Query 019615
Match_columns 338
No_of_seqs 317 out of 1946
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0571 Asparagine synthase (g 100.0 7.8E-79 1.7E-83 547.8 24.1 333 2-336 117-449 (543)
2 PLN02549 asparagine synthase ( 100.0 1.6E-74 3.5E-79 565.9 32.6 338 1-338 116-453 (578)
3 PRK09431 asnB asparagine synth 100.0 8E-75 1.7E-79 567.5 30.2 332 1-338 117-453 (554)
4 PTZ00077 asparagine synthetase 100.0 2.1E-74 4.6E-79 566.6 32.8 338 1-338 124-467 (586)
5 TIGR03104 trio_amidotrans aspa 100.0 3.5E-65 7.6E-70 505.3 29.7 316 1-338 118-521 (589)
6 TIGR01536 asn_synth_AEB aspara 100.0 1.9E-64 4.2E-69 490.3 31.1 317 1-338 116-467 (467)
7 TIGR03108 eps_aminotran_1 exos 100.0 8.9E-60 1.9E-64 472.5 28.6 316 1-337 118-560 (628)
8 COG0367 AsnB Asparagine syntha 100.0 9.6E-60 2.1E-64 459.6 26.6 320 1-335 117-446 (542)
9 cd01991 Asn_Synthase_B_C The C 100.0 7.2E-42 1.6E-46 309.8 17.8 223 96-337 1-265 (269)
10 PF00733 Asn_synthase: Asparag 100.0 9.3E-41 2E-45 299.6 16.3 224 94-334 1-254 (255)
11 KOG0573 Asparagine synthase [A 100.0 8.2E-36 1.8E-40 271.3 18.5 308 2-321 114-481 (520)
12 cd01910 Wali7 This domain is p 99.8 1.8E-20 3.9E-25 160.6 10.3 85 1-86 124-209 (224)
13 cd01909 betaLS_CarA_N Glutamin 99.8 1.5E-20 3.3E-25 160.4 9.6 75 1-78 100-199 (199)
14 cd00712 AsnB Glutamine amidotr 99.7 4.9E-17 1.1E-21 142.8 9.4 76 1-77 116-220 (220)
15 cd01996 Alpha_ANH_like_III Thi 99.6 1.6E-14 3.4E-19 119.8 11.6 122 112-246 3-128 (154)
16 TIGR03573 WbuX N-acetyl sugar 99.6 5.5E-14 1.2E-18 131.2 14.0 118 111-240 60-180 (343)
17 PF13537 GATase_7: Glutamine a 99.5 1.4E-14 3E-19 115.8 6.0 51 1-51 75-125 (125)
18 TIGR00268 conserved hypothetic 99.3 9.1E-12 2E-16 111.5 9.8 118 103-238 5-125 (252)
19 COG1606 ATP-utilizing enzymes 99.3 1.7E-11 3.7E-16 105.9 10.9 113 109-238 16-131 (269)
20 cd03766 Gn_AT_II_novel Gn_AT_I 99.3 5.3E-12 1.1E-16 107.2 6.1 61 1-63 118-179 (181)
21 cd00715 GPATase_N Glutamine am 99.2 2.2E-11 4.9E-16 109.1 9.0 71 1-73 153-224 (252)
22 PRK14561 hypothetical protein; 99.2 8.6E-11 1.9E-15 100.9 10.7 106 112-233 2-107 (194)
23 cd00553 NAD_synthase NAD+ synt 99.2 1.6E-10 3.4E-15 103.4 12.5 135 92-239 7-148 (248)
24 PRK06388 amidophosphoribosyltr 99.2 1.8E-10 3.9E-15 111.1 12.8 116 1-119 171-302 (474)
25 PRK07847 amidophosphoribosyltr 99.2 2.1E-10 4.4E-15 111.4 13.2 116 1-119 183-313 (510)
26 PRK09123 amidophosphoribosyltr 99.2 3E-10 6.4E-15 110.0 14.3 122 1-128 174-310 (479)
27 PRK08341 amidophosphoribosyltr 99.2 2.6E-10 5.6E-15 109.2 13.2 68 1-72 154-221 (442)
28 PRK08525 amidophosphoribosyltr 99.2 3.2E-10 7E-15 109.1 13.0 106 1-108 153-273 (445)
29 PRK07631 amidophosphoribosyltr 99.2 4.9E-10 1.1E-14 108.0 13.4 104 1-107 163-280 (475)
30 PRK13980 NAD synthetase; Provi 99.1 3.3E-10 7.1E-15 102.3 11.4 135 92-239 14-150 (265)
31 PRK00876 nadE NAD synthetase; 99.1 3.1E-10 6.7E-15 104.3 11.3 84 89-181 13-98 (326)
32 PRK07272 amidophosphoribosyltr 99.1 1E-09 2.2E-14 106.1 15.3 70 1-72 164-234 (484)
33 COG0603 Predicted PP-loop supe 99.1 1.8E-10 4E-15 98.8 8.9 150 112-287 4-165 (222)
34 TIGR00552 nadE NAD+ synthetase 99.1 3.7E-10 8E-15 101.1 11.1 136 90-239 4-146 (250)
35 cd01990 Alpha_ANH_like_I This 99.1 1.7E-10 3.6E-15 100.0 7.2 110 113-238 1-113 (202)
36 cd00714 GFAT Glutamine amidotr 99.1 1.7E-10 3.6E-15 100.9 7.2 62 1-66 152-214 (215)
37 PRK07349 amidophosphoribosyltr 99.1 1.1E-09 2.4E-14 106.2 12.8 116 1-118 188-322 (500)
38 cd00352 Gn_AT_II Glutamine ami 99.1 2.3E-10 5E-15 100.2 7.2 65 1-65 155-220 (220)
39 PRK06781 amidophosphoribosyltr 99.1 2.4E-09 5.2E-14 103.4 14.8 123 1-129 163-299 (471)
40 PF06508 QueC: Queuosine biosy 99.1 1.3E-09 2.9E-14 94.5 11.5 156 113-296 2-174 (209)
41 cd01907 GlxB Glutamine amidotr 99.1 2.9E-10 6.3E-15 101.5 7.3 63 1-66 182-248 (249)
42 PLN02440 amidophosphoribosyltr 99.1 4.3E-10 9.4E-15 109.1 8.7 68 1-70 153-221 (479)
43 PRK11106 queuosine biosynthesi 99.1 7.6E-10 1.6E-14 97.1 9.2 157 112-296 3-176 (231)
44 PF12481 DUF3700: Aluminium in 99.1 6.7E-10 1.4E-14 93.9 8.4 85 1-86 128-213 (228)
45 TIGR01134 purF amidophosphorib 99.0 7.6E-10 1.7E-14 106.6 8.9 70 1-73 154-224 (442)
46 PRK00143 mnmA tRNA-specific 2- 99.0 2.1E-09 4.5E-14 100.5 10.8 112 112-234 2-130 (346)
47 cd01998 tRNA_Me_trans tRNA met 99.0 3.5E-09 7.6E-14 99.2 11.6 112 112-234 1-127 (349)
48 cd01993 Alpha_ANH_like_II This 99.0 3.5E-09 7.5E-14 90.2 10.4 116 112-235 1-121 (185)
49 PRK05793 amidophosphoribosyltr 99.0 1.2E-09 2.6E-14 105.8 8.3 68 1-71 168-236 (469)
50 PRK00331 glucosamine--fructose 99.0 1.5E-09 3.2E-14 109.3 8.9 68 1-72 153-221 (604)
51 PF03054 tRNA_Me_trans: tRNA m 99.0 8.7E-10 1.9E-14 102.4 6.6 112 112-235 2-131 (356)
52 PRK09246 amidophosphoribosyltr 99.0 1.4E-09 3E-14 106.3 7.5 68 1-69 162-233 (501)
53 COG0482 TrmU Predicted tRNA(5- 98.9 4.3E-09 9.3E-14 96.6 10.0 110 110-231 3-127 (356)
54 PTZ00323 NAD+ synthase; Provis 98.9 1.5E-08 3.2E-13 92.0 13.3 139 97-241 31-183 (294)
55 PRK14665 mnmA tRNA-specific 2- 98.9 3.6E-09 7.9E-14 98.9 9.5 112 108-231 3-124 (360)
56 PF02540 NAD_synthase: NAD syn 98.9 3.5E-09 7.5E-14 94.0 8.4 136 93-241 3-141 (242)
57 PRK04527 argininosuccinate syn 98.9 6.6E-09 1.4E-13 97.5 10.3 109 110-229 2-118 (400)
58 TIGR01135 glmS glucosamine--fr 98.9 3.7E-09 8.1E-14 106.5 8.3 67 1-71 152-219 (607)
59 TIGR00884 guaA_Cterm GMP synth 98.9 1.4E-08 3.1E-13 93.2 11.0 116 103-233 10-130 (311)
60 PRK00509 argininosuccinate syn 98.9 1.4E-08 3E-13 95.7 10.3 110 111-230 3-119 (399)
61 PRK00919 GMP synthase subunit 98.8 2.1E-08 4.6E-13 91.6 10.8 121 97-233 9-132 (307)
62 PRK00768 nadE NAD synthetase; 98.8 3.8E-08 8.1E-13 87.9 11.7 142 98-242 24-173 (268)
63 PRK14664 tRNA-specific 2-thiou 98.8 3.6E-08 7.7E-13 92.1 11.8 111 110-232 5-120 (362)
64 PRK13981 NAD synthetase; Provi 98.8 4E-08 8.7E-13 97.6 12.8 139 92-241 260-407 (540)
65 TIGR00420 trmU tRNA (5-methyla 98.8 2.8E-08 6E-13 93.1 10.8 107 112-230 2-127 (352)
66 cd01712 ThiI ThiI is required 98.8 4.8E-08 1E-12 82.8 9.8 108 112-232 1-115 (177)
67 TIGR00364 exsB protein. This p 98.8 2.5E-08 5.5E-13 86.3 8.1 153 113-296 1-172 (201)
68 PTZ00295 glucosamine-fructose- 98.8 1.8E-08 3.9E-13 102.0 8.1 71 1-75 183-254 (640)
69 PRK08349 hypothetical protein; 98.8 6E-08 1.3E-12 83.8 10.0 110 112-233 2-118 (198)
70 TIGR02432 lysidine_TilS_N tRNA 98.7 9.3E-08 2E-12 81.9 11.0 107 112-233 1-112 (189)
71 PRK10696 tRNA 2-thiocytidine b 98.7 8.4E-08 1.8E-12 86.3 10.9 131 93-234 10-145 (258)
72 PRK13820 argininosuccinate syn 98.7 8.2E-08 1.8E-12 90.4 10.4 110 111-231 3-120 (394)
73 cd01999 Argininosuccinate_Synt 98.7 1.5E-07 3.3E-12 88.6 11.1 108 113-230 1-116 (385)
74 cd01997 GMP_synthase_C The C-t 98.7 8.2E-08 1.8E-12 87.5 8.8 108 112-233 1-113 (295)
75 PRK00074 guaA GMP synthase; Re 98.6 2.4E-07 5.2E-12 91.0 11.7 125 94-233 200-329 (511)
76 PLN00200 argininosuccinate syn 98.6 2E-07 4.3E-12 88.1 10.6 109 111-230 6-123 (404)
77 COG0037 MesJ tRNA(Ile)-lysidin 98.6 1.9E-07 4E-12 85.9 9.4 123 95-233 6-133 (298)
78 cd01986 Alpha_ANH_like Adenine 98.6 2.3E-07 4.9E-12 71.4 8.3 76 113-235 1-76 (103)
79 PRK01565 thiamine biosynthesis 98.6 2.1E-07 4.5E-12 88.7 9.7 109 110-234 176-293 (394)
80 PLN02347 GMP synthetase 98.6 2.6E-07 5.7E-12 90.7 10.4 122 101-234 220-349 (536)
81 TIGR00032 argG argininosuccina 98.6 2.4E-07 5.1E-12 87.6 9.6 104 112-230 1-116 (394)
82 PF01171 ATP_bind_3: PP-loop f 98.6 2.2E-07 4.7E-12 79.2 8.4 104 112-233 1-109 (182)
83 cd01992 PP-ATPase N-terminal d 98.6 5.4E-07 1.2E-11 76.8 10.6 104 112-233 1-109 (185)
84 PRK02628 nadE NAD synthetase; 98.5 9.8E-07 2.1E-11 89.8 13.2 144 92-241 341-495 (679)
85 COG0171 NadE NAD synthase [Coe 98.5 1.8E-06 3.9E-11 77.1 13.0 142 93-241 6-157 (268)
86 KOG2805 tRNA (5-methylaminomet 98.5 5.6E-07 1.2E-11 80.0 9.4 117 111-238 6-139 (377)
87 TIGR00342 thiazole biosynthesi 98.5 1.1E-06 2.4E-11 83.0 10.5 110 110-233 172-288 (371)
88 cd01995 ExsB ExsB is a transcr 98.5 1.2E-06 2.5E-11 73.7 9.4 87 112-233 1-89 (169)
89 PRK08384 thiamine biosynthesis 98.4 1.8E-06 3.8E-11 81.4 10.5 110 109-233 179-297 (381)
90 cd01994 Alpha_ANH_like_IV This 98.4 2.3E-06 4.9E-11 73.5 9.7 90 112-232 1-100 (194)
91 cd01713 PAPS_reductase This do 98.4 1.8E-06 3.9E-11 72.1 8.9 116 112-235 1-120 (173)
92 cd00713 GltS Glutamine amidotr 98.4 1.3E-06 2.8E-11 82.4 8.6 66 2-69 326-394 (413)
93 PRK05253 sulfate adenylyltrans 98.4 6.4E-06 1.4E-10 75.3 12.6 108 111-232 28-139 (301)
94 TIGR03679 arCOG00187 arCOG0018 98.3 2.7E-06 5.9E-11 74.4 9.2 89 115-232 2-98 (218)
95 COG2117 Predicted subunit of t 98.3 2.3E-06 5.1E-11 69.0 7.7 62 112-183 2-63 (198)
96 PRK01269 tRNA s(4)U8 sulfurtra 98.3 3.4E-06 7.4E-11 82.5 10.2 110 110-233 177-293 (482)
97 PRK05370 argininosuccinate syn 98.2 8.1E-06 1.8E-10 77.1 10.6 115 106-233 7-138 (447)
98 PF02568 ThiI: Thiamine biosyn 98.2 2.9E-06 6.2E-11 72.6 6.4 110 110-233 3-121 (197)
99 PF00764 Arginosuc_synth: Argi 98.2 6.3E-06 1.4E-10 77.3 8.9 110 114-233 1-121 (388)
100 COG1365 Predicted ATPase (PP-l 98.2 5.6E-06 1.2E-10 69.9 7.1 126 94-239 34-170 (255)
101 PRK10660 tilS tRNA(Ile)-lysidi 98.2 9.3E-06 2E-10 78.4 9.8 76 101-181 6-85 (436)
102 PRK08576 hypothetical protein; 98.1 2.8E-05 6E-10 74.5 12.3 121 95-232 217-342 (438)
103 PLN02339 NAD+ synthase (glutam 98.1 3.4E-05 7.5E-10 78.6 13.3 89 93-181 329-449 (700)
104 PTZ00394 glucosamine-fructose- 98.0 1.5E-05 3.4E-10 80.8 8.5 68 1-71 187-275 (670)
105 COG0137 ArgG Argininosuccinate 98.0 4.9E-05 1.1E-09 70.1 10.9 113 110-233 4-128 (403)
106 PLN02981 glucosamine:fructose- 98.0 1.8E-05 4E-10 80.6 8.1 68 1-71 181-272 (680)
107 TIGR02039 CysD sulfate adenyly 97.9 9.7E-05 2.1E-09 67.1 10.0 119 96-233 9-132 (294)
108 COG0034 PurF Glutamine phospho 97.9 5.3E-05 1.1E-09 71.3 8.2 65 1-67 160-225 (470)
109 KOG0572 Glutamine phosphoribos 97.7 0.00015 3.2E-09 66.6 7.7 68 1-70 163-235 (474)
110 PRK02090 phosphoadenosine phos 97.7 0.00024 5.2E-09 63.2 8.8 60 111-180 41-102 (241)
111 COG0519 GuaA GMP synthase, PP- 97.6 0.00041 8.9E-09 61.3 9.1 75 94-178 6-83 (315)
112 PRK12563 sulfate adenylyltrans 97.5 0.00091 2E-08 61.2 9.9 108 111-232 38-149 (312)
113 PF01507 PAPS_reduct: Phosphoa 97.4 0.0005 1.1E-08 57.6 7.2 107 112-233 1-112 (174)
114 COG0301 ThiI Thiamine biosynth 97.4 0.00061 1.3E-08 63.8 8.2 108 110-232 175-291 (383)
115 PRK08557 hypothetical protein; 97.4 0.003 6.6E-08 60.4 12.6 58 111-178 182-241 (417)
116 PRK11750 gltB glutamate syntha 97.4 0.00055 1.2E-08 73.5 8.2 65 2-68 336-403 (1485)
117 KOG1706 Argininosuccinate synt 97.3 0.00078 1.7E-08 60.2 7.1 123 111-244 6-138 (412)
118 PRK13795 hypothetical protein; 97.2 0.0016 3.5E-08 66.0 9.3 61 110-180 243-305 (636)
119 TIGR00289 conserved hypothetic 97.0 0.0071 1.5E-07 52.9 10.5 60 112-181 2-68 (222)
120 TIGR03442 conserved hypothetic 97.0 0.0024 5.2E-08 57.1 7.5 59 6-73 189-247 (251)
121 cd01908 YafJ Glutamine amidotr 97.0 0.0031 6.7E-08 56.7 8.3 60 4-69 180-256 (257)
122 PRK13794 hypothetical protein; 97.0 0.0037 8.1E-08 61.1 8.9 61 110-179 247-309 (479)
123 TIGR00434 cysH phosophoadenyly 96.9 0.0096 2.1E-07 51.8 10.4 58 111-178 14-73 (212)
124 cd01984 AANH_like Adenine nucl 96.9 0.0036 7.8E-08 46.0 6.2 21 113-133 1-21 (86)
125 COG0175 CysH 3'-phosphoadenosi 96.4 0.033 7.2E-07 50.1 10.6 114 110-235 39-155 (261)
126 TIGR02057 PAPS_reductase phosp 96.4 0.026 5.5E-07 49.7 9.5 66 110-182 25-90 (226)
127 TIGR03183 DNA_S_dndC putative 96.4 0.031 6.8E-07 53.9 10.6 123 109-233 12-151 (447)
128 PRK06850 hypothetical protein; 96.4 0.046 9.9E-07 53.5 11.8 133 99-233 22-172 (507)
129 KOG1622 GMP synthase [Nucleoti 96.4 0.018 3.9E-07 54.3 8.5 70 103-181 224-295 (552)
130 COG3969 Predicted phosphoadeno 96.0 0.045 9.8E-07 50.0 8.7 55 109-168 26-82 (407)
131 PF09147 DUF1933: Domain of un 95.9 0.045 9.8E-07 45.2 7.7 62 3-67 99-186 (201)
132 COG2102 Predicted ATPases of P 95.3 0.17 3.7E-06 43.7 9.5 60 112-181 2-69 (223)
133 PF01902 ATP_bind_4: ATP-bindi 95.0 0.068 1.5E-06 46.7 6.4 59 112-180 2-67 (218)
134 TIGR00290 MJ0570_dom MJ0570-re 94.9 0.27 6E-06 43.0 10.0 57 113-179 3-66 (223)
135 COG0449 GlmS Glucosamine 6-pho 94.9 0.098 2.1E-06 51.9 7.9 67 1-71 150-217 (597)
136 COG0367 AsnB Asparagine syntha 94.3 0.022 4.8E-07 56.7 1.9 51 270-331 419-469 (542)
137 KOG2303 Predicted NAD synthase 92.2 1.2 2.6E-05 43.0 9.7 70 112-181 351-449 (706)
138 KOG2840 Uncharacterized conser 84.9 4.2 9.2E-05 37.3 7.4 116 110-233 51-176 (347)
139 TIGR02055 APS_reductase thiore 78.9 5.2 0.00011 34.1 5.6 50 120-179 2-53 (191)
140 PLN02309 5'-adenylylsulfate re 78.2 13 0.00029 36.2 8.8 59 111-178 111-169 (457)
141 TIGR00424 APS_reduc 5'-adenyly 72.1 23 0.00049 34.7 8.6 59 111-178 116-174 (463)
142 KOG0053 Cystathionine beta-lya 67.8 94 0.002 29.8 11.5 117 97-227 80-199 (409)
143 PF13230 GATase_4: Glutamine a 64.7 17 0.00038 32.8 5.9 61 4-73 170-254 (271)
144 COG1856 Uncharacterized homolo 56.3 11 0.00023 33.0 2.7 17 110-126 54-70 (275)
145 PF08057 Ery_res_leader2: Eryt 55.0 5 0.00011 18.2 0.3 14 273-286 1-14 (14)
146 COG0041 PurE Phosphoribosylcar 52.8 37 0.00081 27.8 5.2 60 158-238 13-75 (162)
147 PRK05968 hypothetical protein; 48.1 1.7E+02 0.0036 27.9 9.9 118 99-231 68-188 (389)
148 PRK05967 cystathionine beta-ly 48.1 1.3E+02 0.0029 28.7 9.2 103 111-228 79-187 (395)
149 PF01053 Cys_Met_Meta_PP: Cys/ 47.3 70 0.0015 30.5 7.1 103 111-228 70-179 (386)
150 PRK05613 O-acetylhomoserine am 46.0 91 0.002 30.3 7.8 103 112-228 85-193 (437)
151 PF02677 DUF208: Uncharacteriz 44.2 1.2E+02 0.0026 25.5 7.1 93 119-226 7-110 (176)
152 PF07287 DUF1446: Protein of u 42.4 2.7E+02 0.0058 26.4 10.0 25 216-240 156-181 (362)
153 PRK07582 cystathionine gamma-l 41.6 86 0.0019 29.5 6.8 102 113-228 67-170 (366)
154 COG0626 MetC Cystathionine bet 40.8 1.8E+02 0.0038 28.0 8.6 106 110-227 77-186 (396)
155 KOG0399 Glutamate synthase [Am 39.2 56 0.0012 35.8 5.2 53 16-68 422-477 (2142)
156 PLN02360 probable 6-phosphoglu 38.8 32 0.0007 31.0 3.2 33 89-121 20-52 (268)
157 cd00614 CGS_like CGS_like: Cys 38.2 1.8E+02 0.0039 27.3 8.4 115 99-230 45-165 (369)
158 TIGR01329 cysta_beta_ly_E cyst 37.7 1.9E+02 0.0041 27.3 8.5 115 99-228 52-169 (378)
159 TIGR01198 pgl 6-phosphoglucono 37.4 35 0.00075 30.0 3.1 41 92-132 9-49 (233)
160 TIGR01328 met_gam_lyase methio 37.3 2.1E+02 0.0047 27.1 8.8 119 99-231 64-185 (391)
161 PF13519 VWA_2: von Willebrand 37.1 1.8E+02 0.0038 23.1 7.3 69 111-188 100-169 (172)
162 PRK08247 cystathionine gamma-s 36.9 2.4E+02 0.0051 26.5 9.0 115 99-228 57-174 (366)
163 PRK08574 cystathionine gamma-s 36.5 1.5E+02 0.0032 28.2 7.5 59 168-228 113-175 (385)
164 PRK08114 cystathionine beta-ly 35.9 1.8E+02 0.0038 27.9 7.9 106 110-228 76-187 (395)
165 PRK08776 cystathionine gamma-s 35.1 2.4E+02 0.0052 27.0 8.8 117 99-230 65-185 (405)
166 PRK08248 O-acetylhomoserine am 33.8 2.2E+02 0.0049 27.5 8.4 116 99-228 69-187 (431)
167 TIGR03301 PhnW-AepZ 2-aminoeth 33.6 3.7E+02 0.008 24.5 10.1 121 94-227 31-162 (355)
168 PRK08133 O-succinylhomoserine 32.7 2.6E+02 0.0055 26.6 8.5 115 99-227 66-183 (390)
169 PF08144 CPL: CPL (NUC119) dom 32.3 16 0.00035 29.8 0.2 28 22-49 2-29 (148)
170 PF00266 Aminotran_5: Aminotra 31.2 4.3E+02 0.0092 24.5 9.8 124 93-229 42-178 (371)
171 PRK03359 putative electron tra 31.2 1.9E+02 0.0041 25.9 6.8 55 114-176 84-144 (256)
172 TIGR01324 cysta_beta_ly_B cyst 29.6 3.8E+02 0.0082 25.4 9.0 102 112-228 66-173 (377)
173 PRK08134 O-acetylhomoserine am 29.1 2.4E+02 0.0051 27.4 7.7 101 113-228 81-187 (433)
174 PRK07810 O-succinylhomoserine 29.0 4.1E+02 0.0089 25.4 9.3 116 99-228 75-193 (403)
175 COG1435 Tdk Thymidine kinase [ 28.9 1.2E+02 0.0026 26.0 4.9 29 210-238 100-131 (201)
176 PRK06767 methionine gamma-lyas 28.5 2.9E+02 0.0062 26.2 8.1 107 112-230 77-186 (386)
177 cd01400 6PGL 6PGL: 6-Phosphogl 28.2 80 0.0017 27.4 3.9 39 94-132 6-44 (219)
178 PRK07503 methionine gamma-lyas 27.7 3.1E+02 0.0067 26.2 8.2 104 113-229 82-189 (403)
179 PRK08249 cystathionine gamma-s 27.6 2.5E+02 0.0054 26.8 7.5 21 210-230 169-189 (398)
180 KOG3157 Proline synthetase co- 27.3 23 0.00051 30.5 0.3 12 322-333 68-79 (244)
181 PRK06702 O-acetylhomoserine am 26.9 2.8E+02 0.0061 26.9 7.7 114 99-227 66-184 (432)
182 PF09938 DUF2170: Uncharacteri 26.3 2.9E+02 0.0063 22.3 6.4 40 4-44 22-61 (140)
183 PRK05939 hypothetical protein; 25.9 4.4E+02 0.0095 25.2 8.8 111 99-227 52-168 (397)
184 PRK09028 cystathionine beta-ly 25.6 4.7E+02 0.01 25.0 8.9 104 113-228 78-184 (394)
185 PRK08064 cystathionine beta-ly 25.5 3.5E+02 0.0077 25.6 8.1 100 113-228 71-176 (390)
186 PRK09762 galactosamine-6-phosp 25.3 1.1E+02 0.0023 26.9 4.2 36 93-132 14-49 (232)
187 PRK07050 cystathionine beta-ly 24.3 5.2E+02 0.011 24.5 9.0 113 99-228 70-188 (394)
188 PF00274 Glycolytic: Fructose- 24.3 2.2E+02 0.0047 26.8 6.1 33 91-123 230-262 (348)
189 cd01456 vWA_ywmD_type VWA ywmD 23.5 2.6E+02 0.0057 23.6 6.2 14 15-28 20-33 (206)
190 PTZ00285 glucosamine-6-phospha 23.3 1.6E+02 0.0035 26.1 5.0 45 89-133 10-55 (253)
191 PRK06460 hypothetical protein; 23.3 5E+02 0.011 24.4 8.7 120 92-229 47-169 (376)
192 TIGR03812 tyr_de_CO2_Arch tyro 23.1 5.9E+02 0.013 23.4 9.1 127 93-230 58-193 (373)
193 KOG3147 6-phosphogluconolacton 22.8 93 0.002 27.6 3.2 41 91-134 20-60 (252)
194 PLN02409 serine--glyoxylate am 22.4 6.7E+02 0.014 23.7 11.0 125 93-230 41-179 (401)
195 PRK06234 methionine gamma-lyas 22.1 6.6E+02 0.014 23.9 9.3 115 99-227 69-188 (400)
196 PRK02122 glucosamine-6-phospha 22.0 3.1E+02 0.0066 28.3 7.2 46 88-133 36-81 (652)
197 TIGR03436 acidobact_VWFA VWFA- 22.0 5.8E+02 0.013 22.9 8.9 72 110-192 164-251 (296)
198 PF01182 Glucosamine_iso: Gluc 21.6 2.7E+02 0.0058 23.6 5.9 41 94-134 4-44 (199)
199 PTZ00376 aspartate aminotransf 20.6 7.2E+02 0.016 23.4 10.0 105 116-238 102-222 (404)
200 cd01453 vWA_transcription_fact 20.5 5E+02 0.011 21.6 8.5 73 94-177 87-165 (183)
201 cd03319 L-Ala-DL-Glu_epimerase 20.4 6.5E+02 0.014 22.9 9.4 18 211-228 270-287 (316)
202 PF13768 VWA_3: von Willebrand 20.4 4.1E+02 0.009 20.9 6.6 12 56-67 28-39 (155)
203 PRK12342 hypothetical protein; 20.3 3.2E+02 0.007 24.4 6.2 55 114-176 81-141 (254)
204 PF05728 UPF0227: Uncharacteri 20.3 2.8E+02 0.006 23.4 5.6 76 150-225 4-86 (187)
205 TIGR01325 O_suc_HS_sulf O-succ 20.1 6.8E+02 0.015 23.5 8.9 66 163-229 110-178 (380)
206 PF04566 RNA_pol_Rpb2_4: RNA p 20.1 1.6E+02 0.0035 20.1 3.3 23 9-32 36-60 (63)
207 PRK07811 cystathionine gamma-s 20.0 3.4E+02 0.0074 25.7 6.8 19 210-228 166-184 (388)
No 1
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-79 Score=547.80 Aligned_cols=333 Identities=69% Similarity=1.140 Sum_probs=313.8
Q ss_pred ceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEEeeCCCCC
Q 019615 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCY 81 (338)
Q Consensus 2 l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~ 81 (338)
|+|||||+++|...++++++||++|++||||.++.++.++||||+|+|-..|+.|...||||++..+.+.+.||++|+|.
T Consensus 117 LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w~ 196 (543)
T KOG0571|consen 117 LDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEWF 196 (543)
T ss_pred hhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhhhceeecCCcceeecccccccCCCCchhh
Confidence 89999999999999999999999999999999988899999999999999999999999999999988889999999988
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHH
Q 019615 82 SEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLK 161 (338)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~ 161 (338)
....++.......+|+.|.+||++||.+++|+|++||||||||+||+++++.+.+.+. +.|.++++|++|+++++|..
T Consensus 197 ~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL~ 274 (543)
T KOG0571|consen 197 DENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDLL 274 (543)
T ss_pred hccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHHHHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhHH
Confidence 7666766666677999999999999999999999999999999999999998765321 22468999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccc
Q 019615 162 AAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 241 (338)
Q Consensus 162 ~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~ 241 (338)
.|++||+++|+.||++.++.++-+++++++++++|+++.+++++++++|+++++++++|+++||||+|+||+||||-+|+
T Consensus 275 aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIRastpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYfh 354 (543)
T KOG0571|consen 275 AARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIRASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYFH 354 (543)
T ss_pred HHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEecCCchHHHHHHHHhcceEEEEecCCchhhhcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHhhcccC
Q 019615 242 KAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDD 321 (338)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR~a~~~~ 321 (338)
++|+...|.+|..++++.||.+|++|+|+.+|+||+|+|+||||++++++|++||+++|+.....+..+||+||+||..+
T Consensus 355 ~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFLDk~F~~~~~sldPe~K~~k~~~~r~eK~vlrsafd~~ 434 (543)
T KOG0571|consen 355 KAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFLDKRFLELAMSLDPEEKMIKPKEGRIEKYVLRSAFDTT 434 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccccHHHHHHHhcCChhHhcCCcchhhHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999987544678999999999999
Q ss_pred CCCCCCCcccceecc
Q 019615 322 KQPYLPKVSHFLIMN 336 (338)
Q Consensus 322 ~~~~lP~~i~~~~~~ 336 (338)
.+|+||+.|-||.-.
T Consensus 435 ~~pyLP~eilwrqke 449 (543)
T KOG0571|consen 435 EKPYLPDEILWRQKE 449 (543)
T ss_pred CCCcChHHHHHHHHh
Confidence 999999999998654
No 2
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=1.6e-74 Score=565.91 Aligned_cols=338 Identities=84% Similarity=1.398 Sum_probs=295.4
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEEeeCCCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~ 80 (338)
+|+|||||++||.++++++++|||+|+|||||.+..++.++||||+|+|+..+++|++|||||++.++.++.++||++.+
T Consensus 116 ~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~~~I~~lpPGh~l~~~~~~~~~y~~~~~ 195 (578)
T PLN02549 116 MLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDCERFEEFPPGHYYSSKAGGFRRWYNPPW 195 (578)
T ss_pred hCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHhCCEEEeCCCeEEEEcCCCEEEEEeccc
Confidence 58999999999999999999999999999999875467899999999999999999999999999987667889999876
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchH
Q 019615 81 YSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDL 160 (338)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~ 160 (338)
.....++.++..++++++|.+||++|+.+|+|+|++||||+|||+|++++++...+...+..++.++++||+++++++|.
T Consensus 196 ~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~ 275 (578)
T PLN02549 196 FSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCVGLEGSPDL 275 (578)
T ss_pred CccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEecCCCCCCHH
Confidence 54333444567889999999999999999999999999999999999999887532100000113689999999988999
Q ss_pred HHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCccc
Q 019615 161 KAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (338)
Q Consensus 161 ~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~ 240 (338)
.+|+++|+++|++|+++.++.+++++.+++++++++++++..++.++++|++++.+++.|++|+|||+||||+|+||.+|
T Consensus 276 ~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~ 355 (578)
T PLN02549 276 KAAREVADYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYF 355 (578)
T ss_pred HHHHHHHHHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHhhhcChHhh
Confidence 99999999999999999999999999999999999987666667789999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHhhccc
Q 019615 241 HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDD 320 (338)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR~a~~~ 320 (338)
+.+|+...|..++.++++.++..++.|.|+++|++|+|+|+||||++||+++++||+++|+.++.+++.+|||||+|+++
T Consensus 356 ~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~~k~~~~~~~~~eK~iLR~a~~~ 435 (578)
T PLN02549 356 HKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLDKEFIDVAMSIDPEWKMIRPGEGRIEKWVLRKAFDD 435 (578)
T ss_pred hhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCCHHHHHHHHhCCHHHHhcCCCCCCCchHHHHHHHhh
Confidence 88886556777888888888888999999999999999999999999999999999999997522234689999999987
Q ss_pred CCCCCCCCcccceeccCC
Q 019615 321 DKQPYLPKVSHFLIMNMF 338 (338)
Q Consensus 321 ~~~~~lP~~i~~~~~~~~ 338 (338)
...++||++|.||.-..|
T Consensus 436 ~~~~~LP~~Il~R~K~~f 453 (578)
T PLN02549 436 EEDPYLPKHILWRQKEQF 453 (578)
T ss_pred cCcccCCHHHhCCCccCC
Confidence 445689999999986654
No 3
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=8e-75 Score=567.53 Aligned_cols=332 Identities=62% Similarity=1.037 Sum_probs=291.1
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEEeeCCCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~ 80 (338)
+|+|||||++||.++++++++|||+|+|||||.+..++.++||||+|+|+..+++|++|||||++.+++++.++||++.+
T Consensus 117 ~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~g~~~~y~~~~~ 196 (554)
T PRK09431 117 DLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCKTIKEFPPGHYYWSKDGEFVRYYQRDW 196 (554)
T ss_pred hCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHhcCCEEEECCCeEEEECCCcEEEecCCCc
Confidence 58999999999999999999999999999999986348899999999999999999999999999887777889999876
Q ss_pred CCC-CCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhh----hhhcCCCcceeeccCC
Q 019615 81 YSE-QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEA----ACQWGSQLHSFCIGLE 155 (338)
Q Consensus 81 ~~~-~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~----~~~~~~~~~~~t~~~~ 155 (338)
... ..++.++++++++++|.+||++|+.+|+|+|++||||+|||+|++++++...+... ...+..+++|||++++
T Consensus 197 ~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~ 276 (554)
T PRK09431 197 FDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE 276 (554)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC
Confidence 432 22344566889999999999999999999999999999999999999887532100 0000126899999999
Q ss_pred CCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhccc
Q 019615 156 GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (338)
Q Consensus 156 ~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~ 235 (338)
+++|..+|+++|+++|++|+++.++.+++++.++++++++++++++.+++++++|++++.+++.|++|+|||+||||+||
T Consensus 277 ~~~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElFg 356 (554)
T PRK09431 277 GSPDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFG 356 (554)
T ss_pred CCChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHcCCEEEEecCchhhhhc
Confidence 89999999999999999999999999999999999999999877666777899999999987789999999999999999
Q ss_pred CCcccccCCChhHHHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHH
Q 019615 236 GYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILR 315 (338)
Q Consensus 236 Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR 315 (338)
||.+|+.+|+...|..+..+++..++..++.|.|+++|++|+|+|+||||++||+++++||+++|+.++ +..+|||||
T Consensus 357 GY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~lv~~a~~ip~~~K~~~~--~~~~K~iLR 434 (554)
T PRK09431 357 GYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEARVPFLDKEFLDVAMRINPEDKMCGN--GKMEKHILR 434 (554)
T ss_pred CchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCceeecCcCCHHHHHHHHhCCHHHHhcCC--CCCCHHHHH
Confidence 999998777655666777777888888899999999999999999999999999999999999999852 235899999
Q ss_pred hhcccCCCCCCCCcccceeccCC
Q 019615 316 NAFDDDKQPYLPKVSHFLIMNMF 338 (338)
Q Consensus 316 ~a~~~~~~~~lP~~i~~~~~~~~ 338 (338)
+||++ +||++|.||.-..|
T Consensus 435 ~a~~~----~LP~~I~~R~K~~f 453 (554)
T PRK09431 435 EAFEG----YLPESILWRQKEQF 453 (554)
T ss_pred HHHhh----hCCHHHhCCCCCCC
Confidence 99999 99999999986554
No 4
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=2.1e-74 Score=566.62 Aligned_cols=338 Identities=61% Similarity=1.047 Sum_probs=293.8
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecC--CeEEEeeCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQ--GGLRRWYNP 78 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~--~~~~~~~~~ 78 (338)
+|+|||||++||.++++++++|||+|+|||||.+..++.++||||+|+|...+.+|++|||||++.++. +..++||+|
T Consensus 124 ~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~~~~~~~~y~~~ 203 (586)
T PTZ00077 124 HLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFVRYYNP 203 (586)
T ss_pred hcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHHHHhcCCEEEeCCCcEEEecCCcceeEEecCC
Confidence 589999999999999999999999999999998744678999999999999999999999999998864 467899998
Q ss_pred CCCCC--CCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhh--hhhhcCCCcceeeccC
Q 019615 79 PCYSE--QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSE--AACQWGSQLHSFCIGL 154 (338)
Q Consensus 79 ~~~~~--~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~--~~~~~~~~~~~~t~~~ 154 (338)
.+... ..++.++.+++++++|.+||++|+.+|+|+|++||||+|||+|++++++...+.. .++.+..+++|||+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~ 283 (586)
T PTZ00077 204 NWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGL 283 (586)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCC
Confidence 76432 2334456688999999999999999999999999999999999999988653110 0000013689999999
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcc
Q 019615 155 EGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (338)
Q Consensus 155 ~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf 234 (338)
++++|..+|+++|+++|++|+++.++.++.++.++++++++|+|+.+.+++++++|++++.+++.|++|+|||+||||+|
T Consensus 284 ~~~~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 284 EGSPDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred CCCchHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhc
Confidence 98999999999999999999999999999999999999999998776777789999999999999999999999999999
Q ss_pred cCCcccccCCChhHHHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHH
Q 019615 235 GGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWIL 314 (338)
Q Consensus 235 ~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~il 314 (338)
|||.+|+.+|+...|.+++.++++.++.+++.|.|+++|++|+|+|+||||++||+++++||+++|+.+..+++.+||||
T Consensus 364 gGY~~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~~K~~~~~~~~~~K~iL 443 (586)
T PTZ00077 364 GGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKATMAWGIEARVPFLDKDFLEYVMNIDPKYKMCNAFEGQMEKYIL 443 (586)
T ss_pred cCcHhhhhCcchHHHHHHHHHHHHHHhccCCchhhHHHHhcCceeecCcCCHHHHHHHHhCCHHHhcCCCCCCCCCHHHH
Confidence 99999988776556777776778888888999999999999999999999999999999999999998631124689999
Q ss_pred HhhcccCCCCCCCCcccceeccCC
Q 019615 315 RNAFDDDKQPYLPKVSHFLIMNMF 338 (338)
Q Consensus 315 R~a~~~~~~~~lP~~i~~~~~~~~ 338 (338)
|+||++..+++||++|.||.-..|
T Consensus 444 R~a~~~~~~~~LP~~I~~R~K~~F 467 (586)
T PTZ00077 444 RKAFEGLEKPYLPDEILWRQKEQF 467 (586)
T ss_pred HHHHhccCcCcCCHHHhCCcccCC
Confidence 999997455689999999976554
No 5
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=3.5e-65 Score=505.34 Aligned_cols=316 Identities=31% Similarity=0.501 Sum_probs=257.6
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc----------------------------
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------- 52 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~---------------------------- 52 (338)
+|+|||||++||+++++++++|||+|+|||||+.. ++.++||||+++|+..
T Consensus 118 ~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~ 196 (589)
T TIGR03104 118 RFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTI 196 (589)
T ss_pred HhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCch
Confidence 58999999999999999999999999999999985 7899999999998742
Q ss_pred cCCcEEeCCCcEEEec-CC--eEEEeeCCCCCCC---CCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHH
Q 019615 53 CERFISFPPGHIYSSK-QG--GLRRWYNPPCYSE---QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLV 126 (338)
Q Consensus 53 ~~~i~~l~pG~~~~~~-~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~i 126 (338)
+++|++|||||+++++ ++ ..++||++..... ...+.++.+++++++|.+||++|+.+|+|||++||||+|||+|
T Consensus 197 ~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~I 276 (589)
T TIGR03104 197 LKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLI 276 (589)
T ss_pred hhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCHHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHH
Confidence 4789999999999886 34 3578999864321 1123455678999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhhhcCCCcceeeccCCC-----CchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCcc
Q 019615 127 AAVASRYLADSEAACQWGSQLHSFCIGLEG-----SPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVT 201 (338)
Q Consensus 127 aa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-----~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~ 201 (338)
++++++... .++.|||+++++ .+|..+|+++|+++|++|+++.++++++++.+++++++.+.|..
T Consensus 277 aa~~~~~~~---------~~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~- 346 (589)
T TIGR03104 277 VGLLAEAGV---------DGLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMV- 346 (589)
T ss_pred HHHHHHhcC---------CCceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCC-
Confidence 999887642 468999999864 37999999999999999999999999999999999998887753
Q ss_pred ccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccccC------CC-----------hhHH----HH---------
Q 019615 202 TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA------PN-----------KEEF----HQ--------- 251 (338)
Q Consensus 202 ~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~------~~-----------~~~~----~~--------- 251 (338)
..+.+++|++++.+++ +++|+|||+||||+|+||.+|... |. ...+ ..
T Consensus 347 -~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (589)
T TIGR03104 347 -SHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFGGYHWYPPLAAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSG 424 (589)
T ss_pred -CchHHHHHHHHHHHhC-CCeEEeecCchHhcccCcHhHHHHHhhccCchHHHHHHHhccCHHHHHHHhhhhhhccchhH
Confidence 2245778889988765 799999999999999999876421 10 0000 00
Q ss_pred HH-------------HH-----HHHh-cccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchH
Q 019615 252 ET-------------CR-----KIKA-LHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKW 312 (338)
Q Consensus 252 ~~-------------~~-----~~~~-l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ 312 (338)
++ +. +++. +....+.+.|+++|++|+|+|+||||++|||||++||+++|++++ +|+
T Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa~svE~R~PFLD~~lve~a~~lP~~~k~~~~-----~K~ 499 (589)
T TIGR03104 425 EFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMAWGLEARVPFLDHELVELAARIPPELKLADG-----GKG 499 (589)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhhccccccCCccCHHHHHHHHhCCHHHhcCCC-----cCH
Confidence 00 00 0010 111225679999999999999999999999999999999999862 699
Q ss_pred HHHhhcccCCCCCCCCcccceeccCC
Q 019615 313 ILRNAFDDDKQPYLPKVSHFLIMNMF 338 (338)
Q Consensus 313 ilR~a~~~~~~~~lP~~i~~~~~~~~ 338 (338)
|||++|++ +||++|.||....|
T Consensus 500 iLR~a~~~----~lP~~i~~R~K~gf 521 (589)
T TIGR03104 500 VLKEAARG----VIPSEVIDRPKGYF 521 (589)
T ss_pred HHHHHHhh----hCCHHHhCCCCCCC
Confidence 99999999 99999999976554
No 6
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=1.9e-64 Score=490.33 Aligned_cols=317 Identities=44% Similarity=0.709 Sum_probs=264.7
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc----------------------------
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------- 52 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~---------------------------- 52 (338)
+|+|||||++||+++++++++||++|+|||||+.. ++.++||||+++|+..
T Consensus 116 ~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~ 194 (467)
T TIGR01536 116 RLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTF 194 (467)
T ss_pred HcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhccccCcCCCCHHHHHHHhccCccCCCCcc
Confidence 58999999999999999999999999999999986 7899999999988542
Q ss_pred cCCcEEeCCCcEEEecCC---eEEEeeCCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHH
Q 019615 53 CERFISFPPGHIYSSKQG---GLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAV 129 (338)
Q Consensus 53 ~~~i~~l~pG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~ 129 (338)
+++|++|||||+++++.+ ..++||.+. .....+.++++++++++|.++|++|+.+++|+|++||||+|||+|+++
T Consensus 195 ~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~ 272 (467)
T TIGR01536 195 FRGVFELEPGHDLPLEDDGLNIERYYWERR--DEHTDSEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAI 272 (467)
T ss_pred cCCcEEcCCCeEEEEeCCCceEEEEecCCC--CCCCCCHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHH
Confidence 478999999999988642 234566532 112234456789999999999999999999999999999999999999
Q ss_pred HHHHhchhhhhhhcCCCcceeeccCCC---CchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCch
Q 019615 130 ASRYLADSEAACQWGSQLHSFCIGLEG---SPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS 206 (338)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~t~~~~~---~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 206 (338)
+++...+ .++.+||+++++ .+|..+|+++|+++|++|+++.++++++.+.+++.+++++.|.. ....
T Consensus 273 a~~~~~~--------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~~~~p~~--~~~~ 342 (467)
T TIGR01536 273 ARREAPR--------GPVHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYHLEDPTT--IRAS 342 (467)
T ss_pred HHHhcCC--------CCceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHhhCCCCC--CchH
Confidence 9876531 268999998863 46788999999999999999999999998899999988876642 3345
Q ss_pred HHHHHHHHHhhhCCCeEEEecCchhhcccCCcccccCCChhHHHHHHH-HHHHhcccccccchhhhhhhcCccccCCCCC
Q 019615 207 TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETC-RKIKALHLYDCLRANKSTSAWGVEARVPFLD 285 (338)
Q Consensus 207 ~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~r~d~~~~~~gve~r~PflD 285 (338)
++.+.+++.+++.|++|++||+||||+|+||+++..++....+.+++. .+++.+...++++.|+++|++|+|+|+||||
T Consensus 343 ~~~~~l~~~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD 422 (467)
T TIGR01536 343 IPLYLLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALREELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLD 422 (467)
T ss_pred HHHHHHHHHHHhcCCEEEEecCcchhcccCchhhhhccccHHHHHHHHHHHHHHhCcccchhHHHHHhhccccccCCcCC
Confidence 778889999999999999999999999999998876543333322322 2344455556777899999999999999999
Q ss_pred HHHHHHHhcCCccccccCCCCCCcchHHHHhhcccCCCCCCCCcccceeccCC
Q 019615 286 KEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFLIMNMF 338 (338)
Q Consensus 286 ~~lve~~~~lP~~~k~~~~~~~~~~K~ilR~a~~~~~~~~lP~~i~~~~~~~~ 338 (338)
++||+|+++||+++|+.++ .+|||||++|++ +||++|.||....|
T Consensus 423 ~~lv~~a~~lp~~~k~~~~----~~K~iLR~a~~~----~lP~~i~~R~K~gf 467 (467)
T TIGR01536 423 HELVEYALSIPPEMKLRDG----KEKYLLREAFEG----YLPEEILWRKKEGF 467 (467)
T ss_pred HHHHHHHHhCCHHHhcCCC----CcHHHHHHHHhh----hCCHHHhcCCCCCC
Confidence 9999999999999999864 489999999999 99999999976544
No 7
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=8.9e-60 Score=472.49 Aligned_cols=316 Identities=26% Similarity=0.437 Sum_probs=250.6
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc---------------------------c
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------C 53 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~---------------------------~ 53 (338)
+|+|||||++||+.+++++++||++|+|||||+...++.++||||+++|+.. +
T Consensus 118 ~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~ 197 (628)
T TIGR03108 118 RFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIF 197 (628)
T ss_pred HcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchh
Confidence 5899999999999999999999999999999986435789999999998652 4
Q ss_pred CCcEEeCCCcEEEecCC----eEEEeeCCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHH
Q 019615 54 ERFISFPPGHIYSSKQG----GLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAV 129 (338)
Q Consensus 54 ~~i~~l~pG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~ 129 (338)
++|++|||||+++++.+ +.++||++...+....+.++++++++++|.+||+.|+.+++|+|+.||||+|||+|+++
T Consensus 198 ~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~ 277 (628)
T TIGR03108 198 KGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVAL 277 (628)
T ss_pred cCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHH
Confidence 79999999999988632 24689987643222224456788999999999999999999999999999999999999
Q ss_pred HHHHhchhhhhhhcCCCcceeeccCCC--CchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchH
Q 019615 130 ASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAST 207 (338)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~ 207 (338)
+++... .++.|||+++++ .+|..+|+++|+++|++|+++.+++++ .+.+++++++.+.|.. ..+..
T Consensus 278 ~~~~~~---------~~i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~~-~~~~~~~~~~~~~P~~--~~~~~ 345 (628)
T TIGR03108 278 MAGLSD---------TPVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPDD-FSLVDRLAGLYDEPFA--DSSAL 345 (628)
T ss_pred HHHhcC---------CCCcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHHH-HHHHHHHHHHhCCCCC--CchHH
Confidence 887542 468999999864 489999999999999999999999877 5677878777766642 22356
Q ss_pred HHHHHHHHhhhCCCeEEEecCchhhcccCCcccccC----------C----------------Ch--------h--H---
Q 019615 208 PMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA----------P----------------NK--------E--E--- 248 (338)
Q Consensus 208 ~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~----------~----------------~~--------~--~--- 248 (338)
+.+.+++.+++ +++|+|||+||||+|+||++|... | .. . .
T Consensus 346 ~~~~~~~~a~~-~~kV~LsG~GgDElf~GY~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (628)
T TIGR03108 346 PTYRVCELARK-RVTVALSGDGGDELFAGYRRYRWHMAEERVRGILPLGLRRPLFGTLGRLYPKADWAPRMLRAKTTFQA 424 (628)
T ss_pred HHHHHHHHHHC-CCCEEEeccchhhcccCcHHHHHHHHHHHHhhhCCHHHHHHHHHHHHhhCcccccchhhhhhhhhHhh
Confidence 77888887765 799999999999999999754310 0 00 0 0
Q ss_pred --------H-H------HHHHHH-----------------H-Hhc----c------------------cccccchhhhhh
Q 019615 249 --------F-H------QETCRK-----------------I-KAL----H------------------LYDCLRANKSTS 273 (338)
Q Consensus 249 --------~-~------~~~~~~-----------------~-~~l----~------------------~~~l~r~d~~~~ 273 (338)
+ . .+.... + ..+ . ..-+.+.|+++|
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lL~~~Dr~sM 504 (628)
T TIGR03108 425 LARDPLEGYFHSVSVLDNALRRQLFSPDFRRELQGYRAIEVLRRHAARAPTDDALSLAQYLDLKTYLPGDILTKVDRASM 504 (628)
T ss_pred hhcchHHHHHHHhhhcChHHHHHHHHHHhhhhcccCCHHHHHHHHhccccCCCHHHHHHHHHHHHhCccccccccCccch
Confidence 0 0 000000 0 000 0 001335799999
Q ss_pred hcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHhhcccCCCCCCCCcccceeccC
Q 019615 274 AWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFLIMNM 337 (338)
Q Consensus 274 ~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR~a~~~~~~~~lP~~i~~~~~~~ 337 (338)
++|+|+|+||||++|||||++||+++|++++ .+|+|||+||++ +||++|.||....
T Consensus 505 a~svE~R~PFLD~~lve~a~slP~~~k~~~~----~~K~iLR~a~~~----~LP~~I~~R~K~g 560 (628)
T TIGR03108 505 AHGLEVRVPLLDHRLVEWAAGLPPDLKLRGG----EGKYLLKKAMRP----YLPDDVLYRPKMG 560 (628)
T ss_pred hccccccCCCCCHHHHHHHHhCCHHHhcCCC----CchHHHHHHHHh----hCCHHHhCCCCCC
Confidence 9999999999999999999999999999874 589999999999 9999999986443
No 8
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-60 Score=459.64 Aligned_cols=320 Identities=40% Similarity=0.637 Sum_probs=268.2
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-----cCCcEEeCCCcEEEecCCe-EEE
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-----CERFISFPPGHIYSSKQGG-LRR 74 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-----~~~i~~l~pG~~~~~~~~~-~~~ 74 (338)
+|+|||||++||.++++|+++|||+|+|||||+.. ++.++||||+|+|+.+ |++|++|||||.++++.+. +++
T Consensus 117 ~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~faSE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~~~~ 195 (542)
T COG0367 117 HLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRR 195 (542)
T ss_pred HhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEEechhhhhhCCcccccCCeEEcCCCcEEEEcCCCceee
Confidence 58999999999999999999999999999999986 6779999999999999 9999999999999998655 899
Q ss_pred eeCCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccC
Q 019615 75 WYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL 154 (338)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~ 154 (338)
||.+.+.... .+.++..++++++|.++|++|+++++|+|++||||+|||+|++++++..... ..++||+++
T Consensus 196 y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a~~~~~~~--------~~~~fsvg~ 266 (542)
T COG0367 196 YWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAAEELGKE--------GKTTFTVGF 266 (542)
T ss_pred eecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHHHHhcccc--------ceeeeEeec
Confidence 9998776433 3456678999999999999999999999999999999999999999986431 223599999
Q ss_pred CCCc--hHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhh
Q 019615 155 EGSP--DLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 155 ~~~~--e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
++++ |..+|+++|+.+|.+|+.+.++++++.+.+++++++.+.|+. +...+++|++++.+++.|.+|++||+||||
T Consensus 267 ~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADE 344 (542)
T COG0367 267 EDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVVKALDTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADE 344 (542)
T ss_pred CCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhcCCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHH
Confidence 8764 999999999999999999999999999999999999998875 456789999999999999999999999999
Q ss_pred cccCC-cccccCCChhH-HHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcc
Q 019615 233 IFGGY-LYFHKAPNKEE-FHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIE 310 (338)
Q Consensus 233 lf~Gy-~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~ 310 (338)
+|||| ++....+.... +.+++..++......++.|++++.+++|+|.|+||+|.+++.+++++|+..++..+. ....
T Consensus 345 lFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~~E~r~p~ld~~~~~l~l~~~~~~~i~~~~-~m~~ 423 (542)
T COG0367 345 LFGGYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAAAFGVEARVPFLDRELVDLALKIPPEHKLNRDR-SMAK 423 (542)
T ss_pred HhcCCchhhhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccCchHHHHHHHHhcCCcccccchhh-hhhh
Confidence 99999 45444444322 333344433333333356789999999999999999999999999999999987631 1235
Q ss_pred hHHHHhhcccCCCCCCCCcccceec
Q 019615 311 KWILRNAFDDDKQPYLPKVSHFLIM 335 (338)
Q Consensus 311 K~ilR~a~~~~~~~~lP~~i~~~~~ 335 (338)
|.++|-++.+. ..+|++|.|+..
T Consensus 424 ~le~Rvpf~~~--~~l~~~i~~~~K 446 (542)
T COG0367 424 KLERRVPFSDG--VELPEEIPWREK 446 (542)
T ss_pred hhheecccccc--hhhHhhCChhhh
Confidence 66777777771 238888888753
No 9
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=7.2e-42 Score=309.83 Aligned_cols=223 Identities=43% Similarity=0.692 Sum_probs=178.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHHhCCC
Q 019615 96 RKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTR 173 (338)
Q Consensus 96 ~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~lg~~ 173 (338)
+++|.+||+.|+.+++|||++||||+|||+|++++++... .++.+||++++ ..+|..+|+++|+++|++
T Consensus 1 r~~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~ 71 (269)
T cd01991 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP---------EPVKTFSIGFGFEGSDEREYARRVAEHLGTE 71 (269)
T ss_pred ChHHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC---------CCCceEEEeeCCCCCChHHHHHHHHHHhCCc
Confidence 3689999999999999999999999999999999988753 34778887664 456799999999999999
Q ss_pred ceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccccCCCh-------
Q 019615 174 HHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK------- 246 (338)
Q Consensus 174 ~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~~~~------- 246 (338)
|+++.++.+++.+.++..++..+.|.. ..+..+.+.+++.+++.|++|+|||+||||+|+||.++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~ 149 (269)
T cd01991 72 HHEVEFTPADLLAALPDVIWELDEPFA--DSSAIPLYLLSRLARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRL 149 (269)
T ss_pred ceEEEcCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHHHHHHHHhCCEEEEecCCccccccChHHHHHHHHHhhccccC
Confidence 999999988888888887777666542 23456778899999999999999999999999999876532110
Q ss_pred -------------hHHHHHHHHHHHhcccc--------------------cccchhhhhhhcCccccCCCCCHHHHHHHh
Q 019615 247 -------------EEFHQETCRKIKALHLY--------------------DCLRANKSTSAWGVEARVPFLDKEFINTAM 293 (338)
Q Consensus 247 -------------~~~~~~~~~~~~~l~~~--------------------~l~r~d~~~~~~gve~r~PflD~~lve~~~ 293 (338)
..+.+.+...+..+... -+.+.|+++|++|+|+|+||||.+|||||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~ 229 (269)
T cd01991 150 LGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFAL 229 (269)
T ss_pred cchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhcccccCCCCCHHHHHHHH
Confidence 00111111222222211 145689999999999999999999999999
Q ss_pred cCCccccccCCCCCCcchHHHHhhcccCCCCCCCCcccceeccC
Q 019615 294 SIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFLIMNM 337 (338)
Q Consensus 294 ~lP~~~k~~~~~~~~~~K~ilR~a~~~~~~~~lP~~i~~~~~~~ 337 (338)
+||.++|+.++ .+|+|||++|++ +||++|.|+..-.
T Consensus 230 ~lP~~~k~~~~----~~K~iLR~a~~~----~lP~~i~~r~K~g 265 (269)
T cd01991 230 SLPPELKIRGG----REKYLLREAAAG----LLPDEILWRPKRG 265 (269)
T ss_pred cCCHHHhcCCC----CchHHHHHHHHh----hCCHHHHcCCCCC
Confidence 99999999763 589999999999 9999999997543
No 10
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=100.00 E-value=9.3e-41 Score=299.55 Aligned_cols=224 Identities=35% Similarity=0.607 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCc--hHHHHHHHHHHhC
Q 019615 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSP--DLKAAREVADYLG 171 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--e~~~A~~~a~~lg 171 (338)
+|+++|.+||++|+.++.++++.||||+||++|++++++.. +.++.+||+++++.. |..+|+++|+++|
T Consensus 1 ~~r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~---------~~~~~~~t~~~~~~~~~e~~~a~~va~~~~ 71 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQG---------GPPIKTFTIGFEDDDYDEREYARKVARHLG 71 (255)
T ss_dssp HHHHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTC---------CSEEEEEEEECSSCC--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhh---------CCceeEEEEEcCCCcchhHHHHHHHhcccc
Confidence 68999999999999999999999999999999999999833 258999999998766 9999999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccccCCC----hh
Q 019615 172 TRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN----KE 247 (338)
Q Consensus 172 ~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~~~----~~ 247 (338)
++|+.+.++.+++.+.+++.++..+.|.........+.+.+++.+++.|++++|||+||||+|+||+.+..... ..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~ 151 (255)
T PF00733_consen 72 LEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLG 151 (255)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHH
T ss_pred cccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccccccchHhHHHHhhhhhhh
Confidence 99999999999988888888888877753112234566778888888999999999999999999976543221 11
Q ss_pred HHHHHHHHHHHh------------------------cccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccC
Q 019615 248 EFHQETCRKIKA------------------------LHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVR 303 (338)
Q Consensus 248 ~~~~~~~~~~~~------------------------l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~ 303 (338)
.....+...+.. +....+.+.+++++.+|+|+|+||||.+||+||++||.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~~~ 231 (255)
T PF00733_consen 152 RLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRFDG 231 (255)
T ss_dssp HHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCCET
T ss_pred hhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecCHHHHHHHHhCCHHHHcCC
Confidence 111122221111 11122456788999999999999999999999999999999987
Q ss_pred CCCCCcchHHHHhhcccCCCCCCCCccccee
Q 019615 304 PDLGRIEKWILRNAFDDDKQPYLPKVSHFLI 334 (338)
Q Consensus 304 ~~~~~~~K~ilR~a~~~~~~~~lP~~i~~~~ 334 (338)
+ ..|+|||++|++ +||++|+||.
T Consensus 232 ~----~~K~llR~a~~~----~lP~~i~~r~ 254 (255)
T PF00733_consen 232 G----IYKYLLREAMKD----LLPPEILWRK 254 (255)
T ss_dssp T----ECTHHHHHHHTC----CS-HHHHTS-
T ss_pred C----CCcHHHHHHHHh----hCCHHHhcCC
Confidence 4 579999999999 9999999985
No 11
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-36 Score=271.28 Aligned_cols=308 Identities=22% Similarity=0.283 Sum_probs=217.7
Q ss_pred ceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEEeeCCCCC
Q 019615 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCY 81 (338)
Q Consensus 2 l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~ 81 (338)
+.|.|+|++||.+.++||..||++|+++|-|...+.+.....|.... .-+.|.++||+-.......-.-.|.+....
T Consensus 114 ~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g~---~~~~i~e~~~~F~~~~~d~~~w~y~s~~le 190 (520)
T KOG0573|consen 114 LQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVGT---SGKLIYEVPPVFRNKLTDRVPWPYLSTKLE 190 (520)
T ss_pred ccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeecccc---CCccccccCchhhhccCCccccccccceec
Confidence 68999999999999999999999999999999864443333333221 124567899984433222111011100000
Q ss_pred C---CCCCC-------------CCccHHHHHHHHHHHHHHhhh-------c--------CCceEEEecCcccHHHHHHHH
Q 019615 82 S---EQIPS-------------NPYDPLVLRKAFEKAVVKRLM-------T--------DVPFGVLLSGGLDSSLVAAVA 130 (338)
Q Consensus 82 ~---~~~~~-------------~~~~~~~l~~~l~~av~~rl~-------~--------~~~v~v~LSGGlDSs~iaa~~ 130 (338)
. .+.++ ..+.+..+.+.+.++++.|.. + ..+|+|++|||+||++||.++
T Consensus 191 ~~~~~s~~p~~~i~~~~l~~~~~~~~v~~l~~~l~ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~ 270 (520)
T KOG0573|consen 191 NSLGPSLPPLCDISEIFLNQSHRSEVVSGLHTGLRDSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLA 270 (520)
T ss_pred ccCCCcCCCccchHHHHhhhHHHHHHHhhhHHHHHHHHhhhhhccChhHhhhccccccccCcEEEEecCCchHHHHHHHH
Confidence 0 00111 112244566677777776632 1 268999999999999999999
Q ss_pred HHHhchhhhhhhcCCCcceeeccCC---C-----CchHHHHHHHHHHhCC-------CceEEEeChhHHHHHHHHHHHhh
Q 019615 131 SRYLADSEAACQWGSQLHSFCIGLE---G-----SPDLKAAREVADYLGT-------RHHEFHFTVQEGIDALEEVIYHI 195 (338)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~t~~~~---~-----~~e~~~A~~~a~~lg~-------~~~~v~~~~~~~~~~l~~~~~~~ 195 (338)
....+.. .++...++.|. . .+|+..+++-++.|.. .+.+++++.+++....+. +.++
T Consensus 271 h~~vp~n-------e~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~-I~~L 342 (520)
T KOG0573|consen 271 HYVVPEN-------EPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEH-IKHL 342 (520)
T ss_pred HhhcCCC-------CceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHH-HHHh
Confidence 9987654 57777777773 2 2788888888877753 445666777776655444 5555
Q ss_pred ccCCccccCc--hHHHHHHHH---------HhhhCCCeEEEecCchhhcccCCcccccC---CChhHHHHHHHHHHHhcc
Q 019615 196 ETYDVTTIRA--STPMFLMSR---------KIKSLGVKMVISGEGSDEIFGGYLYFHKA---PNKEEFHQETCRKIKALH 261 (338)
Q Consensus 196 e~~~~~~~~~--~~~~~~l~~---------~a~~~g~~vvltG~GgDelf~Gy~~~~~~---~~~~~~~~~~~~~~~~l~ 261 (338)
-.|..+.++. +.++|+.++ ...+..++|+++|.||||+||||.+|+.. +....+.+|+.+++.++.
T Consensus 343 iyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~s~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~rIs 422 (520)
T KOG0573|consen 343 IYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYRSYARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLFRIS 422 (520)
T ss_pred hCcCccccccccceEEEEeeccccccccCccccccccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHhhhh
Confidence 4444332222 334566655 01234579999999999999999998733 233468899999999999
Q ss_pred cccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHhhcccC
Q 019615 262 LYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDD 321 (338)
Q Consensus 262 ~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR~a~~~~ 321 (338)
.+|+.|+||+...+|+|+|+||||..||+|..++|...|...+. .+++|.+||++.+..
T Consensus 423 ~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l~~~~k~~l~l-~GG~KlllRe~~~~l 481 (520)
T KOG0573|consen 423 HRNLGRDDRVIADSGKEVRSPFLDENVVKLSNALPVSVKMMLGL-RGGEKLLLREAGRRL 481 (520)
T ss_pred hcccCccchhhhccCceEeccchHHHHHHHHHhcchhHHhhhcc-cchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998776 347999999999863
No 12
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.83 E-value=1.8e-20 Score=160.61 Aligned_cols=85 Identities=36% Similarity=0.734 Sum_probs=76.1
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhcc-CCcEEeCCCcEEEecCCeEEEeeCCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDC-ERFISFPPGHIYSSKQGGLRRWYNPP 79 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~~~~~~~~~~~~~~~ 79 (338)
+|+|||||+|||+++++++++|||+|++||||.+..++.++||||+|+|...| +.+..+||||++.. .+.+++|++|.
T Consensus 124 ~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~ 202 (224)
T cd01910 124 DLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPM 202 (224)
T ss_pred hcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCC
Confidence 58999999999999999999999999999999976578999999999999999 78999999999875 66789999998
Q ss_pred CCCCCCC
Q 019615 80 CYSEQIP 86 (338)
Q Consensus 80 ~~~~~~~ 86 (338)
|.....|
T Consensus 203 ~~~~~vp 209 (224)
T cd01910 203 NKLKAVP 209 (224)
T ss_pred chhhcCC
Confidence 8644444
No 13
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.83 E-value=1.5e-20 Score=160.36 Aligned_cols=75 Identities=28% Similarity=0.539 Sum_probs=65.4
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc------------------cCCcEEeCCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD------------------CERFISFPPG 62 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~------------------~~~i~~l~pG 62 (338)
+|+|||||+|||++ ++|+++|||+|+|||||+. . +.++||||+|+|+++ +++|++||||
T Consensus 100 ~L~G~FAfai~D~~-~~L~laRDr~GikPLYy~~-~-~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG 176 (199)
T cd01909 100 LAEGDFCFFIEDGN-GRLTLATDHAGSVPVYLVQ-A-GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPG 176 (199)
T ss_pred HcCEEEEEEEEcCC-CEEEEEECCCCCcCeEEEE-C-CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCC
Confidence 58999999999999 9999999999999999987 3 789999999999753 5799999999
Q ss_pred cEEEecC-----C--eEEEeeCC
Q 019615 63 HIYSSKQ-----G--GLRRWYNP 78 (338)
Q Consensus 63 ~~~~~~~-----~--~~~~~~~~ 78 (338)
|++.++. + ..++||.|
T Consensus 177 ~~l~~~~~g~~~~~~~~~~yW~p 199 (199)
T cd01909 177 TVNVLTFDGGSYGTAESRRTWTP 199 (199)
T ss_pred cEEEEeeCCcccceEEEEEeecC
Confidence 9997641 1 35789976
No 14
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.70 E-value=4.9e-17 Score=142.84 Aligned_cols=76 Identities=41% Similarity=0.782 Sum_probs=67.8
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc---------------------------c
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------C 53 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~---------------------------~ 53 (338)
+|+|+|||++||+++++++++|||+|.+||||+.. ++.++||||+++|+.. +
T Consensus 116 ~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~ 194 (220)
T cd00712 116 RLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIF 194 (220)
T ss_pred HhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchh
Confidence 47999999999999999999999999999999986 7899999999998753 4
Q ss_pred CCcEEeCCCcEEEecCC--eEEEeeC
Q 019615 54 ERFISFPPGHIYSSKQG--GLRRWYN 77 (338)
Q Consensus 54 ~~i~~l~pG~~~~~~~~--~~~~~~~ 77 (338)
++|++|||||+++++.+ +.++||+
T Consensus 195 ~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 195 KGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred cCceEECCceEEEEECCCeEEeeeCC
Confidence 79999999999999754 4678984
No 15
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.58 E-value=1.6e-14 Score=119.82 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=83.9
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceee--ccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~ 189 (338)
.+.|++|||+||+++++++.+... .++.+++ .++....+...++++|+. |+++..+.++..++.+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHH
Confidence 478999999999999999987642 1344444 455434457899999999 8888777777655443322
Q ss_pred HHHH-hhccCCccccCch-HHHHHHHHHhhhCCCeEEEecCchhhcccCCcccccCCCh
Q 019615 190 EVIY-HIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK 246 (338)
Q Consensus 190 ~~~~-~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~~~~ 246 (338)
..+. ..+.|. ..+. .....+.+.|++.|++++++|+++||+|+||+++...+..
T Consensus 73 ~~l~~~~~~p~---~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~Gy~~~~~~~~~ 128 (154)
T cd01996 73 ARFKAKVGDPC---WPCDTAIFTSLYKVALKFGIPLIITGENPAQEFGGIREEEGGIID 128 (154)
T ss_pred HHHhcccCCCC---hhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcccccccccchhH
Confidence 2211 122232 2222 2334667788899999999999999999999987765443
No 16
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.56 E-value=5.5e-14 Score=131.17 Aligned_cols=118 Identities=16% Similarity=0.122 Sum_probs=87.1
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCc--ceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQL--HSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l 188 (338)
-.+.|++|||+||+++++++++... .++ .+|+.++....+...++++++++|++|+.+.++.+.+.+..
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~~g---------l~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~ 130 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKKLG---------LNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQ 130 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHhC---------CceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHH
Confidence 3489999999999999988865432 233 45555665334566999999999999999999887765555
Q ss_pred HHHHHhhccCCccccCch-HHHHHHHHHhhhCCCeEEEecCchhhcccCCccc
Q 019615 189 EEVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (338)
Q Consensus 189 ~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~ 240 (338)
...+.....|. ..+. .....+.+.|++.|+++|++|+++||+|+||..-
T Consensus 131 ~~~~~~~~~pc---~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~fgGy~~~ 180 (343)
T TIGR03573 131 RAYFKKVGDPE---WPQDHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSEE 180 (343)
T ss_pred HHHHhccCCCc---hhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHhcCCcccc
Confidence 55554433333 2222 3345677888999999999999999999998753
No 17
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.52 E-value=1.4e-14 Score=115.79 Aligned_cols=51 Identities=45% Similarity=0.702 Sum_probs=37.6
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhh
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSD 51 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~ 51 (338)
+|+|+|||++||+++++++++|||+|+|||||++.+++.++||||+++|++
T Consensus 75 ~l~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 75 RLDGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp T--EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred hCCceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 589999999999999999999999999999999963369999999999864
No 18
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.31 E-value=9.1e-12 Score=111.54 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=81.3
Q ss_pred HHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCC--CchHHHHHHHHHHhCCCceEEEeC
Q 019615 103 VVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGTRHHEFHFT 180 (338)
Q Consensus 103 v~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~~a~~lg~~~~~v~~~ 180 (338)
++..+.+..++.|++|||+||+++++++.+.. .++.++++..+. ..|...|+++|+++|++|+++.++
T Consensus 5 l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~g----------~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~ 74 (252)
T TIGR00268 5 LRNFLKEFKKVLIAYSGGVDSSLLAAVCSDAG----------TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKID 74 (252)
T ss_pred HHHHHHhcCCEEEEecCcHHHHHHHHHHHHhC----------CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcH
Confidence 33445556789999999999999999998762 467888876543 347789999999999999998875
Q ss_pred hhHHHHHHHHHHHhhccCCccccCchHH-HHHHHHHhhhCCCeEEEecCchhhcccCCc
Q 019615 181 VQEGIDALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (338)
Q Consensus 181 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvltG~GgDelf~Gy~ 238 (338)
. +.+. ... ..+. .+..+... +..+.+.|++.|+++++||+++|+++.+++
T Consensus 75 ~--~~~~---~~~--n~~~-~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rp 125 (252)
T TIGR00268 75 K--MINP---FRA--NVEE-RCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRP 125 (252)
T ss_pred H--HHHH---HHh--CCCc-ccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccH
Confidence 3 2211 111 1111 11111122 234567788899999999999999886543
No 19
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.31 E-value=1.7e-11 Score=105.90 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=81.8
Q ss_pred cCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCC--chHHHHHHHHHHhCCCceEEEeChhHHHH
Q 019615 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVADYLGTRHHEFHFTVQEGID 186 (338)
Q Consensus 109 ~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~e~~~A~~~a~~lg~~~~~v~~~~~~~~~ 186 (338)
+...+.|++|||+|||++|.+|.+.+. .++.++|+..+.. .+.+.|+..|+.+|+.|.++.++.-+
T Consensus 16 ~~~kv~vAfSGGvDSslLa~la~~~lG---------~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~--- 83 (269)
T COG1606 16 EKKKVVVAFSGGVDSSLLAKLAKEALG---------DNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD--- 83 (269)
T ss_pred hcCeEEEEecCCccHHHHHHHHHHHhc---------cceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc---
Confidence 345899999999999999999988763 5789999877653 36789999999999999999876422
Q ss_pred HHHHHHHhhccCCccccCchHH-HHHHHHHhhhCCCeEEEecCchhhcccCCc
Q 019615 187 ALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (338)
Q Consensus 187 ~l~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvltG~GgDelf~Gy~ 238 (338)
++..+..+.. +.-+--. .-.+-+.|.+.|.++|++|-.+|+++++=|
T Consensus 84 --~~~~~n~~~r---CY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RP 131 (269)
T COG1606 84 --PEFKENPENR---CYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRP 131 (269)
T ss_pred --hhhccCCCCc---chHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCc
Confidence 2333222211 1111111 223556778889999999999999998433
No 20
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.28 E-value=5.3e-12 Score=107.18 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=49.5
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEec-CCeEEEecccchhhhccCCcEEeCCCc
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL-DGSIWFASEMKALSDDCERFISFPPGH 63 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~-~~~~~faSe~~~l~~~~~~i~~l~pG~ 63 (338)
+|+|+|||++||+.+++++++|||+|+|||||++.. ++.|+|||+..... .....++||+.
T Consensus 118 ~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~--~~~~~e~~~~g 179 (181)
T cd03766 118 SIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS--GSGFQEVLAGG 179 (181)
T ss_pred hcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC--CCceEECCCCc
Confidence 589999999999999999999999999999999864 67899999965331 12455666643
No 21
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.25 E-value=2.2e-11 Score=109.08 Aligned_cols=71 Identities=31% Similarity=0.412 Sum_probs=62.0
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCeEE
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLR 73 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~ 73 (338)
+|+|+||+++||. ++++++||++|++||||+...++.++||||.++|... .+.+++|||||++.++.+.+.
T Consensus 153 ~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~ 224 (252)
T cd00715 153 RVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLE 224 (252)
T ss_pred hccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceE
Confidence 4789999999997 8899999999999999998633789999999999875 678999999999998755443
No 22
>PRK14561 hypothetical protein; Provisional
Probab=99.22 E-value=8.6e-11 Score=100.95 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=76.4
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEV 191 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~ 191 (338)
+++++||||+||+++++++.+.. + ..+.+++.++ .+|..+|+++|+.+|++|+.+.++.+. .+...+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~~-~--------v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~~-~~~~~~~ 69 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY-D--------VELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDREI-LEKAVDM 69 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC-C--------eEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHH
Confidence 48999999999999999886641 1 2345666665 357899999999999999999988653 5556666
Q ss_pred HHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhc
Q 019615 192 IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 192 ~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
++.++.|...+ ..+..+++...+ .|+++|++|+..|.+
T Consensus 70 ~~~~~~P~~~~--~~l~~~~l~~~a--~g~~~Ia~G~n~DD~ 107 (194)
T PRK14561 70 IIEDGYPNNAI--QYVHEHALEALA--EEYDVIADGTRRDDR 107 (194)
T ss_pred HHHcCCCCchh--HHHHHHHHHHHH--cCCCEEEEEecCCCc
Confidence 66666664321 122334444443 789999999999984
No 23
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.21 E-value=1.6e-10 Score=103.36 Aligned_cols=135 Identities=23% Similarity=0.270 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCC--CchHHHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADY 169 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~~a~~ 169 (338)
.+.+...|++.|+.. ....+.+.||||+||+++++++.+.... .++.++++.... ..|...|+++|++
T Consensus 7 ~~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~~~~--------~~v~~~~~~~~~~~~~~~~~a~~~a~~ 76 (248)
T cd00553 7 INALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRALGR--------ENVLALFMPSRYSSEETREDAKELAEA 76 (248)
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHHhCc--------ccEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 344445555555442 2357999999999999999999987632 368888886643 4588999999999
Q ss_pred hCCCceEEEeChhHHHHHHHHHHHhh--ccCCcc---ccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcc
Q 019615 170 LGTRHHEFHFTVQEGIDALEEVIYHI--ETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (338)
Q Consensus 170 lg~~~~~v~~~~~~~~~~l~~~~~~~--e~~~~~---~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~ 239 (338)
+|++|+++.+++ ..+.+...+... +.+... .+.+.+-+..+...|.+.|..|+-||+ .+|++.||..
T Consensus 77 lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G~~t 148 (248)
T cd00553 77 LGIEHVNIDIDP--AVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLGYFT 148 (248)
T ss_pred hCCeEEEeccHH--HHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhCCee
Confidence 999999987653 233322222211 111110 010111223455667788988888987 7788889864
No 24
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.20 E-value=1.8e-10 Score=111.08 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=81.8
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCeEEEeeC-C
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRRWYN-P 78 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~~~-~ 78 (338)
+|+|+|||++.+. ++|+++|||+|+|||||... ++.++||||.++|... .+.|+.|+||+++.+++..++.+.. +
T Consensus 171 ~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~ 247 (474)
T PRK06388 171 RLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLD 247 (474)
T ss_pred hccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecC
Confidence 5899999999865 78999999999999999985 6789999999999886 4479999999999887544433322 1
Q ss_pred CCCCC---------CCCC---CCccHHHHHHHHHHHHHHhhh--cCCceEEEecC
Q 019615 79 PCYSE---------QIPS---NPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLSG 119 (338)
Q Consensus 79 ~~~~~---------~~~~---~~~~~~~l~~~l~~av~~rl~--~~~~v~v~LSG 119 (338)
..... ..|+ +...+.+.|..+-+....... .|.-+.|.+||
T Consensus 248 ~~~~~~C~fE~iYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~ 302 (474)
T PRK06388 248 GDKVAHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSG 302 (474)
T ss_pred CCccccceEEEEeecCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCc
Confidence 10000 1121 223456677767666665543 23346778887
No 25
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.20 E-value=2.1e-10 Score=111.43 Aligned_cols=116 Identities=25% Similarity=0.323 Sum_probs=82.2
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCe--EEEeeC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGG--LRRWYN 77 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~--~~~~~~ 77 (338)
+|+|+|||+++|. ++|+++||++|+|||||.+. ++.++||||.++|... .+.|+.|+||+++.++.+. ..++|.
T Consensus 183 ~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~~~~ 259 (510)
T PRK07847 183 TVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTRFAE 259 (510)
T ss_pred HhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEeccC
Confidence 4799999999996 68999999999999999986 6789999999999876 6889999999999987543 344554
Q ss_pred CCCCCC-------CCCC---CCccHHHHHHHHHHHHHHhhhc--CCceEEEecC
Q 019615 78 PPCYSE-------QIPS---NPYDPLVLRKAFEKAVVKRLMT--DVPFGVLLSG 119 (338)
Q Consensus 78 ~~~~~~-------~~~~---~~~~~~~l~~~l~~av~~rl~~--~~~v~v~LSG 119 (338)
+....- ..|+ ....+.+.|..+-+.+.+.... |.=+.|..||
T Consensus 260 ~~~~~C~fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG 313 (510)
T PRK07847 260 PTPKGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313 (510)
T ss_pred CCCCCCeEEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCch
Confidence 321100 1221 2334667777766666554332 2224555564
No 26
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.20 E-value=3e-10 Score=109.98 Aligned_cols=122 Identities=27% Similarity=0.345 Sum_probs=83.9
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCe-EEEeeCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGG-LRRWYNP 78 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~-~~~~~~~ 78 (338)
+|+|+||+++|+. ++++++||++|+|||||... ++.++||||.++|... ...++.|+||+.+.++... ++.+...
T Consensus 174 ~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~ 250 (479)
T PRK09123 174 QVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPF 250 (479)
T ss_pred HhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEec
Confidence 4799999999986 68999999999999999985 6789999999999653 5678999999999887433 4332111
Q ss_pred CCCC-C---------CCCC---CCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHH
Q 019615 79 PCYS-E---------QIPS---NPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAA 128 (338)
Q Consensus 79 ~~~~-~---------~~~~---~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa 128 (338)
.... . ..|. ....+-++|..+.+.+.+....+.. .+.+=.||+..++
T Consensus 251 ~~~~~~~C~FE~VYfarPdS~~~g~~vy~~R~~~g~~La~~~~~~~D---~Vv~VP~sg~~~A 310 (479)
T PRK09123 251 PPQPARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDAD---VVVPVPDSGVPAA 310 (479)
T ss_pred CCCCCCCChhheEEecCCCceECCeEHHHHHHHHHHHHHHhCCCCCe---EEEEcCccHHHHH
Confidence 1111 0 1121 2345678888888888776543222 2334455554433
No 27
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.19 E-value=2.6e-10 Score=109.21 Aligned_cols=68 Identities=31% Similarity=0.494 Sum_probs=60.2
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeE
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGL 72 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 72 (338)
+|+|+|||++.+. ++++++||++|+|||||... +.++||||.++|......|+.|+||+++.++.+.+
T Consensus 154 ~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~--~~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~ 221 (442)
T PRK08341 154 EVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG--DGHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEV 221 (442)
T ss_pred hccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC--CEEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCce
Confidence 5899999999985 68999999999999999973 45899999999988888999999999998875533
No 28
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.17 E-value=3.2e-10 Score=109.14 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=73.9
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEec--CCeE--EEe
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSK--QGGL--RRW 75 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~--~~~~--~~~ 75 (338)
+|+|+|||+++|+ ++++++||++|+|||||....++.++||||.++|... .+.++.++||+++.++ ++.+ .++
T Consensus 153 ~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~ 230 (445)
T PRK08525 153 KIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQL 230 (445)
T ss_pred hcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEe
Confidence 5899999999985 6899999999999999987434689999999999543 4568889999999886 3223 233
Q ss_pred eCCCCCC-------CCCCC---CCccHHHHHHHHHHHHHHhhh
Q 019615 76 YNPPCYS-------EQIPS---NPYDPLVLRKAFEKAVVKRLM 108 (338)
Q Consensus 76 ~~~~~~~-------~~~~~---~~~~~~~l~~~l~~av~~rl~ 108 (338)
+...... -..|+ ....+-++|..+-+.+.+.+.
T Consensus 231 ~~~~~~~c~fe~iY~~rpds~~~g~~v~~~R~~~G~~La~~~~ 273 (445)
T PRK08525 231 FEPTPRICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFP 273 (445)
T ss_pred cCCCCccceeEeeeecCCCceECCEEHHHHHHHHHHHHHHHhc
Confidence 4321100 01121 233455677777666666554
No 29
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.15 E-value=4.9e-10 Score=108.05 Aligned_cols=104 Identities=23% Similarity=0.299 Sum_probs=74.0
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCeEEEee-CC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRRWY-NP 78 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~~-~~ 78 (338)
+|+|+|||+++|. ++++++|||+|+|||||... ++.++||||.++|... .+-++.|+||+++.+++..++.+- .+
T Consensus 163 ~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~ 239 (475)
T PRK07631 163 MLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAP 239 (475)
T ss_pred hCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCC
Confidence 5899999999996 57999999999999999986 6789999999999655 356889999999988754333221 11
Q ss_pred CCCCC---------CCCC---CCccHHHHHHHHHHHHHHhh
Q 019615 79 PCYSE---------QIPS---NPYDPLVLRKAFEKAVVKRL 107 (338)
Q Consensus 79 ~~~~~---------~~~~---~~~~~~~l~~~l~~av~~rl 107 (338)
..... ..|+ +...+.+.|..+-+.+.+..
T Consensus 240 ~~~~~~C~fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~ 280 (475)
T PRK07631 240 NQNRSICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEA 280 (475)
T ss_pred CCCcccceEEEEEeecCCcccCCeEHHHHHHHHHHHHHhhC
Confidence 11100 1121 23446677777766666544
No 30
>PRK13980 NAD synthetase; Provisional
Probab=99.15 E-value=3.3e-10 Score=102.26 Aligned_cols=135 Identities=25% Similarity=0.267 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADY 169 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~ 169 (338)
.+.+...+++.|+.. ....+.+.||||+||+++++++.+.... .++.++++... ...|...|+++|++
T Consensus 14 ~~~l~~~l~~~v~~~--g~~~vvv~lSGGiDSsv~a~l~~~~~~~--------~~v~av~~~~~~~~~~~~~~a~~la~~ 83 (265)
T PRK13980 14 REIIVDFIREEVEKA--GAKGVVLGLSGGIDSAVVAYLAVKALGK--------ENVLALLMPSSVSPPEDLEDAELVAED 83 (265)
T ss_pred HHHHHHHHHHHHHHc--CCCcEEEECCCCHHHHHHHHHHHHHhCc--------cceEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 344555555555542 2357999999999999999999887531 36788887654 33578899999999
Q ss_pred hCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcc
Q 019615 170 LGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (338)
Q Consensus 170 lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~ 239 (338)
+|++|+++++++ +.+.+...+..........+...+-+..+...|.+.|..|+-||+.. |.+.||..
T Consensus 84 lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~s-E~~~G~~t 150 (265)
T PRK13980 84 LGIEYKVIEITP--IVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKS-ELLLGYFT 150 (265)
T ss_pred hCCCeEEEECHH--HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHh-HHHhCCcc
Confidence 999999988754 33333222111000000001111223345666778898888899865 45566654
No 31
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.15 E-value=3.1e-10 Score=104.31 Aligned_cols=84 Identities=27% Similarity=0.297 Sum_probs=66.7
Q ss_pred CccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccC--CCCchHHHHHHH
Q 019615 89 PYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGSPDLKAAREV 166 (338)
Q Consensus 89 ~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~e~~~A~~~ 166 (338)
++.++.+.+.|+++|+.++.++ ++++.||||+||+++++++.+.... .++.++.+.. ...+|...|+.+
T Consensus 13 ~~~~e~i~~~l~~~V~~~~~~~-~VvVgLSGGIDSSvvaaLa~~a~g~--------~~v~av~~~~~~s~~~e~~~A~~l 83 (326)
T PRK00876 13 AAEAERIRAAIREQVRGTLRRR-GVVLGLSGGIDSSVTAALCVRALGK--------ERVYGLLMPERDSSPESLRLGREV 83 (326)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-CEEEEccCCHHHHHHHHHHHHhhCC--------CcEEEEEecCCCCChHHHHHHHHH
Confidence 3456889999999999988776 8999999999999999999876421 1344444332 234688999999
Q ss_pred HHHhCCCceEEEeCh
Q 019615 167 ADYLGTRHHEFHFTV 181 (338)
Q Consensus 167 a~~lg~~~~~v~~~~ 181 (338)
|+++|++|+.+.+++
T Consensus 84 A~~LGi~~~~i~i~~ 98 (326)
T PRK00876 84 AEHLGVEYVVEDITP 98 (326)
T ss_pred HHHcCCCEEEEECch
Confidence 999999999999875
No 32
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.14 E-value=1e-09 Score=106.05 Aligned_cols=70 Identities=31% Similarity=0.432 Sum_probs=59.5
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCeE
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGL 72 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~ 72 (338)
+|+|+|||++.+. ++|+++|||+|+|||||....++.++||||.++|... .+.|+.|+||+++.++.+.+
T Consensus 164 ~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~ 234 (484)
T PRK07272 164 TVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGI 234 (484)
T ss_pred HccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCce
Confidence 5899999999986 6899999999999999987435679999999999665 46688999999999875433
No 33
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=98.76 Aligned_cols=150 Identities=27% Similarity=0.340 Sum_probs=93.4
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHH--HHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGID--ALE 189 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~--~l~ 189 (338)
+..|.||||+||+++++.+.+.... .-..+|.+|+....|.+.|+++|+.+|++|+++.++.-.-+. .+.
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~~e--------v~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~saLt 75 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEGYE--------VHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSALT 75 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcCCE--------EEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCcCc
Confidence 4679999999999999999987632 134556677777789999999999999999988765321010 010
Q ss_pred -H---HHHh---hccCCccccC--chHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccccCCChhHHHHHHHHHHHhc
Q 019615 190 -E---VIYH---IETYDVTTIR--ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKAL 260 (338)
Q Consensus 190 -~---~~~~---~e~~~~~~~~--~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l 260 (338)
+ +... .+....+.++ |.+.+.+.+..|...|++.+++|-.+.+ |.|||..+ .+|.+.+..-+
T Consensus 76 d~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D-~sgYPDcr-----pefi~a~~~~~--- 146 (222)
T COG0603 76 DDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEED-FSGYPDCR-----PEFIEALNEAL--- 146 (222)
T ss_pred CCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccc-cCCCCCCC-----HHHHHHHHHHH---
Confidence 0 1000 0101111222 3333334455677789999999998877 67788643 23433332211
Q ss_pred ccccccchhhhhhhcCcc-ccCCCCCHH
Q 019615 261 HLYDCLRANKSTSAWGVE-ARVPFLDKE 287 (338)
Q Consensus 261 ~~~~l~r~d~~~~~~gve-~r~PflD~~ 287 (338)
.+++..|++ +..|+.+..
T Consensus 147 ---------~l~~~~~~~~i~aPl~~l~ 165 (222)
T COG0603 147 ---------NLGTEKGVRIIHAPLMELT 165 (222)
T ss_pred ---------HhhccCCccEEeCCeeecc
Confidence 345666777 488887643
No 34
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.14 E-value=3.7e-10 Score=101.09 Aligned_cols=136 Identities=21% Similarity=0.199 Sum_probs=88.3
Q ss_pred ccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC---CCchHHHHHHH
Q 019615 90 YDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE---GSPDLKAAREV 166 (338)
Q Consensus 90 ~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~---~~~e~~~A~~~ 166 (338)
...+++.+.|+++|+.+.. ..|.+.||||+||+++++++.+... ..+.++.+... ...|...|+++
T Consensus 4 ~~~~~l~~~l~~~v~~~~~--~~V~vglSGGiDSsvla~l~~~~~~---------~~~~~~~~~~~~~~~~~e~~~a~~~ 72 (250)
T TIGR00552 4 KYVEEIEDFLRGYVQKSGA--KGVVLGLSGGIDSAVVAALCVEALG---------EQNHALLLPHSVQTPEQDVQDALAL 72 (250)
T ss_pred hHHHHHHHHHHHHHHHhCC--CCEEEECCCcHHHHHHHHHHHHhhC---------CceEEEEECCccCCCHHHHHHHHHH
Confidence 3567899999999998753 4577789999999999999987652 23444433221 23578999999
Q ss_pred HHHhCCCceEEEeChhHHHHHHHHHHHhh-ccCCc--c-ccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcc
Q 019615 167 ADYLGTRHHEFHFTVQEGIDALEEVIYHI-ETYDV--T-TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (338)
Q Consensus 167 a~~lg~~~~~v~~~~~~~~~~l~~~~~~~-e~~~~--~-~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~ 239 (338)
|+.+|++++++.+++.. ..+....... +.... . .+...+-+..+...|.+.|+.++.||+.. |.+.||..
T Consensus 73 a~~lgi~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~-E~~~G~~t 146 (250)
T TIGR00552 73 AEPLGINYKNIDIAPIA--ASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKS-ELMLGYFT 146 (250)
T ss_pred HHHhCCeEEEEcchHHH--HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHH-HHhhCCee
Confidence 99999999998776432 2111100000 00000 0 00011334566777888999999999986 56778754
No 35
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.10 E-value=1.7e-10 Score=100.05 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=75.3
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~ 190 (338)
|.+++|||+||++++.++.+... .++.++++... ...|...++++|+++|++|+.+.++... ...+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---------~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~-- 68 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---------DRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEF-- 68 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---------CcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHH--
Confidence 57899999999999999988642 25677776443 3457889999999999999998876311 1111
Q ss_pred HHHhhccCCccccCchH-HHHHHHHHhhhCCCeEEEecCchhhcccCCc
Q 019615 191 VIYHIETYDVTTIRAST-PMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (338)
Q Consensus 191 ~~~~~e~~~~~~~~~~~-~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~ 238 (338)
....+.+ +..+.. .+-.+.+.|++.|+.++++|+++|+.+.+++
T Consensus 69 -~~~~~~~---~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~ 113 (202)
T cd01990 69 -AKNPPDR---CYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRP 113 (202)
T ss_pred -hcCCCCc---cchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccCh
Confidence 1111111 111111 2234567788899999999999999988653
No 36
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.10 E-value=1.7e-10 Score=100.94 Aligned_cols=62 Identities=31% Similarity=0.571 Sum_probs=56.4
Q ss_pred CceeeEEEEEEECCCC-EEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEE
Q 019615 1 MLDGMFSFVLLDTRDK-SFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYS 66 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~-~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~ 66 (338)
+|+|+|||++||+.++ +++++|| .|||||... ++.++||||+++|...+..|..|..|.++.
T Consensus 152 ~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 152 RLEGAYALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred HhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 4899999999998764 9999999 599999985 678999999999999999999999998865
No 37
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.09 E-value=1.1e-09 Score=106.19 Aligned_cols=116 Identities=25% Similarity=0.321 Sum_probs=78.8
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEec---CCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCeEEEe-
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL---DGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRRW- 75 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~- 75 (338)
+|+|+|||++.+. ++|+++||++|+|||||.... ++.++||||.++|... .+.|+.++||+++.++++.++.+
T Consensus 188 ~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~ 265 (500)
T PRK07349 188 RCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFH 265 (500)
T ss_pred HhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEe
Confidence 5899999999875 679999999999999998741 3579999999999654 46789999999998875433322
Q ss_pred eCCCCCCC---------CCCC---CCccHHHHHHHHHHHHHHhhh--cCCceEEEec
Q 019615 76 YNPPCYSE---------QIPS---NPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLS 118 (338)
Q Consensus 76 ~~~~~~~~---------~~~~---~~~~~~~l~~~l~~av~~rl~--~~~~v~v~LS 118 (338)
+.+..... ..|. +...+.+.|..+-+.+.+... .|.=++|..|
T Consensus 266 ~~~~~~~~~C~fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~s 322 (500)
T PRK07349 266 WAQEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDS 322 (500)
T ss_pred cccCCCcceeEEEeeeccCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 21111100 1121 234467788777776665443 2333555555
No 38
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.08 E-value=2.3e-10 Score=100.20 Aligned_cols=65 Identities=43% Similarity=0.682 Sum_probs=58.1
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhcc-CCcEEeCCCcEE
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDC-ERFISFPPGHIY 65 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~ 65 (338)
+++|.|+|+++|..+++++++||++|.+||||....++.++||||..++.... +.+.+++||+++
T Consensus 155 ~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 155 RLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred hCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 47899999999998899999999999999999985268899999999998765 789999999863
No 39
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.08 E-value=2.4e-09 Score=103.38 Aligned_cols=123 Identities=25% Similarity=0.336 Sum_probs=84.0
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCeEE--EeeC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLR--RWYN 77 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~--~~~~ 77 (338)
+|+|+|||+++|. ++++++||++|+|||||... ++.++||||.++|... .+-++.|+||+++.++.+.++ ++..
T Consensus 163 ~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~ 239 (471)
T PRK06781 163 KVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTN 239 (471)
T ss_pred hCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCc
Confidence 5899999999985 68999999999999999986 6789999999999754 356888999999988754333 2222
Q ss_pred CCCCC----C----CCCC---CCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHH
Q 019615 78 PPCYS----E----QIPS---NPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAV 129 (338)
Q Consensus 78 ~~~~~----~----~~~~---~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~ 129 (338)
+.... + ..|+ +...+.+.|..+-+...+....+.. .+.|=-||+..+|.
T Consensus 240 ~~~~~~C~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D---~vv~VP~s~~~~A~ 299 (471)
T PRK06781 240 EVDHAICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEAD---VVTGVPDSSISAAI 299 (471)
T ss_pred CcccccceEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCCCCCc---EEEEcChhHHHHHH
Confidence 11100 0 1121 2234667777776666665433322 34556677766653
No 40
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.07 E-value=1.3e-09 Score=94.47 Aligned_cols=156 Identities=24% Similarity=0.311 Sum_probs=81.4
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCc--ceeeccCCCCchHHHHHHHHHHhCC-CceEEEeCh-hHH----
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQL--HSFCIGLEGSPDLKAAREVADYLGT-RHHEFHFTV-QEG---- 184 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~e~~~A~~~a~~lg~-~~~~v~~~~-~~~---- 184 (338)
+.++||||+||+++++.+.+.. .++ .+|.+|+....|.+.|+++|+++|+ +|+++.++. .++
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~----------~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~ 71 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEG----------YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSA 71 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH-----------SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcC----------CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCc
Confidence 5789999999999999998775 244 4555677766799999999999999 999999872 111
Q ss_pred -HHH---HHHHHHhhccCCccccCch--HHHHHHHHHhhhCCCeEEEecCchhhcccCCcccccCCChhHHHHHHHHHHH
Q 019615 185 -IDA---LEEVIYHIETYDVTTIRAS--TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIK 258 (338)
Q Consensus 185 -~~~---l~~~~~~~e~~~~~~~~~~--~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~ 258 (338)
.+. +++.-...+......++.. +.+-..+..|.+.|+..++.|..+++ +.||+.... +|.+.+.+
T Consensus 72 L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D-~~~ypDc~~-----~F~~~~~~--- 142 (209)
T PF06508_consen 72 LTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAED-ASGYPDCRP-----EFIDAMNR--- 142 (209)
T ss_dssp HHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-S-TT--GGGSH-----HHHHHHHH---
T ss_pred ccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCc-cCCCCCChH-----HHHHHHHH---
Confidence 111 1110000011111223322 22223345567789999999998877 578876432 33333322
Q ss_pred hcccccccchhhhhhhcCccccCCCCCH---HHHHHHhcCC
Q 019615 259 ALHLYDCLRANKSTSAWGVEARVPFLDK---EFINTAMSID 296 (338)
Q Consensus 259 ~l~~~~l~r~d~~~~~~gve~r~PflD~---~lve~~~~lP 296 (338)
+.. ......+++..||++. ++++.+..+.
T Consensus 143 -~~~--------~~~~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 143 -LLN--------LGEGGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp -HHH--------HHHTS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred -HHH--------hcCCCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 111 1244678888999885 5666666654
No 41
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.07 E-value=2.9e-10 Score=101.52 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=56.2
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc----cCCcEEeCCCcEEE
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD----CERFISFPPGHIYS 66 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~----~~~i~~l~pG~~~~ 66 (338)
+|+|+|||+++++ +.++++|||+|.|||||... ++.++||||.++|... .+.+..++||+++.
T Consensus 182 ~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 182 DLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred cCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence 5899999999986 46899999999999999986 6789999999999876 47788999999875
No 42
>PLN02440 amidophosphoribosyltransferase
Probab=99.06 E-value=4.3e-10 Score=109.15 Aligned_cols=68 Identities=32% Similarity=0.473 Sum_probs=59.0
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQG 70 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~ 70 (338)
+|+|+||+++||. ++|+++||++|+|||||....++.++||||.++|... .+.|+.|+||+++.++.+
T Consensus 153 ~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~ 221 (479)
T PLN02440 153 KLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKD 221 (479)
T ss_pred HhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECC
Confidence 4799999999996 4699999999999999986445679999999999775 577899999999988643
No 43
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.06 E-value=7.6e-10 Score=97.12 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=95.0
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCC-ceEEEeChhHHH--H
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTR-HHEFHFTVQEGI--D 186 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~-~~~v~~~~~~~~--~ 186 (338)
++.|+||||+||+++++++.+.. .++.++++ |.....|.+.|+++|+++|++ |+++.++.-..+ .
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~----------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s 72 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY----------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVS 72 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC----------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 58999999999999999986643 24555555 444456899999999999996 998877631100 0
Q ss_pred HHHHH---HH--hh--ccCCccccCchHHHH-HHH-HHhhhCCCeEEEecCchhhcccCCcccccCCChhHHHHHHHHHH
Q 019615 187 ALEEV---IY--HI--ETYDVTTIRASTPMF-LMS-RKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKI 257 (338)
Q Consensus 187 ~l~~~---~~--~~--e~~~~~~~~~~~~~~-~l~-~~a~~~g~~vvltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~ 257 (338)
.+.+. +. .. +.+....+++....+ .++ ..|.+.|++.|+.|-.+|+. +||+.-+ .+|.+.+..
T Consensus 73 ~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~-~~YpDcr-----~~Fi~A~~~-- 144 (231)
T PRK11106 73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDF-SGYPDCR-----DEFVKALNH-- 144 (231)
T ss_pred ccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcC-CCCCCCC-----HHHHHHHHH--
Confidence 11000 00 00 111112233332222 233 35778899999999999884 7787532 344443322
Q ss_pred HhcccccccchhhhhhhcCccccCCCCC---HHHHHHHhcCC
Q 019615 258 KALHLYDCLRANKSTSAWGVEARVPFLD---KEFINTAMSID 296 (338)
Q Consensus 258 ~~l~~~~l~r~d~~~~~~gve~r~PflD---~~lve~~~~lP 296 (338)
+. +.++..++.+..||++ .++++.+..+-
T Consensus 145 --~~--------~~~~~~~i~I~aPl~~lsK~eI~~l~~~lg 176 (231)
T PRK11106 145 --AV--------SLGMAKDIRFETPLMWLNKAETWALADYYG 176 (231)
T ss_pred --HH--------HhccCCCcEEEecCCCCCHHHHHHHHHHcC
Confidence 11 1223345889999988 36777766544
No 44
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=99.05 E-value=6.7e-10 Score=93.88 Aligned_cols=85 Identities=38% Similarity=0.779 Sum_probs=70.8
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccC-CcEEeCCCcEEEecCCeEEEeeCCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCE-RFISFPPGHIYSSKQGGLRRWYNPP 79 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~-~i~~l~pG~~~~~~~~~~~~~~~~~ 79 (338)
+|+|.||||+||..++++++|||.-|..||||....+|.++||+++..|...|. ..-..|+|+++..+ +.++.|-+|.
T Consensus 128 ~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~ 206 (228)
T PF12481_consen 128 DLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPK 206 (228)
T ss_pred hccCceEEEEEecCCCcEEEeecCCCCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCc
Confidence 489999999999999999999999999999999988899999999999877775 45689999998766 4466776665
Q ss_pred CCCCCCC
Q 019615 80 CYSEQIP 86 (338)
Q Consensus 80 ~~~~~~~ 86 (338)
......|
T Consensus 207 nk~k~~p 213 (228)
T PF12481_consen 207 NKVKAMP 213 (228)
T ss_pred ccccccc
Confidence 4433333
No 45
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.03 E-value=7.6e-10 Score=106.55 Aligned_cols=70 Identities=30% Similarity=0.443 Sum_probs=60.6
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhh-ccCCcEEeCCCcEEEecCCeEE
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSD-DCERFISFPPGHIYSSKQGGLR 73 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~-~~~~i~~l~pG~~~~~~~~~~~ 73 (338)
+|+|+|+++++|. ++++++||++|.+||||.+. ++.++||||..+|.. ..+.++.|+||+.+.++.+.++
T Consensus 154 ~l~G~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~ 224 (442)
T TIGR01134 154 RVRGAYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLE 224 (442)
T ss_pred HhCccceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEE
Confidence 5799999999974 68999999999999999986 678999999999975 3578999999999988765443
No 46
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.01 E-value=2.1e-09 Score=100.49 Aligned_cols=112 Identities=21% Similarity=0.185 Sum_probs=76.8
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC------------CCchHHHHHHHHHHhCCCceEEEe
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE------------GSPDLKAAREVADYLGTRHHEFHF 179 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~------------~~~e~~~A~~~a~~lg~~~~~v~~ 179 (338)
+|++++|||+||+++++++.+.. .++.++++... ...|...|+++|+++|++|+++++
T Consensus 2 kVlValSGGvDSsvla~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQG----------YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 58999999999999999998753 45777776542 124678999999999999999988
Q ss_pred ChhHHHHHHHHHHHh---hccCCccccCchH-H-HHHHHHHhhhCCCeEEEecCchhhcc
Q 019615 180 TVQEGIDALEEVIYH---IETYDVTTIRAST-P-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (338)
Q Consensus 180 ~~~~~~~~l~~~~~~---~e~~~~~~~~~~~-~-~~~l~~~a~~~g~~vvltG~GgDelf 234 (338)
..+...+.++..+.. -.+|+ ++..+.. . +..+.+.|.+.|++.+.||+.+|...
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tpn-pc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTPN-PCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-cChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 653222222222221 12332 2332222 2 23566778889999999999998754
No 47
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.99 E-value=3.5e-09 Score=99.16 Aligned_cols=112 Identities=25% Similarity=0.222 Sum_probs=74.9
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC----------CCchHHHHHHHHHHhCCCceEEEeCh
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE----------GSPDLKAAREVADYLGTRHHEFHFTV 181 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~----------~~~e~~~A~~~a~~lg~~~~~v~~~~ 181 (338)
+|++++|||+||+++++++.+.. .++.++++... ...|...|+++|+.+|++|+.++++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~g----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 47899999999999999998753 35555554211 12578899999999999999999875
Q ss_pred hHHHHHHHHHHHhh---ccCCccccCchH-H-HHHHHHHhhhCCCeEEEecCchhhcc
Q 019615 182 QEGIDALEEVIYHI---ETYDVTTIRAST-P-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (338)
Q Consensus 182 ~~~~~~l~~~~~~~---e~~~~~~~~~~~-~-~~~l~~~a~~~g~~vvltG~GgDelf 234 (338)
+...+.+...+... .+|+ ++..+.. . ...+.+.|.+.|+..+.||+.+|...
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpn-pc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPN-PDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-chHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee
Confidence 43222222222221 2333 2222222 1 23455778889999999999998754
No 48
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.99 E-value=3.5e-09 Score=90.23 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=74.1
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCC--CchHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEG--SPDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~--~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~ 187 (338)
+++|++|||.||++++.++.+...... .+.++.++++. ... ..+..+++++|+.+|++++.+.++. ++ ..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKE-EY-TD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhh-hc-ch
Confidence 478999999999999999988643110 01256666654 332 2567899999999999999988763 22 00
Q ss_pred HHHHHHhhccCCccccCc-hHHHHHHHHHhhhCCCeEEEecCchhhccc
Q 019615 188 LEEVIYHIETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (338)
Q Consensus 188 l~~~~~~~e~~~~~~~~~-~~~~~~l~~~a~~~g~~vvltG~GgDelf~ 235 (338)
... .........+..+ ..-...+.+.|++.|++++++|+.+|++..
T Consensus 75 ~~~--~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~e 121 (185)
T cd01993 75 DIE--VKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAE 121 (185)
T ss_pred hhh--hhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHH
Confidence 000 0001111111111 223456677888899999999999998743
No 49
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=98.98 E-value=1.2e-09 Score=105.77 Aligned_cols=68 Identities=28% Similarity=0.449 Sum_probs=59.3
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCe
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGG 71 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 71 (338)
+|+|+|++++++. ++++++||++|+|||||.+. ++.++||||.++|... .+.++.|+||+++.++...
T Consensus 168 ~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g 236 (469)
T PRK05793 168 AIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDG 236 (469)
T ss_pred HhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCc
Confidence 4789999999985 68999999999999999986 6789999999999754 3678899999999887543
No 50
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=98.97 E-value=1.5e-09 Score=109.28 Aligned_cols=68 Identities=29% Similarity=0.576 Sum_probs=60.8
Q ss_pred CceeeEEEEEEECCC-CEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeE
Q 019615 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGL 72 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~-~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 72 (338)
+|+|+|||++||..+ ++++++||+ |||||... ++.++||||+++|......++.|+||+++.++...+
T Consensus 153 ~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~ 221 (604)
T PRK00331 153 RLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRRVIYLEDGEIAVLTRDGV 221 (604)
T ss_pred hccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeE
Confidence 589999999999886 899999996 99999985 678999999999999999999999999998864433
No 51
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.97 E-value=8.7e-10 Score=102.43 Aligned_cols=112 Identities=20% Similarity=0.172 Sum_probs=65.9
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCC-----------chHHHHHHHHHHhCCCceEEEeC
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-----------PDLKAAREVADYLGTRHHEFHFT 180 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-----------~e~~~A~~~a~~lg~~~~~v~~~ 180 (338)
+|.|++|||+|||+.|+++++.+ .++..+++...+. .|...|+++|++||++|+.+++.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G----------~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQG----------YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-----------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhhc----------ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 58999999999999999999875 4677777644321 35788999999999999999986
Q ss_pred hhHHHHH-HHHHH---HhhccCCccccCchHH--HHHHHHHhhh-CCCeEEEecCchhhccc
Q 019615 181 VQEGIDA-LEEVI---YHIETYDVTTIRASTP--MFLMSRKIKS-LGVKMVISGEGSDEIFG 235 (338)
Q Consensus 181 ~~~~~~~-l~~~~---~~~e~~~~~~~~~~~~--~~~l~~~a~~-~g~~vvltG~GgDelf~ 235 (338)
.+ +.+. +..++ ..-.+|++ ++.+.-. +-.+.+.|.+ .|+..+.||+.|--...
T Consensus 72 ~~-f~~~Vi~~f~~~Y~~G~TPNP-cv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~ 131 (356)
T PF03054_consen 72 EE-FWEEVIEPFLDEYRKGRTPNP-CVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD 131 (356)
T ss_dssp HH-HHHHTHHHHHHHHHTT----H-HHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE
T ss_pred HH-HHHHHHHHHHHHHhcCCCCCh-HHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee
Confidence 43 3222 22222 22245543 3322211 1246677877 89999999998865544
No 52
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.95 E-value=1.4e-09 Score=106.31 Aligned_cols=68 Identities=25% Similarity=0.311 Sum_probs=57.2
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEec---CCeEEEecccchhhhc-cCCcEEeCCCcEEEecC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL---DGSIWFASEMKALSDD-CERFISFPPGHIYSSKQ 69 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~ 69 (338)
+|+|+||++++.. .++++++||++|+|||||.... ++.++||||.++|... .+-|+.|+||+.+.++.
T Consensus 162 ~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~ 233 (501)
T PRK09246 162 RVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITE 233 (501)
T ss_pred hcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEEC
Confidence 4789999998843 4569999999999999999752 3479999999999875 46688999999998864
No 53
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.3e-09 Score=96.56 Aligned_cols=110 Identities=24% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--C--C-----CCchHHHHHHHHHHhCCCceEEEeC
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--L--E-----GSPDLKAAREVADYLGTRHHEFHFT 180 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~--~-----~~~e~~~A~~~a~~lg~~~~~v~~~ 180 (338)
..+|.+++|||+|||+.|+++++++ .++..+++. + . ...|...|+++|+.+|++|+.+++.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QG----------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~ 72 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQG----------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFE 72 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcC----------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchH
Confidence 3578999999999999999999876 356555542 2 1 1247789999999999999999886
Q ss_pred hhHHHHHH-HHHH--H-hhccCCccccCch-HHH-HHHHHHhhhCCCeEEEecCchh
Q 019615 181 VQEGIDAL-EEVI--Y-HIETYDVTTIRAS-TPM-FLMSRKIKSLGVKMVISGEGSD 231 (338)
Q Consensus 181 ~~~~~~~l-~~~~--~-~~e~~~~~~~~~~-~~~-~~l~~~a~~~g~~vvltG~GgD 231 (338)
. ++.+.+ ...+ | .-.+|++ ++.+. ... -.+.+.|.+.|++.+.||+-+-
T Consensus 73 ~-~y~~~V~~~f~~~Y~~G~TPNP-ci~CN~~iKF~~~l~~a~~lgad~iATGHYar 127 (356)
T COG0482 73 K-EFWNKVFEYFLAEYKAGKTPNP-CILCNKEIKFKALLDYAKELGADYIATGHYAR 127 (356)
T ss_pred H-HHHHHHHHHHHHHHhCCCCCCc-chhcCHHHHHHHHHHHHHHcCCCeEEEeeeEe
Confidence 4 344321 1111 1 1245543 55442 222 2455777889999999999653
No 54
>PTZ00323 NAD+ synthase; Provisional
Probab=98.94 E-value=1.5e-08 Score=92.01 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhhc--CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC-CCchHHHHHHHHHHhCCC
Q 019615 97 KAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPDLKAAREVADYLGTR 173 (338)
Q Consensus 97 ~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~e~~~A~~~a~~lg~~ 173 (338)
+...+.++.++.. ...+.+.||||+||+++++++.+....... ....+.++..... ...+...|+++|+.+|++
T Consensus 31 ~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~---~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~ 107 (294)
T PTZ00323 31 EKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNS---PIQKNVGLCQPIHSSAWALNRGRENIQACGAT 107 (294)
T ss_pred HHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccC---CceEEEEEECCCCCCHHHHHHHHHHHHHhCCc
Confidence 3334455555443 567999999999999999999987643100 0011333333322 235788999999999999
Q ss_pred ceEEEeChhHHHHHHHHHHHhhccCCc-----cc----cCchHHHHHHHHHhhhCCCeEEEecC-chhhc-ccCCcccc
Q 019615 174 HHEFHFTVQEGIDALEEVIYHIETYDV-----TT----IRASTPMFLMSRKIKSLGVKMVISGE-GSDEI-FGGYLYFH 241 (338)
Q Consensus 174 ~~~v~~~~~~~~~~l~~~~~~~e~~~~-----~~----~~~~~~~~~l~~~a~~~g~~vvltG~-GgDel-f~Gy~~~~ 241 (338)
|+++++++ ..+.+...+........ .. +++ ...|.+++.+.+.|...++.|- ..||. .-||....
T Consensus 108 ~~~idi~~--l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~-~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~Gy~t~~ 183 (294)
T PTZ00323 108 EVTVDQTE--IHTQLSSLVEKAVGIKGGAFARGQLRSYMRT-PVAFYVAQLLSQEGTPAVVMGTGNFDEDGYLGYFCKA 183 (294)
T ss_pred EEEEECcH--HHHHHHHHHhhhhcccchhhHHHhHHHHHHh-HHHHHHHHHHhhcCCCeEEECCCCchhhhHhchHhhc
Confidence 99998875 33333222221100000 00 111 2246677767677888888888 68885 35886543
No 55
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.94 E-value=3.6e-09 Score=98.93 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=74.2
Q ss_pred hcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCC----CchHHHHHHHHHHhCCCceEEEeChhH
Q 019615 108 MTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG----SPDLKAAREVADYLGTRHHEFHFTVQE 183 (338)
Q Consensus 108 ~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~----~~e~~~A~~~a~~lg~~~~~v~~~~~~ 183 (338)
.++.+|.+++|||+||++++.++++.+ .++.++++.... ..|...|+++|+++|++|+.++++. .
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G----------~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~-~ 71 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAG----------YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARK-V 71 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcC----------CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHH-H
Confidence 456789999999999999999998753 467777764321 2357889999999999999987653 2
Q ss_pred HHHHH-HHHH--Hh-hccCCccccCchH-H-HHHHHHHhhhCCCeEEEecCchh
Q 019615 184 GIDAL-EEVI--YH-IETYDVTTIRAST-P-MFLMSRKIKSLGVKMVISGEGSD 231 (338)
Q Consensus 184 ~~~~l-~~~~--~~-~e~~~~~~~~~~~-~-~~~l~~~a~~~g~~vvltG~GgD 231 (338)
+...+ ...+ +. ..+|+ +++.+.. . +-.+.+.|.+.|++.++||+.+.
T Consensus 72 f~~~v~~~f~~~y~~g~tpn-pC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 72 FRKQIIDYFIDEYMSGHTPV-PCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHhhhhhHHhccCCCC-HHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 22222 1111 11 12232 1222222 1 12456778889999999999985
No 56
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.93 E-value=3.5e-09 Score=94.00 Aligned_cols=136 Identities=22% Similarity=0.234 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHHh
Q 019615 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYL 170 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~l 170 (338)
+.+.+.|++-+++. ....+.+.||||+||+++|+++.+.+.. .++.++.+... ...+...|+++|+.+
T Consensus 3 ~~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~Alg~--------~~v~~v~mp~~~~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKALGP--------DNVLAVIMPSGFSSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHHHGG--------GEEEEEEEESSTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHHhhh--------ccccccccccccCChHHHHHHHHHHHHh
Confidence 44555566666542 3367899999999999999999998743 35777777422 234678899999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhc-cCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccc
Q 019615 171 GTRHHEFHFTVQEGIDALEEVIYHIE-TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 241 (338)
Q Consensus 171 g~~~~~v~~~~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~ 241 (338)
|+++.++++++ ..+.+.+.+.... ......+...+-+-.+...|...+. +++....-+|...||....
T Consensus 73 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~-lVlgT~N~sE~~~Gy~T~~ 141 (242)
T PF02540_consen 73 GIEYIVIDIDP--IFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNY-LVLGTGNKSELLLGYFTKY 141 (242)
T ss_dssp TSEEEEEESHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTE-EEBE--CHHHHHHTCSHTT
T ss_pred CCCeeccchHH--HHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccce-EEecCCcHHHhhcCccccc
Confidence 99999998764 3333332221111 0000011111112222333444454 4444444788888987543
No 57
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.92 E-value=6.6e-09 Score=97.54 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=74.1
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHHhCC-CceEEEeChhHHHH
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGT-RHHEFHFTVQEGID 186 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~lg~-~~~~v~~~~~~~~~ 186 (338)
..++.+++|||+|||++++++.+.+ .++.++++... ...|...|+++|+.+|+ +|+++++..+..-+
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~G----------~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~ 71 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQERG----------YAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEG 71 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHcC----------CcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHH
Confidence 3579999999999999999988743 46788877543 35789999999999998 59988876533222
Q ss_pred HHHHHH-----HhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCc
Q 019615 187 ALEEVI-----YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (338)
Q Consensus 187 ~l~~~~-----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~G 229 (338)
.+...+ +.-.+|...+.+ .+-.-.+.+.|++.|++++.+|..
T Consensus 72 vi~p~i~aNa~y~G~yPl~~~nR-~~~~~~l~e~A~~~G~~~IA~G~t 118 (400)
T PRK04527 72 FVKPLVWAGEGYQGQYPLLVSDR-YLIVDAALKRAEELGTRIIAHGCT 118 (400)
T ss_pred HHHHHHhcchhhcCCCCCccccH-HHHHHHHHHHHHHCCCCEEEecCc
Confidence 333223 211234322111 111224567788899999999995
No 58
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=98.89 E-value=3.7e-09 Score=106.47 Aligned_cols=67 Identities=31% Similarity=0.555 Sum_probs=59.3
Q ss_pred CceeeEEEEEEECCC-CEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCe
Q 019615 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGG 71 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~-~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~ 71 (338)
+|+|+|||++||... ++++++||+ |||||... ++.++||||+++|......+..|+||+++.++++.
T Consensus 152 ~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~ 219 (607)
T TIGR01135 152 QLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRRVIYLEDGDIAILTRDG 219 (607)
T ss_pred HhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCe
Confidence 589999999999876 469999995 99999985 77899999999999988899999999999886543
No 59
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.88 E-value=1.4e-08 Score=93.20 Aligned_cols=116 Identities=20% Similarity=0.256 Sum_probs=72.8
Q ss_pred HHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCCCchHHHHHHHH-HHhCCCceEEEe
Q 019615 103 VVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVA-DYLGTRHHEFHF 179 (338)
Q Consensus 103 v~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~~a-~~lg~~~~~v~~ 179 (338)
+++.+. +.++.+++|||+||+++++++.+... .++.++++. +....|...+.+.+ +++|++|+.++.
T Consensus 10 l~~~v~-~~kVvValSGGVDSsvla~ll~~~~G---------~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~ 79 (311)
T TIGR00884 10 IREQVG-DAKVIIALSGGVDSSVAAVLAHRAIG---------DRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDA 79 (311)
T ss_pred HHHHhC-CCcEEEEecCChHHHHHHHHHHHHhC---------CCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeC
Confidence 334443 36899999999999999999987652 467777764 43345777776654 589999999887
Q ss_pred ChhHHHHHHHHHHHhhccCCccc-cCchHHHHHHHHHhhhCC-CeEEEecCchhhc
Q 019615 180 TVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 233 (338)
Q Consensus 180 ~~~~~~~~l~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~g-~~vvltG~GgDel 233 (338)
+. .+++.+.. ...|.... +........+.+.|++.| ++.+++|...|.+
T Consensus 80 ~e-~fl~~l~~----v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 80 KE-RFLSALKG----VTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred cH-HHHhhhcC----CCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 63 23333221 11111000 000111223556677788 9999999998754
No 60
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.86 E-value=1.4e-08 Score=95.65 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=72.6
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCC-ceEEEeChhHHHH-HH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTR-HHEFHFTVQEGID-AL 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~-~~~v~~~~~~~~~-~l 188 (338)
.++++++|||+||++++.++.+.. |.++.++++......|.+.|+++|+.+|+. |+++++. +++.+ .+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l---------G~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~-~ef~~~~i 72 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY---------GCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLR-EEFVRDYV 72 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh---------CCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCH-HHHHHHhH
Confidence 468999999999999999998753 246888888665557899999999999985 5554554 23332 22
Q ss_pred HHHHH-----hhccCCccccCchHHHHHHHHHhhhCCCeEEEecCch
Q 019615 189 EEVIY-----HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 189 ~~~~~-----~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
...+. ....|.+..+......-.+.+.|++.|++++.+|..+
T Consensus 73 ~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 73 FPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 22222 2233432111111112245577888999999999876
No 61
>PRK00919 GMP synthase subunit B; Validated
Probab=98.85 E-value=2.1e-08 Score=91.59 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCCCchHHHHHHHHHHhCCCc
Q 019615 97 KAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRH 174 (338)
Q Consensus 97 ~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~~a~~lg~~~ 174 (338)
+...+.++..+.. .++.+++|||+||+++++++.+.. |.++.++++. +....|.+.++++|+.+ ++|
T Consensus 9 ~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~l---------G~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~ 77 (307)
T PRK00919 9 EEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAI---------GDRLTPVFVDTGLMRKGETERIKETFSDM-LNL 77 (307)
T ss_pred HHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHh---------CCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCc
Confidence 3333445555554 789999999999999999998864 2457777764 33346889999999888 888
Q ss_pred eEEEeChhHHHHHHHHHHHhhccCCccccCc-hHHHHHHHHHhhhCCCeEEEecCchhhc
Q 019615 175 HEFHFTVQEGIDALEEVIYHIETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 175 ~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~-~~~~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
+.+..+. .+++.+... ..|......+ ......+.+.|++.|++.+++|...|.+
T Consensus 78 ~vvd~~e-~fl~~L~~v----~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~ 132 (307)
T PRK00919 78 RIVDAKD-RFLDALKGV----TDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDW 132 (307)
T ss_pred EEEECCH-HHHHhccCC----CChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 8887653 233333221 1111100000 1112245566778899999999988765
No 62
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.84 E-value=3.8e-08 Score=87.92 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=78.7
Q ss_pred HHHHHHHHhhh--cCCceEEEecCcccHHHHHHHHHHHhchhhhhh-hcCCCcceeeccCCCCchHHHHHHHHHHhCC-C
Q 019615 98 AFEKAVVKRLM--TDVPFGVLLSGGLDSSLVAAVASRYLADSEAAC-QWGSQLHSFCIGLEGSPDLKAAREVADYLGT-R 173 (338)
Q Consensus 98 ~l~~av~~rl~--~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~-~ 173 (338)
.+.+.++.++. ....+.+.||||+||+++++++.+.....+..+ .....+.++...+....+...|+.+|+.+|+ +
T Consensus 24 ~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~ 103 (268)
T PRK00768 24 RRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDR 103 (268)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCe
Confidence 33344444443 235688999999999999999988764321000 0001133444433334567889999999999 7
Q ss_pred ceEEEeChhHHHHHHHHHHHhhcc-CCc---cccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCccccc
Q 019615 174 HHEFHFTVQEGIDALEEVIYHIET-YDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHK 242 (338)
Q Consensus 174 ~~~v~~~~~~~~~~l~~~~~~~e~-~~~---~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~ 242 (338)
+.++++++ ..+.+.+.+...+. ... ..+.+.+-+-.++..|...|.-|+=||+ -+|+.-||.....
T Consensus 104 ~~~i~I~~--~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N-~sE~~~Gy~TkyG 173 (268)
T PRK00768 104 VLTVNIKP--AVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDH-AAEAVTGFFTKFG 173 (268)
T ss_pred eEEEECHH--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCc-ccHHHhCceeccC
Confidence 88888764 44444333321000 000 0111112223344455666765555555 6788899976443
No 63
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.83 E-value=3.6e-08 Score=92.15 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=74.8
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhH---HHH
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQE---GID 186 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~---~~~ 186 (338)
..+|.+++|||+||+++++++++.+ .++.++++... ..|...|+++|+++|++|+.++++.+- +++
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~eV~av~~~~~-~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~ 73 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQG----------YEIVGVTMRVW-GDEPQDARELAARMGIEHYVADERVPFKDTIVK 73 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHcC----------CcEEEEEecCc-chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHH
Confidence 4579999999999999999887643 46777777543 245667999999999999999877431 122
Q ss_pred HHHHHHHhhccCCccccCchH-H-HHHHHHHhhhCCCeEEEecCchhh
Q 019615 187 ALEEVIYHIETYDVTTIRAST-P-MFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 187 ~l~~~~~~~e~~~~~~~~~~~-~-~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
.+.+....-.+|+ ++..+.. . ...+.+.|.+.|+..+.||+.++-
T Consensus 74 ~~~~~~~~G~tpn-pC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 74 NFIDEYRQGRTPN-PCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred HhHHHHHcCCCCC-CchhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 1111111112333 2333331 1 234677788899999999999963
No 64
>PRK13981 NAD synthetase; Provisional
Probab=98.82 E-value=4e-08 Score=97.63 Aligned_cols=139 Identities=21% Similarity=0.240 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHhhhc--CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCC--chHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVA 167 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~e~~~A~~~a 167 (338)
.+++.+.+...++.++.. ...+.+.||||+||+++++++.+.+.. .++.++++....+ .+...|+++|
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--------~~v~~~~~p~~~~~~~~~~~a~~~a 331 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--------ERVRAVMMPSRYTSEESLDDAAALA 331 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--------CcEEEEECCCCCCCHHHHHHHHHHH
Confidence 456666666666666643 367899999999999999999887632 3588888765433 4678899999
Q ss_pred HHhCCCceEEEeChhHHHHHHHHHHHhh---ccCCcc--ccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccc
Q 019615 168 DYLGTRHHEFHFTVQEGIDALEEVIYHI---ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 241 (338)
Q Consensus 168 ~~lg~~~~~v~~~~~~~~~~l~~~~~~~---e~~~~~--~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~ 241 (338)
+.+|++|+++++++ ..+.+...+... +.++.. .+.+.+-+..+...|.+.|.-|+=||+ -+|+.-||....
T Consensus 332 ~~lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n-~sE~~~Gy~t~~ 407 (540)
T PRK13981 332 KNLGVRYDIIPIEP--AFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGN-KSEMAVGYATLY 407 (540)
T ss_pred HHcCCeEEEEECHH--HHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCc-cCHHHcCCeEec
Confidence 99999999998764 333333322211 111110 111112223344556667766666666 568889997644
No 65
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.82 E-value=2.8e-08 Score=93.06 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=71.6
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccC-------C-----CCchHHHHHHHHHHhCCCceEEEe
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL-------E-----GSPDLKAAREVADYLGTRHHEFHF 179 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~-------~-----~~~e~~~A~~~a~~lg~~~~~v~~ 179 (338)
++.+++|||+||+++++++.+.+ .++.++++.. . ...|.+.|+++|+++|++++++++
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 58899999999999999998854 4577777621 1 123678899999999999999887
Q ss_pred ChhHHHHH-HHHHHH---hhccCCccccCchHH--HHHHHHHhhhC-CCeEEEecCch
Q 019615 180 TVQEGIDA-LEEVIY---HIETYDVTTIRASTP--MFLMSRKIKSL-GVKMVISGEGS 230 (338)
Q Consensus 180 ~~~~~~~~-l~~~~~---~~e~~~~~~~~~~~~--~~~l~~~a~~~-g~~vvltG~Gg 230 (338)
..+ +.+. +...+. .-.+|+ +++.+... +..+.+.|.+. |+..+.||+.+
T Consensus 72 ~~~-f~~~v~~~~~~~y~~g~tpn-pC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 72 QKE-YWNKVFEPFIQEYKEGRTPN-PDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHH-HHHHHHHHHHHHHHcCCCCC-cchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 643 3222 111211 112333 33333222 23456777776 99999999999
No 66
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.77 E-value=4.8e-08 Score=82.83 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=63.6
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCc----hHHHHHHHHHHhCCCceEEEeChhHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSP----DLKAAREVADYLGTRHHEFHFTVQEGI 185 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~----e~~~A~~~a~~lg~~~~~v~~~~~~~~ 185 (338)
++.++||||+||++++.++.+.+ .++.++++ ++.... +...+.+.+..++.+|....++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g----------~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRG----------IEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcC----------CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH-
Confidence 47899999999999999998753 35666665 443332 23444445566787776544443321
Q ss_pred HHHHHHHHhhccCCccccCchHHH-HHHHHHhhhCCCeEEEecCchhh
Q 019615 186 DALEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 186 ~~l~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~vvltG~GgDe 232 (338)
...+.... ..+..++..+...+ ..+.+.|.+.|++++++|+.+|+
T Consensus 70 -~~~~~~~~-~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 70 -VQKEIYGY-GKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred -HHHHHHHh-CCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCccc
Confidence 11111111 22222232222222 34556778899999999998776
No 67
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.76 E-value=2.5e-08 Score=86.29 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=92.0
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~ 190 (338)
+.++||||+||++++.++.+.. .++.++++.+. ...|.+.++++|+.+|+++++++++.- ..+..
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~g----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~---~~~~~ 67 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDEG----------YEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLL---KQLGG 67 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHcC----------CcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhh---ccccc
Confidence 3689999999999999987753 46777877543 345788999999999999999887631 11000
Q ss_pred -HHHhhc-cCC----------cccc--CchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccccCCChhHHHHHHHHH
Q 019615 191 -VIYHIE-TYD----------VTTI--RASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRK 256 (338)
Q Consensus 191 -~~~~~e-~~~----------~~~~--~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~ 256 (338)
...... .+. ...+ ++.+..-.+...|.+.|+..|++|...|++ +.|+.. +..|.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~-~~~~d~-----~~~f~~~~--- 138 (201)
T TIGR00364 68 SALTDESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDF-SGYPDC-----RDEFVKAF--- 138 (201)
T ss_pred ccccCCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcC-CCCCCC-----cHHHHHHH---
Confidence 000000 000 0001 111212335577888999999999999885 666531 12333332
Q ss_pred HHhcccccccchhhhhhhcCccccCCCCC---HHHHHHHhcCC
Q 019615 257 IKALHLYDCLRANKSTSAWGVEARVPFLD---KEFINTAMSID 296 (338)
Q Consensus 257 ~~~l~~~~l~r~d~~~~~~gve~r~PflD---~~lve~~~~lP 296 (338)
+.+.. .....++.+..||++ .++++.+..+-
T Consensus 139 -~~~~~--------~~~~~~~~i~~Pl~~~~K~eI~~la~~~g 172 (201)
T TIGR00364 139 -NHALN--------LGMLTPVKIRAPLMDLTKAEIVQLADELG 172 (201)
T ss_pred -HHHHH--------hhcCCCeEEEECCcCCCHHHHHHHHHHcC
Confidence 22211 113456788999976 35666665443
No 68
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.76 E-value=1.8e-08 Score=101.96 Aligned_cols=71 Identities=30% Similarity=0.509 Sum_probs=62.0
Q ss_pred CceeeEEEEEEECC-CCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEEe
Q 019615 1 MLDGMFSFVLLDTR-DKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRW 75 (338)
Q Consensus 1 ~l~G~fa~~i~D~~-~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~ 75 (338)
+|+|+|||++||.. .++++++||+ +||||... ++.++||||.++|......+..|+||+++.++++.++.|
T Consensus 183 ~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~~~~~~ 254 (640)
T PTZ00295 183 RLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYISLKDGEIAELSLENVNDL 254 (640)
T ss_pred HhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEEeCCCeEEEEECCeEEEE
Confidence 48999999999976 5899999997 99999985 678999999999998888888999999998876655544
No 69
>PRK08349 hypothetical protein; Validated
Probab=98.75 E-value=6e-08 Score=83.76 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=64.8
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHh----CCCce-EEEeChhHH-H
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYL----GTRHH-EFHFTVQEG-I 185 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~l----g~~~~-~v~~~~~~~-~ 185 (338)
++.+++|||+||++++.++.+.+ .++.++++.. +..+...++++|+++ |++|+ .+.++..+. .
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g----------~~v~av~~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRG----------VEVYPVHFRQ-DEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcC----------CeEEEEEEeC-CHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 47899999999999999887653 4677777655 335566677777666 47774 233332221 1
Q ss_pred HHHHHHHHhhccCCccccCchHHH-HHHHHHhhhCCCeEEEecCchhhc
Q 019615 186 DALEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 186 ~~l~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~vvltG~GgDel 233 (338)
..+..+.. ......+++.+...+ ..+.+.|.+.|+..++||+..|+.
T Consensus 71 ~~~~~~~~-~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~ 118 (198)
T PRK08349 71 PVFEKLRE-LKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQV 118 (198)
T ss_pred HHHHHHHh-hCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchH
Confidence 11222111 111111222222222 345577788999999999866553
No 70
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.75 E-value=9.3e-08 Score=81.86 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=69.9
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCC--CchHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEG--SPDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~--~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~ 187 (338)
++.+++|||.||++++.++.+..... +.++.++++. +.. ..+.+.++++|+.+|++++.+.++..+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccc
Confidence 47899999999999999998754221 2356666654 332 2367889999999999999988764321100
Q ss_pred HHHHHHhhccCCccccCch-HHHHHHHHHhhhCCCeEEEecCchhhc
Q 019615 188 LEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 188 l~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
....+.. .+. .-...+.+.+++.|++++++|+.+|++
T Consensus 75 ------~~~~~~~---~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~ 112 (189)
T TIGR02432 75 ------KKKNLEE---AAREARYDFFEEIAKKHGADYILTAHHADDQ 112 (189)
T ss_pred ------cCCCHHH---HHHHHHHHHHHHHHHHcCCCEEEEcCccHHH
Confidence 0000000 001 112345567788999999999998875
No 71
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=98.74 E-value=8.4e-08 Score=86.29 Aligned_cols=131 Identities=21% Similarity=0.158 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHh--hhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHH
Q 019615 93 LVLRKAFEKAVVKR--LMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVAD 168 (338)
Q Consensus 93 ~~l~~~l~~av~~r--l~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~ 168 (338)
+.+.+.+.+++++. +....++.|++|||.||++++.++.+...... .+.++.++++ |+.+ .+.+.++++|+
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----~~~~l~av~vd~g~~~-~~~~~~~~~~~ 84 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----INFELVAVNLDQKQPG-FPEHVLPEYLE 84 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----CCeEEEEEEecCCCCC-CCHHHHHHHHH
Confidence 45666777777763 23456899999999999999999977532110 0124566665 3333 24456789999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCch-HHHHHHHHHhhhCCCeEEEecCchhhcc
Q 019615 169 YLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (338)
Q Consensus 169 ~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~vvltG~GgDelf 234 (338)
.+|++++++.++...+. ..... ... .++..+. .-...+.+.|.+.|+.+|++|+.+|+..
T Consensus 85 ~lgI~~~v~~~~~~~~~---~~~~~--~~~-~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 85 SLGVPYHIEEQDTYSIV---KEKIP--EGK-TTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred HhCCCEEEEEecchhhh---hhhhc--cCC-ChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 99999998876532211 11110 000 0010011 1123566778889999999999999753
No 72
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.71 E-value=8.2e-08 Score=90.45 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=71.8
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCC-CcceeeccCCC-CchHHHHHHHHHHhCCCceEEEeChhHHH-HH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGS-QLHSFCIGLEG-SPDLKAAREVADYLGTRHHEFHFTVQEGI-DA 187 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~-~~~~~t~~~~~-~~e~~~A~~~a~~lg~~~~~v~~~~~~~~-~~ 187 (338)
.+|++++|||+||++++.++.+.. |. ++.++++.... ..|.+.++++|+.+|++++++++.. ++. +.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~---------g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~e-ef~~~~ 72 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY---------GYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKE-EFAKDY 72 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc---------CCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHH-HHHHHH
Confidence 468999999999999999987753 22 57777765432 3578889999999999999987653 343 22
Q ss_pred HHHHHHhh----ccCCccccCchHHH-HHHHHHhhhCCCeEEEecCchh
Q 019615 188 LEEVIYHI----ETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSD 231 (338)
Q Consensus 188 l~~~~~~~----e~~~~~~~~~~~~~-~~l~~~a~~~g~~vvltG~GgD 231 (338)
+...+... ..|.. +..+.... -.+.+.|++.|+++|.+|..++
T Consensus 73 i~~~i~~n~~~~gYpl~-~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 73 IFPAIKANALYEGYPLG-TALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHhCccccCCcCc-HHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 22333221 11211 10011111 2355678889999999999654
No 73
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.68 E-value=1.5e-07 Score=88.64 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=67.3
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCC-chHHHHHHHHHHhCCC-ceEEEeChhHHHH-HHH
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADYLGTR-HHEFHFTVQEGID-ALE 189 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~e~~~A~~~a~~lg~~-~~~v~~~~~~~~~-~l~ 189 (338)
|++++|||+||++++.++.+... .++.++++..... ++.+.+++.|+.+|++ |+++.+.. ++.+ .+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~---------~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~-ef~~~~i~ 70 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGG---------YEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLRE-EFVEDYIF 70 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCC---------CeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHH-HHHHHhhH
Confidence 57899999999999999987642 3678888755433 3348899999999996 67666543 3432 222
Q ss_pred HHHHhhcc----CCccccCch-HHHHHHHHHhhhCCCeEEEecCch
Q 019615 190 EVIYHIET----YDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 190 ~~~~~~e~----~~~~~~~~~-~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
..+..... +.+++.-+. ...-.+.+.|++.|++++.+|..+
T Consensus 71 ~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 71 PAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 22322111 111110001 111234577888999999888765
No 74
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.67 E-value=8.2e-08 Score=87.46 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=70.7
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCCCchHHHHHHHHHHhCC-CceEEEeChhHHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGT-RHHEFHFTVQEGIDAL 188 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~~a~~lg~-~~~~v~~~~~~~~~~l 188 (338)
++.+++|||+||+++++++.+... .++.++++. +....|...++++|+.++. +|+.++.+. .+++.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG---------~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e-~fl~~l 70 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIG---------DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASE-RFLSAL 70 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhC---------CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcH-HHHHHh
Confidence 478999999999999999988642 457777764 3234688899999998886 998887653 233322
Q ss_pred HHHHHhhccCCccc-cCchHHHHHHHHHhhhCC-CeEEEecCchhhc
Q 019615 189 EEVIYHIETYDVTT-IRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 233 (338)
Q Consensus 189 ~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~g-~~vvltG~GgDel 233 (338)
.. ...|.... +....-...+.+.|++.| ++.+++|+.+|.+
T Consensus 71 ~~----v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~ 113 (295)
T cd01997 71 KG----VTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDV 113 (295)
T ss_pred cC----CCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccch
Confidence 11 11111000 000111224556778889 9999999998875
No 75
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.64 E-value=2.4e-07 Score=91.03 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCCCchHHHHHH-HHHHh
Q 019615 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAARE-VADYL 170 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~-~a~~l 170 (338)
.+.+...+.+++.+. +.++.+++|||+||+++++++.+... .++.++++. +....|...+.+ +|+.+
T Consensus 200 ~~~~~~~~~l~~~v~-~~~vlva~SGGvDS~vll~ll~~~lg---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 269 (511)
T PRK00074 200 NFIEEAIEEIREQVG-DKKVILGLSGGVDSSVAAVLLHKAIG---------DQLTCVFVDHGLLRKNEAEQVMEMFREHF 269 (511)
T ss_pred HHHHHHHHHHHHhcC-CCcEEEEeCCCccHHHHHHHHHHHhC---------CceEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 344444455555554 47899999999999999999988752 457777664 322356666765 67999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCccc-cCchHHHHHHHHHhhhC-CCeEEEecCchhhc
Q 019615 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 233 (338)
Q Consensus 171 g~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~-g~~vvltG~GgDel 233 (338)
|++++.++++. .+.+.+... ..+.... +........+.+.|++. |++.+++|+..|.+
T Consensus 270 gi~~~vvd~~~-~f~~~l~g~----~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~ 329 (511)
T PRK00074 270 GLNLIHVDASD-RFLSALAGV----TDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDV 329 (511)
T ss_pred CCcEEEEccHH-HHHHhccCC----CCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchh
Confidence 99999987653 233322111 1111000 00111123455677787 99999999987765
No 76
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.64 E-value=2e-07 Score=88.09 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=69.6
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCC-chHHHHHHHHHHhCCCceEEEeChhHHHHH-H
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADYLGTRHHEFHFTVQEGIDA-L 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~-l 188 (338)
.++++++|||+||++++.++.+.. |.++.++++..... .|...++++|+.+|++++++.--.+++.+. +
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---------G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i 76 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---------GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYI 76 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---------CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhc
Confidence 479999999999999999997753 24688888755433 588999999999999875543222344322 2
Q ss_pred HHHHHhhcc-----CCccccCchHH--HHHHHHHhhhCCCeEEEecCch
Q 019615 189 EEVIYHIET-----YDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 189 ~~~~~~~e~-----~~~~~~~~~~~--~~~l~~~a~~~g~~vvltG~Gg 230 (338)
...+..... |.... .+-| .-.+.+.|++.|++++.+|..|
T Consensus 77 ~p~i~~Na~ye~~Y~~~ts--l~Rp~i~~~lv~~A~~~G~~~VahG~tg 123 (404)
T PLN00200 77 FPCLRANAIYEGKYLLGTS--MARPLIAKAMVDIAKEVGADAVAHGATG 123 (404)
T ss_pred CHHHHcCCcccceeccccc--hhhHHHHHHHHHHHHHcCCCEEEeCCcC
Confidence 222221111 11110 0111 2245677888999999888765
No 77
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=1.9e-07 Score=85.86 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCC--CchHHHHHHHHHHh
Q 019615 95 LRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEG--SPDLKAAREVADYL 170 (338)
Q Consensus 95 l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~--~~e~~~A~~~a~~l 170 (338)
+...+.+.++....-+..+.|++|||.||++++.++.+.... ..+.++++ ++.. ..+...++.+|+.+
T Consensus 6 ~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~--------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 6 LERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR--------IEVEAVHVDHGLRGYSDQEAELVEKLCEKL 77 (298)
T ss_pred HHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccC--------ceEEEEEecCCCCCccchHHHHHHHHHHHh
Confidence 444444444442111568999999999999999999987531 14445554 5543 35678899999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCccccCch-HHHHHHHHHhhhCCCeEEEecCchhhc
Q 019615 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 171 g~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
|+++.+..++........+ -..+. ..+. .-..++.+.|.+.|+++++||+.+|+.
T Consensus 78 ~~~~~v~~~~~~~~~~~~~-----~~~~c---~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~ 133 (298)
T COG0037 78 GIPLIVERVTDDLGRETLD-----GKSIC---AACRRLRRGLLYKIAKELGADKIATGHHLDDQ 133 (298)
T ss_pred CCceEEEEEEeeccccccC-----CCChh---HHHHHHHHHHHHHHHHHcCCCeEEeccCcHHH
Confidence 9988888776432211111 00011 0112 223467788899999999999999975
No 78
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.61 E-value=2.3e-07 Score=71.37 Aligned_cols=76 Identities=28% Similarity=0.316 Sum_probs=55.3
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHH
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVI 192 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~ 192 (338)
+++++|||+||++++.++.+.. .++.++++.....+|...+++.|+.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----------YQVIAVTVDHGISPRLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----------CCEEEEEEcCCCcccHHHHHHHHHH-----------------------
Confidence 5789999999999999998764 3567776654433466667776666
Q ss_pred HhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhccc
Q 019615 193 YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (338)
Q Consensus 193 ~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~ 235 (338)
.....+.+.+++.|++++++|+..|++..
T Consensus 48 --------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~ 76 (103)
T cd01986 48 --------------AREEAAKRIAKEKGAETIATGTRRDDVAN 76 (103)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCcchHHH
Confidence 11223456677889999999999998654
No 79
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.60 E-value=2.1e-07 Score=88.71 Aligned_cols=109 Identities=16% Similarity=0.214 Sum_probs=69.1
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec---cCCCCchHHHHHHHHHHhC-----CCceEEEeCh
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI---GLEGSPDLKAAREVADYLG-----TRHHEFHFTV 181 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~---~~~~~~e~~~A~~~a~~lg-----~~~~~v~~~~ 181 (338)
++++.++||||+||++++.++.+.+ .++.++++ .+....+...++++|+.++ ++|+.++++.
T Consensus 176 ~gkvvvllSGGiDS~vaa~l~~k~G----------~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~ 245 (394)
T PRK01565 176 SGKALLLLSGGIDSPVAGYLAMKRG----------VEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTE 245 (394)
T ss_pred CCCEEEEECCChhHHHHHHHHHHCC----------CEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECHH
Confidence 4578899999999999999987753 35555555 2333346677888888884 8888888764
Q ss_pred hHHHHHHHHHHHhhccCCccccCchHHHH-HHHHHhhhCCCeEEEecCchhhcc
Q 019615 182 QEGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIF 234 (338)
Q Consensus 182 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvltG~GgDelf 234 (338)
. .+.+.. ... ....++.+...++ .+.+.|.+.|+.+++||+..|++.
T Consensus 246 ~--~~~i~~---~~~-~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~ 293 (394)
T PRK01565 246 I--QEEIKK---KVP-ESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVA 293 (394)
T ss_pred H--HHHHhh---cCC-CceEEEeHHHHHHHHHHHHHHHcCCCEEEEcccccccc
Confidence 2 122211 110 0011111222233 345667889999999999987764
No 80
>PLN02347 GMP synthetase
Probab=98.59 E-value=2.6e-07 Score=90.75 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=76.2
Q ss_pred HHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCCCchHHHH-HHHHHHhCCCceEE
Q 019615 101 KAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAA-REVADYLGTRHHEF 177 (338)
Q Consensus 101 ~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A-~~~a~~lg~~~~~v 177 (338)
+.++..+..+.++.++||||+||+++|+++.+... .++.++++. +....|...+ +.+|+++|++++.+
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG---------~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vv 290 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAIG---------DRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCV 290 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhC---------CcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEE
Confidence 44455566678899999999999999999998653 468888775 3334466555 77999999999999
Q ss_pred EeChhHHHHHHHHHHHhhccCCccccCch-HHHH-HHH-HHhhhCCC--eEEEecCchhhcc
Q 019615 178 HFTVQEGIDALEEVIYHIETYDVTTIRAS-TPMF-LMS-RKIKSLGV--KMVISGEGSDEIF 234 (338)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-~~~~-~l~-~~a~~~g~--~vvltG~GgDelf 234 (338)
+.+. .+++.++.+. ..+.-.. .+... +..+ .+. +.+.+.|. +.++.|.-.|.+.
T Consensus 291 d~~e-~fl~~l~~~~-~pe~k~~-~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~ 349 (536)
T PLN02347 291 DASE-RFLSKLKGVT-DPEKKRK-IIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVI 349 (536)
T ss_pred eCcH-HHHhhCCCCC-ChHHhcc-hhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccc
Confidence 8774 4555443322 1110000 01010 1111 122 22223344 8999999888776
No 81
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.59 E-value=2.4e-07 Score=87.62 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=68.9
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCC-CchHHHHHHHHHHhCC-CceEEEeChhHHHHH--
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG-SPDLKAAREVADYLGT-RHHEFHFTVQEGIDA-- 187 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~e~~~A~~~a~~lg~-~~~~v~~~~~~~~~~-- 187 (338)
++++++|||+||++++.++.+.+ .++.++++.... ..|...+++.|+.+|+ +|+++++.. ++.+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g----------~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~-ef~~~~~ 69 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKG----------YEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDARE-EFVKDYG 69 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC----------CEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHH-HHHHhhc
Confidence 47899999999999999998752 467788765432 4588899999999997 788877653 34332
Q ss_pred HHHHH----HhhccCCccccCchHHH----HHHHHHhhhCCCeEEEecCch
Q 019615 188 LEEVI----YHIETYDVTTIRASTPM----FLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 188 l~~~~----~~~e~~~~~~~~~~~~~----~~l~~~a~~~g~~vvltG~Gg 230 (338)
++.+. +.+..|.. .++.. -.+.+.|++.|++++++|.-+
T Consensus 70 ~~~i~~n~~y~~~Y~l~----t~laR~li~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 70 FAAIQANAFYEGTYPLS----TALARPLIAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred hhhhcCCccccCccccc----chhhHHHHHHHHHHHHHHcCCCEEEECccC
Confidence 22221 11111211 11221 135566888999999999844
No 82
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=98.58 E-value=2.2e-07 Score=79.16 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=61.5
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCC--chHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGS--PDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~--~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~ 187 (338)
+++|++|||.||++++.++.+..... +.++.++++ ++... .|....++.|+.+|++++...++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~---- 70 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDR---- 70 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHC----
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeee----
Confidence 47899999999999999998875432 234555554 44432 35678999999999999998876400
Q ss_pred HHHHHHhhccCCccccCchHHH-HHHHHHhhhCCCeEEEecCchhhc
Q 019615 188 LEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 188 l~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~vvltG~GgDel 233 (338)
.....+. ..+.... .++.+.|.+.|+.++++|+-.|+.
T Consensus 71 -----~~~~~~e---~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 71 -----KKGSNIE---ECARELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp -----CTTSTCH---HHHHHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred -----cccCCHH---HHHHHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 0000000 0011112 256678889999999999999874
No 83
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.57 E-value=5.4e-07 Score=76.76 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=67.6
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CC--chHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GS--PDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~--~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~ 187 (338)
++.+++|||.||++++.++.+..... +.++.++++... .. .+...++++|+.+|++++.+......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 70 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAP---- 70 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecccc----
Confidence 47899999999999999998875321 135677776433 22 46889999999999999887211000
Q ss_pred HHHHHHhhccCCccccCchHH-HHHHHHHhhhCCCeEEEecCchhhc
Q 019615 188 LEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 188 l~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
...... ...+... ...+.+.|.+.|++.+++|+-+|++
T Consensus 71 -------~~~~~~-~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 71 -------KPGGNL-EAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred -------CCCCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 000000 0001111 2345677888999999999998875
No 84
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.54 E-value=9.8e-07 Score=89.77 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhhhc--CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCC--chHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVA 167 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~e~~~A~~~a 167 (338)
.+++.+.+...++.+++. ...+.+.||||+||+++++++.+....-.. -..++.++++...++ .....|+++|
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~---~~~~v~~v~mp~~~ss~~s~~~a~~la 417 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGL---PRKNILAYTMPGFATTDRTKNNAVALM 417 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCC---CcceEEEEECCCCCCCHHHHHHHHHHH
Confidence 355666666667776643 467999999999999999998887421000 003677777742233 3468899999
Q ss_pred HHhCCCceEEEeChhHHHHHHHHHHHhh-c---cCCcc---ccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCccc
Q 019615 168 DYLGTRHHEFHFTVQEGIDALEEVIYHI-E---TYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (338)
Q Consensus 168 ~~lg~~~~~v~~~~~~~~~~l~~~~~~~-e---~~~~~---~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~ 240 (338)
+.+|++|+++++.+ .++...+.+... . ..+.. .+.+.+-+..+...|.+.|..|+-||+ -+|++-||..+
T Consensus 418 ~~LGi~~~~i~I~~--~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn-~sE~~~Gy~T~ 494 (679)
T PRK02628 418 KALGVTAREIDIRP--AALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGD-LSELALGWCTY 494 (679)
T ss_pred HHhCCeEEEEEcHH--HHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCc-hhhHHhCceec
Confidence 99999999998853 333222222110 0 00100 111122345566778888999999995 67888999876
Q ss_pred c
Q 019615 241 H 241 (338)
Q Consensus 241 ~ 241 (338)
.
T Consensus 495 ~ 495 (679)
T PRK02628 495 G 495 (679)
T ss_pred C
Confidence 6
No 85
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.53 E-value=1.8e-06 Score=77.15 Aligned_cols=142 Identities=21% Similarity=0.230 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhhc--CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHH
Q 019615 93 LVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVAD 168 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~ 168 (338)
++..+.+.+-++.++.. ...+.+.+|||+||++++++|.+.+.+.. ....+.++..... ...+...|+.+++
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~----~~~~~~av~mP~~~~~~~~~~da~~~~~ 81 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGD----SKENVLAVRLPYGYTVQADEEDAQDLAE 81 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhcccc----chhheeeEECCCCCccccCHHHHHHHHH
Confidence 34444444555555542 35688999999999999999999875210 0023666666554 3457888999999
Q ss_pred HhCCCceEEEeChhHHHHHH-HHHHHhhcc-----CCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccc
Q 019615 169 YLGTRHHEFHFTVQEGIDAL-EEVIYHIET-----YDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 241 (338)
Q Consensus 169 ~lg~~~~~v~~~~~~~~~~l-~~~~~~~e~-----~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~ 241 (338)
.+|+...++++.+ .++.+ ..+...... ....++.+..-+-.++..|.+.|.-|+=||+ .+|+.-||....
T Consensus 82 ~lg~~~~~i~I~~--~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn-~sE~~~Gy~Tky 157 (268)
T COG0171 82 ALGIDYKEINIKP--AVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGN-KSELALGYFTKY 157 (268)
T ss_pred HhCCceEEEecHH--HHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCc-HHHHhcCceecc
Confidence 9999987877764 33432 221111111 1011111222233344445566655555554 789999997644
No 86
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=5.6e-07 Score=80.03 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=75.1
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc----CC-------CCchHHHHHHHHHHhCCCceEEEe
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG----LE-------GSPDLKAAREVADYLGTRHHEFHF 179 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~----~~-------~~~e~~~A~~~a~~lg~~~~~v~~ 179 (338)
..|.|++|||+||++-|.++++.+. ++..+-+. ++ .+.|...|+.+|++|+++.+.+++
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~----------~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGY----------NVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCC----------CeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 4689999999999999999988753 44444331 11 235889999999999999999999
Q ss_pred ChhHHHHHHHHHHHhh---ccCCccccCch-HHHHH-HHHHh-hhCCCeEEEecCchhhcccCCc
Q 019615 180 TVQEGIDALEEVIYHI---ETYDVTTIRAS-TPMFL-MSRKI-KSLGVKMVISGEGSDEIFGGYL 238 (338)
Q Consensus 180 ~~~~~~~~l~~~~~~~---e~~~~~~~~~~-~~~~~-l~~~a-~~~g~~vvltG~GgDelf~Gy~ 238 (338)
..+...+-+...+... -+|++ .+.+. ..-+- +.+.| ...|.+.+.||+.|--++.-+.
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~TPNP-DI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRTPNP-DILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED 139 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-CccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc
Confidence 8654444444443322 23433 22221 11111 22222 2357889999999876666543
No 87
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.46 E-value=1.1e-06 Score=83.04 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=67.6
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--C-CchHHHHHHHHHHhC---CCceEEEeChhH
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--G-SPDLKAAREVADYLG---TRHHEFHFTVQE 183 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~-~~e~~~A~~~a~~lg---~~~~~v~~~~~~ 183 (338)
+.++.+++|||+||++++.++.+.+ .++.++++... . ..+...++.+|+.++ .+...+.++..+
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~krG----------~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~ 241 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMKRG----------CRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFTD 241 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHHcC----------CeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCHH
Confidence 4578999999999999999997753 45666555432 2 346778899999884 333444444333
Q ss_pred HHHHHHHHHHhhccCCccccCchHHHH-HHHHHhhhCCCeEEEecCchhhc
Q 019615 184 GIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 184 ~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvltG~GgDel 233 (338)
+.+ ++...... ...++.+...++ .+.+.|.+.|++.++||+..|++
T Consensus 242 ~~~---~i~~~~~~-~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 242 VQE---EIIHIIPE-GYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQV 288 (371)
T ss_pred HHH---HHHhcCCC-CceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhh
Confidence 322 22211111 111222222232 34566788999999999998875
No 88
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.45 E-value=1.2e-06 Score=73.70 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=60.6
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~ 189 (338)
++.+++|||+||++++.++.+.. .++.++++.+. ...|.+.++++++.+| ++..+....
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~-------- 61 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPARN-------- 61 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCcC--------
Confidence 47899999999999999988753 35677776543 2346788999999999 433322100
Q ss_pred HHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhc
Q 019615 190 EVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 190 ~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
....-.+.+.|.+.|++.+++|+..|+.
T Consensus 62 ----------------~~~~~~l~~~a~~~g~~~i~~G~~~~d~ 89 (169)
T cd01995 62 ----------------LIFLSIAAAYAEALGAEAIIIGVNAEDY 89 (169)
T ss_pred ----------------HHHHHHHHHHHHHCCCCEEEEeeccCcc
Confidence 0111134556677899999999999885
No 89
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.41 E-value=1.8e-06 Score=81.41 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=67.8
Q ss_pred cCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCce-----EEEeChh-
Q 019615 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHH-----EFHFTVQ- 182 (338)
Q Consensus 109 ~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~-----~v~~~~~- 182 (338)
+.+++.+++|||+||++.+.++.+.+ .++.++++... ..+.+.++++|+.++..+. .+.++..
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~krG----------~~V~~v~f~~g-~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~ 247 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMMKRG----------VEVIPVHIYMG-EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQE 247 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHcC----------CeEEEEEEEeC-HHHHHHHHHHHHHhcccccCCcceEEEEChHH
Confidence 35679999999999999999998864 45666665322 3457788899999884322 2333322
Q ss_pred --HHHHHHHHHHHhhccCCccccCchHHH-HHHHHHhhhCCCeEEEecCchhhc
Q 019615 183 --EGIDALEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 183 --~~~~~l~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~vvltG~GgDel 233 (338)
++.+.+.+. . .....++.+...+ ..+.+.|.+.|++.++||+..+.+
T Consensus 248 ~~~v~~~i~~~---~-~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 248 RERIIQKLKEL---K-KENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred HHHHHHHHHHh---c-cCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 122222211 1 1111222222223 345567888999999999987765
No 90
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.39 E-value=2.3e-06 Score=73.50 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=60.3
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--------CCchHHHHHHHHHHhCCCceEEEeChh-
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--------GSPDLKAAREVADYLGTRHHEFHFTVQ- 182 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--------~~~e~~~A~~~a~~lg~~~~~v~~~~~- 182 (338)
++++++|||.||++.+.++.+.+ .++.++++..+ ...+.+.++++|+.+|++|..+.++.+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~ 70 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE 70 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCc
Confidence 46899999999999999998854 34555443211 123778999999999999999886431
Q ss_pred -HHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhh
Q 019615 183 -EGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 183 -~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
++.+ .++...+.+++.|++++++|+-.++
T Consensus 71 e~~~~---------------------~l~~~l~~~~~~g~~~vv~G~i~sd 100 (194)
T cd01994 71 EDEVE---------------------DLKELLRKLKEEGVDAVVFGAILSE 100 (194)
T ss_pred hHHHH---------------------HHHHHHHHHHHcCCCEEEECccccH
Confidence 1111 1111222223338999999998766
No 91
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.38 E-value=1.8e-06 Score=72.14 Aligned_cols=116 Identities=20% Similarity=0.143 Sum_probs=67.9
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~ 189 (338)
++.+++|||.||++++.++.+...+. .++..+++ +........+++++++.+|++++.+..+...... ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 72 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEG-LA 72 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHH-HH
Confidence 47899999999999999998875310 14554444 3332345688999999999999988765432111 00
Q ss_pred HHHHhhccCCccccCch--HHHHHHHHHhhhCCCeEEEecCchhhccc
Q 019615 190 EVIYHIETYDVTTIRAS--TPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (338)
Q Consensus 190 ~~~~~~e~~~~~~~~~~--~~~~~l~~~a~~~g~~vvltG~GgDelf~ 235 (338)
........+....-.+. .-.-.+.+.+++.+..++++|.-+||...
T Consensus 73 ~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~ 120 (173)
T cd01713 73 LGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120 (173)
T ss_pred HhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchh
Confidence 11111011110000000 00112334455668899999999999644
No 92
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.37 E-value=1.3e-06 Score=82.45 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=56.2
Q ss_pred ceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcE---EeCCCcEEEecC
Q 019615 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFI---SFPPGHIYSSKQ 69 (338)
Q Consensus 2 l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~---~l~pG~~~~~~~ 69 (338)
++|.|++++-|. +.+..+|||.|.|||+|....++.++||||..++-...+.|. +|.||+.+.++.
T Consensus 326 ~dGp~aiv~~dg--~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~ 394 (413)
T cd00713 326 WDGPAAIAFTDG--RQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDL 394 (413)
T ss_pred CCCcEEEEEEeC--CEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEEC
Confidence 689999999885 689999999999999999865567999999998854456675 899999988754
No 93
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.36 E-value=6.4e-06 Score=75.32 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=67.8
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l 188 (338)
.++++++|||.||++++.++.+..... +.++..+++ ++.-....+++.++|+.+|++++++... +. +
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~------~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~--~~---i 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG------KLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP--EG---I 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc------CCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh--HH---H
Confidence 568899999999999999998876431 124455554 3332234678999999999999887533 11 1
Q ss_pred HHHHHhhccCCc-cccCchH-HHHHHHHHhhhCCCeEEEecCchhh
Q 019615 189 EEVIYHIETYDV-TTIRAST-PMFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 189 ~~~~~~~e~~~~-~~~~~~~-~~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
. .....+.. .+..+.. -...+.+.+++.|++++++|.-.||
T Consensus 97 ~---~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 97 A---RGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred h---cCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 1 11111111 0000111 1134556677789999999999998
No 94
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.34 E-value=2.7e-06 Score=74.43 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=58.2
Q ss_pred EEecCcccHHHHHHHHHHHhchhhhhhhcCCCcc-eeeccCC-------CCchHHHHHHHHHHhCCCceEEEeChhHHHH
Q 019615 115 VLLSGGLDSSLVAAVASRYLADSEAACQWGSQLH-SFCIGLE-------GSPDLKAAREVADYLGTRHHEFHFTVQEGID 186 (338)
Q Consensus 115 v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~-~~t~~~~-------~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~ 186 (338)
+++|||+||++.+..+.+.+ .++. .+++... ...+.+.++++|+.+|++|+.+.++... -+
T Consensus 2 vl~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~-~~ 70 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG----------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK-EK 70 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC----------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC-hH
Confidence 68999999999999988753 3443 3333211 2357889999999999999998876210 00
Q ss_pred HHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhh
Q 019615 187 ALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 187 ~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
..+ .++...+.+++.|++.+++|.-.++
T Consensus 71 ~~~------------------~l~~~l~~~~~~g~~~vv~G~i~sd 98 (218)
T TIGR03679 71 EVE------------------DLKGALKELKREGVEGIVTGAIASR 98 (218)
T ss_pred HHH------------------HHHHHHHHHHHcCCCEEEECCcccH
Confidence 000 0222223344459999999997763
No 95
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.3e-06 Score=68.98 Aligned_cols=62 Identities=29% Similarity=0.314 Sum_probs=49.4
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQE 183 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~ 183 (338)
.+++++|||-|||+-|.++.+.+. .+...|+.|.--+...+|++.|+.+|.+|..+.++.+-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgy----------ev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGY----------EVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCC----------CcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHH
Confidence 478999999999999999988754 34444444443467889999999999999999988643
No 96
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.31 E-value=3.4e-06 Score=82.51 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=66.0
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCC--chHHHHHHHHHHhCCCce--EEEeChhH
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGS--PDLKAAREVADYLGTRHH--EFHFTVQE 183 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~--~e~~~A~~~a~~lg~~~~--~v~~~~~~ 183 (338)
.+++.++||||+||++.+.++.+.+ .++.++++ |.... .+.+.++.++++++.+|. .+.++..+
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~krG----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~~ 246 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRRG----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFEP 246 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHcC----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecHH
Confidence 4468899999999999999987754 35665554 43321 267888899988885554 44444333
Q ss_pred HHHHHHHHHHhhccCCccccCchHHHH-HHHHHhhhCCCeEEEecCchhhc
Q 019615 184 GIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 184 ~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvltG~GgDel 233 (338)
... ++..... .....+.....++ ...+.|.+.|++.++||+..|++
T Consensus 247 ~~~---~i~~~~~-~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dv 293 (482)
T PRK01269 247 VVG---EILEKVD-DGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQV 293 (482)
T ss_pred HHH---HHHhcCC-CceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhh
Confidence 222 2221111 1100100011112 23566778999999999998875
No 97
>PRK05370 argininosuccinate synthase; Validated
Probab=98.24 E-value=8.1e-06 Score=77.12 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=75.7
Q ss_pred hhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCC--CchHHHHHHHHHHhCC-CceEEEeChh
Q 019615 106 RLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGT-RHHEFHFTVQ 182 (338)
Q Consensus 106 rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~~a~~lg~-~~~~v~~~~~ 182 (338)
.|....+|++++|||+|||+++..+++.. -.++||++.... ..|.+.+++-|..+|. ++.++....
T Consensus 7 ~l~~~~KVvLAYSGGLDTSv~l~wL~e~~----------~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~- 75 (447)
T PRK05370 7 HLPVGQRVGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRA- 75 (447)
T ss_pred hCCCCCEEEEEecCCchHHHHHHHHHhcC----------CeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHH-
Confidence 45556789999999999999999888752 478999864433 4678899999999998 577777654
Q ss_pred HHHH-HHHHHHHhhcc--------CCccccCchHHH--HHHHHHhhhCCCeEEE---ecCchhhc
Q 019615 183 EGID-ALEEVIYHIET--------YDVTTIRASTPM--FLMSRKIKSLGVKMVI---SGEGSDEI 233 (338)
Q Consensus 183 ~~~~-~l~~~~~~~e~--------~~~~~~~~~~~~--~~l~~~a~~~g~~vvl---tG~GgDel 233 (338)
++.+ .+ ..+...-. +.. ....+.+. -.+.+.|++.|++++. ||-|-|++
T Consensus 76 eF~e~~i-~aI~anA~Y~~~~e~~Y~l-~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 76 QLVAEGI-AAIQCGAFHISTGGVTYFN-TTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHHHHH-HHHHcCCccccccCccccC-CCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH
Confidence 4443 34 44433221 111 11112222 2355678889999886 55566664
No 98
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.21 E-value=2.9e-06 Score=72.58 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=54.8
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec---cCCCCchHHHHHHHHHHhC-----CCceEEEeCh
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI---GLEGSPDLKAAREVADYLG-----TRHHEFHFTV 181 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~---~~~~~~e~~~A~~~a~~lg-----~~~~~v~~~~ 181 (338)
..++.++||||+||.+-+.++.+.+ ..+.+.++ .+.+......++++++.+. .+...+.++.
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~krG----------~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKRG----------CEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCBT-----------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred CceEEEEecCCccHHHHHHHHHHCC----------CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 4678899999999999999988764 34444443 2333334455666666653 2333444444
Q ss_pred hHHHHHHHHHHHhhccCCccccCchHHHHHHH-HHhhhCCCeEEEecCchhhc
Q 019615 182 QEGIDALEEVIYHIETYDVTTIRASTPMFLMS-RKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 182 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~-~~a~~~g~~vvltG~GgDel 233 (338)
.++.. ++.... ....+++.+...|+..+ +.|.+.|++.++||+--.++
T Consensus 73 ~~~~~---~i~~~~-~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 73 TEVQK---EILRGV-KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp HHHHH---HHHHHS--GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSST
T ss_pred HHHHH---HHHhcC-CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHH
Confidence 33333 222222 11122332333344333 45678999999999854443
No 99
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=98.20 E-value=6.3e-06 Score=77.30 Aligned_cols=110 Identities=23% Similarity=0.263 Sum_probs=65.7
Q ss_pred EEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCC-chHHHHHHHHHHhCC-CceEEEeChhHHH-HHHHH
Q 019615 114 GVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADYLGT-RHHEFHFTVQEGI-DALEE 190 (338)
Q Consensus 114 ~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~e~~~A~~~a~~lg~-~~~~v~~~~~~~~-~~l~~ 190 (338)
.+++|||||||+++..+.+... .+++||++..... .|...+++-|..+|. +++.+.... ++. +.+-.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~---------~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~-ef~~~~i~~ 70 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGG---------YEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARD-EFAEDYIFP 70 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTT---------EEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HH-HHHHHTHHH
T ss_pred CeeeCCChHHHHHHHHHHhhcC---------ceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHH-HHHHHHHHH
Confidence 4789999999999999988752 4789998755433 688899999999998 888888754 454 44444
Q ss_pred HHHhhccCCc-cccCc--hHHH--HHHHHHhhhCCCeEEE---ecCchhhc
Q 019615 191 VIYHIETYDV-TTIRA--STPM--FLMSRKIKSLGVKMVI---SGEGSDEI 233 (338)
Q Consensus 191 ~~~~~e~~~~-~~~~~--~~~~--~~l~~~a~~~g~~vvl---tG~GgDel 233 (338)
.+.....+.. -.+.. +-|. -.+.+.|++.|++++. ||-|-|++
T Consensus 71 aI~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv 121 (388)
T PF00764_consen 71 AIKANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV 121 (388)
T ss_dssp HHHTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH
T ss_pred HHHHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh
Confidence 4443221111 00111 2222 2344667888999886 45566754
No 100
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=98.17 E-value=5.6e-06 Score=69.88 Aligned_cols=126 Identities=20% Similarity=0.142 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhhc---------C-CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHH
Q 019615 94 VLRKAFEKAVVKRLMT---------D-VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAA 163 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~---------~-~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A 163 (338)
++.+.|.+.++.|+.. | .+++|++|||.|||+.+-++...+- .+.--|+-.++ .=...+
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g~----------~v~p~t~~Lp~-~ir~n~ 102 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAGF----------TVDPGTAILPD-HIRRNK 102 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhce----------eeccccccCCH-HHhHHH
Confidence 3455666667777643 2 5799999999999999888876531 11111222221 124567
Q ss_pred HHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCc-hHHHHHHHHHhhhCCCeEEEecCchhhcccCCcc
Q 019615 164 REVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (338)
Q Consensus 164 ~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~-~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~ 239 (338)
...+..+|..+..+..+ +..+.+-. ++.-.+++-++ ++..-.+..++++.+++++.+|++ |-.||..
T Consensus 103 ~~l~~~lg~~p~yveed----l~~i~kGa--lnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDl---Ls~G~~s 170 (255)
T COG1365 103 EELETLLGEVPEYVEED----LEDIEKGA--LNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDL---LSTGYGS 170 (255)
T ss_pred HHHHHHHccCHHHHHHH----HHHHHhhh--ccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccc---ccccccc
Confidence 78899999876654322 12222211 11111223232 233455677888999999999865 5678874
No 101
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.17 E-value=9.3e-06 Score=78.40 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=53.8
Q ss_pred HHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCC-Cc-hHHHHHHHHHHhCCCceE
Q 019615 101 KAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEG-SP-DLKAAREVADYLGTRHHE 176 (338)
Q Consensus 101 ~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~-~~-e~~~A~~~a~~lg~~~~~ 176 (338)
+.++..+....++.|++|||.||++++.++.+..... .+.++.++++ |... ++ +..+++.+|+.+|++++.
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~ 80 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-----PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVV 80 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEE
Confidence 4445556667889999999999999999987643110 0235666665 4432 32 357889999999999999
Q ss_pred EEeCh
Q 019615 177 FHFTV 181 (338)
Q Consensus 177 v~~~~ 181 (338)
+.++.
T Consensus 81 ~~~~~ 85 (436)
T PRK10660 81 ERVQL 85 (436)
T ss_pred EEEec
Confidence 87753
No 102
>PRK08576 hypothetical protein; Provisional
Probab=98.15 E-value=2.8e-05 Score=74.45 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhhcCC--ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCCCchHHHHHHHHHHh
Q 019615 95 LRKAFEKAVVKRLMTDV--PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYL 170 (338)
Q Consensus 95 l~~~l~~av~~rl~~~~--~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~~a~~l 170 (338)
+-+.+.+.+.+.+.... ++.+++|||.||++++.++.+... ++.++++. +......++++++++.+
T Consensus 217 ~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~----------~V~aV~iDTG~e~pet~e~~~~lae~L 286 (438)
T PRK08576 217 VLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFG----------DVTAVYVDTGYEMPLTDEYVEKVAEKL 286 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhCC----------CCEEEEeCCCCCChHHHHHHHHHHHHc
Confidence 34444444443343333 799999999999999999888652 35666553 32223578899999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHH-HHHHHHHhhhCCCeEEEecCchhh
Q 019615 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 171 g~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
|++++...++... ... ....+...+-.+... ...+.+.+++.|+.++++|+-.||
T Consensus 287 GI~lii~~v~~~~---~~~----~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~dE 342 (438)
T PRK08576 287 GVDLIRAGVDVPM---PIE----KYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGE 342 (438)
T ss_pred CCCEEEcccCHHH---Hhh----hcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHH
Confidence 9998773332211 111 111111111011111 124556677789999999998777
No 103
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=98.13 E-value=3.4e-05 Score=78.62 Aligned_cols=89 Identities=22% Similarity=0.236 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhhc--CCceEEEecCcccHHHHHHHH-------HHHhchhh--h-------hh-----------h-
Q 019615 93 LVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVA-------SRYLADSE--A-------AC-----------Q- 142 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~-------~~~~~~~~--~-------~~-----------~- 142 (338)
+++.......+..+++. ...+.+.||||+||+++|+++ .+.+..+. . .+ .
T Consensus 329 ~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (700)
T PLN02339 329 EEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEF 408 (700)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhh
Confidence 56666666667776653 356889999999999988885 33331100 0 00 0
Q ss_pred cCCCcceeeccCCCC--chHHHHHHHHHHhCCCceEEEeCh
Q 019615 143 WGSQLHSFCIGLEGS--PDLKAAREVADYLGTRHHEFHFTV 181 (338)
Q Consensus 143 ~~~~~~~~t~~~~~~--~e~~~A~~~a~~lg~~~~~v~~~~ 181 (338)
.+.-+++++++...+ .....|+++|+.+|+.|+++++++
T Consensus 409 ~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~ 449 (700)
T PLN02339 409 AKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDG 449 (700)
T ss_pred hcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 000145666654433 346789999999999999999874
No 104
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.03 E-value=1.5e-05 Score=80.85 Aligned_cols=68 Identities=18% Similarity=0.400 Sum_probs=58.6
Q ss_pred CceeeEEEEEEEC-CCCEEEEEEccCCCcceEEEEecC--------------------CeEEEecccchhhhccCCcEEe
Q 019615 1 MLDGMFSFVLLDT-RDKSFIAARDAIGVTPLYMGWGLD--------------------GSIWFASEMKALSDDCERFISF 59 (338)
Q Consensus 1 ~l~G~fa~~i~D~-~~~~l~l~rD~~G~~pLyy~~~~~--------------------~~~~faSe~~~l~~~~~~i~~l 59 (338)
+|+|+|||++... ..++++.+||+ +||++....+ +.++|||++.+|....+.|..|
T Consensus 187 ~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~~~~t~~~~~l 263 (670)
T PTZ00394 187 MVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSFAEYTREVVFL 263 (670)
T ss_pred HccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHHHHhhceEEEe
Confidence 5899999999853 34899999999 9999998531 4799999999999999999999
Q ss_pred CCCcEEEecCCe
Q 019615 60 PPGHIYSSKQGG 71 (338)
Q Consensus 60 ~pG~~~~~~~~~ 71 (338)
++|++..++++.
T Consensus 264 ~dg~~~~~~~~~ 275 (670)
T PTZ00394 264 EDGDIAHYCDGA 275 (670)
T ss_pred cCCeEEEEECCE
Confidence 999998876553
No 105
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.03 E-value=4.9e-05 Score=70.09 Aligned_cols=113 Identities=24% Similarity=0.265 Sum_probs=73.2
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCC-CchHHHHHHHHHHhCCC-ceEEEeChhHHH-H
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG-SPDLKAAREVADYLGTR-HHEFHFTVQEGI-D 186 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~e~~~A~~~a~~lg~~-~~~v~~~~~~~~-~ 186 (338)
..+|++++|||||+|++...+.+... ..+.|||..... .+|...+++-|..+|.. +..+.... ++. +
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~~---------~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~re-eF~~~ 73 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKGG---------AEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDARE-EFVED 73 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhcC---------ceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHH-HHHHH
Confidence 35789999999999999999988763 478888865433 47899999999999986 66666654 444 3
Q ss_pred HHHHHHHhh---cc-CCccccCchHHHH--HHHHHhhhCCCeEEE---ecCchhhc
Q 019615 187 ALEEVIYHI---ET-YDVTTIRASTPMF--LMSRKIKSLGVKMVI---SGEGSDEI 233 (338)
Q Consensus 187 ~l~~~~~~~---e~-~~~~~~~~~~~~~--~l~~~a~~~g~~vvl---tG~GgDel 233 (338)
.+-..+... +. +...+ ..+-|+. .+-+.|++.|+..+- ||-|-|.+
T Consensus 74 yi~~~i~ana~Yeg~YpL~T-alaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 74 YIFPAIKANALYEGVYPLGT-ALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHHhhceeeccccccc-hhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 333333322 22 21111 0111221 234567788888774 66777765
No 106
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=97.99 E-value=1.8e-05 Score=80.56 Aligned_cols=68 Identities=19% Similarity=0.469 Sum_probs=58.0
Q ss_pred CceeeEEEEEEECCC-CEEEEEEccCCCcceEEEEec--C---------------------CeEEEecccchhhhccCCc
Q 019615 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGL--D---------------------GSIWFASEMKALSDDCERF 56 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~-~~l~l~rD~~G~~pLyy~~~~--~---------------------~~~~faSe~~~l~~~~~~i 56 (338)
+|+|+|||++.++.. ++++++||+ +||++.... + +.+++|||..+|....+.|
T Consensus 181 ~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~~al~~~~~~~ 257 (680)
T PLN02981 181 QLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDASAVVEHTKRV 257 (680)
T ss_pred hccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCHHHHHHhcCEE
Confidence 589999999999653 899999996 898888741 1 3699999999999999999
Q ss_pred EEeCCCcEEEecCCe
Q 019615 57 ISFPPGHIYSSKQGG 71 (338)
Q Consensus 57 ~~l~pG~~~~~~~~~ 71 (338)
..|+||+++.++++.
T Consensus 258 ~~l~~gei~~i~~~~ 272 (680)
T PLN02981 258 LVIEDNEVVHLKDGG 272 (680)
T ss_pred EEECCCeEEEEECCe
Confidence 999999999886543
No 107
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=97.88 E-value=9.7e-05 Score=67.14 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCch-HHHHHHHHHHhCC
Q 019615 96 RKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPD-LKAAREVADYLGT 172 (338)
Q Consensus 96 ~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e-~~~A~~~a~~lg~ 172 (338)
...|++++.. . ...++++|||.||++++.++.+.+... +.++..+++ |+. .+| .++..++++.+|+
T Consensus 9 i~ilRe~~~~-f---~~~vv~~SGGKDS~VlLhLa~kaf~~~------~~p~~vl~IDTG~~-F~Et~efrd~~a~~~gl 77 (294)
T TIGR02039 9 IHIIREVAAE-F---ERPVMLYSIGKDSSVLLHLARKAFYPG------PLPFPLLHVDTGWK-FREMIAFRDHMVAKYGL 77 (294)
T ss_pred HHHHHHHHHh-c---CCcEEEEecChHHHHHHHHHHHHhccc------CCCeEEEEEecCCC-CHHHHHHHHHHHHHhCC
Confidence 3445454443 1 234688999999999999999886431 134555554 333 334 5788899999999
Q ss_pred CceEEEeChhHHHHHHHHHHHhhccCCc-cccCch-HHHHHHHHHhhhCCCeEEEecCchhhc
Q 019615 173 RHHEFHFTVQEGIDALEEVIYHIETYDV-TTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 173 ~~~~v~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~-~~~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
+++++... +... .....+.. +...+. .-...+.+.+.+.|.+++++|.--||-
T Consensus 78 ~l~v~~~~--~~~~------~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe 132 (294)
T TIGR02039 78 RLIVHSNE--EGIA------DGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE 132 (294)
T ss_pred CEEEEech--hhhh------cCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh
Confidence 98887643 2111 00001100 000011 112446666777899999999999985
No 108
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.87 E-value=5.3e-05 Score=71.33 Aligned_cols=65 Identities=32% Similarity=0.348 Sum_probs=54.6
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEe
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSS 67 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~ 67 (338)
++.|.|++++-.. +.|+.+|||.|+|||-+....+|..++|||-.+|-.. .+-++.++||+.+.+
T Consensus 160 ~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i 225 (470)
T COG0034 160 RVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVII 225 (470)
T ss_pred hcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEE
Confidence 4789999999876 4899999999999999998645559999999888554 455789999999874
No 109
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00015 Score=66.59 Aligned_cols=68 Identities=26% Similarity=0.363 Sum_probs=55.9
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCC----eEEEecccchhhhc-cCCcEEeCCCcEEEecCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDG----SIWFASEMKALSDD-CERFISFPPGHIYSSKQG 70 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~----~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~ 70 (338)
+++|.|+.++--. ++|+.+|||+|.|||...+..+. .+++|||-.++... .+-.+.+.||+++.++..
T Consensus 163 ~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~ 235 (474)
T KOG0572|consen 163 LLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRN 235 (474)
T ss_pred hcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecC
Confidence 4789999998754 56999999999999999875322 79999999988765 566789999999988654
No 110
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=97.66 E-value=0.00024 Score=63.23 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=45.4
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeC
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFT 180 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~ 180 (338)
.++.+.+|||.||++++.++.+.. .++..+.+ |..-..-.++++++++++|++++++...
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~~----------~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~ 102 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQVD----------PDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPD 102 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 358999999999999999998864 34555544 4432223578999999999999888654
No 111
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00041 Score=61.30 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHH-HHHh
Q 019615 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREV-ADYL 170 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~-a~~l 170 (338)
.+.+...+.++.++. +.++-++||||+|||+.+.++.+... .+++|.-+ |+-.-.|.+...++ .+++
T Consensus 6 ~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~AiG---------d~l~cvfVD~GLlR~~E~e~V~~~f~~~~ 75 (315)
T COG0519 6 NFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAIG---------DQLTCVFVDHGLLRKGEAEQVVEMFREHL 75 (315)
T ss_pred HHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHhh---------cceEEEEecCCcccCCcHHHHHHHHHhhc
Confidence 344444555666654 67899999999999999999998873 56777655 44334555555544 4558
Q ss_pred CCCceEEE
Q 019615 171 GTRHHEFH 178 (338)
Q Consensus 171 g~~~~~v~ 178 (338)
|++...++
T Consensus 76 ~~nl~~Vd 83 (315)
T COG0519 76 GLNLIVVD 83 (315)
T ss_pred CCceEEEc
Confidence 88877765
No 112
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.46 E-value=0.00091 Score=61.18 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=65.9
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC-CCch-HHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~e-~~~A~~~a~~lg~~~~~v~~~~~~~~~~l 188 (338)
.++++++|||.||++++.++.+.+... +.++..+++... ..+| ..+..++++.+|++++++.. .+. ++
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~------~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~-~~~-~~-- 107 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPT------RPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN-PDG-IA-- 107 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhccc------CCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC-hHH-HH--
Confidence 356899999999999999999885322 134556655332 2344 57888999999998877643 222 11
Q ss_pred HHHHHhhccCCc-cccCch-HHHHHHHHHhhhCCCeEEEecCchhh
Q 019615 189 EEVIYHIETYDV-TTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 189 ~~~~~~~e~~~~-~~~~~~-~~~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
. ....+.. +...+. .-..-|.+.+.+.|.+++++|.--||
T Consensus 108 -~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE 149 (312)
T PRK12563 108 -R---GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDE 149 (312)
T ss_pred -h---CCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHH
Confidence 1 1111110 000011 11133455566678999999998887
No 113
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=97.41 E-value=0.0005 Score=57.55 Aligned_cols=107 Identities=20% Similarity=0.141 Sum_probs=56.2
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCch-HHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPD-LKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e-~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~ 190 (338)
.+.+.+|||.||++++.++.+...+ ..+.....+.+ .+| ..+++++++.+|++.+.+.... .....+..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~--------~~vv~~dtg~e-~p~t~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 70 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRK--------VPVVFIDTGYE-FPETYEFVDELAKRYGIPIIVYRPPE-TFEQRFIL 70 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTT--------CEEEEEE-STB--HHHHHHHHHHHHHTTCEEEEEETTS-HHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEecCcc-CHHHHHHHHHHHhhhhhhhhhccccc-chhhcccc
Confidence 3689999999999999999988742 12333344443 344 5889999999999966554432 22222221
Q ss_pred HHHhhccCCccccCc-hHHH---HHHHHHhhhCCCeEEEecCchhhc
Q 019615 191 VIYHIETYDVTTIRA-STPM---FLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 191 ~~~~~e~~~~~~~~~-~~~~---~~l~~~a~~~g~~vvltG~GgDel 233 (338)
.-. +.. .... .... --+.+..++.+..++++|.=+||=
T Consensus 71 ~~~----~~~-~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es 112 (174)
T PF01507_consen 71 YGW----PSK-LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADES 112 (174)
T ss_dssp HHH----STT-HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTST
T ss_pred ccc----cch-hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhch
Confidence 110 110 0000 0000 112334456677899999998884
No 114
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=97.41 E-value=0.00061 Score=63.81 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccC-CCCchH--HHHHHHH-HHhCCCc---eEEEeChh
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL-EGSPDL--KAAREVA-DYLGTRH---HEFHFTVQ 182 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~e~--~~A~~~a-~~lg~~~---~~v~~~~~ 182 (338)
.+++.++||||+||-+-+.++.+.+ ..+...++.. +...|. .-+..++ ..+.-.+ ....++-.
T Consensus 175 ~Gk~l~LlSGGIDSPVA~~l~mkRG----------~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~ 244 (383)
T COG0301 175 QGKVLLLLSGGIDSPVAAWLMMKRG----------VEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFT 244 (383)
T ss_pred CCcEEEEEeCCCChHHHHHHHHhcC----------CEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchH
Confidence 4567899999999999999887754 4555554432 222222 2233333 3343322 23333333
Q ss_pred HHHHHHHHHHHhh-ccCCccccCchHHHHHHH-HHhhhCCCeEEEecCchhh
Q 019615 183 EGIDALEEVIYHI-ETYDVTTIRASTPMFLMS-RKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 183 ~~~~~l~~~~~~~-e~~~~~~~~~~~~~~~l~-~~a~~~g~~vvltG~GgDe 232 (338)
++.+ ++.... +.+. ++-.--.||.++ +.|.+.|+..++||+---+
T Consensus 245 ~v~~---~i~~~~~~~y~--~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQ 291 (383)
T COG0301 245 EVQE---EILEKVPESYR--CVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQ 291 (383)
T ss_pred HHHH---HHHhhcCccce--ehHHHHHHHHHHHHHHHHhCCeEEEecCcchh
Confidence 3333 332222 1111 111122344443 4677889999999985433
No 115
>PRK08557 hypothetical protein; Provisional
Probab=97.37 E-value=0.003 Score=60.43 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=43.1
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
.++.+.+|||.||++++.++.+... ++..+++ |.....-.++++++++.+|++++.+.
T Consensus 182 ~~i~vsfSGGKDS~vlL~L~~~~~~----------~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 182 YAINASFSGGKDSSVSTLLAKEVIP----------DLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHhCC----------CCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4688999999999999999887642 3444443 44322235789999999999988875
No 116
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.36 E-value=0.00055 Score=73.47 Aligned_cols=65 Identities=22% Similarity=0.195 Sum_probs=53.0
Q ss_pred ceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCc-E--EeCCCcEEEec
Q 019615 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERF-I--SFPPGHIYSSK 68 (338)
Q Consensus 2 l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i-~--~l~pG~~~~~~ 68 (338)
++|.|++++-|. +.++..|||.|.|||-|....++.+++|||..++--.-..+ + +|.||.++.++
T Consensus 336 wdGpaaiv~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 336 WDGPAGIVMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred CCCCEEEEEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 489999999885 78999999999999976665577899999998775433343 4 79999998775
No 117
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00078 Score=60.21 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=72.7
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHH--H
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDA--L 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~--l 188 (338)
+.+.++.|||+|+|.|++.+.+++ -++.||........|.+.|++-|...|..-..+.=-.+++++. +
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqG----------yeViay~AnvGQ~edfe~ar~kAlk~Gakk~~~ed~~~eFvedfi~ 75 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQG----------YEVIAYLANVGQKEDFEEARKKALKSGAKKVVVEDVREEFVEDFIW 75 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcC----------ceEEEeeccccchhhHHHHHHhhhhcCceEEEehhhhHHHHhhcch
Confidence 567899999999999999999865 5789997644444688899999999998755543223344332 1
Q ss_pred HHHHHh--hc-cCCc-cc-cCchHHHHHHHHHhhhCCCeEE---EecCchhhcccCCcccccCC
Q 019615 189 EEVIYH--IE-TYDV-TT-IRASTPMFLMSRKIKSLGVKMV---ISGEGSDEIFGGYLYFHKAP 244 (338)
Q Consensus 189 ~~~~~~--~e-~~~~-~~-~~~~~~~~~l~~~a~~~g~~vv---ltG~GgDelf~Gy~~~~~~~ 244 (338)
|.+... .| .+.. +. .+..++ ....+.|++.|++.+ -||-|.|.+-.-...|...|
T Consensus 76 Pa~qs~a~YEd~YLLGTSlaRp~ia-~~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~ysl~P 138 (412)
T KOG1706|consen 76 PALQSSALYEDRYLLGTSLARPVIA-KAQVDVAQREGAKAVSHGCTGKGNDQVRFELTFYSLKP 138 (412)
T ss_pred hhhhhcchhhceeeeccccccchhh-hhhhhHHhhcCceeeecccccCCCcceeeeeeeeccCC
Confidence 111100 01 1111 00 000111 111233556677755 68889998866555554443
No 118
>PRK13795 hypothetical protein; Provisional
Probab=97.20 E-value=0.0016 Score=65.96 Aligned_cols=61 Identities=31% Similarity=0.413 Sum_probs=45.8
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeC
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFT 180 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~ 180 (338)
+.++.+.+|||.||++++.++.+... ++..+.+ +.......++++++++++|++++.+...
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~~----------~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~ 305 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREALK----------DFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAG 305 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhCC----------CcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEccc
Confidence 45899999999999999999988753 3444433 4433334688999999999998887643
No 119
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=97.04 E-value=0.0071 Score=52.88 Aligned_cols=60 Identities=27% Similarity=0.217 Sum_probs=41.8
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC-------CCchHHHHHHHHHHhCCCceEEEeCh
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-------GSPDLKAAREVADYLGTRHHEFHFTV 181 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-------~~~e~~~A~~~a~~lg~~~~~v~~~~ 181 (338)
++++++|||.||++-+..+.+. .+ ....+++-.. +......++..|+.+|+|++.+..+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~~---------V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-HE---------VISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-Ce---------eEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 4788999999999988877665 21 1222332111 13467889999999999998877653
No 120
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=97.02 E-value=0.0024 Score=57.13 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=48.3
Q ss_pred EEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEE
Q 019615 6 FSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLR 73 (338)
Q Consensus 6 fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 73 (338)
|+|++-|. .+|+..||+. ||||... ++.+++|||. |-.. ..++.+|||+++.++++.++
T Consensus 189 ~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~-~~W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 189 LNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD-PGWQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred eEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC-CCceEeCCCeEEEEECCcEE
Confidence 99999885 6899999987 9999985 6789999997 3222 48999999999999776543
No 121
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=97.01 E-value=0.0031 Score=56.69 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=50.2
Q ss_pred eeEEEEEEECCCCEEEEEEccCCCcceEEEEec-----------------CCeEEEecccchhhhccCCcEEeCCCcEEE
Q 019615 4 GMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL-----------------DGSIWFASEMKALSDDCERFISFPPGHIYS 66 (338)
Q Consensus 4 G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~-----------------~~~~~faSe~~~l~~~~~~i~~l~pG~~~~ 66 (338)
|.|+|++.|. .+++++||+. .+||||.... ++.++||||.-+... +.+.++||+.+.
T Consensus 180 ~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE~l~~~~---~w~~v~~ge~~~ 253 (257)
T cd01908 180 GRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTDDE---GWTEVPPGELVV 253 (257)
T ss_pred eEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeCCCCCCC---CceEeCCCEEEE
Confidence 7899998886 6799999999 8999999752 368999999776543 789999999998
Q ss_pred ecC
Q 019615 67 SKQ 69 (338)
Q Consensus 67 ~~~ 69 (338)
+++
T Consensus 254 i~~ 256 (257)
T cd01908 254 VSE 256 (257)
T ss_pred EeC
Confidence 764
No 122
>PRK13794 hypothetical protein; Provisional
Probab=96.96 E-value=0.0037 Score=61.13 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=44.6
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEe
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHF 179 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~ 179 (338)
..++.+.+|||.||++++.++.+.+. .++..+.+ |+......++++++++++|++++.+..
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~---------~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~ 309 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALG---------INFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKS 309 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhC---------CCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEch
Confidence 35799999999999999999887742 23444443 443333467899999999999877653
No 123
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=96.92 E-value=0.0096 Score=51.83 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=42.2
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC-CCch-HHHHHHHHHHhCCCceEEE
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~e-~~~A~~~a~~lg~~~~~v~ 178 (338)
..+++.+|||.||++++-++.+... ++..+.+... +.+| .++.+++++.+|++...+.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~~----------~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~ 73 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKISP----------DIPVIFLDTGYHFPETYELIDELTERYPLNIKVYK 73 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcCC----------CCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 4699999999999999999988653 3444444322 2344 4678999999998766654
No 124
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.86 E-value=0.0036 Score=45.96 Aligned_cols=21 Identities=52% Similarity=0.665 Sum_probs=18.6
Q ss_pred eEEEecCcccHHHHHHHHHHH
Q 019615 113 FGVLLSGGLDSSLVAAVASRY 133 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~ 133 (338)
+.+.+|||.||+.++.++.+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~ 21 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRL 21 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHH
Confidence 468999999999999999876
No 125
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.44 E-value=0.033 Score=50.13 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=63.4
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~ 187 (338)
+.++.+..|||.||++++.++.+... ++..+.+ |+.-..-.+++.++++++|++..+..... ...+.
T Consensus 39 ~~~~~~~~S~Gkds~V~l~L~~k~~~----------~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~~~~-~~~~~ 107 (261)
T COG0175 39 SNPVVVSFSGGKDSTVLLHLAAKAFP----------DFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRPDD-EVAEG 107 (261)
T ss_pred CCCeEEEecCchhHHHHHHHHHHhcC----------CCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEecCcc-chhhh
Confidence 45679999999999999999998864 2333433 33322236889999999997776665433 22222
Q ss_pred HHHHHHhhccCCccccCchHH-HHHHHHHhhhCCCeEEEecCchhhccc
Q 019615 188 LEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIFG 235 (338)
Q Consensus 188 l~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvltG~GgDelf~ 235 (338)
.........+......+.+. .--+.+...+.+....++|.=-||-+.
T Consensus 108 -~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~ 155 (261)
T COG0175 108 -EKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPT 155 (261)
T ss_pred -hhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEecccccccc
Confidence 11111111121000001110 011333344444467888887777555
No 126
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=96.41 E-value=0.026 Score=49.71 Aligned_cols=66 Identities=6% Similarity=-0.102 Sum_probs=44.8
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChh
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQ 182 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~ 182 (338)
..++++..|||.||++++.++.+..... .++..+..|..-..-.+++.++++++|+..+.+...+.
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~~~-------i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~ 90 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISEPM-------IPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGC 90 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhCCC-------CCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCc
Confidence 3468999999999999999999876211 23433333443222357899999999966655554443
No 127
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=96.38 E-value=0.031 Score=53.90 Aligned_cols=123 Identities=20% Similarity=0.185 Sum_probs=61.4
Q ss_pred cCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC-CCch-H-------HHHHHHHHHhCCCceEEEe
Q 019615 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-L-------KAAREVADYLGTRHHEFHF 179 (338)
Q Consensus 109 ~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~e-~-------~~A~~~a~~lg~~~~~v~~ 179 (338)
.+.|..|.+|||-||++++.++.+.+..... ......++.++.... +.++ . ...+..|+..|++.....+
T Consensus 12 ~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~-e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~v 90 (447)
T TIGR03183 12 DDIPWVVGYSGGKDSTAVLQLIWNALAALPA-EQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEPHRL 90 (447)
T ss_pred cCCceEEEeCCCHHHHHHHHHHHHHHHhccc-cccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Confidence 5678999999999999999988776422100 000012333332211 1222 1 2344567777888766555
Q ss_pred ChhHHHHHHHHHHHhhccCCc-cccC-ch-----HHH-HHHHHHhhhCCCeEEEecCchhhc
Q 019615 180 TVQEGIDALEEVIYHIETYDV-TTIR-AS-----TPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 180 ~~~~~~~~l~~~~~~~e~~~~-~~~~-~~-----~~~-~~l~~~a~~~g~~vvltG~GgDel 233 (338)
.+..-...+..++. ...|.+ ...+ +. .|+ .++.+..++.|..++++|.=.||=
T Consensus 91 ~P~~~~~Fwv~liG-rG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES 151 (447)
T TIGR03183 91 TPEIKDTFWVNLIG-KGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAES 151 (447)
T ss_pred CCCcchHHHHHHhc-CCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhH
Confidence 54311122222222 111111 0111 11 121 233344445677899999987773
No 128
>PRK06850 hypothetical protein; Provisional
Probab=96.38 E-value=0.046 Score=53.50 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=65.5
Q ss_pred HHHHHHHhh-hcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC-CCchH--------HHHHHHHH
Q 019615 99 FEKAVVKRL-MTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPDL--------KAAREVAD 168 (338)
Q Consensus 99 l~~av~~rl-~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~e~--------~~A~~~a~ 168 (338)
+.+.|++.. ..+.|+.|.+|||-||++++.++.+.+..... .....+++.++.... +.++. ...+..|+
T Consensus 22 ~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~-e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~ 100 (507)
T PRK06850 22 LIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPP-EKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAK 100 (507)
T ss_pred HHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcch-hccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 334444443 34678999999999999999988776432100 000012333332211 12221 23345577
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCcc-ccCchH------HH-HHHHHHhhhCCCeEEEecCchhhc
Q 019615 169 YLGTRHHEFHFTVQEGIDALEEVIYHIETYDVT-TIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 169 ~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~-~~~~~~------~~-~~l~~~a~~~g~~vvltG~GgDel 233 (338)
..|++.+...+.+..-...+..++.. ..|.+. ..+.+. |+ .++.+..++.|-.++++|.=.||=
T Consensus 101 ~~glpi~~~~v~P~~~~sFwv~liGr-G~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES 172 (507)
T PRK06850 101 KQGLPITPHKLTPKINDTFWVNLIGK-GYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAES 172 (507)
T ss_pred HcCCceEEEeeCCCcchhHHHHHhcC-CCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeecccc
Confidence 88888876555543111122222211 111110 111111 21 223333345567789999888774
No 129
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.018 Score=54.30 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=52.6
Q ss_pred HHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeC
Q 019615 103 VVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFT 180 (338)
Q Consensus 103 v~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~ 180 (338)
+++++. +..+.+++|||.|||+.++++.++... .++++..+ |+..-.|....++....+|++.+.++.+
T Consensus 224 i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~--------~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as 294 (552)
T KOG1622|consen 224 IRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGP--------DRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDAS 294 (552)
T ss_pred HHHHhc-ccceEEEecCCchHHHHHHHHHHhhCC--------CceEEEEecccchhhhHHHHHHHHHHHcCCceEEeech
Confidence 344444 677899999999999999999988753 35677654 5555567777777777799999988765
Q ss_pred h
Q 019615 181 V 181 (338)
Q Consensus 181 ~ 181 (338)
.
T Consensus 295 ~ 295 (552)
T KOG1622|consen 295 E 295 (552)
T ss_pred H
Confidence 3
No 130
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=95.96 E-value=0.045 Score=50.01 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=35.8
Q ss_pred cCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCC--chHHHHHHHHH
Q 019615 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVAD 168 (338)
Q Consensus 109 ~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~e~~~A~~~a~ 168 (338)
.-..|+|.+|||-||++++.++.+...+.+ ..++..+.+.+++. --.++.+++-.
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~-----~~~i~VlfiD~E~QYs~TidyV~em~~ 82 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENG-----RDKISVLFIDWEAQYSCTIDYVQEMRE 82 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhC-----CCceEEEEEcchhhhhhHHHHHHHHHh
Confidence 446799999999999999999988765431 02566666666532 22344444444
No 131
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=95.90 E-value=0.045 Score=45.21 Aligned_cols=62 Identities=24% Similarity=0.455 Sum_probs=45.1
Q ss_pred eeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc--------------------------cCCc
Q 019615 3 DGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD--------------------------CERF 56 (338)
Q Consensus 3 ~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~--------------------------~~~i 56 (338)
+|+|+|.|=|+ +++|.+..|.-|.-|+|.-+ ++..|+...+|-+-.. .+++
T Consensus 99 EGdfcffiE~k-ng~L~l~Tds~G~~pv~lV~--~~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na 175 (201)
T PF09147_consen 99 EGDFCFFIEDK-NGELTLITDSRGFNPVYLVQ--SKFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNA 175 (201)
T ss_dssp -SSEEEEEEET-TSEEEEEE-SSSSS-EEEEE--SSSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTE
T ss_pred cCceEEEEecC-CCcEEEEecCCCCceEEEEe--cCceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccc
Confidence 69999999765 69999999999999999986 3567887777754321 2688
Q ss_pred EEeCCCcEEEe
Q 019615 57 ISFPPGHIYSS 67 (338)
Q Consensus 57 ~~l~pG~~~~~ 67 (338)
.++.||++-.+
T Consensus 176 ~RlkPGsin~l 186 (201)
T PF09147_consen 176 QRLKPGSINVL 186 (201)
T ss_dssp EEE-SSEEEEE
T ss_pred eecCCCceEEE
Confidence 99999998654
No 132
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=95.29 E-value=0.17 Score=43.74 Aligned_cols=60 Identities=23% Similarity=0.208 Sum_probs=41.9
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcce-eeccCCC-------CchHHHHHHHHHHhCCCceEEEeCh
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHS-FCIGLEG-------SPDLKAAREVADYLGTRHHEFHFTV 181 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~-~t~~~~~-------~~e~~~A~~~a~~lg~~~~~v~~~~ 181 (338)
++.+++|||-||...+..+-+.+ ..+.+ .++..+. ..-...+...|+.+|+++.....+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G----------~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEG----------HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcC----------CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc
Confidence 46789999999988877777653 33433 2332221 2456789999999999988777664
No 133
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=95.04 E-value=0.068 Score=46.68 Aligned_cols=59 Identities=24% Similarity=0.192 Sum_probs=34.1
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC-------CCchHHHHHHHHHHhCCCceEEEeC
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-------GSPDLKAAREVADYLGTRHHEFHFT 180 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-------~~~e~~~A~~~a~~lg~~~~~v~~~ 180 (338)
++++++|||-||++-+..|.+. .+ -...+|+... +..-.+..+..|+.+|+|+..+.++
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~~---------v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-HE---------VVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT--E---------EEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-CC---------ccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEcc
Confidence 4678999999999888777665 21 1122222111 1123456778899999999988876
No 134
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=94.94 E-value=0.27 Score=43.00 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=38.4
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC-------CCchHHHHHHHHHHhCCCceEEEe
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-------GSPDLKAAREVADYLGTRHHEFHF 179 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-------~~~e~~~A~~~a~~lg~~~~~v~~ 179 (338)
+.+++|||-||+.-+..|.+. .+ .+..+|+... +....+..+..|+.+|+|+..+..
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~-~~---------v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKE-HE---------VISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHh-Ce---------eEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 678999999999888877665 32 1222332111 123457888999999999877543
No 135
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=94.92 E-value=0.098 Score=51.92 Aligned_cols=67 Identities=28% Similarity=0.512 Sum_probs=57.6
Q ss_pred CceeeEEEEEEECCC-CEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCe
Q 019615 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGG 71 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~-~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~ 71 (338)
+|.|.||+++.|.+. ++++++|- -.||..... ++..++||++.+++...+.+..|..|.+..+.++.
T Consensus 150 ~l~Gsyal~~~~~~~p~~i~~ar~---~sPL~iG~g-~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~ 217 (597)
T COG0449 150 RLEGSYALLCTHSDFPDELVAARK---GSPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDG 217 (597)
T ss_pred HhcceeEEEEEecCCCCeEEEEcC---CCCeEEEec-CCcceEecChhhhhhhhceEEEeCCCCEEEEECCc
Confidence 589999999999877 78999986 379999985 67889999999999999999999999987765443
No 136
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=94.32 E-value=0.022 Score=56.70 Aligned_cols=51 Identities=31% Similarity=0.347 Sum_probs=46.0
Q ss_pred hhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHhhcccCCCCCCCCccc
Q 019615 270 KSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSH 331 (338)
Q Consensus 270 ~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR~a~~~~~~~~lP~~i~ 331 (338)
+ +|+.++|.|+||+|. ++++.+||...|... +.+|+++|.+.+. .+|+.+.
T Consensus 419 ~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~~~----~~gk~~lr~~~~~----~~p~~~~ 469 (542)
T COG0367 419 R-SMAKKLERRVPFSDG--VELPEEIPWREKIAF----GYGKGILRIAYEK----ILPDFIL 469 (542)
T ss_pred h-hhhhhhheecccccc--hhhHhhCChhhhhhc----CCcchhhHhhhhc----cCcHHHh
Confidence 7 899999999999999 999999999999986 3579999999999 8995544
No 137
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=92.25 E-value=1.2 Score=42.97 Aligned_cols=70 Identities=27% Similarity=0.382 Sum_probs=41.2
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchh----h-hhhhcCCCcc----------------------eeeccCCCC-ch-HHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADS----E-AACQWGSQLH----------------------SFCIGLEGS-PD-LKA 162 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~----~-~~~~~~~~~~----------------------~~t~~~~~~-~e-~~~ 162 (338)
-.-+.||||+||+++|++........ + ...+...++. |.-+|.+++ +| ...
T Consensus 351 GfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~r 430 (706)
T KOG2303|consen 351 GFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRR 430 (706)
T ss_pred ceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHH
Confidence 46689999999999988764332111 0 0000001111 111233332 34 467
Q ss_pred HHHHHHHhCCCceEEEeCh
Q 019615 163 AREVADYLGTRHHEFHFTV 181 (338)
Q Consensus 163 A~~~a~~lg~~~~~v~~~~ 181 (338)
|+++|+.+|.-|..+.++.
T Consensus 431 ak~La~~igs~H~~i~iD~ 449 (706)
T KOG2303|consen 431 AKELANQIGSYHIDLNIDT 449 (706)
T ss_pred HHHHHHhhcceeeeeeehH
Confidence 9999999999999998875
No 138
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=84.86 E-value=4.2 Score=37.30 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=62.2
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCC-chH-HHHHHHHHHhCCCceEEEeChhHHH
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGS-PDL-KAAREVADYLGTRHHEFHFTVQEGI 185 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~-~e~-~~A~~~a~~lg~~~~~v~~~~~~~~ 185 (338)
...|++.-|||-||+++|..+..+..... -|.++...++ +..+. ++. ...++....+++|..++. .+++.
T Consensus 51 ge~v~igasGgkdstvlA~v~~~Ln~r~~----~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs--~~dl~ 124 (347)
T KOG2840|consen 51 GERVAIGASGGKDSTVLAYVLDALNERHD----YGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVS--YKDLY 124 (347)
T ss_pred CCccccccccchhHHHHHHHHHHhhhhcC----CCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEec--HHHHh
Confidence 44589999999999999998877643210 0223333443 22222 333 344556678999999875 34443
Q ss_pred H-----HHHHHHHhhccCCccccCchHH-HHHHHHHhhhCCCeEEEecCchhhc
Q 019615 186 D-----ALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 186 ~-----~l~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
+ .+...+. .+.-+. +..+... .-++-+.+...|+.-+.||+.+|..
T Consensus 125 ~~~tmd~i~~~i~-~~~rn~-ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~ 176 (347)
T KOG2840|consen 125 GEWTMDEIVSEIG-QEIRNN-CTFCGVFRRQALDRGADVLGAAELVTGHNADDW 176 (347)
T ss_pred ccchHHHHHHHHh-hhhhcC-ceeecHHHHHHHHhhccccchhhhhhcccchHH
Confidence 2 2222111 011110 1111111 1233344555677788999999974
No 139
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=78.86 E-value=5.2 Score=34.12 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEe
Q 019615 120 GLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHF 179 (338)
Q Consensus 120 GlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~ 179 (338)
|+||++++.++.+... ++..+.+ |+.-..-.+++.++++++|++.+.+..
T Consensus 2 ~~~s~Vll~L~~~~~~----------~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRP----------DVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred ChHHHHHHHHHHhcCC----------CCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 7899999999998763 3444443 332222357899999999998777653
No 140
>PLN02309 5'-adenylylsulfate reductase
Probab=78.20 E-value=13 Score=36.23 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=37.8
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
.++++..|||-||. ++.++.+...+ .++.....|+.-..-.+++.++++++|++.+.+.
T Consensus 111 ~~ia~~~SG~ed~v-ll~l~~~~~~~--------ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~ 169 (457)
T PLN02309 111 NDIAIAFSGAEDVA-LIEYAHLTGRP--------FRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMF 169 (457)
T ss_pred CCEEEEecchHHHH-HHHHHHHhCCC--------CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 46899999777764 55566654321 2333333444322346889999999999887764
No 141
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=72.07 E-value=23 Score=34.69 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=38.6
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
.++++..|||-||. ++.++.+.... .++.....|+.-..-.+++.++++++|++.+.+.
T Consensus 116 ~~iavasSG~edsv-Llhl~~~~~~~--------ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~ 174 (463)
T TIGR00424 116 NDIAIAFSGAEDVA-LIEYAHLTGRP--------FRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMF 174 (463)
T ss_pred CCEEEEeccHHHHH-HHHHHHHhCCC--------CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 36899999887765 55666665421 2343333444322346889999999999887664
No 142
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=67.78 E-value=94 Score=29.83 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceE
Q 019615 97 KAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176 (338)
Q Consensus 97 ~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~ 176 (338)
+.+++.+..- ...+-++++|-|+=+...+- ..+.+. |..++++. +...+-..+.+++..++|+.-..
T Consensus 80 ~~le~~iaal--~ga~~~l~fsSGmaA~~~al--~~L~~~-------g~~iV~~~--~~Y~gT~~~l~~~~~~~gie~~~ 146 (409)
T KOG0053|consen 80 DVLESGIAAL--EGAAHALLFSSGMAAITVAL--LHLLPA-------GDHIVATG--DVYGGTLRILRKFLPKFGGEGDF 146 (409)
T ss_pred HHHHHHHHHH--hCCceEEEecccHHHHHHHH--HHhcCC-------CCcEEEeC--CCcccHHHHHHHHHHHhCceeee
Confidence 3444555442 23455899999995444332 223322 24455544 33345678889999999998888
Q ss_pred EEeChh-HHHHHHHH-H-HHhhccCCccccCchHHHHHHHHHhhhCCCeEEEec
Q 019615 177 FHFTVQ-EGIDALEE-V-IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (338)
Q Consensus 177 v~~~~~-~~~~~l~~-~-~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG 227 (338)
++++.- ++...+.+ . +-.+|.|.+|.... .-.-.+.+.|++.|+.|++..
T Consensus 147 vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v-~DI~~l~~la~~~g~~vvVDn 199 (409)
T KOG0053|consen 147 VDVDDLKKILKAIKENTKAVFLESPSNPLLKV-PDIEKLARLAHKYGFLVVVDN 199 (409)
T ss_pred echhhHHHHHHhhccCceEEEEECCCCCcccc-ccHHHHHHHHhhCCCEEEEeC
Confidence 765432 22333332 1 01246665543211 112356677888899988853
No 143
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=64.66 E-value=17 Score=32.79 Aligned_cols=61 Identities=31% Similarity=0.410 Sum_probs=30.2
Q ss_pred eeEEEEEEECCCCEEEEEEccCCCcceEEE------------------------EecCCeEEEecccchhhhccCCcEEe
Q 019615 4 GMFSFVLLDTRDKSFIAARDAIGVTPLYMG------------------------WGLDGSIWFASEMKALSDDCERFISF 59 (338)
Q Consensus 4 G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~------------------------~~~~~~~~faSe~~~l~~~~~~i~~l 59 (338)
|.+.|++.|. ..|++.|+ .+|||. ...+..+++|||.-. . -..-..|
T Consensus 170 ~~~N~~lsDG--~~l~a~~~----~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSePLt--~-~e~W~~v 240 (271)
T PF13230_consen 170 GSLNFLLSDG--ERLFAHRY----TSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEPLT--D-DEDWEPV 240 (271)
T ss_dssp EEEEEEEE-S--S-EEEEEE----ESSS----------------------EEEEETTTTEEEEESS-------SS--EE-
T ss_pred eeEEEEEECC--ceEEEEEc----CCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEeccCC--C-CCCeEEc
Confidence 7788999886 58999998 223332 112456778888433 2 2458899
Q ss_pred CCCcEEEecCCeEE
Q 019615 60 PPGHIYSSKQGGLR 73 (338)
Q Consensus 60 ~pG~~~~~~~~~~~ 73 (338)
|+|+.+.+..|++.
T Consensus 241 p~g~~l~~~~G~v~ 254 (271)
T PF13230_consen 241 PPGSLLVFRDGEVV 254 (271)
T ss_dssp -SSEEEE-------
T ss_pred CCCcEEEEeccccc
Confidence 99999999888653
No 144
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=56.28 E-value=11 Score=32.98 Aligned_cols=17 Identities=47% Similarity=0.464 Sum_probs=13.7
Q ss_pred CCceEEEecCcccHHHH
Q 019615 110 DVPFGVLLSGGLDSSLV 126 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~i 126 (338)
.+--|++||||+||..-
T Consensus 54 kGy~g~llSGGm~srg~ 70 (275)
T COG1856 54 KGYEGCLLSGGMDSRGK 70 (275)
T ss_pred cCceeEEEeCCcCCCCC
Confidence 34569999999999853
No 145
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=55.04 E-value=5 Score=18.15 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=10.2
Q ss_pred hhcCccccCCCCCH
Q 019615 273 SAWGVEARVPFLDK 286 (338)
Q Consensus 273 ~~~gve~r~PflD~ 286 (338)
|.|+...|+|-|.+
T Consensus 1 mthsmrlrfptlnq 14 (14)
T PF08057_consen 1 MTHSMRLRFPTLNQ 14 (14)
T ss_pred CccceeeeccccCC
Confidence 45778888888753
No 146
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=52.78 E-value=37 Score=27.75 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=39.0
Q ss_pred chHHH---HHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcc
Q 019615 158 PDLKA---AREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (338)
Q Consensus 158 ~e~~~---A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf 234 (338)
.|++. |..+.+.+|++++..-++.. .+|+ -++..++.+.+.|++|++.|-||-..+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~VvSAH-------------RTPe--------~m~~ya~~a~~~g~~viIAgAGgAAHL 71 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVRVVSAH-------------RTPE--------KMFEYAEEAEERGVKVIIAGAGGAAHL 71 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEEecc-------------CCHH--------HHHHHHHHHHHCCCeEEEecCcchhhc
Confidence 45554 44556677888776544421 2222 123445677889999999999998877
Q ss_pred cCCc
Q 019615 235 GGYL 238 (338)
Q Consensus 235 ~Gy~ 238 (338)
-|.-
T Consensus 72 PGmv 75 (162)
T COG0041 72 PGMV 75 (162)
T ss_pred chhh
Confidence 7764
No 147
>PRK05968 hypothetical protein; Provisional
Probab=48.14 E-value=1.7e+02 Score=27.86 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=55.8
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+.+.... +-++.+++|. +.+.+++.. .... |..+.+....+.. -.......++..|++...+.
T Consensus 68 le~~lA~l~g~--~~av~~~sG~-~Ai~~al~a-l~~~-------Gd~Vl~~~~~y~~--t~~~~~~~~~~~G~~v~~vd 134 (389)
T PRK05968 68 FEEMLAKLEGA--EDARGFASGM-AAISSTVLS-FVEP-------GDRIVAVRHVYPD--AFRLFETILKRMGVEVDYVD 134 (389)
T ss_pred HHHHHHHHhCC--CcEEEECCHH-HHHHHHHHH-HhCC-------CCEEEEeCCCchH--HHHHHHHHHHHcCceEEEeC
Confidence 33444444332 3467788887 333333332 2322 2344443332221 12233456777888877765
Q ss_pred eC-hhHHHHHHHH--HHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchh
Q 019615 179 FT-VQEGIDALEE--VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSD 231 (338)
Q Consensus 179 ~~-~~~~~~~l~~--~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgD 231 (338)
.. .+++.+.+++ +++ .+.|..+... ....-.+++.+++.|+.+++.+--+.
T Consensus 135 ~~d~~~l~~~i~~tklV~-ie~pt~~~~~-~~dl~~i~~la~~~gi~vivD~a~a~ 188 (389)
T PRK05968 135 GRDEEAVAKALPGAKLLY-LESPTSWVFE-LQDVAALAALAKRHGVVTMIDNSWAS 188 (389)
T ss_pred CCCHHHHHHhcccCCEEE-EECCCCCCCc-HHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 54 2222222211 010 1233322111 12344567778888999998875443
No 148
>PRK05967 cystathionine beta-lyase; Provisional
Probab=48.08 E-value=1.3e+02 Score=28.72 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=55.8
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~ 190 (338)
.+-++.+|.|+ +.+.+++...... |..+.+..-.+. .-......+++.+|++...+..+.. +.+++
T Consensus 79 ~~~~v~~sSG~--aAi~~~l~all~~-------GD~Vlv~~~~Y~--~~~~l~~~~l~~~Gi~v~~vd~~~~---e~l~~ 144 (395)
T PRK05967 79 SAGTILVPSGL--AAVTVPFLGFLSP-------GDHALIVDSVYY--PTRHFCDTMLKRLGVEVEYYDPEIG---AGIAK 144 (395)
T ss_pred CCCEEEECcHH--HHHHHHHHHhcCC-------CCEEEEccCCcH--HHHHHHHHHHHhcCeEEEEeCCCCH---HHHHH
Confidence 34568888886 4444433333332 244544433332 2334566778899998777754422 22333
Q ss_pred HHH------hhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 191 VIY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 191 ~~~------~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
.+. .++.|.++.. .....-.+++.+++.|+-+++..-
T Consensus 145 al~~~TklV~lesPsNP~l-~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 145 LMRPNTKVVHTEAPGSNTF-EMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred hcCcCceEEEEECCCCCCC-cHHHHHHHHHHHHHhCCEEEEECC
Confidence 321 1244544322 123345677888888988888765
No 149
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=47.32 E-value=70 Score=30.54 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=54.7
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~ 190 (338)
..-++++|.|+ ++|.+.+...... |..+.+....+. .-....+.....+|++...+.... .+.+++
T Consensus 70 g~~a~~~~SGm--aAi~~~l~~ll~~-------Gd~iv~~~~~Y~--~t~~~~~~~l~~~gv~v~~~d~~d---~~~l~~ 135 (386)
T PF01053_consen 70 GEDALLFSSGM--AAISAALLALLKP-------GDHIVASDDLYG--GTYRLLEELLPRFGVEVTFVDPTD---LEALEA 135 (386)
T ss_dssp -SEEEEESSHH--HHHHHHHHHHS-T-------TBEEEEESSSSH--HHHHHHHHCHHHTTSEEEEESTTS---HHHHHH
T ss_pred ccceeeccchH--HHHHHHHHhhccc-------CCceEecCCccC--cchhhhhhhhcccCcEEEEeCchh---HHHHHh
Confidence 35578899998 4443333333322 234444333222 234566677788999877765432 233333
Q ss_pred HHH------hhccCCccccCchHHHHHHHHHhhhCC-CeEEEecC
Q 019615 191 VIY------HIETYDVTTIRASTPMFLMSRKIKSLG-VKMVISGE 228 (338)
Q Consensus 191 ~~~------~~e~~~~~~~~~~~~~~~l~~~a~~~g-~~vvltG~ 228 (338)
.+. .+|.|.++... ..-.-.+++.|++.| +.+++..-
T Consensus 136 ~l~~~t~~v~~EspsNP~l~-v~Dl~~i~~~a~~~g~~~~vVDnT 179 (386)
T PF01053_consen 136 ALRPNTKLVFLESPSNPTLE-VPDLEAIAKLAKEHGDILVVVDNT 179 (386)
T ss_dssp HHCTTEEEEEEESSBTTTTB----HHHHHHHHHHTTT-EEEEECT
T ss_pred hccccceEEEEEcCCCcccc-cccHHHHHHHHHHhCCceEEeecc
Confidence 332 24666554332 122446778888888 88888754
No 150
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.03 E-value=91 Score=30.31 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=49.1
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEV 191 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~ 191 (338)
+-++.++.|. +++.+++.. .... |..+.+-...+.. . .......++.+|++...+. ++.+ .+.+++.
T Consensus 85 ~~~v~fsSG~-~Ai~~al~~-ll~~-------Gd~VI~~~~~y~~-t-~~~~~~~l~~~Gi~v~~vd-~~~d-~e~l~~~ 151 (437)
T PRK05613 85 VHAVAFASGQ-AAETAAILN-LAGA-------GDHIVTSPRLYGG-T-ETLFLVTLNRLGIEVTFVE-NPDD-PESWQAA 151 (437)
T ss_pred CeEEEeCCHH-HHHHHHHHH-hcCC-------CCEEEECCCccHH-H-HHHHHHHHHhcCeEEEEEC-CCCC-HHHHHHh
Confidence 4688999999 555544443 2221 2334332222221 1 2233455677888877765 1211 1223322
Q ss_pred HHh------hccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 192 IYH------IETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 192 ~~~------~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
+.. .+.+.++.. ...+.-.+++.+++.|+.+++.+-
T Consensus 152 l~~~tk~V~~e~~~Np~~-~v~di~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 152 VQPNTKAFFGETFANPQA-DVLDIPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred CCccCeEEEEECCCCCCC-cccCHHHHHHHHHHcCCeEEEECC
Confidence 211 122322111 012344566777778888887665
No 151
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=44.23 E-value=1.2e+02 Score=25.51 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=51.9
Q ss_pred CcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCch------HHHHHHHHHHhCCCceEEEeChhHHHHHHHHHH
Q 019615 119 GGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPD------LKAAREVADYLGTRHHEFHFTVQEGIDALEEVI 192 (338)
Q Consensus 119 GGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e------~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~ 192 (338)
=|-||+...-.+.+.+ .+++.|-+...-.+. ....+++|+.+|++..+-..+++++++.+.
T Consensus 7 CaPCs~~~~~~L~~~g----------~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~--- 73 (176)
T PF02677_consen 7 CAPCSTYPLERLREEG----------FDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVK--- 73 (176)
T ss_pred CccccHHHHHHHHHCC----------CCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHh---
Confidence 4778988887777653 355555443221222 244667899999988776666655544332
Q ss_pred Hhhc-cCCccccCchH----HHHHHHHHhhhCCCeEEEe
Q 019615 193 YHIE-TYDVTTIRAST----PMFLMSRKIKSLGVKMVIS 226 (338)
Q Consensus 193 ~~~e-~~~~~~~~~~~----~~~~l~~~a~~~g~~vvlt 226 (338)
..+ .|.. ..++.. -+-..++.|++.|.+..-|
T Consensus 74 -~~e~epE~-g~RC~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 74 -GLEDEPEG-GKRCRVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred -hCccCCcc-CchhHHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 222 2221 112221 1234567788888775555
No 152
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=42.37 E-value=2.7e+02 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=19.4
Q ss_pred hhhCCCeEEEecCchh-hcccCCccc
Q 019615 216 IKSLGVKMVISGEGSD-EIFGGYLYF 240 (338)
Q Consensus 216 a~~~g~~vvltG~GgD-elf~Gy~~~ 240 (338)
|-+.|+++|+||=-+| .+|.|...|
T Consensus 156 AL~~GADIVI~GR~~D~Al~~a~~~~ 181 (362)
T PF07287_consen 156 ALEAGADIVITGRVADPALFAAPAIH 181 (362)
T ss_pred HHHcCCCEEEeCcccchHHHHhHHHH
Confidence 3456999999999999 577777643
No 153
>PRK07582 cystathionine gamma-lyase; Validated
Probab=41.56 E-value=86 Score=29.53 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=51.7
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHH--
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE-- 190 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~-- 190 (338)
-.+.+++|.+ . +..++...... |..+.+..-.+. .-...++..++.+|++...+..+... ....++
T Consensus 67 ~~v~~~sG~~-A-i~~~l~all~~-------Gd~Vl~~~~~y~--~~~~~~~~~l~~~G~~v~~v~~~~~~-~~~~~~t~ 134 (366)
T PRK07582 67 EALVFPSGMA-A-ITAVLRALLRP-------GDTVVVPADGYY--QVRALAREYLAPLGVTVREAPTAGMA-EAALAGAD 134 (366)
T ss_pred CEEEECCHHH-H-HHHHHHHhcCC-------CCEEEEeCCCcH--hHHHHHHHHHhcCeEEEEEECCCChH-HHhccCce
Confidence 4688899984 3 33333223322 234444332332 22344555667788887777654321 111111
Q ss_pred HHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 191 VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 191 ~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
+++ ++.|.++... ....-.+.+.+++.|+.+++.+-
T Consensus 135 lV~-le~p~NPtg~-v~di~~I~~~a~~~g~~lvVD~t 170 (366)
T PRK07582 135 LVL-AETPSNPGLD-VCDLAALAAAAHAAGALLVVDNT 170 (366)
T ss_pred EEE-EECCCCCCCC-ccCHHHHHHHHHHcCCEEEEECC
Confidence 111 3455543321 12234566777778888888874
No 154
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=40.82 E-value=1.8e+02 Score=27.98 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=56.1
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChh-HHHHHH
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQ-EGIDAL 188 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~-~~~~~l 188 (338)
...-++++|.|+=....+ .-..... |..+....-.| ..-......+.+++|++...+..... +..+.+
T Consensus 77 g~~~~~afsSGmaAI~~~--~l~ll~~-------GD~vl~~~~~Y--G~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~ 145 (396)
T COG0626 77 GGEDAFAFSSGMAAISTA--LLALLKA-------GDHVLLPDDLY--GGTYRLFEKILQKFGVEVTFVDPGDDEALEAAI 145 (396)
T ss_pred CCCcEEEecCcHHHHHHH--HHHhcCC-------CCEEEecCCcc--chHHHHHHHHHHhcCeEEEEECCCChHHHHHHh
Confidence 456689999999444332 2222221 23333322222 23456788888889998877654332 233332
Q ss_pred HH--H-HHhhccCCccccCchHHHHHHHHHhhhCCCeEEEec
Q 019615 189 EE--V-IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (338)
Q Consensus 189 ~~--~-~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG 227 (338)
.+ . +-.+|+|.++.+.. .-.-.+++.|++.|+.+++..
T Consensus 146 ~~~~tk~v~lEtPsNP~l~v-~DI~~i~~~A~~~g~~vvVDN 186 (396)
T COG0626 146 KEPNTKLVFLETPSNPLLEV-PDIPAIARLAKAYGALVVVDN 186 (396)
T ss_pred cccCceEEEEeCCCCccccc-ccHHHHHHHHHhcCCEEEEEC
Confidence 21 1 11247776543321 112356777888888877754
No 155
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=39.23 E-value=56 Score=35.76 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=38.0
Q ss_pred CEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCc---EEeCCCcEEEec
Q 019615 16 KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERF---ISFPPGHIYSSK 68 (338)
Q Consensus 16 ~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i---~~l~pG~~~~~~ 68 (338)
+.+=..=||-|.||.-||.+.++.++.|||+.-+--....| -+|-||..+.++
T Consensus 422 ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 422 RYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred ceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 55666779999999977777789999999986542211111 268899987664
No 156
>PLN02360 probable 6-phosphogluconolactonase
Probab=38.78 E-value=32 Score=30.98 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=22.0
Q ss_pred CccHHHHHHHHHHHHHHhhhcCCceEEEecCcc
Q 019615 89 PYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGL 121 (338)
Q Consensus 89 ~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGl 121 (338)
++..+.+.+.+.+.++..+.....+.++||||-
T Consensus 20 ~el~~~~a~~i~~~~~~a~~~~~~~~lalsGGS 52 (268)
T PLN02360 20 DELSTDLAEYIAELSEASVKERGVFAIALSGGS 52 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 333455556666666555555678999999994
No 157
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=38.15 E-value=1.8e+02 Score=27.32 Aligned_cols=115 Identities=15% Similarity=0.099 Sum_probs=54.4
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+..... .+-++.+|+|. +++..++...... |..+.+-...+. .-....+.+++..|++...+.
T Consensus 45 le~~la~l~g--~~~a~~~~sG~--~Ai~~~l~~l~~~-------gd~Vl~~~~~y~--~~~~~~~~~~~~~g~~~~~v~ 111 (369)
T cd00614 45 LEKKLAALEG--GEAALAFSSGM--AAISTVLLALLKA-------GDHVVASDDLYG--GTYRLFERLLPKLGIEVTFVD 111 (369)
T ss_pred HHHHHHHHHC--CCCEEEEcCHH--HHHHHHHHHHcCC-------CCEEEECCCCcc--hHHHHHHHHHhhcCeEEEEeC
Confidence 3344444432 23578889997 3333333323321 233333322222 122334455677888766665
Q ss_pred eChhHHHHHHHHHHH------hhccCCccccCchHHHHHHHHHhhhCCCeEEEecCch
Q 019615 179 FTVQEGIDALEEVIY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 179 ~~~~~~~~~l~~~~~------~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
.+. .+.+++.+. .++.+.++... ....-.+.+.+++.|+.+++.+--+
T Consensus 112 ~~d---~~~l~~~i~~~~~~v~~e~~~np~g~-~~dl~~i~~la~~~g~~livD~t~~ 165 (369)
T cd00614 112 PDD---PEALEAAIKPETKLVYVESPTNPTLK-VVDIEAIAELAHEHGALLVVDNTFA 165 (369)
T ss_pred CCC---HHHHHHhcCCCCeEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECCCc
Confidence 442 222332221 12333322211 1223456677788899988877543
No 158
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=37.67 E-value=1.9e+02 Score=27.33 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=54.5
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+.+.... +-++.+++|.. .+.+++. .... |..+.+-...+. .=....+..++..|++...+.
T Consensus 52 le~~la~l~g~--~~~l~~~sG~~--al~~~l~-ll~~-------Gd~Vl~~~~~y~--~~~~~~~~~~~~~G~~v~~vd 117 (378)
T TIGR01329 52 LESLLAKLDKA--DRAFAFSSGMA--ALDVITR-LLNN-------GDEIIAGDDLYG--GTDRLLTQVVPRSGVVVVHVD 117 (378)
T ss_pred HHHHHHHHhCC--CcEEEECCHHH--HHHHHHH-HhCC-------CCEEEEcCCCch--HHHHHHHHHHHHcCcEEEEeC
Confidence 44444443332 45788899973 3444443 3322 233433222221 112234556778899888776
Q ss_pred eC-hhHHHHHHHHHHH--hhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 179 FT-VQEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 179 ~~-~~~~~~~l~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
.. .+++.+.+.+-.. .++.|.++... ....-.+++.+++.|+.+++.+-
T Consensus 118 ~~d~~~le~~i~~~tklv~le~psnptg~-v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 118 TTDLDKVKAALGPKTKLVLLESPTNPLQK-IVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCe-eecHHHHHHHHHHcCCEEEEECC
Confidence 54 2222222211000 12333322111 12334566777888888887764
No 159
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=37.39 E-value=35 Score=30.04 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASR 132 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~ 132 (338)
.+.+.+.+.+.+++.+....++.++||||--=..+...+++
T Consensus 9 ~~~~a~~i~~~i~~~i~~~~~~~lalsGGstp~~~y~~L~~ 49 (233)
T TIGR01198 9 AEALAERIATKLQTALAERGQFSLALSGGRSPIALLEALAA 49 (233)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEECCCccHHHHHHHHhh
Confidence 34455555555555555567889999999876666665554
No 160
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=37.35 E-value=2.1e+02 Score=27.15 Aligned_cols=119 Identities=19% Similarity=0.138 Sum_probs=54.5
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+.+.... +.++.+++|... +..++...... |..+.+-...+. .-....+..+..+|+....+.
T Consensus 64 le~~lA~l~g~--~~av~~~sG~~A--i~~~l~al~~~-------Gd~Vi~~~~~y~--~t~~~~~~~~~~~G~~~~~vd 130 (391)
T TIGR01328 64 LEGRIAFLEGT--EAAVATSSGMGA--IAATLLTILKA-------GDHLISDECLYG--CTFALLEHALTKFGIQVDFIN 130 (391)
T ss_pred HHHHHHHHhCC--CcEEEECCHHHH--HHHHHHHHhCC-------CCEEEEecCcch--HHHHHHHHHHhcCCeEEEEEC
Confidence 33444444332 347899999853 33222222321 233333221111 122334455677888777766
Q ss_pred eC-hhHHHHHHHHH--HHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchh
Q 019615 179 FT-VQEGIDALEEV--IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSD 231 (338)
Q Consensus 179 ~~-~~~~~~~l~~~--~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgD 231 (338)
++ .+++.+.+.+- +-.++.|.++... ....-.+.+.+++.|+.+++.+--+.
T Consensus 131 ~~d~e~l~~~i~~~tklV~le~p~Np~G~-v~dl~~I~~la~~~gi~livD~a~a~ 185 (391)
T TIGR01328 131 MAIPEEVKAHIKDNTKIVYFETPANPTMK-LIDMERVCRDAHSQGVKVIVDNTFAT 185 (391)
T ss_pred CCCHHHHHHhhccCCeEEEEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEECCCch
Confidence 54 22222222110 0012344332211 11233456667778888888766443
No 161
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=37.12 E-value=1.8e+02 Score=23.09 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=38.7
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCC-chHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l 188 (338)
....+.+|.|-|+......+..... ..+..+++++... ......+++|+..|-.+..+.-+.+++.+.+
T Consensus 100 ~~~iv~iTDG~~~~~~~~~~~~~~~---------~~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 100 RRAIVLITDGEDNSSDIEAAKALKQ---------QGITIYTVGIGSDSDANEFLQRLAEATGGRYFHVDNDPEDLDDAF 169 (172)
T ss_dssp EEEEEEEES-TTHCHHHHHHHHHHC---------TTEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE-SSSHHHHHHH
T ss_pred ceEEEEecCCCCCcchhHHHHHHHH---------cCCeEEEEEECCCccHHHHHHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 4578899999987544444444332 3455566555432 2246788888888766555533444544433
No 162
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=36.90 E-value=2.4e+02 Score=26.48 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=54.6
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+.+.... +.++.+|||.. .+..++. .... |..+.+....+.. -.......++.+|++...+.
T Consensus 57 le~~la~l~g~--~~~~~~~sG~~--ai~~~~~-ll~~-------Gd~Vl~~~~~y~~--t~~~~~~~~~~~G~~v~~vd 122 (366)
T PRK08247 57 LEQAIADLEGG--DQGFACSSGMA--AIQLVMS-LFRS-------GDELIVSSDLYGG--TYRLFEEHWKKWNVRFVYVN 122 (366)
T ss_pred HHHHHHHHhCC--CcEEEEcCHHH--HHHHHHH-HhCC-------CCEEEEecCCcCc--HHHHHHHHhhccCceEEEEC
Confidence 44444444332 34689999964 3333332 3322 2344443333332 12233456677888777765
Q ss_pred eC-hhHHHHHHHHHHH--hhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 179 FT-VQEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 179 ~~-~~~~~~~l~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
.. .+++.+.+.+-.. .++.|.++... ....-.+.+.+++.|+.+++..-
T Consensus 123 ~~d~~~l~~~i~~~tklv~le~P~NP~~~-~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 123 TASLKAIEQAITPNTKAIFIETPTNPLMQ-ETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred CCCHHHHHHhcccCceEEEEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEECC
Confidence 43 2222222211000 12445443221 12344566777788887777654
No 163
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=36.52 E-value=1.5e+02 Score=28.23 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=28.7
Q ss_pred HHhCCCceEEEeChhHHHHHHHH----HHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 168 DYLGTRHHEFHFTVQEGIDALEE----VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 168 ~~lg~~~~~v~~~~~~~~~~l~~----~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
+..|++...+..+.+++.+.+.+ ++. .+.|.+++.. ....-.+.+.+++.|+.+++..-
T Consensus 113 ~~~g~~v~~~~~d~~~l~~~i~~~~tklV~-ie~p~NPtG~-v~dl~~I~~la~~~gi~livD~t 175 (385)
T PRK08574 113 EKFGVKVVLAYPSTEDIIEAIKEGRTKLVF-IETMTNPTLK-VIDVPEVAKAAKELGAILVVDNT 175 (385)
T ss_pred hccCcEEEEECCCHHHHHHhcCccCceEEE-EECCCCCCCE-ecCHHHHHHHHHHcCCEEEEECC
Confidence 55677666555544444333321 111 2334332211 11233566777778888887554
No 164
>PRK08114 cystathionine beta-lyase; Provisional
Probab=35.89 E-value=1.8e+02 Score=27.95 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=54.2
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeC-hhHHHHHH
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT-VQEGIDAL 188 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~-~~~~~~~l 188 (338)
...-++++|.|+-....+.+ ..... |..+.+-...+. .-....+++++.+|++.+.+... .+++.+.+
T Consensus 76 g~~~a~~~~SGmaAi~~~~~--~ll~~-------GD~Vv~~~~~Yg--~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l 144 (395)
T PRK08114 76 GGAGCALYPCGAAAVANAIL--AFVEQ-------GDHVLMTGTAYE--PTQDFCSKILSKLGVTTTWFDPLIGADIAKLI 144 (395)
T ss_pred CCCeEEEEhHHHHHHHHHHH--HHcCC-------CCEEEEeCCCcH--HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhc
Confidence 34578899999855543332 22322 234443322221 23345567788899988877643 22332222
Q ss_pred HH---HHHhhccCCccccCchHHHHHHHHHhhhC--CCeEEEecC
Q 019615 189 EE---VIYHIETYDVTTIRASTPMFLMSRKIKSL--GVKMVISGE 228 (338)
Q Consensus 189 ~~---~~~~~e~~~~~~~~~~~~~~~l~~~a~~~--g~~vvltG~ 228 (338)
.+ ++ .+|.+.++... -...-.+++.+++. |+.+++.+-
T Consensus 145 ~~~TrlV-~~EtpsNp~~~-v~DI~~Ia~ia~~~g~g~~lvVDnT 187 (395)
T PRK08114 145 QPNTKVV-FLESPGSITME-VHDVPAIVAAVRSVNPDAVIMIDNT 187 (395)
T ss_pred CCCceEE-EEECCCCCCCE-eecHHHHHHHHHHhCCCCEEEEECC
Confidence 21 11 13444433211 12334567777776 488888765
No 165
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=35.07 E-value=2.4e+02 Score=26.99 Aligned_cols=117 Identities=17% Similarity=0.107 Sum_probs=53.1
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+..... .+-++.+|+|. .++..++...... |..+...+..+. .-....+.+++..|++...+.
T Consensus 65 Le~~lA~l~g--~~~~v~~~sG~--~Ai~~~l~all~p-------GD~Vvv~~p~Y~--~t~~~~~~~~~~~g~~v~~v~ 131 (405)
T PRK08776 65 LGEALAELEG--GAGGVITATGM--GAINLVLNALLQP-------GDTLVVPHDAYG--GSWRLFNALAKKGHFALITAD 131 (405)
T ss_pred HHHHHHHHhC--CCceEEEcCHH--HHHHHHHHHHhCC-------CCEEEEccCCch--HHHHHHHHHHHhcCcEEEEEC
Confidence 4444444332 24578999995 4444444333322 234444322222 112233455666777666654
Q ss_pred eC-hhHHHHHHHH---HHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCch
Q 019615 179 FT-VQEGIDALEE---VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 179 ~~-~~~~~~~l~~---~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
.. .+++.+.+.+ ++ .++.|.++... ....-.+.+.+++.|+.+++..--+
T Consensus 132 ~~d~~~l~~~i~~~tklV-~l~~P~NPtG~-v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 132 LTDPRSLADALAQSPKLV-LIETPSNPLLR-ITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCCHHHHHHhcCcCCeEE-EEECCCCCCCc-cCCHHHHHHHHHHcCCEEEEECCCc
Confidence 42 2222222211 11 12334332211 1123346666777788888766543
No 166
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=33.85 E-value=2.2e+02 Score=27.52 Aligned_cols=116 Identities=12% Similarity=0.048 Sum_probs=53.1
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+..... .+-++..|+|...... ++.. .... |..+.+....+.. -......+++..|++...+.
T Consensus 69 Le~~lA~leg--~~~al~~~sG~~Ai~~-al~~-ll~~-------GD~Vlv~~~~y~~--t~~~~~~~~~~~Gv~v~~vd 135 (431)
T PRK08248 69 FEKRIAALEG--GIGALAVSSGQAAITY-SILN-IASA-------GDEIVSSSSLYGG--TYNLFAHTLPKLGITVKFVD 135 (431)
T ss_pred HHHHHHHHhC--CCcEEEECCHHHHHHH-HHHH-HhCC-------CCEEEEccCchhh--HHHHHHHHHHhCCEEEEEEC
Confidence 4444554432 4578999999843332 3322 2221 2334433322221 22344566778888877765
Q ss_pred eC-hhHHHHHHHHHHH--hhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 179 FT-VQEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 179 ~~-~~~~~~~l~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
.. .+++.+.+.+-.. ..+.|.+++.. ....-.+.+.+++.|+.+++.+-
T Consensus 136 ~~d~e~l~~ai~~~tklV~l~sp~NPtG~-v~di~~I~~la~~~gi~vIvD~t 187 (431)
T PRK08248 136 PSDPENFEAAITDKTKALFAETIGNPKGD-VLDIEAVAAIAHEHGIPLIVDNT 187 (431)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEeCC
Confidence 43 2222222211000 01333322110 11223456667777877776543
No 167
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=33.64 E-value=3.7e+02 Score=24.47 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhhcCCc-eEE-EecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhC
Q 019615 94 VLRKAFEKAVVKRLMTDVP-FGV-LLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG 171 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~-v~v-~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg 171 (338)
...+.+++.+.+.+..+.. +.+ ..+|| |..+.+++...... +..+...+-+.- .. ....+++.+|
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~g--t~~l~~~~~~~~~~-------~~~vi~~~~~~~--~~--~~~~~a~~~g 97 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSG--TFAVEATIGSLVPR-------DGKLLVLINGAY--GE--RLAKICEYLG 97 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCc--HHHHHHHHHhccCC-------CCeEEEECCCch--hh--HHHHHHHHcC
Confidence 3444555566665554332 334 56677 44444444444321 122333222211 11 1245678899
Q ss_pred CCceEEEeChhH--HHHHHHHHHHhhcc------CCc-cccCchHHHHHHHHHhhhCCCeEEEec
Q 019615 172 TRHHEFHFTVQE--GIDALEEVIYHIET------YDV-TTIRASTPMFLMSRKIKSLGVKMVISG 227 (338)
Q Consensus 172 ~~~~~v~~~~~~--~~~~l~~~~~~~e~------~~~-~~~~~~~~~~~l~~~a~~~g~~vvltG 227 (338)
.++..+.++... -.+.+++.+..... ... +......+.-.+.+.+++.|+-+++.+
T Consensus 98 ~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~ 162 (355)
T TIGR03301 98 IPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDA 162 (355)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEe
Confidence 998888764311 12334443321100 000 000011234456677778888888875
No 168
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=32.67 E-value=2.6e+02 Score=26.60 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+.+....+ -++.+|||......+..+ .... |..+.+-...+. .-.......++.+|++...+.
T Consensus 66 le~~la~l~g~~--~~v~~ssG~~Ai~~al~a--l~~~-------Gd~Vi~~~~~y~--~t~~~~~~~~~~~G~~v~~vd 132 (390)
T PRK08133 66 FQERLAALEGAE--ACVATASGMAAILAVVMA--LLQA-------GDHVVSSRSLFG--STVSLFEKIFARFGIETTFVD 132 (390)
T ss_pred HHHHHHHHhCCC--cEEEECCHHHHHHHHHHH--HhCC-------CCEEEEccCcch--hHHHHHHHHHHHcCcEEEEEC
Confidence 344444444332 368899998655433222 2221 233433222221 122334456677898877776
Q ss_pred eCh-hHHHHHHHHHHH--hhccCCccccCchHHHHHHHHHhhhCCCeEEEec
Q 019615 179 FTV-QEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (338)
Q Consensus 179 ~~~-~~~~~~l~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG 227 (338)
++. +++.+.+.+-.. ..+.|.++... ....-.+.+.+++.|+.+++..
T Consensus 133 ~~d~~~l~~~i~~~tklV~ie~p~NptG~-v~dl~~I~~la~~~gi~livD~ 183 (390)
T PRK08133 133 LTDLDAWRAAVRPNTKLFFLETPSNPLTE-LADIAALAEIAHAAGALLVVDN 183 (390)
T ss_pred CCCHHHHHHhcCcCCeEEEEECCCCCCCC-cCCHHHHHHHHHHcCCEEEEEC
Confidence 542 222222211000 11334332211 1223456667777888887765
No 169
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=32.32 E-value=16 Score=29.76 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=21.5
Q ss_pred EccCCCcceEEEEecCCeEEEecccchh
Q 019615 22 RDAIGVTPLYMGWGLDGSIWFASEMKAL 49 (338)
Q Consensus 22 rD~~G~~pLyy~~~~~~~~~faSe~~~l 49 (338)
.|++|+|||.|-..+.+.-+|+.++..+
T Consensus 2 ~dk~gRr~llYLl~~~d~~~f~p~~i~~ 29 (148)
T PF08144_consen 2 NDKYGRRVLLYLLSPRDPRYFSPEIIKL 29 (148)
T ss_pred CCccCceeeeeeccCCCcccCCHHHHHH
Confidence 5899999998887666777887665444
No 170
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=31.22 E-value=4.3e+02 Score=24.54 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhcCCceE-EEecCcccHHHHHHHHHHH---hchhhhhhhcCCCcceeeccCCCCchHHHHHHHHH
Q 019615 93 LVLRKAFEKAVVKRLMTDVPFG-VLLSGGLDSSLVAAVASRY---LADSEAACQWGSQLHSFCIGLEGSPDLKAAREVAD 168 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~-v~LSGGlDSs~iaa~~~~~---~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~ 168 (338)
.++.+..++.+.+-+....+-. ++.+|+-. .+-.++... ..+ +..+.+.+.+++ ........+++
T Consensus 42 ~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~--a~~~~~~~l~~~~~~-------g~~vl~~~~~~~--s~~~~~~~~~~ 110 (371)
T PF00266_consen 42 AEILEEAREALAKLLGAPPDEEVVFTSNGTE--ALNAVASSLLNPLKP-------GDEVLVTSNEHP--SNRYPWEEIAK 110 (371)
T ss_dssp HHHHHHHHHHHHHHHTSSTTEEEEEESSHHH--HHHHHHHHHHHHGTT-------TCEEEEEESSHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCccccccccccccch--hhhhhhhcccccccc-------cccccccccccc--ccccccccccc
Confidence 3444555566666665544233 44555543 444444333 221 245555554443 34556778888
Q ss_pred HhCCCceEEEeChhHH--HHHHHHHHHhhccCCc---cccC----chHHHHHHHHHhhhCCCeEEEecCc
Q 019615 169 YLGTRHHEFHFTVQEG--IDALEEVIYHIETYDV---TTIR----ASTPMFLMSRKIKSLGVKMVISGEG 229 (338)
Q Consensus 169 ~lg~~~~~v~~~~~~~--~~~l~~~~~~~e~~~~---~~~~----~~~~~~~l~~~a~~~g~~vvltG~G 229 (338)
..|.+...+..+.+.. .+.+.+.+. +.+.. +.+. ...+.-.+++.+++.|+-+++.|-.
T Consensus 111 ~~g~~v~~i~~~~~~~~~~~~~~~~l~--~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~ 178 (371)
T PF00266_consen 111 RKGAEVRVIPADPGGSLDLEDLEEALN--PDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQ 178 (371)
T ss_dssp HTTEEEEEEEEGTTSSCSHHHHHHHHH--TTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TT
T ss_pred cchhhhccccccccchhhhhhhhhhhc--cccceEEeecccccccEEeeeceehhhhhccCCceeEechh
Confidence 9999988887754321 233444432 11110 0010 1123456677788889999988863
No 171
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=31.20 E-value=1.9e+02 Score=25.92 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=30.1
Q ss_pred EEEec----CcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHHhCCCceE
Q 019615 114 GVLLS----GGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHE 176 (338)
Q Consensus 114 ~v~LS----GGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~lg~~~~~ 176 (338)
++.+| +|.|+...+..++....+. +.++.. .|.. +.+-....-.+|+.||+++..
T Consensus 84 avli~d~~~~g~D~~~tA~~La~ai~~~------~~DLVl--~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 84 LIVVIDDQFEQALPQQTASALAAAAQKA------GFDLIL--CGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred EEEEecCcccCcCHHHHHHHHHHHHHHh------CCCEEE--EcCccccCCCCcHHHHHHHHhCCCcee
Confidence 55555 5678888777777665421 112221 2222 122234566788888887654
No 172
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=29.62 E-value=3.8e+02 Score=25.37 Aligned_cols=102 Identities=13% Similarity=0.173 Sum_probs=48.5
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEV 191 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~ 191 (338)
+-++.++||......+ +.....+ |..+.+....+. .-...+....+.+|++...+..... +.+++.
T Consensus 66 ~~~~~~~sG~~Ai~~a--l~all~~-------GD~Vl~~~~~y~--~t~~~~~~~~~~~gi~v~~~d~~~~---e~l~~~ 131 (377)
T TIGR01324 66 AGCYLYPSGLAAVTNS--ILAFVKA-------GDHVLMVDSAYE--PTRYFCDIVLKRMGVDITYYDPLIG---EDIATL 131 (377)
T ss_pred CcEEEECcHHHHHHHH--HHHhcCC-------CCEEEEcCCCcH--HHHHHHHHHHHhcCcEEEEECCCCH---HHHHHh
Confidence 3577899996544333 2222322 234433322222 1123344556777887665543321 233332
Q ss_pred HHh------hccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 192 IYH------IETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 192 ~~~------~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
+.. ++.|.++... ....-.+++.+++.|+.+++..-
T Consensus 132 i~~~tklV~lesp~Np~g~-~~dl~~I~~la~~~g~~livD~t 173 (377)
T TIGR01324 132 IQPNTKVLFLEAPSSITFE-IQDIPAIAKAARNPGIVIMIDNT 173 (377)
T ss_pred cCCCceEEEEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEECC
Confidence 211 1333332211 12334567777888888887655
No 173
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.07 E-value=2.4e+02 Score=27.38 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=49.6
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHH
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVI 192 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~ 192 (338)
-+++.|+|.....++..+. ... |..+.+-...+. .-.......++.+|++...+.++. .+.+++.+
T Consensus 81 ~av~~sSGt~Al~~al~~l--l~~-------Gd~Vi~~~~~y~--~t~~~~~~~l~~~Gi~v~~vd~~d---~~~l~~~i 146 (433)
T PRK08134 81 GAIATASGQAALHLAIATL--MGA-------GSHIVASSALYG--GSHNLLHYTLRRFGIETTFVKPGD---IDGWRAAI 146 (433)
T ss_pred cEEEeCCHHHHHHHHHHHH--hCC-------CCEEEEeCCccH--HHHHHHHHHHhhCCeEEEEECCCC---HHHHHHhc
Confidence 3699999987766554332 221 234444333222 112233334567888777766541 22233322
Q ss_pred Hh------hccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 193 YH------IETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 193 ~~------~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
.. .+.+.++.. ....+-.+++.+++.|+.+++.+-
T Consensus 147 ~~~TklV~~e~~~np~g-~v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 147 RPNTRLLFGETLGNPGL-EVLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred CCCCeEEEEECCCcccC-cccCHHHHHHHHHHcCCEEEEECC
Confidence 11 122322110 012234567777788888887654
No 174
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=28.96 E-value=4.1e+02 Score=25.37 Aligned_cols=116 Identities=15% Similarity=0.075 Sum_probs=53.4
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+..... .+-++.+|+|+..... ++.. .... |..+.+-...+. .-.......++..|++...+.
T Consensus 75 le~~lA~l~g--~~~al~~~sG~~Ai~~-~l~a-ll~~-------Gd~Vl~~~~~~~--~t~~~~~~~~~~~G~~v~~vd 141 (403)
T PRK07810 75 FEERLRLIEG--AEACFATASGMSAVFT-ALGA-LLGA-------GDRLVAARSLFG--SCFVVCNEILPRWGVETVFVD 141 (403)
T ss_pred HHHHHHHHhC--CCcEEEECChHHHHHH-HHHH-HhCC-------CCEEEEccCCcc--hHHHHHHHHHHHcCcEEEEEC
Confidence 3344444332 3468999999955433 2222 2221 233333221121 223344566777888877765
Q ss_pred eCh-hHHHHHHHHHHH--hhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 179 FTV-QEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 179 ~~~-~~~~~~l~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
... +++.+.+.+-.. .++.|.++... ....-.+.+.+++.|+.+++..-
T Consensus 142 ~~d~~~l~~ai~~~tklV~~esp~Nptg~-v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 142 GEDLSQWEEALSVPTQAVFFETPSNPMQS-LVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECC
Confidence 432 222222211000 12344432211 11233566667777888777544
No 175
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=28.89 E-value=1.2e+02 Score=26.01 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=21.9
Q ss_pred HHHHHHhhhCCCeEEEecCchh---hcccCCc
Q 019615 210 FLMSRKIKSLGVKMVISGEGSD---EIFGGYL 238 (338)
Q Consensus 210 ~~l~~~a~~~g~~vvltG~GgD---elf~Gy~ 238 (338)
+.+.+.+...|+.|++.|.--| |+|.|-+
T Consensus 100 ~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~ 131 (201)
T COG1435 100 YVLNELADRLGIPVICYGLDTDFRGEPFEGSK 131 (201)
T ss_pred HHHHHHHhhcCCEEEEeccccccccCCCccHH
Confidence 5566777667999999998777 5666544
No 176
>PRK06767 methionine gamma-lyase; Provisional
Probab=28.48 E-value=2.9e+02 Score=26.16 Aligned_cols=107 Identities=10% Similarity=0.061 Sum_probs=48.0
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeC-hhHHHHHHHH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT-VQEGIDALEE 190 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~-~~~~~~~l~~ 190 (338)
+-++.+++|.. . +.+++...... |..+.+-...+ ..........++..|++...+... .+++.+.+.+
T Consensus 77 ~~al~~~sG~~-A-i~~~l~al~~~-------Gd~Vv~~~~~y--~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~ 145 (386)
T PRK06767 77 EEALAFGSGMA-A-ISATLIGFLKA-------GDHIICSNGLY--GCTYGFLEVLEEKFMITHSFCDMETEADIENKIRP 145 (386)
T ss_pred CcEEEECCHHH-H-HHHHHHHHhCC-------CCEEEEcCCcH--HHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCc
Confidence 35788999974 3 33333222321 23333321111 122334445566677765554432 2232222211
Q ss_pred HH--HhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCch
Q 019615 191 VI--YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 191 ~~--~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
-. -.++.|.+++.. ....-.+.+.+++.|+.+++.+--+
T Consensus 146 ~tklV~lesp~NptG~-v~dl~~I~~la~~~g~~vivD~a~a 186 (386)
T PRK06767 146 NTKLIFVETPINPTMK-LIDLKQVIRVAKRNGLLVIVDNTFC 186 (386)
T ss_pred CceEEEEeCCCCCCce-ecCHHHHHHHHHHcCCEEEEECCCc
Confidence 00 012344433211 1223345666777888888876543
No 177
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=28.19 E-value=80 Score=27.38 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHH
Q 019615 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASR 132 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~ 132 (338)
.+.+.+.+.++..+.....+.+.||||--=..+...+.+
T Consensus 6 ~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~ 44 (219)
T cd01400 6 ALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAA 44 (219)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEECCCccHHHHHHHhcc
Confidence 334444444444444446789999999877766665554
No 178
>PRK07503 methionine gamma-lyase; Provisional
Probab=27.73 E-value=3.1e+02 Score=26.17 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=48.9
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeC-hhHHHHHHHH-
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT-VQEGIDALEE- 190 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~-~~~~~~~l~~- 190 (338)
-++.+|+|.+...++ +...... |..+.+-...+. .-.......++..|++...+.++ ++++.+.+.+
T Consensus 82 ~~i~~~sG~~Al~~~--l~~ll~~-------Gd~Viv~~~~y~--~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~ 150 (403)
T PRK07503 82 AAVALASGMGAITAT--LWTLLRP-------GDEVIVDQTLYG--CTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDK 150 (403)
T ss_pred cEEEEcCHHHHHHHH--HHHHcCC-------CCEEEEccCccc--hHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCcc
Confidence 368999998643222 2222322 233433222121 12223345567788877776653 2232222211
Q ss_pred --HHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCc
Q 019615 191 --VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (338)
Q Consensus 191 --~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~G 229 (338)
+++ .+.|.++... ....-.+.+.+++.|+.+++..--
T Consensus 151 tklV~-le~p~NPtG~-~~di~~I~~la~~~gi~lIvD~a~ 189 (403)
T PRK07503 151 TRMVY-FETPANPNMR-LVDIAAVAEIAHGAGAKVVVDNTY 189 (403)
T ss_pred CcEEE-EeCCCCCCCe-eeCHHHHHHHHHHcCCEEEEECCC
Confidence 111 1334332211 122345667777788888877643
No 179
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=27.59 E-value=2.5e+02 Score=26.83 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=14.8
Q ss_pred HHHHHHhhhCCCeEEEecCch
Q 019615 210 FLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 210 ~~l~~~a~~~g~~vvltG~Gg 230 (338)
-.+.+.+++.|+.+++..--+
T Consensus 169 ~~I~~la~~~gi~livD~t~a 189 (398)
T PRK08249 169 ERLAAAAKKVGALVVVDNTFA 189 (398)
T ss_pred HHHHHHHHHcCCEEEEECCcC
Confidence 346677778888888776644
No 180
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=27.30 E-value=23 Score=30.46 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=9.8
Q ss_pred CCCCCCCcccce
Q 019615 322 KQPYLPKVSHFL 333 (338)
Q Consensus 322 ~~~~lP~~i~~~ 333 (338)
|+|.||+.|+|+
T Consensus 68 Kap~lp~DI~WH 79 (244)
T KOG3157|consen 68 KAPLLPDDIKWH 79 (244)
T ss_pred hcccCcccceee
Confidence 457899999997
No 181
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.93 E-value=2.8e+02 Score=26.92 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=55.6
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+.... ...-++.+++|+....++.++. ..+ |..+.+-...+.. -..........+|++...+.
T Consensus 66 lE~~la~le--g~~~av~~~SG~aAi~~al~al--l~~-------GD~VI~~~~~Y~~--T~~~~~~~l~~~Gi~v~~vd 132 (432)
T PRK06702 66 FEQKLAELE--GGVGAVATASGQAAIMLAVLNI--CSS-------GDHLLCSSTVYGG--TFNLFGVSLRKLGIDVTFFN 132 (432)
T ss_pred HHHHHHHHh--CCCcEEEECCHHHHHHHHHHHh--cCC-------CCEEEECCCchHH--HHHHHHHHHHHCCCEEEEEC
Confidence 444444432 2345789999997765544322 222 2344443322221 12233444678898877776
Q ss_pred eC--hhHHHHHHHH---HHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEec
Q 019615 179 FT--VQEGIDALEE---VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (338)
Q Consensus 179 ~~--~~~~~~~l~~---~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG 227 (338)
+. ++++.+.+.+ .++ .+.|.++... ...+-.+++.|++.|+.++..-
T Consensus 133 ~~~d~~~l~~~I~~~Tk~I~-~e~pgnP~~~-v~Di~~I~~iA~~~gi~livD~ 184 (432)
T PRK06702 133 PNLTADEIVALANDKTKLVY-AESLGNPAMN-VLNFKEFSDAAKELEVPFIVDN 184 (432)
T ss_pred CCCCHHHHHHhCCcCCeEEE-EEcCCCcccc-ccCHHHHHHHHHHcCCEEEEEC
Confidence 53 2332222211 111 2444433211 0123456677777888777765
No 182
>PF09938 DUF2170: Uncharacterized protein conserved in bacteria (DUF2170); InterPro: IPR019231 This family of various hypothetical prokaryotic proteins has no known function.
Probab=26.34 E-value=2.9e+02 Score=22.31 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=33.3
Q ss_pred eeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEec
Q 019615 4 GMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFAS 44 (338)
Q Consensus 4 G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faS 44 (338)
|.|.+...+.....|.+--.-+|--|+|.+.. +.++++.+
T Consensus 22 ~~~~~~~i~g~~~~L~v~~~~~gdlpi~vavs-~~QIlv~t 61 (140)
T PF09938_consen 22 GEIDCEVIEGEEPVLQVTMNDYGDLPIFVAVS-GEQILVET 61 (140)
T ss_pred CceeEEecCCCCCEEEEEecCCCCccEEEEEe-CCEEEEEE
Confidence 56677777777889999999999999999986 77887765
No 183
>PRK05939 hypothetical protein; Provisional
Probab=25.88 E-value=4.4e+02 Score=25.15 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=52.2
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+.+.. ....++.+|.|+ +++.+++...... |..+.+.+..+... .... ..++.+|++...+.
T Consensus 52 lE~~la~le--g~~~~v~~ssG~--~Ai~~~l~all~~-------Gd~Vv~~~~~y~~t--~~~~-~~l~~~G~~v~~v~ 117 (397)
T PRK05939 52 LEAKITKME--GGVGTVCFATGM--AAIAAVFLTLLRA-------GDHLVSSQFLFGNT--NSLF-GTLRGLGVEVTMVD 117 (397)
T ss_pred HHHHHHHHh--CCCeEEEeCCHH--HHHHHHHHHHcCC-------CCEEEECCCccccH--HHHH-HHHHhcCCEEEEEC
Confidence 444444432 234578899896 4444444333322 23454433323221 1122 23567888777765
Q ss_pred eChhHHHHHHHHHHHh------hccCCccccCchHHHHHHHHHhhhCCCeEEEec
Q 019615 179 FTVQEGIDALEEVIYH------IETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (338)
Q Consensus 179 ~~~~~~~~~l~~~~~~------~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG 227 (338)
... .+.+++.+.. .+.|.+++.. ....-.+.+.+++.|+.+++.+
T Consensus 118 ~~d---~e~l~~~l~~~tklV~vesp~NptG~-v~dl~~I~~la~~~gi~livD~ 168 (397)
T PRK05939 118 ATD---VQNVAAAIRPNTRMVFVETIANPGTQ-VADLAGIGALCRERGLLYVVDN 168 (397)
T ss_pred CCC---HHHHHHhCCCCCeEEEEECCCCCCCC-HHhHHHHHHHHHHcCCEEEEEC
Confidence 431 1223332211 1333322111 1233456677778888888766
No 184
>PRK09028 cystathionine beta-lyase; Provisional
Probab=25.59 E-value=4.7e+02 Score=25.02 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=50.4
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeCh-hHHHHHHHHH
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTV-QEGIDALEEV 191 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~-~~~~~~l~~~ 191 (338)
-++.++||......+..+ .... |..+.+.+-.+. .-........+.+|++...+..+. +++.+.+.+-
T Consensus 78 ~~~~~~sG~~Ai~~~l~a--ll~~-------GD~Vvv~~~~Y~--~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~ 146 (394)
T PRK09028 78 GTALYPSGAAAISNALLS--FLKA-------GDHLLMVDSCYE--PTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPN 146 (394)
T ss_pred cEEEECCHHHHHHHHHHH--HhCC-------CCEEEEECCCcH--HHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcC
Confidence 467999998765443322 2222 244554433332 122334455567888776654332 2222222110
Q ss_pred H--HhhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 192 I--YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 192 ~--~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
. -.++.|.+++.. ....-.+++.+++.|+.+++..-
T Consensus 147 TklV~lespsNPtg~-v~dl~~I~~la~~~g~~lvvD~t 184 (394)
T PRK09028 147 TKVLFLESPGSITME-VQDVPTLSRIAHEHDIVVMLDNT 184 (394)
T ss_pred ceEEEEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEECC
Confidence 0 012445443321 12344567778888888776543
No 185
>PRK08064 cystathionine beta-lyase; Provisional
Probab=25.47 E-value=3.5e+02 Score=25.63 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=50.1
Q ss_pred eEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHH
Q 019615 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVI 192 (338)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~ 192 (338)
-++.+|-|+.. +.+.+. .... |..+.+....+. .-......+++..|++...+.+.. .+.+.+.+
T Consensus 71 ~~v~~~sG~~a--i~~~l~-~l~~-------Gd~Vlv~~~~y~--~~~~~~~~~~~~~G~~v~~v~~~d---~~~l~~~l 135 (390)
T PRK08064 71 KGFAFASGMAA--ISTAFL-LLSK-------GDHVLISEDVYG--GTYRMITEVLSRFGIEHTFVDMTN---LEEVAQNI 135 (390)
T ss_pred CeEEECCHHHH--HHHHHH-HhCC-------CCEEEEccCccc--hHHHHHHHHHHHcCCEEEEECCCC---HHHHHHhc
Confidence 36788999753 333332 3322 234444332222 123344566778899888876532 22233222
Q ss_pred H------hhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 193 Y------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 193 ~------~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
. .++.|.+++.. ....-.+.+.+++.|+.+++.+-
T Consensus 136 ~~~tklV~l~~p~NptG~-~~dl~~I~~la~~~g~~vvvD~a 176 (390)
T PRK08064 136 KPNTKLFYVETPSNPLLK-VTDIRGVVKLAKAIGCLTFVDNT 176 (390)
T ss_pred CCCceEEEEECCCCCCcE-eccHHHHHHHHHHcCCEEEEECC
Confidence 1 12334332211 12234566777788888888765
No 186
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=25.27 E-value=1.1e+02 Score=26.91 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHH
Q 019615 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASR 132 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~ 132 (338)
+.+.+.+.+.++ ....+.++||||-==..+...+++
T Consensus 14 ~~~a~~i~~~i~----~~~~~~l~lsgGstP~~~y~~L~~ 49 (232)
T PRK09762 14 ERASEYLLAVIR----SKPDAVICLATGATPLLTYHYLVE 49 (232)
T ss_pred HHHHHHHHHHHH----HCCCeEEEECCCCCHHHHHHHHHH
Confidence 344444444444 346789999999866666666654
No 187
>PRK07050 cystathionine beta-lyase; Provisional
Probab=24.34 E-value=5.2e+02 Score=24.54 Aligned_cols=113 Identities=11% Similarity=0.090 Sum_probs=57.6
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++.+..... ..-++..+||.....++..+- ... |..+.+....+... .......++.+|++...+.
T Consensus 70 Le~~lA~l~g--~~~~l~~~sgt~Ai~~~l~al--~~~-------GD~Vl~~~~~y~~~--~~~~~~~~~~~Gi~v~~vd 136 (394)
T PRK07050 70 LAQRLAEIEG--GRHALLQPSGLAAISLVYFGL--VKA-------GDDVLIPDNAYGPN--RDHGEWLARDFGITVRFYD 136 (394)
T ss_pred HHHHHHHHhC--CCeEEEeccHHHHHHHHHHHH--hCC-------CCEEEEecCCcccH--HHHHHHHHHhcCeEEEEEC
Confidence 4444444333 335778899987765544332 221 24454444333321 2234556788898777664
Q ss_pred eChhHHHHHHHHHHH------hhccCCccccCchHHHHHHHHHhhhCCCeEEEecC
Q 019615 179 FTVQEGIDALEEVIY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 179 ~~~~~~~~~l~~~~~------~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~ 228 (338)
.... +.+++.+. .++.|.++... ....-.+++.+++.|+.+++.+-
T Consensus 137 ~~~~---~~l~~~i~~~tklV~le~p~Np~~~-~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 137 PLIG---AGIADLIQPNTRLIWLEAPGSVTME-VPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred CCCH---HHHHHhcCCCCeEEEEECCCCCCcc-HhhHHHHHHHHHHcCCEEEEECC
Confidence 3221 22332221 12344433221 12334567778888888888765
No 188
>PF00274 Glycolytic: Fructose-bisphosphate aldolase class-I; InterPro: IPR000741 Fructose-bisphosphate aldolase (4.1.2.13 from EC) [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms: class I enzymes [] do not require a metal ion, and are characterised by the formation of a Schiff base intermediate between a highly conserved active site lysine and a substrate carbonyl group, while the class II enzymes require an active-site divalent metal ion. This entry represents the class I enzymes. In vertebrates, three forms of this enzyme are found: aldolase A is expressed in muscle, aldolase B in liver, kidney, stomach and intestine, and aldolase C in brain, heart and ovary. The different isozymes have different catalytic functions: aldolases A and C are mainly involved in glycolysis, while aldolase B is involved in both glycolysis and gluconeogenesis. Defects in aldolase B result in hereditary fructose intolerance.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis; PDB: 1EX5_B 6ALD_D 2QUU_B 3DFN_B 1ADO_B 3DFO_A 1ZAL_A 1J4E_C 3DFP_A 1ZAJ_B ....
Probab=24.30 E-value=2.2e+02 Score=26.79 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHhhhcCCceEEEecCcccH
Q 019615 91 DPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDS 123 (338)
Q Consensus 91 ~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDS 123 (338)
..+++...=-++.++.+...+|-.++||||..-
T Consensus 230 ~~~~vA~~T~~~l~~~vP~aVpgIvFLSGGqs~ 262 (348)
T PF00274_consen 230 SPEEVAEATVRALRRTVPAAVPGIVFLSGGQSE 262 (348)
T ss_dssp -HHHHHHHHHHHHHHHSBTTSSEEEEB-TTS-H
T ss_pred CHHHHHHHHHHHHHHhcccccceeEecCCCCCH
Confidence 356666666677788888889999999999854
No 189
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=23.50 E-value=2.6e+02 Score=23.59 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=9.5
Q ss_pred CCEEEEEEccCCCc
Q 019615 15 DKSFIAARDAIGVT 28 (338)
Q Consensus 15 ~~~l~l~rD~~G~~ 28 (338)
...+.++=|..|..
T Consensus 20 ~~~vv~vlD~SgSM 33 (206)
T cd01456 20 PPNVAIVLDNSGSM 33 (206)
T ss_pred CCcEEEEEeCCCCC
Confidence 35577777877754
No 190
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=23.29 E-value=1.6e+02 Score=26.13 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=30.7
Q ss_pred CccHHHHHHHHHHHHHH-hhhcCCceEEEecCcccHHHHHHHHHHH
Q 019615 89 PYDPLVLRKAFEKAVVK-RLMTDVPFGVLLSGGLDSSLVAAVASRY 133 (338)
Q Consensus 89 ~~~~~~l~~~l~~av~~-rl~~~~~v~v~LSGGlDSs~iaa~~~~~ 133 (338)
++..+.+.+.+.+.+.. .+....+..++||||-.=.-+...+++.
T Consensus 10 ~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgG~tP~~~y~~L~~~ 55 (253)
T PTZ00285 10 DAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRA 55 (253)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCeEEEEcCCCCHHHHHHHHHHH
Confidence 33445666666666665 4455678999999998877776666654
No 191
>PRK06460 hypothetical protein; Provisional
Probab=23.27 E-value=5e+02 Score=24.43 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhC
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG 171 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg 171 (338)
.+++++.+. +.... +.++.+++|.. ++..++...... |..+..-+-.+. .-...-...++..|
T Consensus 47 ~~~L~~~lA----~l~g~--~~~v~~~sG~~--ai~~~l~al~~~-------Gd~Vl~~~~~~~--~ty~~~~~~~~~~G 109 (376)
T PRK06460 47 VLELTKKIV----ELENA--EMGVAFSSGMG--AISTTALALLKP-------GNSVLVHRDMFG--RSYRFFTDYLKNWG 109 (376)
T ss_pred HHHHHHHHH----HHhCC--CcEEEeCCHHH--HHHHHHHHHhCC-------CCEEEEecCCcC--cHHHHHHHHHHhhC
Confidence 445555553 33322 34678899973 444433333322 233433211111 12233345677788
Q ss_pred CCceEEEeChhHHHHHHH-H-H-HHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCc
Q 019615 172 TRHHEFHFTVQEGIDALE-E-V-IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (338)
Q Consensus 172 ~~~~~v~~~~~~~~~~l~-~-~-~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~G 229 (338)
.+...+..+.++.++.+. + . +-.++.|.+++.. ....-.+.+.+++.|+.+++..--
T Consensus 110 ~~v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~-v~d~~~I~~la~~~g~~vivDea~ 169 (376)
T PRK06460 110 VNVDASNPGSDNIIEKAKSKRYDVVFVENITNPLLR-VVDITELSKVCKENGSILIVDATF 169 (376)
T ss_pred cEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEECCc
Confidence 876665544333332221 0 0 0012334332211 112234566667778777766543
No 192
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=23.14 E-value=5.9e+02 Score=23.44 Aligned_cols=127 Identities=12% Similarity=0.103 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHh-chhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhC
Q 019615 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYL-ADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG 171 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg 171 (338)
..+.+.+.+.+.+.+..+...++..+||..+..++..+.... .... -|..+.+-..++ . . -.+.++..|
T Consensus 58 ~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~g~~vl~~~~~h---~--~-~~~~~~~~G 127 (373)
T TIGR03812 58 KKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEK----RTPNIIVPESAH---F--S-FEKAAEMLG 127 (373)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccC----CCcEEEECCcch---H--H-HHHHHHHcC
Confidence 345556667777766655555678888865544433222111 0000 011222211111 1 1 234577889
Q ss_pred CCceEEEeChhH--HHHHHHHHHHhhc------cCCccccCchHHHHHHHHHhhhCCCeEEEecCch
Q 019615 172 TRHHEFHFTVQE--GIDALEEVIYHIE------TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 172 ~~~~~v~~~~~~--~~~~l~~~~~~~e------~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
.+...+..+... -.+.+.+.+.... .+..++ ....+.-.+.+.+++.|+.+++.|--+
T Consensus 128 ~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~t-G~~~~~~~i~~l~~~~~~~livD~a~~ 193 (373)
T TIGR03812 128 LELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTEL-GQIDDIEELSKIALENGIYLHVDAAFG 193 (373)
T ss_pred CeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCC-CccCCHHHHHHHHHHcCCeEEEEcCch
Confidence 888877754211 1223333221100 011100 001123345666777788888888654
No 193
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=22.82 E-value=93 Score=27.63 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHh
Q 019615 91 DPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYL 134 (338)
Q Consensus 91 ~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~ 134 (338)
..+.+.+.+.+--..-+..++...+.|||| |++-++.....
T Consensus 20 l~~~l~~~~~~~s~~~~~~~g~F~i~lSGG---SLi~~L~~~l~ 60 (252)
T KOG3147|consen 20 LIEALAGYIAEKSEKALKKRGRFTLALSGG---SLIQVLSKLLE 60 (252)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcCC---cHHHHHHHHhc
Confidence 344455444444444455677899999999 56666655543
No 194
>PLN02409 serine--glyoxylate aminotransaminase
Probab=22.38 E-value=6.7e+02 Score=23.72 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhhcCC-ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhC
Q 019615 93 LVLRKAFEKAVVKRLMTDV-PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG 171 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~-~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg 171 (338)
.++.+.+.+.++..+.... ++.+.-++| +..+.+++.....+ |.++...+.++.. .. ...+++.+|
T Consensus 41 ~~~~~~~~~~l~~~~g~~~~~~vi~~~~g--t~a~~~a~~~~~~~-------Gd~Vlv~~~~~~~---~~-~~~~~~~~g 107 (401)
T PLN02409 41 PALTKELLEDVKYIFKTKSGTPFIFPTTG--TGAWESALTNTLSP-------GDKVVSFRIGQFS---LL-WIDQMQRLN 107 (401)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCc--HHHHHHHHHhcCCC-------CCEEEEeCCCchh---HH-HHHHHHHcC
Confidence 3444445555555554433 456666766 44444444433322 2455554433321 12 246788899
Q ss_pred CCceEEEeChhH--HHHHHHHHHHhh--ccCCc---cccC----chHHHHHHHHH--hhhCCCeEEEecCch
Q 019615 172 TRHHEFHFTVQE--GIDALEEVIYHI--ETYDV---TTIR----ASTPMFLMSRK--IKSLGVKMVISGEGS 230 (338)
Q Consensus 172 ~~~~~v~~~~~~--~~~~l~~~~~~~--e~~~~---~~~~----~~~~~~~l~~~--a~~~g~~vvltG~Gg 230 (338)
.+...+..+... -.+.+++.+... ..+.. .... ...+.-.+.+. +++.|+-+++.|--+
T Consensus 108 ~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s 179 (401)
T PLN02409 108 FDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSS 179 (401)
T ss_pred CceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccc
Confidence 988888765321 133344433210 01110 0000 01223345555 777788888776543
No 195
>PRK06234 methionine gamma-lyase; Provisional
Probab=22.14 E-value=6.6e+02 Score=23.85 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=50.2
Q ss_pred HHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEE
Q 019615 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~ 178 (338)
|++++.+.... +-++.++||... +.+++.. .... |..+.+....+.. -.......++..|++...+.
T Consensus 69 Le~~iA~~~g~--~~~l~~~sG~~A-i~~al~~-ll~~-------Gd~Vl~~~~~y~~--~~~~~~~~~~~~G~~v~~vd 135 (400)
T PRK06234 69 VENKLALLEGG--EAAVVAASGMGA-ISSSLWS-ALKA-------GDHVVASDTLYGC--TFALLNHGLTRYGVEVTFVD 135 (400)
T ss_pred HHHHHHHHhCC--CcEEEEcCHHHH-HHHHHHH-HhCC-------CCEEEEecCccch--HHHHHHHHHhhCCeEEEEEC
Confidence 33444444332 347899999954 3333332 2221 2334333222211 11223345567888777665
Q ss_pred eC-hhHHHHHHHHHH--HhhccCCccccCchHHHHHHHHHhhhC--CCeEEEec
Q 019615 179 FT-VQEGIDALEEVI--YHIETYDVTTIRASTPMFLMSRKIKSL--GVKMVISG 227 (338)
Q Consensus 179 ~~-~~~~~~~l~~~~--~~~e~~~~~~~~~~~~~~~l~~~a~~~--g~~vvltG 227 (338)
.. .+++.+.+.+-. -.++.|.+++.. ....-.+.+.+++. |+.+++..
T Consensus 136 ~~d~e~l~~~i~~~tklI~iesP~NPtG~-v~dl~~I~~la~~~~~~i~livDe 188 (400)
T PRK06234 136 TSNLEEVRNALKANTKVVYLETPANPTLK-VTDIKAISNIAHENNKECLVFVDN 188 (400)
T ss_pred CCCHHHHHHHhccCCeEEEEECCCCCCCC-cCCHHHHHHHHHhcCCCCEEEEEC
Confidence 43 222222221100 012344433211 11233455666654 77777654
No 196
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=22.02 E-value=3.1e+02 Score=28.32 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=34.4
Q ss_pred CCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHH
Q 019615 88 NPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRY 133 (338)
Q Consensus 88 ~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~ 133 (338)
.++..+.+.+.+.+.++++.....++.+.||||-.=..+...+.+.
T Consensus 36 ~ee~a~~vA~~I~~~I~~~~~~~~~~~laLsGGsTP~~~Y~~L~~~ 81 (652)
T PRK02122 36 SEEASRAVAQEIATLIRERQAEGKPCVLGLATGSSPIGVYAELIRM 81 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcCHHHHHHHHHhh
Confidence 3444566777777777777777788999999998888777766654
No 197
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=21.96 E-value=5.8e+02 Score=22.87 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=40.6
Q ss_pred CCceEEEecCcccHHH---HHHHHHHHhchhhhhhhcCCCcceeeccCCCC-------------chHHHHHHHHHHhCCC
Q 019615 110 DVPFGVLLSGGLDSSL---VAAVASRYLADSEAACQWGSQLHSFCIGLEGS-------------PDLKAAREVADYLGTR 173 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~---iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-------------~e~~~A~~~a~~lg~~ 173 (338)
..++.|.+|.|.|+.. +..++..+.. ..+..|++++.+. .+...-+++|+..|-.
T Consensus 164 ~rk~iIllTDG~~~~~~~~~~~~~~~~~~---------~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~ 234 (296)
T TIGR03436 164 GRKALIVISDGGDNRSRDTLERAIDAAQR---------ADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGR 234 (296)
T ss_pred CCeEEEEEecCCCcchHHHHHHHHHHHHH---------cCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCe
Confidence 3567899999999753 2222222211 3567777766421 1345677888888866
Q ss_pred ceEEEeChhHHHHHHHHHH
Q 019615 174 HHEFHFTVQEGIDALEEVI 192 (338)
Q Consensus 174 ~~~v~~~~~~~~~~l~~~~ 192 (338)
+... +..++.+.+..+.
T Consensus 235 ~~~~--~~~~l~~~f~~i~ 251 (296)
T TIGR03436 235 AFYV--NSNDLDGAFAQIA 251 (296)
T ss_pred Eecc--cCccHHHHHHHHH
Confidence 4333 4445444444443
No 198
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=21.62 E-value=2.7e+02 Score=23.65 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHh
Q 019615 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYL 134 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~ 134 (338)
++.+.+.+.+...+.......+.||||---..+...+.+..
T Consensus 4 ~~a~~i~~~i~~~i~~~~~~~i~LsgGstp~~~y~~L~~~~ 44 (199)
T PF01182_consen 4 AVAEAIAEAIEEAIAERGRAVIALSGGSTPKPLYQELAKLH 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEE--SCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhhhc
Confidence 34444555555555555778999999988877777766654
No 199
>PTZ00376 aspartate aminotransferase; Provisional
Probab=20.64 E-value=7.2e+02 Score=23.44 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=50.2
Q ss_pred EecCcccHHHHHHHHHH-HhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeCh-hH---HHHHHHH
Q 019615 116 LLSGGLDSSLVAAVASR-YLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTV-QE---GIDALEE 190 (338)
Q Consensus 116 ~LSGGlDSs~iaa~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~-~~---~~~~l~~ 190 (338)
..+||..+..++..+.. .... |..+...+-.++ ....+++..|.+...+.+.. ++ -.+.+++
T Consensus 102 ~t~G~~~al~~~~~~l~~~~~~-------Gd~Vlv~~P~y~------~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~ 168 (404)
T PTZ00376 102 QALSGTGALRLGFEFLKRFLPA-------GTTVYVSNPTWP------NHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLE 168 (404)
T ss_pred eccCcchHHHHHHHHHHHhcCC-------CCEEEEcCCCch------hHHHHHHHcCCceeeccccCcccCCcCHHHHHH
Confidence 57788888655543322 2211 223333332332 34557788888877776621 11 1233333
Q ss_pred HHHh---------hccCCccccCc-h-HHHHHHHHHhhhCCCeEEEecCchhhcccCCc
Q 019615 191 VIYH---------IETYDVTTIRA-S-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (338)
Q Consensus 191 ~~~~---------~e~~~~~~~~~-~-~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~ 238 (338)
.+.. ...|++|+-.. + --...+.+.+++.++-++ . ||.+..+.
T Consensus 169 ~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii-~----De~Y~~~~ 222 (404)
T PTZ00376 169 DLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPF-F----DMAYQGFA 222 (404)
T ss_pred HHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEE-E----ehhhcCcc
Confidence 3321 12233332111 1 122356667777776544 3 77776554
No 200
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=20.45 E-value=5e+02 Score=21.56 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhh--c--CCceEEEecCcccHH--HHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHH
Q 019615 94 VLRKAFEKAVVKRLM--T--DVPFGVLLSGGLDSS--LVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVA 167 (338)
Q Consensus 94 ~l~~~l~~av~~rl~--~--~~~v~v~LSGGlDSs--~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a 167 (338)
.+.+.|..|.+.--. . ...+.+.+|+|-|+. -+..++++.. + ..+.-+++++. .|...-+++|
T Consensus 87 ~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~l~-~--------~~I~v~~IgiG--~~~~~L~~ia 155 (183)
T cd01453 87 SLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDKLK-K--------ENIRVSVIGLS--AEMHICKEIC 155 (183)
T ss_pred hHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHHHH-H--------cCcEEEEEEec--hHHHHHHHHH
Confidence 455555555543211 1 234788889887652 2222222221 1 23555556653 3556678899
Q ss_pred HHhCCCceEE
Q 019615 168 DYLGTRHHEF 177 (338)
Q Consensus 168 ~~lg~~~~~v 177 (338)
+..|-.+...
T Consensus 156 ~~tgG~~~~~ 165 (183)
T cd01453 156 KATNGTYKVI 165 (183)
T ss_pred HHhCCeeEee
Confidence 9998776654
No 201
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.43 E-value=6.5e+02 Score=22.87 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=11.5
Q ss_pred HHHHHhhhCCCeEEEecC
Q 019615 211 LMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 211 ~l~~~a~~~g~~vvltG~ 228 (338)
.+++.|++.|+++++.|.
T Consensus 270 ~~~~~a~~~gi~~~~~~~ 287 (316)
T cd03319 270 RIADLARAAGLKVMVGCM 287 (316)
T ss_pred HHHHHHHHcCCCEEEECc
Confidence 445556667777777655
No 202
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=20.37 E-value=4.1e+02 Score=20.93 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=8.9
Q ss_pred cEEeCCCcEEEe
Q 019615 56 FISFPPGHIYSS 67 (338)
Q Consensus 56 i~~l~pG~~~~~ 67 (338)
+..|+|+..+.+
T Consensus 28 l~~L~~~d~fni 39 (155)
T PF13768_consen 28 LRSLPPGDRFNI 39 (155)
T ss_pred HHhCCCCCEEEE
Confidence 466889988754
No 203
>PRK12342 hypothetical protein; Provisional
Probab=20.35 E-value=3.2e+02 Score=24.40 Aligned_cols=55 Identities=11% Similarity=-0.061 Sum_probs=29.4
Q ss_pred EEEec----CcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHHhCCCceE
Q 019615 114 GVLLS----GGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHE 176 (338)
Q Consensus 114 ~v~LS----GGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~lg~~~~~ 176 (338)
++.+| +|.|+...+..++....+. +.++.. .|.. +.+.....-.+|+.||+++..
T Consensus 81 avli~d~~~~g~D~~ata~~La~~i~~~------~~DLVl--~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 81 LYLVQDAQLEHALPLDTAKALAAAIEKI------GFDLLL--FGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred EEEEecCccCCCCHHHHHHHHHHHHHHh------CCCEEE--EcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 56666 5678876666666554321 112221 2222 222334566788888887643
No 204
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=20.29 E-value=2.8e+02 Score=23.45 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=33.6
Q ss_pred eeccCCCCchHHHHHHHHHHh---CCCceEEEe----ChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCe
Q 019615 150 FCIGLEGSPDLKAAREVADYL---GTRHHEFHF----TVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVK 222 (338)
Q Consensus 150 ~t~~~~~~~e~~~A~~~a~~l---g~~~~~v~~----~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~ 222 (338)
|-.||..++...-|+.+.+.+ +........ .+++.++.+.+.+..........+.+++.-|+....+...|++
T Consensus 4 YlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~ 83 (187)
T PF05728_consen 4 YLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLP 83 (187)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCC
Confidence 455777666665666555554 333333222 2233344444444432211111233444444444444445555
Q ss_pred EEE
Q 019615 223 MVI 225 (338)
Q Consensus 223 vvl 225 (338)
.||
T Consensus 84 avL 86 (187)
T PF05728_consen 84 AVL 86 (187)
T ss_pred EEE
Confidence 443
No 205
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=20.08 E-value=6.8e+02 Score=23.51 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCceEEEeC-hhHHHHHHHHHH--HhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCc
Q 019615 163 AREVADYLGTRHHEFHFT-VQEGIDALEEVI--YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (338)
Q Consensus 163 A~~~a~~lg~~~~~v~~~-~~~~~~~l~~~~--~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~G 229 (338)
....++.+|++...+..+ .+++.+.+.+-. -.++.|.++... ....-.+.+.+++.|+.+++..--
T Consensus 110 ~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~-~~dl~~I~~la~~~gi~livD~a~ 178 (380)
T TIGR01325 110 ISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGE-LVDIAALAELAHAIGALLVVDNVF 178 (380)
T ss_pred HHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCe-eeCHHHHHHHHHHcCCEEEEECCC
Confidence 445677789887776554 222222221100 012334332111 122334566677778888876653
No 206
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=20.07 E-value=1.6e+02 Score=20.07 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=16.6
Q ss_pred EEEECCCCEEEEEEccCCC--cceEE
Q 019615 9 VLLDTRDKSFIAARDAIGV--TPLYM 32 (338)
Q Consensus 9 ~i~D~~~~~l~l~rD~~G~--~pLyy 32 (338)
+.||...+++.+..|. |+ +||+.
T Consensus 36 i~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 36 IVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp EEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred EEEeccCCEEEEEccC-CcccceeEE
Confidence 5688888999999994 44 67765
No 207
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.01 E-value=3.4e+02 Score=25.70 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=12.6
Q ss_pred HHHHHHhhhCCCeEEEecC
Q 019615 210 FLMSRKIKSLGVKMVISGE 228 (338)
Q Consensus 210 ~~l~~~a~~~g~~vvltG~ 228 (338)
-.+.+.+++.|+.+++..-
T Consensus 166 ~~I~~la~~~gi~lIvD~a 184 (388)
T PRK07811 166 AALAELAHDAGAKVVVDNT 184 (388)
T ss_pred HHHHHHHHHcCCEEEEECC
Confidence 3456667777887777653
Done!