------------~~~~GsG~H~h~Sl~~~-~~------~~g-~~~~~~fiaGl~l~h~~al~a~~~---nSYkRl~p~ 277 (338)
.+.+|||||+|+|||+. +| +.| +..+++||||| |+|++++++|++ ||||||+|+
T Consensus 248 ~~~g~~atFmpKP~~~~~GsG~H~H~Sl~~~g~N~F~~~~~~~ls~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~p~ 326 (469)
T PRK09469 248 HAFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIGGI-IKHAKAINALANPTTNSYKRLVPG 326 (469)
T ss_pred HHhCCEEEEeccccCCCCCceeEEEEeecCCCccccCCCCcCCcCHHHHHHHHHH-HHHHHHHHhhhcCCCchHhhcCCC
Confidence 78899999999999973 23 123 46899999999 999999999976 999999999
Q ss_pred CCCCCCCceeeecCCCcceEEeCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHHhccCC
Q 019614 278 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 337 (338)
Q Consensus 278 ~~ap~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYL~lAailaAGl~g~ 337 (338)
+||| ++++||.+||+++||||.... ...+|||+|++|++|||||++||+|+|||+|.
T Consensus 327 ~~ap--~~~~WG~~NR~a~iRvp~~~~-~~~~riE~R~~da~aNPYL~~AaiLaAGldGI 383 (469)
T PRK09469 327 YEAP--VMLAYSARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDGI 383 (469)
T ss_pred CcCc--CcceecCCCCcceEEeccCCC-CCCceEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 899999999999999995221 12349999999999999999999999999983
No 6
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=8e-76 Score=582.71 Aligned_cols=305 Identities=20% Similarity=0.225 Sum_probs=255.5
Q ss_pred CCeEEEEEEEEcCCCCceeeeEEeCCCCCCCCCCCCcccccCCCCC--CCCCCCccEEEEeee--eeecCCCCCCeEEEE
Q 019614 16 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTN--QAPGDDSEVILYPQT--VFKDPFRRGNNILVM 91 (338)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~R~K~v~~~~~~~~~~~~~~~~~d~~~~g--~~~~~~~D~~l~PD~--~~~lPw~~~~~a~V~ 91 (338)
.+|.+|+++|+|++| ++|||.+|+++|.+.+.. +..|+++++. ....+++|++++||+ ++++||.++ +++|+
T Consensus 8 ~~i~~v~~~~~D~~G-~~r~k~vp~~~~~~~~~~--G~~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~~pw~~~-~a~v~ 83 (435)
T TIGR03105 8 KGIKYFLASFVDLHG-VQKAKLVPAEAIDHMATG--GAGFAGFAAWGLGQSPADPDLMAIPDLDSLTQLPWQPG-VAWVA 83 (435)
T ss_pred CCCCEEEEEEECCCC-CeeEEEEeHHHHHHHHcC--CCcccchhhhccCCCCCCCCEEEEeccccceeCCCCCC-eEEEE
Confidence 479999999999999 999999999877553322 3456666552 224578999999995 999999885 99999
Q ss_pred EEEEcCCCccCCCChHHHHHHHHcccccCccceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCcchHHHHHH
Q 019614 92 CDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDI 171 (338)
Q Consensus 92 cd~~~~~G~P~~~~pR~~L~~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (338)
||++. +|+|++.|||++|||++++++++|+++++|+|+|||||+.+.+...... ...+....++|+.... .. ..++
T Consensus 84 ~d~~~-~G~p~~~~PR~vL~r~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~-~~~~ 159 (435)
T TIGR03105 84 ADLHV-NGKPYPQAPRVVLKRQLAEAAELGLTLNTGVECEFFLLRRDEDGSLSIA-DRADTLAKPCYDQRGL-MR-RYDV 159 (435)
T ss_pred EEEee-CCCcCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCCCCcccC-CCCCCCCccCCCCcch-hh-hhHH
Confidence 99976 8999999999999999999999999999999999999987542111110 0011112234533222 22 4789
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCCceEEEcCCCchhHHhhHHHHHHHHhh-----------------cCCCCceeeeee
Q 019614 172 VNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILE-----------------GDWNGAGAHANY 234 (338)
Q Consensus 172 ~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik-----------------~~~~GsG~H~h~ 234 (338)
+++|++.|+++||+|+++|+|+|||||||++.|.++|++||++++||++|| .+.+|||+|+|+
T Consensus 160 ~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~~~~GsG~H~H~ 239 (435)
T TIGR03105 160 LTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFADLTGNGCHFHL 239 (435)
T ss_pred HHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCCCCCccceEEEE
Confidence 999999999999999999999999999999999999999999999999999 788999999999
Q ss_pred eccc--CCC-------C--Cc-HHHHHHHHHHHHHHHHHHHHcccc---CcccCCCCC------CCCCCCCceeeecCCC
Q 019614 235 STKS--MRN-------D--GG-IDVIKKAIEKLGKRHGEHIAAYGE---GNERRLTGR------HETADINTFSWGVANR 293 (338)
Q Consensus 235 Sl~~--~~~-------~--~g-~~~~~~fiaGl~l~h~~al~a~~~---nSYkRl~p~------~~ap~p~~~~WG~~NR 293 (338)
|||+ ++| + .+ +.++++||||| |+|++++++|++ ||||||+|+ +||| ++++||.+||
T Consensus 240 Sl~d~~g~n~f~d~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~p~~~~~~~~~AP--~~~~WG~~NR 316 (435)
T TIGR03105 240 SLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGI-LHHAPALCAVLAPTVNSYKRLNAPRTTSGATWAP--NFISYGGNNR 316 (435)
T ss_pred eeecCCCcccccCCCCCccccccHHHHHHHHHH-HHHHHHHHHHHCCCCccccccCCCcCCcCcccCC--ceeeccCCCC
Confidence 9995 333 1 12 46899999999 999999999975 999999995 7899 8999999999
Q ss_pred cceEEeCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHHhccCC
Q 019614 294 GASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 337 (338)
Q Consensus 294 ~a~iRvp~~~~~~~~~riE~R~~da~aNPYL~lAailaAGl~g~ 337 (338)
+++||||. .+|||+|++|++|||||++||+|+||++|.
T Consensus 317 ~a~iRv~~------~~riE~R~~da~aNPYL~lAailaAgl~Gi 354 (435)
T TIGR03105 317 THMVRIPD------PGRFELRLADGAANPYLAQAAILAAGLDGI 354 (435)
T ss_pred ceeEeccC------CCeeEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999992 239999999999999999999999999984
No 7
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=6.7e-62 Score=454.34 Aligned_cols=222 Identities=27% Similarity=0.457 Sum_probs=182.4
Q ss_pred CCChHHHHHHHHcccccCccceeEeeeeEEEEecCCCCCCCCCCC-CCCC----CCCCCcccccCcchHHHHHHHHHHHH
Q 019614 103 PTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPV-GGYP----GPQGPYYCGVGADKALGRDIVNSHYK 177 (338)
Q Consensus 103 ~~~pR~~L~~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~-~g~~----~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (338)
+.|||++|||+++++++.|+++++|+|+|||||+++.. .+++. .+.+ ...+++|+.... +...++++++++
T Consensus 1 ~~~PR~~Lkr~~~~~~~~g~~~~~g~E~EF~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~ 76 (259)
T PF00120_consen 1 EACPRSILKRVLERLEEMGLSFKVGFELEFYLFDRDDD--GGWPRPSGYPDEPGQDYGGYYSLSPL--DAGEDFLEEIVD 76 (259)
T ss_dssp -T-HHHHHHHHHHHHHHTCCEEEEEEEEEEEEESTCEE--TTSSSTTSEESESSSTTTBSSTTTTT--STTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCceEEEEeEEEEEeccCcc--cccccccccccccccccCCcCCCchh--hHHHHHHHHHHH
Confidence 47999999999999999999999999999999998642 12220 0111 234556643332 225789999999
Q ss_pred HHHHcCCceeeecCCCCCCceEEEcCCCchhHHhhHHHHHHHHhh-----------------cCCCCceeeeeeeccc--
Q 019614 178 ACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILE-----------------GDWNGAGAHANYSTKS-- 238 (338)
Q Consensus 178 ~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik-----------------~~~~GsG~H~h~Sl~~-- 238 (338)
+|+++||+|+++|+|+|||||||++.|++++++||+++++|++|| .+.+|||+|+|+|||+
T Consensus 77 ~l~~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~~GsG~H~h~Sl~~~~ 156 (259)
T PF00120_consen 77 ALEQAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGDNGSGMHLHISLWDAK 156 (259)
T ss_dssp HHHHCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTSS--BEEEEEEECHHH
T ss_pred HHHHhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCcCccchhhhhhhhhcc
Confidence 999999999999999999999999999999999999999999999 7788999999999996
Q ss_pred -CCC----CC---c-HHHHHHHHHHHHHHHHHHHHcccc---CcccCCCCCCCCCCCCceeeecCCCcceEEeCCC-CCC
Q 019614 239 -MRN----DG---G-IDVIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINTFSWGVANRGASIRVGRD-TEK 305 (338)
Q Consensus 239 -~~~----~~---g-~~~~~~fiaGl~l~h~~al~a~~~---nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp~~-~~~ 305 (338)
++| ++ + +..+++||||| |+|++++++|++ ||||||+|++||| ++++||.+||+++||||.. .+
T Consensus 157 ~g~n~f~~~~~~~~ls~~~~~flaGl-l~h~~~l~a~~~pt~nsykRl~~~~~ap--~~~~wG~~NR~a~iRi~~~~~~- 232 (259)
T PF00120_consen 157 DGKNLFYDPDGPAGLSELARHFLAGL-LKHAPALTAFTAPTVNSYKRLVPGSWAP--TYISWGYDNRSAAIRIPSGGGP- 232 (259)
T ss_dssp TTEETTBSTTSHGHHHHHHHHHHHHH-HCHHHHHHHCHSTSTTHHHHSSSTSSSS--SBEEEEESHTTSSEEE-HHHHH-
T ss_pred ccccccccccccccccHHHHHHHHHH-HHHHHHHHhhhCccCcchhhCCCCccce--eccchhhcccchhhheeccccc-
Confidence 322 22 3 35789999999 999999999975 9999999999999 8999999999999999975 22
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHHh
Q 019614 306 EGKGYFEDRRPASNMDPYVVTSMIAETT 333 (338)
Q Consensus 306 ~~~~riE~R~~da~aNPYL~lAailaAG 333 (338)
.++|||+|+||++|||||++||+|+||
T Consensus 233 -~~~~~E~R~~da~aNPYL~laailaAG 259 (259)
T PF00120_consen 233 -KGTRIENRLPDADANPYLALAAILAAG 259 (259)
T ss_dssp -GGSEEEEESSBTTSSHHHHHHHHHHHH
T ss_pred -cccEEeccCCCCCcCHHHHHHHHHhcC
Confidence 234999999999999999999999998
No 8
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=331.13 Aligned_cols=332 Identities=64% Similarity=1.149 Sum_probs=302.4
Q ss_pred hHHHHcCCCCCCCCeEEEEEEEEcCCCCceeeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCccEEEEeeeeeecCCC
Q 019614 4 LNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFR 83 (338)
Q Consensus 4 ~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~R~K~v~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PD~~~~lPw~ 83 (338)
.++++.| +.+.+.+.+.|+|.|..|+-+|+|+..+++.++....++.|.||+++++.+.+.+||.+|+|..++..|+.
T Consensus 17 ~~~~~~L--~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgsst~QA~g~nSd~~l~Pva~~~dPfr 94 (380)
T KOG0683|consen 17 ILEYLYL--RAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSSTGQAPGENSDVYLRPVAIYPDPFR 94 (380)
T ss_pred hhhhccc--cccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCcccccccCCCCceEEeehhhcCCccc
Confidence 4566677 56679999999999999999999999999988889999999999999998888899999999999999999
Q ss_pred CCCeEEEEEEEEcCCCccCCCChHHHHHHHHcccccCccceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCc
Q 019614 84 RGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGA 163 (338)
Q Consensus 84 ~~~~a~V~cd~~~~~G~P~~~~pR~~L~~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 163 (338)
.++...|+|+.++.+|.|.+.+-|....+++..++-..-++.+|.|.|+.+++....+++|||..|+|.++++|||.++.
T Consensus 95 ~g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~~~~~~PWfg~Eqeyt~l~~~~~~p~gwp~~GFp~Pqgpyyc~VGa 174 (380)
T KOG0683|consen 95 NGNNILVMCDTYDFDGKPTETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDALDGHPFGWPKGGFPGPQGPYYCGVGA 174 (380)
T ss_pred CCCCEEEEeeccCCCCCcccccchhhHHHHhccccccccCCchhhhHHHhhhccccCCcccCCccCCCCCCCCceeeccc
Confidence 98889999999999999999999999999999998778899999999999999966678999999999999999999887
Q ss_pred chHHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEcCCCchhHHhhHHHHHHHHhh------------------cCC
Q 019614 164 DKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILE------------------GDW 225 (338)
Q Consensus 164 ~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik------------------~~~ 225 (338)
...+.++++++-+.+|...||.+..++.|+.||||||.+.|+.++.++|+++.+|++++ .++
T Consensus 175 d~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp~~g~W 254 (380)
T KOG0683|consen 175 DRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKPILGDW 254 (380)
T ss_pred cccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCCCCCcc
Confidence 77778999999999999999999999999999999999999999999999999999998 889
Q ss_pred CCceeeeeeecccCCCCCcHHHHHHHHHHHHHHHHHHHHcccc----CcccCCCCCCCCCCCCceeeecCCCcceEEeCC
Q 019614 226 NGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGE----GNERRLTGRHETADINTFSWGVANRGASIRVGR 301 (338)
Q Consensus 226 ~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl~l~h~~al~a~~~----nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp~ 301 (338)
+|+|+|.++|....+.++|.++....+..+-..|...+.+.-+ .+-+||...++....+..+||.-||.+.||||.
T Consensus 255 ngaG~Htn~ST~~mr~~~g~~~i~~a~~~ls~rh~~hi~~ydp~~G~dN~rrltg~hEt~~i~~Fs~GvAnr~~siri~r 334 (380)
T KOG0683|consen 255 NGAGCHTNFSTKEMREAGGLKIIEEAIPKLSKRHREHIAAYDPKGGKDNERRLTGRHETGSIDNFSWGVANRNPSIRIPR 334 (380)
T ss_pred cCcccccccchhHHHhccCHHHHHHHhhhcchhhhhhhhhcCccCCccchhhhcCCCccccccccccccccCCceeeech
Confidence 9999999999987666667777777888887788888888855 567888766677666899999999999999998
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHHhccCC
Q 019614 302 DTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 337 (338)
Q Consensus 302 ~~~~~~~~riE~R~~da~aNPYL~lAailaAGl~g~ 337 (338)
..+...++.+|.|-||+.+.||+|..+++-..|+..
T Consensus 335 ~va~~~~Gy~edrrP~sN~Dpy~Vt~~~~~t~l~~~ 370 (380)
T KOG0683|consen 335 TVAAEGKGYFEDRRPSSNCDPYAVTLMIIPTTLLEA 370 (380)
T ss_pred hhhcccccccccCCCcCCCCcceeeHHHhhHHHhcc
Confidence 888778889999999999999999999998877654
No 9
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.60 E-value=4.9e-15 Score=115.34 Aligned_cols=79 Identities=27% Similarity=0.414 Sum_probs=65.5
Q ss_pred CeEEEEEEEEcCCCCceeeeEEeCCCCCCCCCCCCcccccCCCC-CCCCCCCccEEEEee--eeeecCCCCCC--eEEEE
Q 019614 17 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSST-NQAPGDDSEVILYPQ--TVFKDPFRRGN--NILVM 91 (338)
Q Consensus 17 ~v~~v~~~~~D~~G~~~R~K~v~~~~~~~~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD--~~~~lPw~~~~--~a~V~ 91 (338)
+|++|+++|+|+.| .+|.+++|++++.+..... ++.|||||+ |+..+.+||++|+|| +++++||.+++ +++|+
T Consensus 1 ~V~~v~~~f~D~~G-~~~~~~i~~~~~~~~~~~~-g~~fDGSSi~g~~~~~~SDm~l~Pd~~t~~~~P~~~~~~~~~~v~ 78 (84)
T PF03951_consen 1 NVKFVDLQFTDLFG-RLKHVTIPASEFDEDALED-GIGFDGSSIRGFATIEESDMYLKPDPSTFFIDPWRPDPGKTARVI 78 (84)
T ss_dssp T-EEEEEEEE-TTS-SEEEEEEEGCCESCSGGGS--EEEECCGTTTSSBSCCEEEEEEEEGGEEEESTTTSTT-TEEEEE
T ss_pred CeEEEEEEEEcCCC-CcceEEEEHHHCCchHhhC-CCCCCcccCcCcccCCCCCEEEecCcccEEECccCCCCceEEEEE
Confidence 58999999999999 9999999998773222221 358999999 999999999999999 59999999865 99999
Q ss_pred EEEEcC
Q 019614 92 CDAYTP 97 (338)
Q Consensus 92 cd~~~~ 97 (338)
||+|++
T Consensus 79 cdv~~P 84 (84)
T PF03951_consen 79 CDVYDP 84 (84)
T ss_dssp EEEEST
T ss_pred EEeECc
Confidence 999975
No 10
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.52 E-value=2.1e-13 Score=132.02 Aligned_cols=201 Identities=25% Similarity=0.324 Sum_probs=137.6
Q ss_pred ccceeEeeeeEEEEecCCCC--CC----CCCCCCCCCCCCC-----CcccccCcchHHHHHHHHHHHHHHHHcCCceeee
Q 019614 121 AEEPWYGIEQEYTLLQKDIN--WP----LGWPVGGYPGPQG-----PYYCGVGADKALGRDIVNSHYKACLYAGINISGI 189 (338)
Q Consensus 121 G~~~~~g~E~EF~l~~~~~~--~~----~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~ 189 (338)
.....+|.|+||||+++..- ++ .|+...|.+.+.+ .||..++ +....++.++-..|-++||+++.-
T Consensus 213 ~V~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaip---eRV~~FM~Dve~~LyaLGIpaKTr 289 (724)
T COG3968 213 KVFSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIP---ERVSAFMKDVEKELYALGIPAKTR 289 (724)
T ss_pred hhccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccH---HHHHHHHHHHHHHHHHcCCccccc
Confidence 35688999999999987531 00 1222223334444 4554433 335778899999999999999999
Q ss_pred cCCCCCCceEEEcCCCchhHHhhHHHHHHHHhh-----------------cCCCCceeeeeeeccc--CCC---CC----
Q 019614 190 NGEVMPGQWEFQVGPCVGISSGDQLWMARYILE-----------------GDWNGAGAHANYSTKS--MRN---DG---- 243 (338)
Q Consensus 190 h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik-----------------~~~~GsG~H~h~Sl~~--~~~---~~---- 243 (338)
|.|++||||||...+.++--|+|+-.+..+++| .+.+|||-|.|+|+-. +.| +.
T Consensus 290 HNEVAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGiNGSGKH~NWSmGtd~g~NLLdPgD~Ph 369 (724)
T COG3968 290 HNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGINGSGKHNNWSMGTDDGLNLLDPGDMPH 369 (724)
T ss_pred ccccCCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccCcCCCCCccccccccCCCcccCCCCCCCC
Confidence 999999999999999999999999988888887 7889999999999953 222 11
Q ss_pred -cHH---HHHHHHHHHHHHHHHHHHcccc--CcccCCCCCCCCCCCCcee------------------------------
Q 019614 244 -GID---VIKKAIEKLGKRHGEHIAAYGE--GNERRLTGRHETADINTFS------------------------------ 287 (338)
Q Consensus 244 -g~~---~~~~fiaGl~l~h~~al~a~~~--nSYkRl~p~~~ap~p~~~~------------------------------ 287 (338)
... .+-..|-++ -++.+.|-+-.. .+-.||.. .+||+ .-++
T Consensus 370 dN~QFL~Fc~AvIkaV-dkY~~LlRa~~a~AsNDhRLGA-NEAPP-AI~SVflGdqLedifEqi~~G~~~ssk~~g~mdL 446 (724)
T COG3968 370 DNKQFLLFCTAVIKAV-DKYADLLRASAANASNDHRLGA-NEAPP-AIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDL 446 (724)
T ss_pred ccceeehhhHHHHHHH-HHHHHHHHHHHhccCCcccccc-CCCCc-ceeEeeccchHHHHHHHHhcCCCcccccCccccc
Confidence 111 233456666 677777766543 45678863 45653 2222
Q ss_pred -----------eecCCCcceEEeCCCCCCCCcceEEecCCCCC---CCHHHHHHHHHHHhc
Q 019614 288 -----------WGVANRGASIRVGRDTEKEGKGYFEDRRPASN---MDPYVVTSMIAETTI 334 (338)
Q Consensus 288 -----------WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~---aNPYL~lAailaAGl 334 (338)
-|-.||+.+.-.. ..+||+|.++++ +-|-.++-+++|--+
T Consensus 447 g~~vlP~v~kdAgDRNRTSPFAFT-------GNkFEFRavgSSqSvs~P~tVLN~~vAesl 500 (724)
T COG3968 447 GISVLPAVEKDAGDRNRTSPFAFT-------GNKFEFRAVGSSQSVSEPNTVLNVIVAESL 500 (724)
T ss_pred chhhccccccccccccCCCCceec-------cceeeEecCCcccccccchHHHHHHHHHHH
Confidence 2234444443333 238999999876 568888888887543
No 11
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=98.25 E-value=2.6e-05 Score=74.22 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=99.0
Q ss_pred eEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEcCC
Q 019614 125 WYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 204 (338)
Q Consensus 125 ~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~ 204 (338)
.+|+|.||+|.+.... .+ . +... .+++.++. +..+ ..+++|...+|.||+..+
T Consensus 1 t~GvE~E~~lvD~~t~----~~-----~---------~~~~---~~~l~~~~---~~~~---~~~~~El~~~qiEi~t~p 53 (287)
T TIGR02050 1 TLGVEEELLLVDPHTY----DL-----A---------ASAS---AVLIGACR---EKIG---AGFKHELFESQVELATPV 53 (287)
T ss_pred CceeeeeeeeEcCCcc----Cc-----C---------ccCh---HHHHHhhh---hhcc---cccChhhhccEEEecCCC
Confidence 3799999999997541 11 0 1101 13444431 2223 348999999999999999
Q ss_pred Cc-hhHHhhHHHHHHHHhh-------------------------------------------cCCCCceeeeeeecccCC
Q 019614 205 CV-GISSGDQLWMARYILE-------------------------------------------GDWNGAGAHANYSTKSMR 240 (338)
Q Consensus 205 ~~-~l~aAD~~~~~k~~ik-------------------------------------------~~~~GsG~H~h~Sl~~~~ 240 (338)
+. .-++.+.+..++..++ ....-+|+|+|+++-+.
T Consensus 54 ~~~~~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~~~~~~RY~~m~~~~g~~~~~~~~~g~hVhv~v~d~- 132 (287)
T TIGR02050 54 CTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQRLLERYGYVARQQLVFGLHVHVGVPSP- 132 (287)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCcHHHHHHHHHHHHHHHHhHceeeEEEEeCCCCH-
Confidence 85 5567788877777776 12235889999999542
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHccccC------------ccc-----CCCCCCCCCCCCceeee--------------
Q 019614 241 NDGGIDVIKKAIEKLGKRHGEHIAAYGEG------------NER-----RLTGRHETADINTFSWG-------------- 289 (338)
Q Consensus 241 ~~~g~~~~~~fiaGl~l~h~~al~a~~~n------------SYk-----Rl~p~~~ap~p~~~~WG-------------- 289 (338)
+.+...+-.+ ..++|.+.|++.| ||| ++ |..- ++|..-+|.
T Consensus 133 -----~~~i~~~n~l-~~~lP~llALsANSPf~~G~dtg~~s~R~~i~~~~-p~~G-~p~~f~~~~~y~~~~~~l~~~g~ 204 (287)
T TIGR02050 133 -----DDAVAVLNRL-LPWLPHLLALSASSPFWQGFDTGYASYRRNIFQAW-PTAG-LPPAFGSWDAFEAYFADLLETGV 204 (287)
T ss_pred -----HHHHHHHHHH-HHHHHHHHHHHhCCccccCcCCchHHHHHHHHHhC-CCCC-CCCcCCCHHHHHHHHHHHHHcCC
Confidence 2233344445 5666777777543 233 22 2221 223566663
Q ss_pred cCCCcce---EEeCCCCCCCCcceEEecCCCCCCCHHH--HHHHHHHH
Q 019614 290 VANRGAS---IRVGRDTEKEGKGYFEDRRPASNMDPYV--VTSMIAET 332 (338)
Q Consensus 290 ~~NR~a~---iRvp~~~~~~~~~riE~R~~da~aNPYL--~lAailaA 332 (338)
..++... ||... .-++||+|++|+..++=- ++||++.|
T Consensus 205 i~~~~~iww~vRp~~-----~~~tvE~Rv~D~~~~~~~~~~~aal~~~ 247 (287)
T TIGR02050 205 IDDDGDLWWDIRPSP-----HFGTVEVRVADTCLNLEHAVAIAALIRA 247 (287)
T ss_pred cCCCCeeEEEeccCC-----CCCCeeEEcCCCCCCHHHHHHHHHHHHH
Confidence 1233333 55332 124899999999887744 45555544
No 12
>PRK13517 carboxylate-amine ligase; Provisional
Probab=98.23 E-value=1.1e-05 Score=79.60 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=74.9
Q ss_pred ceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEc
Q 019614 123 EPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQV 202 (338)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 202 (338)
.+.+|+|.||++++... +.+ .+. ..++++.+ ... -.-..+.+|...+|.||+.
T Consensus 10 ~~tiGvE~E~~lVD~~t----~~~--------------~~~----~~~vl~~~----~~~-~~~~~i~~El~~~qiEi~t 62 (373)
T PRK13517 10 RPTLGVEWELLLVDPET----GEL--------------SPR----AAEVLAAA----GED-DEGPHLQKELLRNTVEVVT 62 (373)
T ss_pred CCeeEeeeeEeeECCCc----CCc--------------Ccc----HHHHHHhc----ccc-cCCCcccccccCCEEEECC
Confidence 46999999999999754 111 010 23344432 221 1124679999999999999
Q ss_pred CCCc-hhHHhhHHHHHHHHhh-------------------------------------------cCCCCceeeeeeeccc
Q 019614 203 GPCV-GISSGDQLWMARYILE-------------------------------------------GDWNGAGAHANYSTKS 238 (338)
Q Consensus 203 ~~~~-~l~aAD~~~~~k~~ik-------------------------------------------~~~~GsG~H~h~Sl~~ 238 (338)
.|+. .-++.+.+...+..++ ....-+|+|+|+++-+
T Consensus 63 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~ 142 (373)
T PRK13517 63 GVCDTVAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPS 142 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCC
Confidence 9986 5567787877777666 1113689999999954
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHccccCc
Q 019614 239 MRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGN 270 (338)
Q Consensus 239 ~~~~~g~~~~~~fiaGl~l~h~~al~a~~~nS 270 (338)
. +.+..+...+ ..+.|.+.|++.||
T Consensus 143 ~------~~~i~~~n~l-~~~lP~llALsAnS 167 (373)
T PRK13517 143 R------EKVVPVINRL-RPWLPHLLALSANS 167 (373)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 1 2344566667 67788888886533
No 13
>PRK13515 carboxylate-amine ligase; Provisional
Probab=98.20 E-value=1.5e-05 Score=78.37 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=72.6
Q ss_pred ceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEc
Q 019614 123 EPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQV 202 (338)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 202 (338)
.+.+|+|.||++.+... +.+ . +. ..+++... ... .-..+++|..-+|.||+.
T Consensus 5 ~~t~GvE~E~~lVD~~t----~~l-----~---------~~----~~~~l~~~----~~~--~~~~i~~El~~~qiEi~T 56 (371)
T PRK13515 5 EFTLGIEEEYLLVDPET----RDL-----R---------SY----PDALVEAC----RDT--LGEQVKPEMHQSQVEVGT 56 (371)
T ss_pred CCcceEeEeEEEecCCc----ccc-----c---------cc----HHHHHHhc----hhh--cCCccCcchhccEEEECC
Confidence 46899999999999754 111 0 10 12334331 221 123689999999999999
Q ss_pred CCCchh-HHhhHHHHHHHHhh-------------------------------------------cCCCCceeeeeeeccc
Q 019614 203 GPCVGI-SSGDQLWMARYILE-------------------------------------------GDWNGAGAHANYSTKS 238 (338)
Q Consensus 203 ~~~~~l-~aAD~~~~~k~~ik-------------------------------------------~~~~GsG~H~h~Sl~~ 238 (338)
.|+..+ ++.+.+...+..++ ....-+|+|+|+++-+
T Consensus 57 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv~~~d 136 (371)
T PRK13515 57 PVCATIAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHVGIPD 136 (371)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEeCCCC
Confidence 998655 56666666666655 1223569999999854
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHccccCc
Q 019614 239 MRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGN 270 (338)
Q Consensus 239 ~~~~~g~~~~~~fiaGl~l~h~~al~a~~~nS 270 (338)
. +.+..+...+ ...+|.+.|+++||
T Consensus 137 ~------e~~~~~~n~~-~~~lP~llALsanS 161 (371)
T PRK13515 137 R------EDRIDLMNQV-RYFLPHLLALSTSS 161 (371)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 2 2344556666 67778788876644
No 14
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=98.09 E-value=8.1e-05 Score=73.33 Aligned_cols=170 Identities=18% Similarity=0.112 Sum_probs=99.1
Q ss_pred ceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEc
Q 019614 123 EPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQV 202 (338)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 202 (338)
.+.+|+|.||+|.+.+.. . + .+. ..++++.+ ..-.. -+.+.+|...+|.|++.
T Consensus 11 ~~t~GvE~E~~LVD~~t~----~-----~---------~~~----~~~vl~~~----~~~~~-~~~v~~El~~~qIEi~T 63 (373)
T PRK13516 11 PFTLGVELELQLVNPHDY----D-----L---------TQD----SSDLLRAV----KNQPT-AGEIKPEITESMIEIAT 63 (373)
T ss_pred CCeeEEEEEEEeEcCCCc----C-----c---------Ccc----HHHHHHhc----ccccc-ccccChhhhCceEEEcC
Confidence 459999999999997641 1 1 011 23444442 21100 23579999999999999
Q ss_pred CCCchh-HHhhHHHHHHHHhh-------------------------------------------cCCCCceeeeeeeccc
Q 019614 203 GPCVGI-SSGDQLWMARYILE-------------------------------------------GDWNGAGAHANYSTKS 238 (338)
Q Consensus 203 ~~~~~l-~aAD~~~~~k~~ik-------------------------------------------~~~~GsG~H~h~Sl~~ 238 (338)
.|+..+ ++.+.+...+..++ ....-.|+|+|+.+-+
T Consensus 64 ~p~~~~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~d 143 (373)
T PRK13516 64 GVCRDIDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGCPS 143 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhhhhhhheeeeeEEEeCCCC
Confidence 999544 57777776666665 1123568899998743
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHcccc------------CcccCCC----CCCCCCCCCceeeec------------
Q 019614 239 MRNDGGIDVIKKAIEKLGKRHGEHIAAYGE------------GNERRLT----GRHETADINTFSWGV------------ 290 (338)
Q Consensus 239 ~~~~~g~~~~~~fiaGl~l~h~~al~a~~~------------nSYkRl~----p~~~ap~p~~~~WG~------------ 290 (338)
. +.+-..+-.+ ..++|.+.|+++ -|||-.. |.. .++|..-+|..
T Consensus 144 ~------~~av~~~~~l-~~~lP~llALsAsSPf~~G~dTG~~S~R~~~~~~~P~~-G~pp~~~~~~~y~~~~~~l~~~G 215 (373)
T PRK13516 144 G------DDALYLLHGL-SRYVPHFIALSASSPYVQGVDTGFASARLNSVSAFPLS-GRAPFVLNWQEFEAYFRKMSYTG 215 (373)
T ss_pred H------HHHHHHHHHH-HhHhHHHHHHHhCCccccCcCCcchhHHHHHHhcCCCC-CCCCCcCCHHHHHHHHHHHHHcC
Confidence 1 2233445555 566677777653 2444321 332 33345556651
Q ss_pred --CCC---cceEEeCCCCCCCCcceEEecCCCCCCCHHHH--HHHHHHH
Q 019614 291 --ANR---GASIRVGRDTEKEGKGYFEDRRPASNMDPYVV--TSMIAET 332 (338)
Q Consensus 291 --~NR---~a~iRvp~~~~~~~~~riE~R~~da~aNPYL~--lAailaA 332 (338)
.+. -=-||.. ..-+.||+|++|...++--+ +||++.|
T Consensus 216 ~i~d~~~~~WdvRp~-----~~~~TvEiRv~D~~~~~~~~~~iaal~~a 259 (373)
T PRK13516 216 VIDSMKDFYWDIRPK-----PEFGTVEVRVMDTPLTLERAAAIAAYIQA 259 (373)
T ss_pred CcCCCCeeEEEeccC-----CCCCCeEEecCCCCCCHHHHHHHHHHHHH
Confidence 000 0025522 12248999999999999765 4555443
No 15
>PRK13518 carboxylate-amine ligase; Provisional
Probab=97.49 E-value=0.0024 Score=62.59 Aligned_cols=137 Identities=18% Similarity=0.123 Sum_probs=80.8
Q ss_pred eeecCCCCCCceEEEcCCC-chhHHhhHHHHHHHHhh-------------------------------------------
Q 019614 187 SGINGEVMPGQWEFQVGPC-VGISSGDQLWMARYILE------------------------------------------- 222 (338)
Q Consensus 187 e~~h~E~gpGQ~Ei~l~~~-~~l~aAD~~~~~k~~ik------------------------------------------- 222 (338)
+.+++|...+|.||+..++ +.-++.+.+...|..+.
T Consensus 49 ~~~~~El~~~qvEi~T~~~~~~~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~ 128 (357)
T PRK13518 49 GRLDHELFKFVIETQTPLIEDPSEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQ 128 (357)
T ss_pred CcccccccCceEEEcCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccch
Confidence 4689999999999999998 56678888888887776
Q ss_pred cCCCCceeeeeeecccCCCCCcHHHHHHHHHHHHHHHHHHHHcccc------------CcccCCC----CCCCCCCCCce
Q 019614 223 GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGE------------GNERRLT----GRHETADINTF 286 (338)
Q Consensus 223 ~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl~l~h~~al~a~~~------------nSYkRl~----p~~~ap~p~~~ 286 (338)
....-.|+|+|+.+-+. +..-..+-.+ .-.+|.|.|+++ .|||-.. |.. .++|..-
T Consensus 129 ~~~~~~G~HVHVg~~d~------d~av~v~n~l-r~~LP~LlALsAnSPf~~G~dTG~aS~R~~iw~~~P~a-G~p~~f~ 200 (357)
T PRK13518 129 HRNTTAGLHVHVGVDDA------DKAVWIANEL-RWHLPILLALSANSPYWNGFDTGLASARAKIFEGLPNT-GMPTAFE 200 (357)
T ss_pred hcceeeEEEEEeCCCCH------HHHHHHHHHH-HhHHHHHHHHHcCCccccCcCCCcccHHHHHHHhCCCC-CCCcccC
Confidence 11235789999987331 1122234445 566688888754 2444332 321 1223555
Q ss_pred eee-cC------------CCcceEEeCCCCCCCCcceEEecCCCCCCCHHHH--HHHHHHH
Q 019614 287 SWG-VA------------NRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVV--TSMIAET 332 (338)
Q Consensus 287 ~WG-~~------------NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYL~--lAailaA 332 (338)
+|. ++ .-.-+|--.. .++..-+.+|+|++|...++--+ +|+++.|
T Consensus 201 ~~~~ye~~v~~l~~~G~i~d~~~i~wdv-Rps~~~pTvEiRv~D~~~~~~~~~~lAal~ra 260 (357)
T PRK13518 201 DFEAFQRFERRMVETGSIEDRGELWYDV-RPHTGHGTVEVRTPDAQADPDVVLAFVEYVHA 260 (357)
T ss_pred CHHHHHHHHHHHHhcCCcCCCCceEEcc-CCCCCCCceeEecCCCCCCHHHHHHHHHHHHH
Confidence 664 11 1111222100 01112248999999999998765 4554443
No 16
>PLN02611 glutamate--cysteine ligase
Probab=96.85 E-value=0.019 Score=58.40 Aligned_cols=79 Identities=16% Similarity=0.061 Sum_probs=49.6
Q ss_pred CccceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHcCCc------------e-
Q 019614 120 VAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGIN------------I- 186 (338)
Q Consensus 120 ~G~~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~------------v- 186 (338)
-+=...+|+|+|.++|+.++. .| . . |. -..++++.+. +..|++ -
T Consensus 64 ~~~~~~iG~E~E~f~~~~~~~----~p-----v---~-y~-------~i~~lL~~l~---~~~gw~~~~e~g~iIgl~~~ 120 (482)
T PLN02611 64 PKEKWRIGTEHEKFGFELATL----RP-----M---K-YD-------QIAQLLEGLA---ERFGWEKIMEGDNIIGLKQD 120 (482)
T ss_pred CCCCCeeEEeeeeeeccCCCC----CC-----C---C-HH-------HHHHHHHHHH---HhcCCceeccCCceecccCC
Confidence 344679999999999987542 11 1 1 11 1344555442 112211 0
Q ss_pred -eeecCCCCCCceEEEcCCCc-hhHHhhHHHHHHHHhh
Q 019614 187 -SGINGEVMPGQWEFQVGPCV-GISSGDQLWMARYILE 222 (338)
Q Consensus 187 -e~~h~E~gpGQ~Ei~l~~~~-~l~aAD~~~~~k~~ik 222 (338)
..+--|-| ||+|++..+.. .-++++.+...+..++
T Consensus 121 g~~ITlEPG-gQiElSt~p~~si~e~~~el~~~~~~l~ 157 (482)
T PLN02611 121 GQSVSLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVK 157 (482)
T ss_pred CCceEeccc-ceEEecccCcCCHHHHHHHHHHHHHHHH
Confidence 24556766 99999999985 5578888888877777
No 17
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.0057 Score=58.95 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=58.2
Q ss_pred CceeeeeeecccCCCCCcHHHHHHHHHHHHHHHHHHHHcccc------------CcccCCC----CCCCCCCCCceeeec
Q 019614 227 GAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGE------------GNERRLT----GRHETADINTFSWGV 290 (338)
Q Consensus 227 GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl~l~h~~al~a~~~------------nSYkRl~----p~~~ap~p~~~~WG~ 290 (338)
=-|.|+|+.+-+ .+.....+-++ +.++|.+.|+.+ -|+|+-. |.. .++|-.-+|..
T Consensus 123 v~G~HVHVGi~~------~d~~~~~l~~l-~~~~PhlLALSASSPf~~G~dTGyAS~R~~if~~~P~~-g~pp~f~sw~~ 194 (369)
T COG2170 123 VAGQHVHVGIPS------PDDAMYLLHRL-LRYVPHLLALSASSPFWQGTDTGYASARANIFSQLPTN-GLPPAFQSWAA 194 (369)
T ss_pred eeeEEEEecCCC------HHHHHHHHHHH-HhhhhHHHhhhcCCccccCccchhhhhhHhhhhhCCcC-CCCccccCHHH
Confidence 347888888844 23355778888 899999999864 2555543 211 12234556643
Q ss_pred --------------CCCc---ceEEeCCCCCCCCcceEEecCCCCCCCHHHH--HHHHHHHh
Q 019614 291 --------------ANRG---ASIRVGRDTEKEGKGYFEDRRPASNMDPYVV--TSMIAETT 333 (338)
Q Consensus 291 --------------~NR~---a~iRvp~~~~~~~~~riE~R~~da~aNPYL~--lAailaAG 333 (338)
+|.. -.||-. +. =+++|+|++|...||=-+ +++++.|-
T Consensus 195 f~~~~~~~~~tG~I~~~~~lwwdIRPs---ph--~gTlEvRi~D~~~~l~~~~aivaL~~Al 251 (369)
T COG2170 195 FEAFFRDQLETGTIDSMGDLWWDIRPS---PH--LGTLEVRICDTVLNLAELLAIVALIHAL 251 (369)
T ss_pred HHHHHHHHHHhcccccccceEEecccC---CC--CCceEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2222 234422 11 248999999999999654 66666654
No 18
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=96.57 E-value=0.0054 Score=58.24 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=50.8
Q ss_pred eeeecCCCCCCceEEEcCCCchh-HHhhHHHHHHHHhh----------------------------------------c-
Q 019614 186 ISGINGEVMPGQWEFQVGPCVGI-SSGDQLWMARYILE----------------------------------------G- 223 (338)
Q Consensus 186 ve~~h~E~gpGQ~Ei~l~~~~~l-~aAD~~~~~k~~ik----------------------------------------~- 223 (338)
-..+++|...+|.||+..|+..+ ++.+.+...+..+. .
T Consensus 34 ~~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~ 113 (288)
T PF04107_consen 34 GGRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRR 113 (288)
T ss_dssp SSEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH
T ss_pred CCceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhh
Confidence 45789999999999999998654 67777777766665 1
Q ss_pred -----CCCCceeeeeeecccCCCCCcHHHHHHHHHHHHHHHHHHHHcccc
Q 019614 224 -----DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGE 268 (338)
Q Consensus 224 -----~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl~l~h~~al~a~~~ 268 (338)
...-+|+|+|+++-+. .+..-..+..+ ...+|.+.|++.
T Consensus 114 g~~~~~~~~~g~hvhV~v~~~-----~e~~v~~~n~~-~~~~P~llALsA 157 (288)
T PF04107_consen 114 GVLARRMMTCGAHVHVGVDDG-----DEAAVRVMNAL-RPWLPVLLALSA 157 (288)
T ss_dssp -SGCCSHHBHEEEEEEEESSS-----HHHHHHHHHHH-HTTHHHHHHHH-
T ss_pred hhhhhhhhhcccceEEeCCCc-----cHHHHHHHHHH-HHHhHHHHHHHc
Confidence 1135699999999542 22223455555 677777777753
No 19
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=96.07 E-value=0.028 Score=55.54 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=17.3
Q ss_pred ceEEecCCCCCCCHHHH--HHHHHHH
Q 019614 309 GYFEDRRPASNMDPYVV--TSMIAET 332 (338)
Q Consensus 309 ~riE~R~~da~aNPYL~--lAailaA 332 (338)
+.||+|++|...+|=-. +|+++.|
T Consensus 219 ~TlEiRV~D~~~~~~~~~aiaalv~a 244 (376)
T TIGR02048 219 NRLELRICDLVTDPISLLAITALLEA 244 (376)
T ss_pred CCEEEEeccCcCCHHHHHHHHHHHHH
Confidence 37999999998888653 4554443
No 20
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=96.00 E-value=0.15 Score=51.52 Aligned_cols=81 Identities=21% Similarity=0.129 Sum_probs=50.5
Q ss_pred ccceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHcCCc--------------e
Q 019614 121 AEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGIN--------------I 186 (338)
Q Consensus 121 G~~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~--------------v 186 (338)
+=...+|+|+|-|+|+.++.. | . +|+ . + .-..++++.+. ...|++ =
T Consensus 19 ~~~~~iG~E~E~f~~~~~~~~----~-----~---~y~-~-~---~gi~~~l~~l~---~~~g~~~~~e~g~~i~l~~~~ 78 (446)
T TIGR01436 19 KEQWRIGTEHEKFGFEKNTLR----P-----M---KYE-Q-K---GGIAELLNGIA---ERFGWQKVMEGDKIIGLKQDK 78 (446)
T ss_pred CCCCceEeeeeeeeeecCCCC----C-----C---CCC-C-c---hhHHHHHHHHH---hhcCCceeccCCceeeecCCC
Confidence 446799999999999876521 1 1 121 1 1 11344555541 123321 0
Q ss_pred eeecCCCCCCceEEEcCCCc-hhHHhhHHHHHHHHhh
Q 019614 187 SGINGEVMPGQWEFQVGPCV-GISSGDQLWMARYILE 222 (338)
Q Consensus 187 e~~h~E~gpGQ~Ei~l~~~~-~l~aAD~~~~~k~~ik 222 (338)
..+.-|-| ||+|++..|.. .-++++.+...+..++
T Consensus 79 ~~itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~ 114 (446)
T TIGR01436 79 QSISLEPG-GQFELSGAPLETIHETCDEINSHLYQVK 114 (446)
T ss_pred CeEEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHH
Confidence 34555666 99999999985 5578888888887777
No 21
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=95.61 E-value=0.0032 Score=60.74 Aligned_cols=78 Identities=9% Similarity=-0.146 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcccc--CcccCCCCCCCCCCCCceeeecCCCcceEEeCCCCCCCCcceEEecCCCCCCCHH
Q 019614 246 DVIKKAIEKLGKRHGEHIAAYGE--GNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 323 (338)
Q Consensus 246 ~~~~~fiaGl~l~h~~al~a~~~--nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPY 323 (338)
++..-+.+|. + +.++...+ ++|+|..+..+.| +||.+|+....+ +. ....+.+|-..-+++|||
T Consensus 264 ST~~mr~~~g-~---~~i~~a~~~ls~rh~~hi~~ydp-----~~G~dN~rrltg-~h----Et~~i~~Fs~GvAnr~~s 329 (380)
T KOG0683|consen 264 STKEMREAGG-L---KIIEEAIPKLSKRHREHIAAYDP-----KGGKDNERRLTG-RH----ETGSIDNFSWGVANRNPS 329 (380)
T ss_pred chhHHHhccC-H---HHHHHHhhhcchhhhhhhhhcCc-----cCCccchhhhcC-CC----ccccccccccccccCCce
Confidence 4556666655 2 23333344 8999999888777 899999998888 31 122377788888889999
Q ss_pred HHHHHHHHHhccCC
Q 019614 324 VVTSMIAETTILWK 337 (338)
Q Consensus 324 L~lAailaAGl~g~ 337 (338)
+.++.+.||+.+|.
T Consensus 330 iri~r~va~~~~Gy 343 (380)
T KOG0683|consen 330 IRIPRTVAAEGKGY 343 (380)
T ss_pred eeechhhhcccccc
Confidence 99999999999985
No 22
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=89.72 E-value=2 Score=42.64 Aligned_cols=34 Identities=24% Similarity=0.110 Sum_probs=24.5
Q ss_pred eecCCCCCCceEEEcCCCc-hhHHhhHHHHHHHHhh
Q 019614 188 GINGEVMPGQWEFQVGPCV-GISSGDQLWMARYILE 222 (338)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~~-~l~aAD~~~~~k~~ik 222 (338)
.+.-|= -||+|++..|.. .-++++.+...+..++
T Consensus 63 ~iTlEP-GgQvELSt~P~~sl~el~~el~~~l~~l~ 97 (390)
T TIGR03444 63 RITVEP-GGQLELSGPPADGLTAAVAALAADLAVLR 97 (390)
T ss_pred eEEeCC-CCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 344452 479999999985 4467787777777776
No 23
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=79.16 E-value=18 Score=33.06 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=42.3
Q ss_pred ceEEEcCCCchhHHhhHHHHHHHHhh-----cCCCCceeeeeeecccCCCCCcHHHHHHHHHHHHHHHHHHHHcccc-Cc
Q 019614 197 QWEFQVGPCVGISSGDQLWMARYILE-----GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGE-GN 270 (338)
Q Consensus 197 Q~Ei~l~~~~~l~aAD~~~~~k~~ik-----~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl~l~h~~al~a~~~-nS 270 (338)
-+||.-.+...-+..+.+-.+-.+++ .-..+.|+|+|++..... -.....+..+.-+ +.+=+.|..+.+ +.
T Consensus 77 ~~ElvSP~l~~~~~~~~i~~~~~~lr~~~~~~~~~scg~HVHv~~~~~~--~~~~~l~~l~~~~-~~~E~~l~~~~~~~~ 153 (252)
T PF12224_consen 77 PVELVSPPLPYDEELEEIDKVLEALRRNGAIGTNDSCGFHVHVGPEPPS--FSLETLKRLAKAF-WLFEPWLRRLLPPDR 153 (252)
T ss_pred eEEEECCCcCchhhHHHHHHHHHHHHHcCCccccCCeeEEEEECCCCCC--ccHHHHHHHHHHH-HHHHHHHHHHcCCch
Confidence 47888776543222333333334444 224569999999985421 0134556666666 667777777776 44
Q ss_pred ccCC
Q 019614 271 ERRL 274 (338)
Q Consensus 271 YkRl 274 (338)
.+|.
T Consensus 154 ~Rr~ 157 (252)
T PF12224_consen 154 RRRN 157 (252)
T ss_pred hhcc
Confidence 4443
No 24
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=59.29 E-value=20 Score=28.24 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=44.0
Q ss_pred HHHHHHHHcccccCccceeEeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHcCCce
Q 019614 107 RFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINI 186 (338)
Q Consensus 107 R~~L~~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v 186 (338)
...-+++++.|++.|-.+..-.++||+++-.+. .. +..+.. .+.+.|..|
T Consensus 3 ~~~n~~vl~~L~~~Gddl~~~r~ieh~~~f~~~-------------------------~~-~~~f~~----~~~~~g~~v 52 (104)
T PF06877_consen 3 IIENREVLEALEEDGDDLSKPRPIEHWFYFEDE-------------------------ED-AEKFAE----ELEKLGYEV 52 (104)
T ss_dssp HHHHHHHHHHHHHHT--TTS-EEEEEEEEES-H-------------------------HH-HHHHHH----HHHHHS---
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEEEeCCH-------------------------HH-HHHHHH----HHHHCCCEE
Confidence 344567888888899999999999998875432 11 233344 469999999
Q ss_pred eeecC--CCCCCceEEEcCCCchhHHhh
Q 019614 187 SGING--EVMPGQWEFQVGPCVGISSGD 212 (338)
Q Consensus 187 e~~h~--E~gpGQ~Ei~l~~~~~l~aAD 212 (338)
+.... |.+.+.|.+.+.....+...+
T Consensus 53 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 80 (104)
T PF06877_consen 53 ESAEEDEEDGDGPYCLDISREMVLDYED 80 (104)
T ss_dssp B----B-SS-SSBEEEEEEEEE-S-HHH
T ss_pred EEeecccCCCCceEEEEEEEecCCCHHH
Confidence 98776 678888999988877665443
No 25
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=58.54 E-value=77 Score=29.13 Aligned_cols=98 Identities=10% Similarity=0.034 Sum_probs=61.2
Q ss_pred CCCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeecc-cCCCCCcHHHHHHHHHHHHHHHHH
Q 019614 194 MPGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTK-SMRNDGGIDVIKKAIEKLGKRHGE 261 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~-~~~~~~g~~~~~~fiaGl~l~h~~ 261 (338)
-|.+.-|+|.|.+++ +.++-+..+|+++. .-..|.|+|+.+-|. ... ..+..+.|.-.| ..++.
T Consensus 92 ~PD~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~lgL~~f~KTSG~kGlHV~vPl~~~~~---~~~~~r~fa~~i-A~~l~ 167 (223)
T cd04866 92 KPSEIVFDLDPPSRDHFSLAVEAANLLKEILDALGLTSFVKTSGNKGLQVYIPLPDNKF---TYDETRLFTEFI-AEYLC 167 (223)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCC---CHHHHHHHHHHH-HHHHH
Confidence 499999999999774 45566677787777 334589999999996 322 134455565555 23322
Q ss_pred HHHc--cccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 262 HIAA--YGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 262 al~a--~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
.-.. ++.+--|....+- .++.|..|+|...+=-|
T Consensus 168 ~~~P~~~t~~~~k~~R~gk-----VfiDylqN~~g~T~vap 203 (223)
T cd04866 168 QQFPELFTTERLKKNRHNR-----LYLDYVQHAEGKTIIAP 203 (223)
T ss_pred HHCchhhhHHhhHHhCCCC-----EEEECccCCCCCeEEec
Confidence 2211 1222233333333 79999999998876655
No 26
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=57.30 E-value=80 Score=29.46 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=59.3
Q ss_pred CCCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeecccCCCCCcHHHHHHHHHHH---HHHH
Q 019614 194 MPGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKL---GKRH 259 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl---~l~h 259 (338)
-|-+.-|+|.|.++. +.+.-+..+|+++. .-..|.|+|+.+-|.... ..+..+.|...| +.+.
T Consensus 113 ~PD~lvfDLDP~~~~~f~~v~~~A~~~r~~L~~lgL~~f~KTSG~kGlHV~vPl~~~~---~~~~~r~fa~~iA~~l~~~ 189 (245)
T TIGR02778 113 KPDRIVFDLDPGPGVAWKLVVEAAQLIRELLDELGLESFVKTSGGKGLHVYVPLRPTL---SWDEVKDFAKALAQALAQQ 189 (245)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEECCCCC---CHHHHHHHHHHHHHHHHHH
Confidence 489999999999864 34455566777776 334589999999996532 123345555554 2222
Q ss_pred HHHHHccccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 260 GEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 260 ~~al~a~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
.|.+... +-.|.-+.+- .++.|..|+|...+=-|
T Consensus 190 ~Pd~~t~--~~~k~~R~gk-----vfiDylqN~~g~T~vap 223 (245)
T TIGR02778 190 MPDRFTA--EMSKKNRVGK-----IFVDYLRNARGKTTVAP 223 (245)
T ss_pred Cchhhhh--HhhHHhCCCC-----EEEECccCCCCCeEEec
Confidence 2322222 2233333333 78999999988776555
No 27
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=56.65 E-value=89 Score=28.81 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeecccCCCCCcHHHHHHHHHHH---HHHH
Q 019614 194 MPGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKL---GKRH 259 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl---~l~h 259 (338)
-|.+.-|+|.|.+++ +.++-+..+|+++. .-..|.|+|+.+-|....+ .+..+.|...| +.+.
T Consensus 97 ~PD~lvfDLDP~~~~~f~~v~~~A~~~r~~L~~lgL~~~~KTSG~kGlHV~vPl~~~~~---~~~~r~fa~~lA~~l~~~ 173 (227)
T cd04862 97 RPDRIVFDLDPGPGVPWKAVVEAALLVRELLDELGLESFVKTSGGKGLHVVVPLAPRAG---WDEVKAFAKALAQHLART 173 (227)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCC---HHHHHHHHHHHHHHHHHH
Confidence 489999999999864 45566677787777 3345899999999965321 23344444444 1222
Q ss_pred HHHHHccccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 260 GEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 260 ~~al~a~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
.|.+... +--|....+- .++.|..|+|...+=-|
T Consensus 174 ~P~~~t~--~~~k~~R~gk-----vfiDylqN~~g~T~vap 207 (227)
T cd04862 174 NPDRFVA--TMGKAKRVGK-----IFIDYLRNGRGATAVAP 207 (227)
T ss_pred CchhhhH--HhhHHhCCCc-----EEEECccCCCCCeEEec
Confidence 2332222 2233333333 79999999998776555
No 28
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=56.26 E-value=88 Score=28.86 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=59.8
Q ss_pred CCCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeecccCCCCCcHHHHHHHHHHH---HHHH
Q 019614 194 MPGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKL---GKRH 259 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl---~l~h 259 (338)
-|-+.-|+|.|.+++ +.++-+..+|+++. .-..|.|+|+.+-|....+ .+..+.|...| +.+.
T Consensus 97 ~PD~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~lgL~~f~KTSG~kGlHV~vPl~~~~~---~~~~r~fa~~iA~~l~~~ 173 (227)
T cd04861 97 RPDRLVFDLDPGPGVPFEDVVEAALLLRELLDELGLESFPKTSGGKGLHVYVPLAPRYT---WDEVRAFAKALARELARR 173 (227)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCC---HHHHHHHHHHHHHHHHHH
Confidence 389999999999774 45666677788777 3345899999999965321 23334444444 2223
Q ss_pred HHHHHccccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 260 GEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 260 ~~al~a~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
.|.+..... .|.-..+- .++.|..|+|...+=-|
T Consensus 174 ~P~~~t~~~--~k~~R~gr-----vfiDy~qN~~g~T~vap 207 (227)
T cd04861 174 LPDLFTAEM--AKAKRGGK-----IFVDYLQNARGKTTVAP 207 (227)
T ss_pred CchhhhhHh--hHHhCCCC-----EEEECccCCCCCeEEec
Confidence 333333222 22222232 78999998888776555
No 29
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=50.08 E-value=1.3e+02 Score=27.76 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=59.4
Q ss_pred CCCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeecccCCCCCcHHHHHHHHHHH---HHHH
Q 019614 194 MPGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKL---GKRH 259 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl---~l~h 259 (338)
-|-+.-|+|.|.+++ +..+-+..+|+++. .-..|.|+|+.+-|....+ .+..+.|...| +.+.
T Consensus 101 ~PD~~vfDLDP~~~~~f~~v~~~A~~~r~~L~~lgL~s~~KTSG~kGlHV~vPl~~~~~---~~~vr~fa~~~A~~l~~~ 177 (231)
T cd04863 101 PPDRLVFDLDPGEPAGLVECARVALWLRDRLAALGLASFPKTSGSKGLHLYVPLDGPVS---SDQTKEFAKALARELERE 177 (231)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCccceECCCCCeEEEEEEcCCCCC---HHHHHHHHHHHHHHHHHH
Confidence 489999999999864 45555677777776 3345999999999965321 23344454444 1222
Q ss_pred HHHHHccccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 260 GEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 260 ~~al~a~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
.|.+.. .+.-|.-..+- .++.|..|+|...+=-|
T Consensus 178 ~P~~~t--~~~~k~~R~gr-----vfiDylqN~~g~T~vap 211 (231)
T cd04863 178 HPDLVV--SRMTKSLRAGK-----VFVDWSQNDAAKTTIAP 211 (231)
T ss_pred Cchhhh--hHhhHhhCCCc-----EEEECccCCCCCeEEec
Confidence 233322 22223222333 78999998888776555
No 30
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=45.37 E-value=13 Score=29.75 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=19.9
Q ss_pred HHcCCceeeecCCCCCCceEEEcCC
Q 019614 180 LYAGINISGINGEVMPGQWEFQVGP 204 (338)
Q Consensus 180 ~~~Gi~ve~~h~E~gpGQ~Ei~l~~ 204 (338)
-++|=++|++--+ +|||||||+.-
T Consensus 55 ~a~ge~ietIrI~-~pG~YeiNl~~ 78 (112)
T COG3364 55 GAQGEPIETIRIL-RPGVYEINLES 78 (112)
T ss_pred hcccCcceEEEEe-cCceEEEehhh
Confidence 5677788888887 69999999864
No 31
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=45.00 E-value=1.6e+02 Score=32.06 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.8
Q ss_pred ceeEeeeeEEEEecCCC
Q 019614 123 EPWYGIEQEYTLLQKDI 139 (338)
Q Consensus 123 ~~~~g~E~EF~l~~~~~ 139 (338)
...+|+|-|+.+++.+.
T Consensus 18 ~~~~GiE~E~lrVd~~g 34 (752)
T PRK02471 18 QANFGLEKESLRVDSDG 34 (752)
T ss_pred cCCcceEeeeeEECCCC
Confidence 67899999999999863
No 32
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=41.60 E-value=2.1e+02 Score=26.43 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=58.6
Q ss_pred CCCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeecccCCCCCcHHHHHHHHHHH---HHHH
Q 019614 194 MPGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKL---GKRH 259 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl---~l~h 259 (338)
-|.+.-|+|.|.+++ +.++-+..+|+++. .-..|.|+|+.+-|....+ .+..+.|...| +.+.
T Consensus 98 ~PD~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~lgL~sf~KTSG~kGlHv~vPl~~~~~---~~~~r~fa~~iA~~l~~~ 174 (228)
T cd04865 98 HPDELVIDLDPQPGTSFEDVVEVALLVREVLDELGLRGYPKTSGARGLHIYVPIAPRYT---FEEVRRFAELLAREVERR 174 (228)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCC---HHHHHHHHHHHHHHHHHH
Confidence 389999999999774 45555667777776 3345899999999965321 23334444444 2222
Q ss_pred HHHHHccccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 260 GEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 260 ~~al~a~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
.|.+... +-.|.-..+- .++.|..|+|...+=-|
T Consensus 175 ~P~~~t~--~~~k~~R~gr-----vfiDylqN~~g~T~vap 208 (228)
T cd04865 175 LPDLATT--ERWKKERGGR-----VYLDYLQNARGKTLAAP 208 (228)
T ss_pred Cchhhhh--HhhHHhCCCC-----EEEECccCCCCCeEEec
Confidence 2333222 2222222333 78999999888766555
No 33
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=40.80 E-value=2.1e+02 Score=26.41 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=58.1
Q ss_pred CCCceEEEcCCCch--hHHhhHHHHHHHHhh--------cCCCCceeeeeeecccCCCCCcHHHHHHHHHHH---HHHHH
Q 019614 194 MPGQWEFQVGPCVG--ISSGDQLWMARYILE--------GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKL---GKRHG 260 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~--l~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl---~l~h~ 260 (338)
-|-+.-|+|.|.+. -+.++-+..+|+++. .-..|.|+|+.+-|.... +.+..+.|.-.| +.+..
T Consensus 99 ~PD~~vfDLDP~~~~f~~v~~~A~~~r~~L~~~gL~~f~KTSG~kGlHv~vPl~~~~---~~~~~r~fa~~lA~~l~~~~ 175 (228)
T cd04864 99 HPDLMVFDLDPSADDIEAVRTAALAVRELLDELGLPSFVKTTGSRGFHVVVPLDGRG---DFDDVRAFAAEAADALAKRD 175 (228)
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCC---CHHHHHHHHHHHHHHHHHHC
Confidence 48999999999843 134455566677776 334589999999996532 123344444444 22222
Q ss_pred HHHHccccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 261 EHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 261 ~al~a~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
|.+... +-.|.-..+- .++.|..|+|...+=-|
T Consensus 176 P~~~t~--~~~k~~R~gr-----vfiDylqN~~g~T~vap 208 (228)
T cd04864 176 PDLLTT--EARKAKRGDR-----VFLDIGRNAYGQTAVAP 208 (228)
T ss_pred chhhhH--HhhHHhCCCc-----EEEECccCCCCCeEEec
Confidence 332222 3333333333 78999999988776655
No 34
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed
Probab=32.54 E-value=2.5e+02 Score=29.77 Aligned_cols=98 Identities=8% Similarity=0.027 Sum_probs=58.9
Q ss_pred CCCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeecccC-CCCCcHHHHHHHHHHHHHHHHH
Q 019614 194 MPGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTKSM-RNDGGIDVIKKAIEKLGKRHGE 261 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~~-~~~~g~~~~~~fiaGl~l~h~~ 261 (338)
-|.+.-|+|.|.+++ ..++-+..+|+++. .-..|.|+|+.+-|... .+ .+..+.|.-.| ..++.
T Consensus 431 ~pd~~v~DLDP~~~~~~~~v~~~A~~~r~~L~~~gl~~~~ktSG~kGlhv~vPl~~~~~~---~~~~~~fa~~~-a~~~~ 506 (610)
T PRK09633 431 RPTEIVFDLDPPSRDEFPLAVEAALELKRLFDQFGLTSFVKTSGNKGLQLYIPLSKNAFT---YEETRLFTEFI-AEYLC 506 (610)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCCC---HHHHHHHHHHH-HHHHH
Confidence 489999999998876 56666677787777 33458999999999652 21 23344455555 22222
Q ss_pred HHH-c-cccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 262 HIA-A-YGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 262 al~-a-~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
.-. - ++.+-.|.-..+- .++.|..++|...+=-|
T Consensus 507 ~~~P~~~t~~~~k~~R~gr-----vfiDy~qN~~~~T~~ap 542 (610)
T PRK09633 507 SQFPELFTTERLKKNRGNR-----LYLDYVQHAEGKTIIAP 542 (610)
T ss_pred HHCcceehhhhhHhhCCCC-----EEEEcccCCCCCeEEec
Confidence 211 1 1223333333333 68888888887665444
No 35
>PF11679 DUF3275: Protein of unknown function (DUF3275); InterPro: IPR021693 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=28.51 E-value=32 Score=31.33 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=26.7
Q ss_pred EEEEEEEcCCCccCCCCh---HHHHHHHHcccccCccce
Q 019614 89 LVMCDAYTPAGEPIPTNK---RFNAAKVFGHPDVVAEEP 124 (338)
Q Consensus 89 ~V~cd~~~~~G~P~~~~p---R~~L~~~l~~l~~~G~~~ 124 (338)
-++.. .++-|+|+..|| |..|+++.++|.++||.+
T Consensus 167 ~Lfg~-lWplge~VKLD~TvDR~~lR~q~~rLg~LGY~~ 204 (214)
T PF11679_consen 167 ELFGE-LWPLGEPVKLDPTVDRRRLRQQRARLGQLGYAF 204 (214)
T ss_pred hhhhh-cccCCCceeccCccCHHHHHHHHHHHHhcCeee
Confidence 34443 345688887765 999999999999999864
No 36
>TIGR02776 NHEJ_ligase_prk DNA ligase D. Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by this model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This alignment models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku.
Probab=27.46 E-value=3.8e+02 Score=28.11 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=58.3
Q ss_pred CCCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeeccc-CCCCCcHHHHHHHHHHHHHHHHH
Q 019614 194 MPGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTKS-MRNDGGIDVIKKAIEKLGKRHGE 261 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~-~~~~~g~~~~~~fiaGl~l~h~~ 261 (338)
-|.+.-|+|.|.+.. ...+-+..+|+++. .-..|.|+|+.+-|.. .. +.+..+.|...| ..++.
T Consensus 390 ~Pd~~v~DLDP~~~~~f~~v~~~A~~~r~~L~~~gl~~~~KtSG~kGlhv~vPl~~~~~---~~~~~~~fa~~~-a~~~~ 465 (552)
T TIGR02776 390 KPDRIVFDLDPPPGVAFKLAVEAAQLMKQLLDELGLVSFVKTSGGKGLHVVVPLRPNTF---TWDETKLFAKAI-AEYLA 465 (552)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCC---CHHHHHHHHHHH-HHHHH
Confidence 489999999998764 35555667777776 3345899999999965 22 223345555555 23222
Q ss_pred HHHc--cccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 262 HIAA--YGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 262 al~a--~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
.-.. ++..-.|.-..+- .++.|..++|...+=-|
T Consensus 466 ~~~P~~~t~~~~k~~R~gr-----v~iDy~qn~~~~T~~ap 501 (552)
T TIGR02776 466 RQFPERFTTEMGKKNRVGR-----IFIDYLRNARGKTTVAP 501 (552)
T ss_pred HHCcceehhhhhHhhCCCC-----EEEEcccCCCCCeEEec
Confidence 2211 1222233332332 68888888887665544
No 37
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed
Probab=26.76 E-value=3.6e+02 Score=29.91 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=59.3
Q ss_pred CCCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeecccCCCCCcHHHHHHHHHHHHHHHHHH
Q 019614 194 MPGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEH 262 (338)
Q Consensus 194 gpGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl~l~h~~a 262 (338)
-|.+.-|+|.|.+++ ...+-+..+|.++. .-.-|.|+|+.+-|.... ..+..+.|.-.| ..++..
T Consensus 683 ~Pd~lvfDLDP~~~~~f~~v~~aA~~~r~~L~~lgL~sf~KTSG~kGlHv~vPl~~~~---~~~~~~~fa~~i-a~~l~~ 758 (860)
T PRK05972 683 VPDRLVFDLDPGPGVPWKAVVEAARLMRTRLDELGLESFLKTSGGKGLHVVVPLARRL---DWDEVKAFAQAV-CQHMAR 758 (860)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCceeeECCCCCeEEEEEEcCCCC---CHHHHHHHHHHH-HHHHHH
Confidence 489999999998864 45556667777776 334589999999996532 133445555555 333333
Q ss_pred HHc--cccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 263 IAA--YGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 263 l~a--~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
-.. ++.+..|.-..+- .++.|-.|+|...+=-|
T Consensus 759 ~~P~~~t~~~~k~~R~gr-----ifiDylqN~~g~T~vap 793 (860)
T PRK05972 759 DLPERFLAKMGKKNRVGK-----IFLDYLRNGRGATTVAA 793 (860)
T ss_pred HCchhehhhhhHhhCCCc-----EEEEccccCCCCeEEec
Confidence 222 2223334433333 67888877777655433
No 38
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=26.41 E-value=29 Score=29.13 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=14.8
Q ss_pred cCCceeeecCCCCCCceEEEcC
Q 019614 182 AGINISGINGEVMPGQWEFQVG 203 (338)
Q Consensus 182 ~Gi~ve~~h~E~gpGQ~Ei~l~ 203 (338)
.+-.+|++--. +|||||+||.
T Consensus 82 ~~~~iESIrI~-~pG~YElNL~ 102 (131)
T PF09845_consen 82 LNDRIESIRIL-EPGSYELNLE 102 (131)
T ss_pred cccCcceEEEe-cCceEEecHH
Confidence 44555555554 7999999984
No 39
>PRK09632 ATP-dependent DNA ligase; Reviewed
Probab=26.22 E-value=4e+02 Score=29.16 Aligned_cols=96 Identities=10% Similarity=0.123 Sum_probs=56.8
Q ss_pred CCceEEEcCCCchh---HHhhHHHHHHHHhh--------cCCCCceeeeeeecccCCCCCcHHHHHHHHHHH---HHHHH
Q 019614 195 PGQWEFQVGPCVGI---SSGDQLWMARYILE--------GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKL---GKRHG 260 (338)
Q Consensus 195 pGQ~Ei~l~~~~~l---~aAD~~~~~k~~ik--------~~~~GsG~H~h~Sl~~~~~~~g~~~~~~fiaGl---~l~h~ 260 (338)
|.+.-|+|.|.+++ ..+.-+..+|+++. .-.-|.|+|+.+-|.... ..+..+.|...| +.+..
T Consensus 135 PD~lv~DLDP~~~~~f~~v~~~A~~~r~~L~~lgL~~~~KTSG~kGlHv~vPl~~~~---~~~~~~~fa~~~A~~l~~~~ 211 (764)
T PRK09632 135 ATRLVFDLDPGEGVGLAECAEVARAVRDLLADIGLETFPVTSGSKGIHLYAPLDGPV---SSEGASVVAKEVARALEQDH 211 (764)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCceeeECCCCCeEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHC
Confidence 55899999998774 45555667777776 334589999999996532 123344454444 12222
Q ss_pred HHHHccccCcccCCCCCCCCCCCCceeeecCCCcceEEeC
Q 019614 261 EHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVG 300 (338)
Q Consensus 261 ~al~a~~~nSYkRl~p~~~ap~p~~~~WG~~NR~a~iRvp 300 (338)
|.+... +--|....+- .++.|..|+|...+=-|
T Consensus 212 P~~~t~--~~~k~~R~gk-----vfiDy~qN~~g~T~vap 244 (764)
T PRK09632 212 PDLVTS--TMTKSLRAGK-----VFVDWSQNNGSKTTIAP 244 (764)
T ss_pred cceehh--hhhHhhCCCC-----EEEECccCCCCCeEEec
Confidence 222221 2223333333 78888888888665544
No 40
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.94 E-value=1.3e+02 Score=21.38 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCceeeecCCCCC-Cc--eEEEcCCCc
Q 019614 171 IVNSHYKACLYAGINISGINGEVMP-GQ--WEFQVGPCV 206 (338)
Q Consensus 171 ~~~~l~~~l~~~Gi~ve~~h~E~gp-GQ--~Ei~l~~~~ 206 (338)
++.++.+.+.+.|+++..+++...+ |. ..+++...+
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~ 51 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST 51 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc
Confidence 3455556679999999999875443 44 444444333
No 41
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=25.37 E-value=1.1e+02 Score=22.27 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEcCC
Q 019614 168 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 204 (338)
Q Consensus 168 ~~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~ 204 (338)
..++++++...|...||.-.-...+...+.|++.+.-
T Consensus 30 s~~ll~~v~~lL~~lGi~~~i~~~~~~~~~y~l~i~~ 66 (77)
T PF14528_consen 30 SKELLEDVQKLLLRLGIKASIYEKKRKKGSYRLRISG 66 (77)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEEEECTTTEEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCeeEEEEEcCCCceEEEEECc
Confidence 3678888888899999999666555678889998854
No 42
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=22.51 E-value=2.9e+02 Score=27.31 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=51.8
Q ss_pred EEEEEEEEcCCCccCCCChHHHHHH--HHcccccCccceeEeeeeEEEEecCCCCCCCC-CCCCCCCCC-CCCc----cc
Q 019614 88 ILVMCDAYTPAGEPIPTNKRFNAAK--VFGHPDVVAEEPWYGIEQEYTLLQKDINWPLG-WPVGGYPGP-QGPY----YC 159 (338)
Q Consensus 88 a~V~cd~~~~~G~P~~~~pR~~L~~--~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~-~~~~g~~~~-~~~~----~~ 159 (338)
-.|+..=+.+.|.|.-..-|.+++- +.+.|+++|.. .+|.++-.+-+. +. .|. +.|.. -..| ++
T Consensus 24 ~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~------~r~i~~~DD~D~-lRKvP~-~~p~~~~~~ylg~Plt 95 (360)
T PF01921_consen 24 PYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKD------VRLIYFSDDMDP-LRKVPP-NVPNPELEKYLGKPLT 95 (360)
T ss_dssp EEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-E------EEEEEEE-TTSB------T-TS-CC-CCCCTTSBTT
T ss_pred cEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCC------EEEEEEeecCCc-ccCCCC-CCChHHHHHhcCCccc
Confidence 5677777889999999999999876 33445666765 677777544321 11 010 01111 0111 11
Q ss_pred ccC----cchHHHHHHHHHHHHHHHHcCCceeeec--CCCCCCceE
Q 019614 160 GVG----ADKALGRDIVNSHYKACLYAGINISGIN--GEVMPGQWE 199 (338)
Q Consensus 160 ~~~----~~~~~~~~~~~~l~~~l~~~Gi~ve~~h--~E~gpGQ~E 199 (338)
.++ ...++...+...+.+.|+..||++|.+- .-|..|.|.
T Consensus 96 ~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~ 141 (360)
T PF01921_consen 96 RVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYD 141 (360)
T ss_dssp TSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTH
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchH
Confidence 111 1134556677777777899999888664 335567654
No 43
>PF04417 DUF501: Protein of unknown function (DUF501); InterPro: IPR007511 This is a family of uncharacterised bacterial proteins.
Probab=22.19 E-value=87 Score=26.54 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=29.5
Q ss_pred ecCCCCCCeEEEEEEEEcCCCccCCC-----ChHHHHHHHHcccccCcc
Q 019614 79 KDPFRRGNNILVMCDAYTPAGEPIPT-----NKRFNAAKVFGHPDVVAE 122 (338)
Q Consensus 79 ~lPw~~~~~a~V~cd~~~~~G~P~~~-----~pR~~L~~~l~~l~~~G~ 122 (338)
.+||.. + .-|.|...-.||+|+|. ||+ |.+.+.+|++.|.
T Consensus 4 rc~~G~-P-~Vi~~~P~l~~g~PFPTlfwLtcP~--L~~~isrLE~~G~ 48 (139)
T PF04417_consen 4 RCPCGF-P-QVIRTAPRLVDGKPFPTLFWLTCPY--LVKAISRLEAEGG 48 (139)
T ss_pred cCCCCC-C-eEEEeccCCCCCccCCccHhhcCHH--HHHHHHHHHhcCH
Confidence 467765 3 34667765678999876 886 7788999998875
No 44
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=21.35 E-value=69 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=19.4
Q ss_pred cCCCcceEEeCCCCCCCCcceEEecCCCC
Q 019614 290 VANRGASIRVGRDTEKEGKGYFEDRRPAS 318 (338)
Q Consensus 290 ~~NR~a~iRvp~~~~~~~~~riE~R~~da 318 (338)
..|||-+||+|....-.. .++|++.-+.
T Consensus 7 ~snrSQAVRLP~e~~f~~-~~VeI~r~G~ 34 (74)
T COG4456 7 RSNRSQAVRLPKEFRFPE-DRVEIIREGD 34 (74)
T ss_pred ecCCeeeEecchheecCC-cEEEEEEeCC
Confidence 469999999996542222 3888876654
No 45
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=21.16 E-value=1.2e+02 Score=27.62 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCceeeecCCCCCCc-------eEEEcCCCc
Q 019614 169 RDIVNSHYKACLYAGINISGINGEVMPGQ-------WEFQVGPCV 206 (338)
Q Consensus 169 ~~~~~~l~~~l~~~Gi~ve~~h~E~gpGQ-------~Ei~l~~~~ 206 (338)
.++++.+..+++.+|+.+.+...|.+++- .|+.+.|+.
T Consensus 154 hP~m~~vl~AiE~lGfrL~~vdCEqa~yF~~a~PFVQEfEFvPTt 198 (270)
T COG4326 154 HPMMDGVLSAIEALGFRLRQVDCEQAKYFGGALPFVQEFEFVPTT 198 (270)
T ss_pred chHHHHHHHHHHhhccEeeeccccccccccccccceeEEEEeccC
Confidence 56788888888999999999999999864 477777764
Done!