Query 019615
Match_columns 338
No_of_seqs 317 out of 1946
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 04:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 2.3E-69 7.8E-74 531.5 27.8 332 1-338 116-452 (553)
2 1jgt_A Beta-lactam synthetase; 100.0 2.8E-64 9.6E-69 491.3 24.5 306 1-337 116-445 (513)
3 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 9.7E-64 3.3E-68 486.7 22.4 313 1-336 99-444 (503)
4 1ao0_A Glutamine phosphoribosy 99.5 3.2E-14 1.1E-18 136.8 12.6 105 1-108 153-271 (459)
5 1xff_A D-fructose-6-, glucosam 99.3 6.3E-12 2.1E-16 110.6 9.1 70 1-74 151-221 (240)
6 2e18_A NH(3)-dependent NAD(+) 99.3 3.6E-12 1.2E-16 113.4 6.8 133 92-239 6-141 (257)
7 1xng_A NH(3)-dependent NAD(+) 99.2 5.8E-12 2E-16 112.7 6.5 133 92-239 9-144 (268)
8 1kqp_A NAD+ synthase, NH(3)-de 99.2 1.7E-11 5.8E-16 109.7 8.9 146 89-241 19-171 (271)
9 3bl5_A Queuosine biosynthesis 99.2 2.5E-11 8.4E-16 105.1 9.7 118 110-239 3-131 (219)
10 3n05_A NH(3)-dependent NAD(+) 99.2 4.5E-11 1.5E-15 118.4 8.8 139 91-241 305-447 (590)
11 3k32_A Uncharacterized protein 99.1 1.3E-10 4.6E-15 99.5 9.3 109 111-235 7-116 (203)
12 1wxi_A NH(3)-dependent NAD(+) 99.1 3.9E-10 1.3E-14 100.9 10.3 145 92-240 23-173 (275)
13 3p52_A NH(3)-dependent NAD(+) 99.1 1.2E-10 4.1E-15 102.7 6.8 132 93-239 7-145 (249)
14 1ecf_A Glutamine phosphoribosy 99.1 1.5E-10 5.3E-15 112.4 7.7 68 1-69 162-234 (504)
15 3fiu_A NH(3)-dependent NAD(+) 99.1 5.5E-11 1.9E-15 105.0 4.1 135 91-240 12-155 (249)
16 2pg3_A Queuosine biosynthesis 99.0 1.5E-09 5E-14 94.9 10.5 158 111-296 3-177 (232)
17 2bpl_A Glucosamine--fructose-6 99.0 1.1E-09 3.7E-14 108.9 8.6 67 1-71 151-218 (608)
18 1wy5_A TILS, hypothetical UPF0 98.9 4E-09 1.4E-13 96.5 10.3 125 93-232 5-137 (317)
19 2dpl_A GMP synthetase, GMP syn 98.9 2.9E-09 1E-13 96.9 7.2 125 94-233 5-133 (308)
20 2nz2_A Argininosuccinate synth 98.8 7.9E-09 2.7E-13 97.4 9.7 110 110-230 5-121 (413)
21 1vl2_A Argininosuccinate synth 98.8 6.9E-09 2.4E-13 97.2 8.4 108 111-230 15-130 (421)
22 2hma_A Probable tRNA (5-methyl 98.8 6.2E-09 2.1E-13 97.3 7.8 113 110-234 9-137 (376)
23 1kor_A Argininosuccinate synth 98.8 1.7E-08 5.8E-13 94.9 10.3 110 112-231 2-118 (400)
24 3q4g_A NH(3)-dependent NAD(+) 98.8 6.5E-09 2.2E-13 92.8 7.1 145 92-241 24-183 (279)
25 2der_A TRNA-specific 2-thiouri 98.7 2.4E-08 8.1E-13 93.3 8.2 112 110-233 17-145 (380)
26 3mdn_A Glutamine aminotransfer 98.7 1.8E-08 6.1E-13 90.0 6.7 66 6-75 187-255 (274)
27 1k92_A Argininosuccinate synth 98.6 6E-08 2.1E-12 91.9 8.5 112 107-229 7-130 (455)
28 3dpi_A NAD+ synthetase; ssgcid 98.6 2.8E-08 9.7E-13 88.8 5.7 132 101-241 35-183 (285)
29 3a2k_A TRNA(Ile)-lysidine synt 98.6 1.5E-07 5.2E-12 90.4 10.1 119 99-232 5-131 (464)
30 3tqi_A GMP synthase [glutamine 98.6 1.6E-07 5.3E-12 91.7 9.8 126 94-234 215-344 (527)
31 1gpm_A GMP synthetase, XMP ami 98.5 1.9E-07 6.5E-12 91.0 9.0 125 92-231 210-339 (525)
32 4f4h_A Glutamine dependent NAD 98.5 6E-07 2.1E-11 88.2 11.5 139 92-241 280-427 (565)
33 1sur_A PAPS reductase; assimil 98.5 4E-07 1.4E-11 78.3 8.9 108 111-232 45-159 (215)
34 3sdb_A Glutamine-dependent NAD 98.5 1.6E-07 5.4E-12 94.2 7.2 83 93-181 342-431 (680)
35 2ywb_A GMP synthase [glutamine 98.5 5.2E-07 1.8E-11 87.5 10.4 124 94-233 194-321 (503)
36 3ilv_A Glutamine-dependent NAD 98.4 4.8E-07 1.7E-11 90.1 8.3 146 92-240 283-472 (634)
37 2c5s_A THII, probable thiamine 98.4 3.8E-07 1.3E-11 86.3 6.8 107 111-233 188-303 (413)
38 2vxo_A GMP synthase [glutamine 98.4 2.8E-06 9.7E-11 85.1 13.1 80 92-180 223-304 (697)
39 1ni5_A Putative cell cycle pro 98.3 2.2E-06 7.5E-11 81.6 11.0 111 103-232 6-120 (433)
40 3uow_A GMP synthetase; structu 98.3 1.9E-06 6.5E-11 84.4 8.6 126 93-233 239-373 (556)
41 2o8v_A Phosphoadenosine phosph 98.1 5.6E-06 1.9E-10 73.0 8.2 109 111-233 46-161 (252)
42 1zun_A Sulfate adenylyltransfe 98.1 7.2E-06 2.5E-10 74.9 9.1 111 110-234 46-160 (325)
43 2oq2_A Phosphoadenosine phosph 98.0 1.8E-05 6E-10 70.1 8.3 112 111-233 42-164 (261)
44 1vbk_A Hypothetical protein PH 97.8 2.9E-05 1E-09 70.3 6.8 80 111-232 180-267 (307)
45 3rjz_A N-type ATP pyrophosphat 97.8 2.5E-05 8.6E-10 67.7 5.4 60 112-181 6-73 (237)
46 1ea0_A Glutamate synthase [NAD 97.6 8.4E-05 2.9E-09 78.8 6.7 66 1-68 326-394 (1479)
47 1ofd_A Ferredoxin-dependent gl 97.5 0.00014 4.8E-09 77.4 7.6 66 1-68 325-393 (1520)
48 1te5_A Conserved hypothetical 97.1 0.00047 1.6E-08 60.7 5.3 65 4-73 168-252 (257)
49 2goy_A Adenosine phosphosulfat 97.0 0.0027 9.3E-08 56.3 9.6 59 111-180 55-115 (275)
50 2wsi_A FAD synthetase; transfe 97.0 0.00084 2.9E-08 60.6 5.7 104 111-235 54-172 (306)
51 3fwk_A FMN adenylyltransferase 96.0 0.012 4.1E-07 52.6 6.7 66 112-177 60-139 (308)
52 3f9t_A TDC, L-tyrosine decarbo 33.6 2.4E+02 0.0081 24.5 10.5 131 93-230 68-211 (397)
53 2xn6_B Thyroxine-binding globu 33.2 53 0.0018 18.5 3.4 20 2-21 7-27 (35)
54 2riv_B Thyroxine-binding globu 32.1 53 0.0018 19.2 3.4 21 2-22 12-33 (40)
55 1hle_B Horse leukocyte elastas 31.8 55 0.0019 17.8 3.2 19 3-21 7-26 (31)
56 3ri6_A O-acetylhomoserine sulf 31.2 67 0.0023 29.6 5.7 119 95-230 83-207 (430)
57 4afx_B Protein Z dependent pro 31.1 49 0.0017 18.8 3.0 21 2-22 8-29 (36)
58 2h4p_B MENT, heterochromatin-a 29.4 62 0.0021 18.0 3.2 19 3-21 8-27 (34)
59 2orv_A Thymidine kinase; TP4A 28.5 1.8E+02 0.0062 24.4 7.4 31 209-239 105-138 (234)
60 3ndn_A O-succinylhomoserine su 28.4 1.1E+02 0.0037 27.9 6.6 119 95-230 82-206 (414)
61 3ndd_B Alpha-1-antitrypsin; se 27.0 51 0.0018 18.7 2.6 21 2-22 8-29 (36)
62 3mmt_A Fructose-bisphosphate a 24.9 1.2E+02 0.004 27.1 5.6 32 91-122 241-272 (347)
63 2z67_A O-phosphoseryl-tRNA(SEC 22.8 1.8E+02 0.0063 26.6 7.1 38 92-130 131-168 (456)
64 4b4k_A N5-carboxyaminoimidazol 22.7 99 0.0034 24.9 4.4 67 147-236 24-93 (181)
65 3nwp_A 6-phosphogluconolactona 22.1 43 0.0015 28.2 2.3 41 92-132 18-58 (233)
66 3lhi_A Putative 6-phosphogluco 22.1 43 0.0015 28.2 2.3 40 92-131 15-54 (232)
67 3lwd_A 6-phosphogluconolactona 21.6 69 0.0024 26.8 3.5 39 93-131 15-53 (226)
68 3eb9_A 6-phosphogluconolactona 20.7 57 0.0019 28.0 2.8 42 90-131 15-56 (266)
69 4grd_A N5-CAIR mutase, phospho 20.6 1.1E+02 0.0039 24.4 4.3 25 212-236 59-83 (173)
70 3mbd_A Fructose-bisphosphate a 20.5 2.1E+02 0.0073 25.4 6.4 32 91-122 240-271 (342)
71 1m93_C Serine proteinase inhib 20.2 1.1E+02 0.0038 17.9 3.2 20 3-22 15-34 (41)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=2.3e-69 Score=531.53 Aligned_cols=332 Identities=57% Similarity=0.970 Sum_probs=287.7
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEEeeCCCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~ 80 (338)
+|+|||||++||.++++++++||++|+|||||.+..++.++||||+++|...+++|++|||||++.+++++.++||++.+
T Consensus 116 ~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~~~i~~l~pG~~~~~~~g~~~~yw~~~~ 195 (553)
T 1ct9_A 116 DLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDW 195 (553)
T ss_dssp GCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTCSEEEECCTTEEEETTTCSEEECCCCGG
T ss_pred hCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhcCCEEEECCCeEEEEcCCcEEEeecCCc
Confidence 58999999999998899999999999999999984357899999999999999999999999999887777899999875
Q ss_pred CCC-CCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhh----hhcCCCcceeeccCC
Q 019615 81 YSE-QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAA----CQWGSQLHSFCIGLE 155 (338)
Q Consensus 81 ~~~-~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~----~~~~~~~~~~t~~~~ 155 (338)
... ..++.++.+++++++|.+||++|+.+|+|+|++||||+|||+|++++++...+.... ..+..++++||++++
T Consensus 196 ~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~ 275 (553)
T 1ct9_A 196 FDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP 275 (553)
T ss_dssp GSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC
Confidence 431 223557789999999999999999999999999999999999999999876421000 000013899999998
Q ss_pred CCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhccc
Q 019615 156 GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (338)
Q Consensus 156 ~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~ 235 (338)
+++|..+|+++|+++|++|+++.++.+++.+.+++++++.++|+.+++++.+++|++++.+++.|++|++||+||||+|+
T Consensus 276 ~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElfg 355 (553)
T 1ct9_A 276 GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFG 355 (553)
T ss_dssp TCHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHT
T ss_pred CCcHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHcCCeEEEECCCchhccc
Confidence 88899999999999999999999999999899999999888876544545678899999999999999999999999999
Q ss_pred CCcccccCCChhHHHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHH
Q 019615 236 GYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILR 315 (338)
Q Consensus 236 Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR 315 (338)
||.+|+..|....|.+++.+++.+++.++++|.||++|++|+|+|+||||++|||||++||+++|+.++ +..+|+|||
T Consensus 356 GY~~~~~~~~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~R~PfLD~~lve~a~~lP~~~k~~~~--g~~~K~iLR 433 (553)
T 1ct9_A 356 GYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGN--GKMEKHILR 433 (553)
T ss_dssp CSGGGGGCCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEECGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHH
T ss_pred CcHhHhhCcchhhHHHHHHHHHHHHhhhcchhhhhHHhhcCceeECCcCCHHHHHHHhcCCHHHhccCC--CCcchHHHH
Confidence 999998888877788888888888998999999999999999999999999999999999999999862 136899999
Q ss_pred hhcccCCCCCCCCcccceeccCC
Q 019615 316 NAFDDDKQPYLPKVSHFLIMNMF 338 (338)
Q Consensus 316 ~a~~~~~~~~lP~~i~~~~~~~~ 338 (338)
+||++ +||++|.||....|
T Consensus 434 ~a~~~----~LP~~i~~R~K~~f 452 (553)
T 1ct9_A 434 ECFEA----YLPASVAWRQKEQF 452 (553)
T ss_dssp HHHGG----GSCHHHHTCCCCTT
T ss_pred HHHHh----hCCHHHHcCCCcCC
Confidence 99999 99999999975443
No 2
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=100.00 E-value=2.8e-64 Score=491.25 Aligned_cols=306 Identities=26% Similarity=0.361 Sum_probs=262.7
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhcc----------------CCcEEeCCCcE
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDC----------------ERFISFPPGHI 64 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~----------------~~i~~l~pG~~ 64 (338)
+|+|||||++||.++ ++++|||+|+|||||+.. ++.++||||+++|+... ++|++|||||+
T Consensus 116 ~l~G~fA~~i~d~~~--l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~ 192 (513)
T 1jgt_A 116 LVNGRFATVVRTGDR--VLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAV 192 (513)
T ss_dssp TCCEEEEEEEEETTE--EEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEE
T ss_pred hcCeeEEEEEEECCE--EEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcE
Confidence 589999999999854 999999999999999985 78999999999998764 89999999999
Q ss_pred EEec--CCe--EEEeeCCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhh
Q 019615 65 YSSK--QGG--LRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAA 140 (338)
Q Consensus 65 ~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~ 140 (338)
+.++ ++. .++||++.... ...+.++.+++++++|.++|++|+.+++|++++||||+|||+|++++++..
T Consensus 193 l~i~~~~g~~~~~~yw~~~~~~-~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~------ 265 (513)
T 1jgt_A 193 MDIDLGSGTAVTHRTWTPGLSR-RILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA------ 265 (513)
T ss_dssp EEEETTTTEEEEEECCCCCCSC-BCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH------
T ss_pred EEEEcCCCCEEEEeecCCcccc-cCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC------
Confidence 9887 664 57899986542 223445678999999999999999999999999999999999999998875
Q ss_pred hhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCC
Q 019615 141 CQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLG 220 (338)
Q Consensus 141 ~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g 220 (338)
.++.+||+++++.+|..+|+++|+++|++|+++.++.+++.+.+++.+++++.+++....+.+++|++++.+ +.|
T Consensus 266 ----~~v~tfti~~~~~~E~~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g 340 (513)
T 1jgt_A 266 ----GELDTVSMGTDTSNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGP 340 (513)
T ss_dssp ----SSCEEEEEECSSCCCHHHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSS
T ss_pred ----CCceEEEcCCCCCCHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcC
Confidence 368999999988899999999999999999999999988888899999888876532333456778888877 579
Q ss_pred CeEEEecCchhhcccCCcccccCCChhHHHHHHHHHHHhcccccccchhhhhh----hcCccccCCCCCHHHHHHHhcCC
Q 019615 221 VKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTS----AWGVEARVPFLDKEFINTAMSID 296 (338)
Q Consensus 221 ~~vvltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~----~~gve~r~PflD~~lve~~~~lP 296 (338)
++|++||+||||+|+||.+| +....+.++ .+++++.++++ |+++| ++|+|+|+||||++|||||++||
T Consensus 341 ~~VvltG~GaDElfgGY~~~---~~~~~l~~e---~l~~l~~~~ll--Dr~sm~la~a~glE~R~PfLD~~lve~a~~lP 412 (513)
T 1jgt_A 341 ERRILTGYGADIPLGGMHRE---DRLPALDTV---LAHDMATFDGL--NEMSPVLSTLAGHWTTHPYWDREVLDLLVSLE 412 (513)
T ss_dssp CCEEECCTTTHHHHTTTCCC---SCCHHHHHH---HHHHHHHCTTC--CTTCTHHHHTTTCEEECGGGSHHHHHHHHHBC
T ss_pred CCEEEeCCChhhcccCcccc---CChhhcCHH---HHHHHhhccch--hhhhhhhhhhcCcceECCCCCHHHHHHHHcCC
Confidence 99999999999999999987 333344444 34455666777 99999 99999999999999999999999
Q ss_pred ccccccCCCCCCcchHHHHhhcccCCCCCCCCcccceeccC
Q 019615 297 PEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFLIMNM 337 (338)
Q Consensus 297 ~~~k~~~~~~~~~~K~ilR~a~~~~~~~~lP~~i~~~~~~~ 337 (338)
+++|+.+ +.+|+|||+||++ +||++|.||....
T Consensus 413 ~~~k~~~----~~~K~iLR~a~~~----~lP~~i~~R~K~g 445 (513)
T 1jgt_A 413 AGLKRRH----GRDKWVLRAAMAD----ALPAETVNRPKLG 445 (513)
T ss_dssp HHHHEET----TEETHHHHHHHTT----TSCHHHHHSCCC-
T ss_pred HHHhcCC----CCCHHHHHHHHHh----hCCHHHHhCCcCC
Confidence 9999986 3689999999999 9999999997543
No 3
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=100.00 E-value=9.7e-64 Score=486.73 Aligned_cols=313 Identities=25% Similarity=0.358 Sum_probs=265.5
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCe-----------------EEEecccchhhhc--------cCC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGS-----------------IWFASEMKALSDD--------CER 55 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~-----------------~~faSe~~~l~~~--------~~~ 55 (338)
+|+|+|||++||.+++ |+++|||+|+|||||... ++. ++||||+++|... +++
T Consensus 99 ~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~~~ 176 (503)
T 1q15_A 99 LAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKN 176 (503)
T ss_dssp GCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBTT
T ss_pred HcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCcccCC
Confidence 5899999999999888 999999999999999985 677 9999999999887 899
Q ss_pred cEEeCCCcEEEecC-C-----eEEEeeCCCCCCC-CCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHH
Q 019615 56 FISFPPGHIYSSKQ-G-----GLRRWYNPPCYSE-QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAA 128 (338)
Q Consensus 56 i~~l~pG~~~~~~~-~-----~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa 128 (338)
|++|+|||++.++. + ..++||++..... ...+.++.+++++++|.++|++|+.+++|++++||||+|||+|++
T Consensus 177 v~~l~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaa 256 (503)
T 1q15_A 177 AQRLKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTA 256 (503)
T ss_dssp EEECCSSEEEEEEECTTCCEEEEEEESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHH
T ss_pred eEEECCCeEEEEeCCCcccccceeeecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHH
Confidence 99999999998853 2 2678999865431 222445678999999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHH
Q 019615 129 VASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTP 208 (338)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 208 (338)
++++.. .++.+||+++++.+|..+|+++|+++|++|+++.++.+++.+.+++.+++++.|++....+.++
T Consensus 257 la~~~~----------~~~~~~t~~~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~ 326 (503)
T 1q15_A 257 LASRHF----------KKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSG 326 (503)
T ss_dssp HHTTTC----------SEEEEEEEEETTBCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHhC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHH
Confidence 998754 3689999999888999999999999999999999999988899999999888765433334567
Q ss_pred HHHHHHHhhhCCCeEEEecCchhhcccCCccc-ccCCChhHHHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHH
Q 019615 209 MFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF-HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKE 287 (338)
Q Consensus 209 ~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~ 287 (338)
+|.+++.| +.|++|++||+||||+|+||.+| ...+....+.++...++. +++.|.|+++|++|+|+|+||||++
T Consensus 327 ~~~l~~~a-~~~~~VvltG~GaDElf~GY~~~~~~~~~~~~l~~e~~~r~~----~~L~r~Dr~~ma~glE~R~PfLD~~ 401 (503)
T 1q15_A 327 LFNVYRQA-QGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTR----WTGEFATHGASCYGIDIRHPFWSHS 401 (503)
T ss_dssp HHHHHHHH-BTTBSEEECCTTHHHHHTTTSCTTCCCSCHHHHHHHHHHHHH----HHSTTCCHHHHHTTCEEECTTCCHH
T ss_pred HHHHHHHH-HCCCCEEEeCCChhhhccChHHHHHhcCCHHHHhHHHHHHHH----HhhhhhhHHHHHcCCCEECCCCCHH
Confidence 88888887 57899999999999999999988 344544445555544443 5688999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCCCCcchHHHHhhcccCCCCCCCCcccceecc
Q 019615 288 FINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFLIMN 336 (338)
Q Consensus 288 lve~~~~lP~~~k~~~~~~~~~~K~ilR~a~~~~~~~~lP~~i~~~~~~ 336 (338)
|||||++||+++|+.++ .+|+|||+||++. ++||++|.||...
T Consensus 402 lve~a~~lP~~~k~~~~----~~K~iLR~a~~~~--~~lP~~i~~R~K~ 444 (503)
T 1q15_A 402 LISLCHALHPDYKIFDN----EVKNILREYADSL--QLLPKDIVWRKKI 444 (503)
T ss_dssp HHHHHHTBCGGGTEETT----EESHHHHHHHHHT--SCSCHHHHCC---
T ss_pred HHHHHHhCCHHHHhCCC----CcHHHHHHHHhcC--CcCCHHHhcCCCC
Confidence 99999999999999874 6899999999872 3699999999754
No 4
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.54 E-value=3.2e-14 Score=136.82 Aligned_cols=105 Identities=23% Similarity=0.309 Sum_probs=83.9
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhc-cCCcEEeCCCcEEEecCCe--EEEeeC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGG--LRRWYN 77 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~--~~~~~~ 77 (338)
+|+|+|||++|| .++|+++||++|+|||||... ++.++||||+++|... .++|+.|+||+++.++.+. ..+||+
T Consensus 153 ~l~G~fa~~i~d--~~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~ 229 (459)
T 1ao0_A 153 MLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSM 229 (459)
T ss_dssp TCCEEEEEEEEC--SSEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCS
T ss_pred hhccceEEEEEe--CCEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCC
Confidence 589999999999 479999999999999999986 7889999999999875 6899999999999987654 457887
Q ss_pred CCCCCC--------CCC---CCCccHHHHHHHHHHHHHHhhh
Q 019615 78 PPCYSE--------QIP---SNPYDPLVLRKAFEKAVVKRLM 108 (338)
Q Consensus 78 ~~~~~~--------~~~---~~~~~~~~l~~~l~~av~~rl~ 108 (338)
+..... ..| ...+.+.+.+..+.+.+.+.+.
T Consensus 230 ~~~~~~c~feyiyfarp~s~~~~~~v~~~r~~lg~~La~~~~ 271 (459)
T 1ao0_A 230 NINRSICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESA 271 (459)
T ss_dssp SCCCCEEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHC
T ss_pred CccccccceeeeeccCCcchhccHhHHHHHHHHHHHHHHhcc
Confidence 532100 112 2345677888888888888664
No 5
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.29 E-value=6.3e-12 Score=110.65 Aligned_cols=70 Identities=31% Similarity=0.513 Sum_probs=62.2
Q ss_pred CceeeEEEEEEECC-CCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEE
Q 019615 1 MLDGMFSFVLLDTR-DKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRR 74 (338)
Q Consensus 1 ~l~G~fa~~i~D~~-~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~ 74 (338)
+|+|+|||++||.+ .++|+++||+ |||||... ++.++||||+++|.....++..||||+++.++.+.++.
T Consensus 151 ~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pG~~~~i~~~~~~~ 221 (240)
T 1xff_A 151 QLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNI 221 (240)
T ss_dssp GCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSEEEECCTTCEEEECSSCEEE
T ss_pred hcccceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCeEEEECCCEEEEEECCeEEE
Confidence 48999999999985 6899999998 99999985 67899999999999888889999999999998665543
No 6
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.28 E-value=3.6e-12 Score=113.35 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhC
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG 171 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg 171 (338)
.+++.+.+.+.+++. ...+++++||||+||+++++++.+.+.. .++.++++......|...|+++|+.+|
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g~--------~~v~av~~~~~~~~~~~~a~~~a~~lg 75 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALGK--------EKVLGLIMPYFENKDVEDAKLVAEKLG 75 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCSSCSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEEeCCCCchHHHHHHHHHHHhC
Confidence 456667777777776 5578999999999999999999887631 357788876543378899999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCcc---ccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcc
Q 019615 172 TRHHEFHFTVQEGIDALEEVIYHIETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (338)
Q Consensus 172 ~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~---~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~ 239 (338)
++|+++++++ ..+.+.+.+.. .+... .+...+.+..+.+.|.+.|+.++.||+ .||.+.||..
T Consensus 76 i~~~~i~i~~--~~~~~~~~l~~--~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~-~~e~~~Gy~t 141 (257)
T 2e18_A 76 IGYKVINIKP--IVDSFVENLEL--NLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSN-RSEFLTGYFT 141 (257)
T ss_dssp CEEEECCCHH--HHHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCC-HHHHHHTCSC
T ss_pred CCEEEEEChH--HHHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCc-hhHHhcCCee
Confidence 9999887654 22222221111 01100 000112234566777788999999998 4667788854
No 7
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.25 E-value=5.8e-12 Score=112.72 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCC--CchHHHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADY 169 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~~a~~ 169 (338)
.+.+.+.|++.++.. ...+++++||||+||+++++++.+..+ .++.++++.... ..|...|+++|+.
T Consensus 9 ~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~~~l~~~~~~---------~~v~av~~~~~~~~~~e~~~a~~~a~~ 77 (268)
T 1xng_A 9 IVYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVGVLCQKVFK---------ENAHALLMPSSVSMPENKTDALNLCEK 77 (268)
T ss_dssp HHHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEECCCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEccCcHHHHHHHHHHHHhCC---------CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 445555666665542 346799999999999999999988752 367888876542 3578899999999
Q ss_pred hCCCceEEEeChhHHHHHHHHHHHhhccCCcc-ccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcc
Q 019615 170 LGTRHHEFHFTVQEGIDALEEVIYHIETYDVT-TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (338)
Q Consensus 170 lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~-~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~ 239 (338)
+|++++++++++ ..+.+.+.+... .+... .+...+-+..+.+.|.+.|+.|+.||+ .||.+.||..
T Consensus 78 lgi~~~~i~i~~--~~~~~~~~~~~~-~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~~Gy~t 144 (268)
T 1xng_A 78 FSIPYTEYSIAP--YDAIFSSHFKDA-SLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERMLGYGT 144 (268)
T ss_dssp HTCCEEECCCHH--HHHHHHHHCTTC-CHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHHHTCSC
T ss_pred cCCCEEEEeChH--HHHHHHHHhhhc-CCchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHhcCccc
Confidence 999999887654 222221111000 00000 000012234556677788999888876 6888999864
No 8
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.24 E-value=1.7e-11 Score=109.71 Aligned_cols=146 Identities=15% Similarity=0.119 Sum_probs=89.2
Q ss_pred CccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcC-CCcceeeccCCCCchHHHHHHHH
Q 019615 89 PYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWG-SQLHSFCIGLEGSPDLKAAREVA 167 (338)
Q Consensus 89 ~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~e~~~A~~~a 167 (338)
++.++.+.+.|++.|+++. ...+.+.||||+|||++++++++....-.. ..+ .++.++++.+....|...|+++|
T Consensus 19 ~~~i~~~~~~L~d~v~~~g--~~~vvvgLSGGvDSsv~a~La~~a~~~lg~--~~~~~~v~av~~~~~~~~d~~~A~~va 94 (271)
T 1kqp_A 19 KQEIEDRVNFLKQYVKKTG--AKGFVLGISGGQDSTLAGRLAQLAVESIRE--EGGDAQFIAVRLPHGTQQDEDDAQLAL 94 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CCEEEEECCSSHHHHHHHHHHHHHHHHHHH--TTCCCEEEEEECCSSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--CCCEEEECCCCHHHHHHHHHHHHHHHHhcc--cCCCceEEEEEeCCCCCCCHHHHHHHH
Confidence 3446667778888887753 346888999999999999999876521000 000 14566665543345789999999
Q ss_pred HHhCC-CceEEEeChhHHHHHHHHHHHhh-ccCCcccc-Cc---hHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccc
Q 019615 168 DYLGT-RHHEFHFTVQEGIDALEEVIYHI-ETYDVTTI-RA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 241 (338)
Q Consensus 168 ~~lg~-~~~~v~~~~~~~~~~l~~~~~~~-e~~~~~~~-~~---~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~ 241 (338)
+++|+ +|+++++++ ..+.+.+.+... +.+..... .+ .+.+..+...|.+.|. +++++.+.||++.||....
T Consensus 95 ~~lgi~~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~-lvl~tgn~~E~~~Gy~t~~ 171 (271)
T 1kqp_A 95 KFIKPDKSWKFDIKS--TVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGL-LVLGTDHAAEAVTGFFTKY 171 (271)
T ss_dssp HHHCCSEEEECCCHH--HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTC-EEBCCCCHHHHTTTCSCTT
T ss_pred HhcCCCeEEEeccHH--HHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCC-EEEECccHHHhccCCcccc
Confidence 99999 888887753 233333333322 22111110 00 1123344555666675 4666667899999997543
No 9
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.24 E-value=2.5e-11 Score=105.11 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=73.7
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHHHhCCCceEEEeCh-hHHH-
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTV-QEGI- 185 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~~lg~~~~~v~~~~-~~~~- 185 (338)
..++++++|||+||++++.++.+.. .++.++++.+. ..+|..+++++|+++|++|+++.++. .++.
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~~----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~ 72 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKEF----------EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLAP 72 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGST
T ss_pred CCCEEEEccCcHHHHHHHHHHHHcC----------CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhcc
Confidence 4579999999999999999998764 35677776443 34688999999999999999998764 2110
Q ss_pred -----HHHHHHHHhhccCCccccCchHHHH--HHHHHhhhCCCeEEEecCchhhcccCCcc
Q 019615 186 -----DALEEVIYHIETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (338)
Q Consensus 186 -----~~l~~~~~~~e~~~~~~~~~~~~~~--~l~~~a~~~g~~vvltG~GgDelf~Gy~~ 239 (338)
+.+.........+. ++..+....| ++.+.|++.|+++++||+++|++ .||+.
T Consensus 73 ~~l~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~-~~~~~ 131 (219)
T 3bl5_A 73 NALTRNDIEIEVKDGELPS-TFVPGRNLVFLSFASILAYQIGARHIITGVCETDF-SGYPD 131 (219)
T ss_dssp GGGC--------------C-CCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-----CCGG
T ss_pred cccccccccccccccCCCC-ceeechHHHHHHHHHHHHHHcCCCEEEEecccccc-CCCCC
Confidence 01111000001111 1222222233 44677888899999999999995 56643
No 10
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.17 E-value=4.5e-11 Score=118.43 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHHHhhhcC--CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCC--CchHHHHHHH
Q 019615 91 DPLVLRKAFEKAVVKRLMTD--VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREV 166 (338)
Q Consensus 91 ~~~~l~~~l~~av~~rl~~~--~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~~ 166 (338)
..+++.+.+...++.++... ..+.+.||||+||+++++++.+.+.. .++.++++.... ..|...|+++
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~--------~~v~~v~m~~~~~~~~~~~~A~~l 376 (590)
T 3n05_A 305 ADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA--------QNVYGVSMPSKYSSDHSKGDAAEL 376 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCSSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc--------ccEEEEEECCCCCCHHHHHHHHHH
Confidence 35677777777777777543 57999999999999999999887531 368888886543 3578999999
Q ss_pred HHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccc
Q 019615 167 ADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 241 (338)
Q Consensus 167 a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~ 241 (338)
|+++|++|+++++++. .+.+...+. .+......+...+.+..+...|.+.|..|+.|| +.||++.||....
T Consensus 377 a~~lgi~~~~i~i~~~--~~~~~~~l~-~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy~t~~ 447 (590)
T 3n05_A 377 ARRTGLNFRTVSIEPM--FDAYMASLG-LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVGYSTLY 447 (590)
T ss_dssp HHHHTCEEEECCSHHH--HHHHHHHHC-CCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHTCCCSS
T ss_pred HHHcCCcEEEEEChHH--HHHHHHHhc-ccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcCchhhc
Confidence 9999999999877542 222221111 000000001111223445566777899999999 7889999987543
No 11
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.14 E-value=1.3e-10 Score=99.45 Aligned_cols=109 Identities=22% Similarity=0.211 Sum_probs=72.7
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~ 190 (338)
.++++++|||+||++++.++.+.. .++.++++.+....|...++++|+.+|++|+++.++....-..++.
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~g----------~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~ 76 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKLG----------YNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRKIVEKAADM 76 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTT----------EEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCTHHHHHHHHH
T ss_pred CeEEEEEECcHHHHHHHHHHHHcC----------CCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH
Confidence 479999999999999999987643 3577777655433488999999999999999999885422222222
Q ss_pred HHHhhccCCccccCchHHH-HHHHHHhhhCCCeEEEecCchhhccc
Q 019615 191 VIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEIFG 235 (338)
Q Consensus 191 ~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~vvltG~GgDelf~ 235 (338)
... ...+.. .+.... +.+.+.| + |+++++||+..|+..-
T Consensus 77 ~~~-~~~~~~---~c~~~~~~~l~~~A-~-g~~~i~tGh~~dD~~e 116 (203)
T 3k32_A 77 IIE-HKYPGP---AIQYVHKTVLEILA-D-EYSILADGTRRDDRVP 116 (203)
T ss_dssp HHH-HSSSHH---HHHHHHHHHHHHHT-T-TCSEEECCCCTTCCSS
T ss_pred HHh-cCCCcc---HHHHHHHHHHHHHh-c-CCCEEEECCCcccchh
Confidence 221 111211 111222 2333333 3 8999999999998763
No 12
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.09 E-value=3.9e-10 Score=100.90 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhh-hhcCCCcceeeccCCCCchHHHHHHHHHHh
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAA-CQWGSQLHSFCIGLEGSPDLKAAREVADYL 170 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~e~~~A~~~a~~l 170 (338)
++.+.+.|++.+++. .....+.+.||||+||+++++++++....-... +..+.++.++++.+....|...|+++|+.+
T Consensus 23 i~~~~~~L~~~l~~~-g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~dA~~va~~l 101 (275)
T 1wxi_A 23 IRRSVDFLKSYLQTY-PFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFI 101 (275)
T ss_dssp HHHHHHHHHHHHHHS-TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHHHHHHHHHc
Confidence 334444444444432 103479999999999999999988865210000 000025777777654445889999999999
Q ss_pred CC-CceEEEeChhHHHHHHHHHHHhhccCCccccCch----HHHHHHHHHhhhCCCeEEEecCchhhcccCCccc
Q 019615 171 GT-RHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS----TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (338)
Q Consensus 171 g~-~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~----~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~ 240 (338)
|+ +|+++++++ ..+.+.+.....+.+........ +-+..+...|.+.|..|+-|| ..+|.+.||...
T Consensus 102 gi~~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTg-n~~E~~~Gy~t~ 173 (275)
T 1wxi_A 102 QPDRVLTVNIKG--AVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTD-HAAEAITGFFTK 173 (275)
T ss_dssp CCSEEEECCCHH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCC-CHHHHTTTCSCT
T ss_pred CCCeEEEEecHH--HHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECc-cHHHHccCcccc
Confidence 99 888887653 23333222222111111010001 112233445666777666555 567888998653
No 13
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.08 E-value=1.2e-10 Score=102.74 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhhhc--CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHH
Q 019615 93 LVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVAD 168 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~ 168 (338)
+++.+.+...++..+.. ..++.++||||+||+++++++.+... .++.++++... ...|...|+++|+
T Consensus 7 ~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~g---------~~v~av~~~~~~~~~~~~~~a~~~a~ 77 (249)
T 3p52_A 7 QKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALK---------ENVFALLMPTQISNKANLEDALRLCA 77 (249)
T ss_dssp HHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHHT---------TSEEEEECCSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHcC---------CcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 34444444555444432 45799999999999999999988642 46888887654 3467889999999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCc---hHHHHHHHHHhhhCCCeEEEecCchhhcccCCcc
Q 019615 169 YLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (338)
Q Consensus 169 ~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~---~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~ 239 (338)
.+|++|+++++++ ..+.+ .....+++.....+ .+-+..+...|.+.|+.++-||+ .||++.||..
T Consensus 78 ~lgi~~~~v~i~~--~~~~~---~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn-~se~~~g~~t 145 (249)
T 3p52_A 78 DLNLEYKIIEIQS--ILDAF---IKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELLLGYGT 145 (249)
T ss_dssp HHTCEEEECCCHH--HHHHH---HTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHHHTCSC
T ss_pred HhCCCEEEEECcH--HHHHH---HHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCC-HHHHHccchh
Confidence 9999998877653 22222 11111111100000 11123455667788987666665 5677777764
No 14
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.07 E-value=1.5e-10 Score=112.36 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=58.6
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEec--C--CeEEEecccchhhhc-cCCcEEeCCCcEEEecC
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL--D--GSIWFASEMKALSDD-CERFISFPPGHIYSSKQ 69 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~--~--~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~ 69 (338)
+|+|+|||++|+.. ++|+++|||+|+|||||.... + +.++||||.++|... ++.|+.|+||+++.++.
T Consensus 162 ~l~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~ 234 (504)
T 1ecf_A 162 LIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITE 234 (504)
T ss_dssp HCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEET
T ss_pred hcCccceEEEEEcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeC
Confidence 47899999999854 579999999999999999852 3 479999999999875 67799999999998864
No 15
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.07 E-value=5.5e-11 Score=104.99 Aligned_cols=135 Identities=15% Similarity=0.173 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--CCchHHHHHHHHH
Q 019615 91 DPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVAD 168 (338)
Q Consensus 91 ~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~~a~ 168 (338)
..+.+.+.|++.|+.. ....+.++||||+||+++++++.+.+. ...++++... ...|...|+++|+
T Consensus 12 ~~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~a~l~~~~~~----------~~~av~~~~~~~~~~~~~~a~~~a~ 79 (249)
T 3fiu_A 12 YSQKLVNWLSDSCMNY--PAEGFVIGLSGGIDSAVAASLAVKTGL----------PTTALILPSDNNQHQDMQDALELIE 79 (249)
T ss_dssp HHHHHHHHHHHHHHTT--TCSEEEEECCSSHHHHHHHHHHHHTTS----------CEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEecCcHHHHHHHHHHHHhCC----------CCEEEEecCCCCCHHHHHHHHHHHH
Confidence 4566666777777653 235799999999999999999988653 2337777543 2357889999999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhh-c---cCCccccCc---hHHHHHHHHHhhhCCCeEEEecCchhhcccCCccc
Q 019615 169 YLGTRHHEFHFTVQEGIDALEEVIYHI-E---TYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (338)
Q Consensus 169 ~lg~~~~~v~~~~~~~~~~l~~~~~~~-e---~~~~~~~~~---~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~ 240 (338)
++|++|+++++++ ..+.+.+.+... . .++..+..+ .+-+..+...|.+.|+.++.||+ .||.+.||...
T Consensus 80 ~lgi~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn-~sE~~~G~~t~ 155 (249)
T 3fiu_A 80 MLNIEHYTISIQP--AYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDN-ACEWYMGYFTK 155 (249)
T ss_dssp HHTCEEEECCCHH--HHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCSCT
T ss_pred HhCCCEEEEEChH--HHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCC-HHHHhcCchhc
Confidence 9999999987653 223222211100 1 111100000 11123455667778999999995 67888888643
No 16
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.01 E-value=1.5e-09 Score=94.89 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=94.8
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCCCchHHHHHHHHHHhCCC-ceEEEeCh-hHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTR-HHEFHFTV-QEGID 186 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~~a~~lg~~-~~~v~~~~-~~~~~ 186 (338)
.++++++|||+||+++++++.+.+ .++.++++. .....|.+.|+++|+++|++ |+++.++. +++..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----------~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~ 72 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELAT 72 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSH
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----------CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhh
Confidence 368999999999999999998764 356666654 33336888999999999999 99998872 22211
Q ss_pred -HHHHH---H----HhhccCCccccCchHHHH--HHHHHhhhCCCeEEEecCchhhcccCCcccccCCChhHHHHHHHHH
Q 019615 187 -ALEEV---I----YHIETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRK 256 (338)
Q Consensus 187 -~l~~~---~----~~~e~~~~~~~~~~~~~~--~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~ 256 (338)
.+.+. + ...+.+..+++.+....| ++.+.|.+.|++++++|+.+|+.. ||+..+ ..|...
T Consensus 73 ~~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~-~~~~~r-----~~~~~~---- 142 (232)
T 2pg3_A 73 SSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFS-GYPDCR-----DEFVKA---- 142 (232)
T ss_dssp HHHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSS-CCGGGS-----HHHHHH----
T ss_pred hhcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccC-CCCCCC-----HHHHHH----
Confidence 11110 0 000111111222222222 225667788999999999999875 454311 122221
Q ss_pred HHhcccccccchhhhhhhcCccccCCCCC---HHHHHHHhcCC
Q 019615 257 IKALHLYDCLRANKSTSAWGVEARVPFLD---KEFINTAMSID 296 (338)
Q Consensus 257 ~~~l~~~~l~r~d~~~~~~gve~r~PflD---~~lve~~~~lP 296 (338)
+..+.. .++..++.+..|+++ .++++++..+-
T Consensus 143 ~~~~~~--------~~~~~~~~i~~PL~~~~K~ei~~~a~~~g 177 (232)
T 2pg3_A 143 LNQAIV--------LGIARDIRFETPLMWLNKAETWALADYYQ 177 (232)
T ss_dssp HHHHHH--------HHHTSCCEEECTTTTCCHHHHHHHHHHTT
T ss_pred HHHHHH--------HhCCCCeEEEEecCCCCHHHHHHHHHHcC
Confidence 111110 122346788899987 46888887654
No 17
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=98.96 E-value=1.1e-09 Score=108.92 Aligned_cols=67 Identities=33% Similarity=0.543 Sum_probs=60.6
Q ss_pred CceeeEEEEEEECCC-CEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCe
Q 019615 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGG 71 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~-~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~ 71 (338)
+|+|+|||++||.++ ++++++||+ +||||... ++.++||||+++|......+..|+||+++.++.+.
T Consensus 151 ~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~~~~l~~G~i~~i~~~~ 218 (608)
T 2bpl_A 151 QLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRS 218 (608)
T ss_dssp GCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCEEEECCTTCEEEECSSC
T ss_pred hhcCceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCCeEEEECCCeEEEEECCe
Confidence 589999999999987 899999998 99999985 67899999999999888899999999999886543
No 18
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.92 E-value=4e-09 Score=96.47 Aligned_cols=125 Identities=10% Similarity=0.061 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHh--hhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCC-cceeec--cCCC--CchHHHHHH
Q 019615 93 LVLRKAFEKAVVKR--LMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQ-LHSFCI--GLEG--SPDLKAARE 165 (338)
Q Consensus 93 ~~l~~~l~~av~~r--l~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~-~~~~t~--~~~~--~~e~~~A~~ 165 (338)
..+.+.+.++++.. +....++.|++|||.||++++.++.+.... .|.+ +.++++ +... ..|..++++
T Consensus 5 ~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~------~g~~~v~av~vd~g~r~~s~~~~~~v~~ 78 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------FSLKEVALAHFNHMLRESAERDEEFCKE 78 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------TTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH------cCCCEEEEEEEECCCCcccHHHHHHHHH
Confidence 45667777788765 455678999999999999999999875321 1235 666665 3332 246788999
Q ss_pred HHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHH-HHHHHhhhCCCeEEEecCchhh
Q 019615 166 VADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 166 ~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvltG~GgDe 232 (338)
+|+.+|++++++.++...+.+. . ..+. ...+....| .+.+.+.+.|+++++||+.+|+
T Consensus 79 ~a~~lgi~~~v~~~~~~~~~~~-------~-~~~~-e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD 137 (317)
T 1wy5_A 79 FAKERNMKIFVGKEDVRAFAKE-------N-RMSL-EEAGRFLRYKFLKEILESEGFDCIATAHHLND 137 (317)
T ss_dssp HHHHHTCCEEEEECCHHHHHHH-------T-TCCH-HHHHHHHHHHHHHHHHHHTTCSEEECCCCHHH
T ss_pred HHHHcCCcEEEEEEechhhhcc-------C-CCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEeCchhH
Confidence 9999999999998875432211 0 0110 000111223 4556778889999999999885
No 19
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.86 E-value=2.9e-09 Score=96.88 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCCCchHHHHHH-HHHHh
Q 019615 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAARE-VADYL 170 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~-~a~~l 170 (338)
.+.+...+.+++.+. +.+++++||||+||+++++++.+... .++.++++. +....|...+++ +++++
T Consensus 5 ~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~g---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 74 (308)
T 2dpl_A 5 RFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAIG---------DRLHAVFVNTGFLRKGEPEFVVKTFRDEF 74 (308)
T ss_dssp HHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCCCTTHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhhC---------CCEEEEEEcCCCCChHHHHHHHHHHHHHc
Confidence 344444455555554 46899999999999999999988742 356777664 333467777887 56789
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCccc-cCchHHHHHHHHHhhhCCCeEEEecCchhhc
Q 019615 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 171 g~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
|++|+.+.++. .+.+.+.. ...|.... +........+.+.|++.|++++++|+..|.+
T Consensus 75 gi~~~vv~~~~-~f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~ 133 (308)
T 2dpl_A 75 GMNLHYVDAQD-RFFSALKG----VTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDW 133 (308)
T ss_dssp CCEEEEEECHH-HHHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--
T ss_pred CCcEEEEECCH-HHHHhhhC----CCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccc
Confidence 99999988653 22221110 00110000 0001112345566777899999999998743
No 20
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.85 E-value=7.9e-09 Score=97.38 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=73.1
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCC-ceEEEeChhHHHHH-
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTR-HHEFHFTVQEGIDA- 187 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~-~~~v~~~~~~~~~~- 187 (338)
..++++++|||+||++++.++.+.. .++.++++......|...++++|+.+|++ ++++.++ +++.+.
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~G----------~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~~ 73 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQG----------YDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS-REFVEEF 73 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHTT----------EEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHHT
T ss_pred CCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEeCh-HHHHHHH
Confidence 4579999999999999999998752 46778887655457899999999999998 7777765 344332
Q ss_pred HHHHHHhhccCC--ccccCc-h--HHHHHHHHHhhhCCCeEEEecCch
Q 019615 188 LEEVIYHIETYD--VTTIRA-S--TPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 188 l~~~~~~~e~~~--~~~~~~-~--~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
+...+.....+. ..+-.. + .....+.+.|++.|++++++|+.+
T Consensus 74 ~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~ 121 (413)
T 2nz2_A 74 IWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 121 (413)
T ss_dssp HHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 222222111110 000000 1 112345677788899999999987
No 21
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.82 E-value=6.9e-09 Score=97.25 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=72.6
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCC-CceEEEeChhHHHHH-H
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGT-RHHEFHFTVQEGIDA-L 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~-~~~~v~~~~~~~~~~-l 188 (338)
.++.+++|||+|||++++++.+.+ .++.++++......|.+.|+++|+++|+ +|+++++. +++.+. +
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G----------~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvDl~-eef~~~v~ 83 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKG----------FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLR-REFVTDYI 83 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHHTH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCC----------CeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEecH-HHHHHhhh
Confidence 469999999999999999998764 4677877655444789999999999999 89998875 344433 2
Q ss_pred HHHHHhhccCCccccCchH----H--HHHHHHHhhhCCCeEEEecCch
Q 019615 189 EEVIYHIETYDVTTIRAST----P--MFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 189 ~~~~~~~e~~~~~~~~~~~----~--~~~l~~~a~~~g~~vvltG~Gg 230 (338)
...+.....+.. ...... + .-.+.+.|.+.|++.|.+|..+
T Consensus 84 ~p~i~~na~yeg-~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~ 130 (421)
T 1vl2_A 84 FTALLGNAMYEG-RYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATG 130 (421)
T ss_dssp HHHHTTTCCBTT-TBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred hHHHhcCCcccC-ceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCee
Confidence 222221100110 011111 1 1235567788899999999976
No 22
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.82 E-value=6.2e-09 Score=97.25 Aligned_cols=113 Identities=20% Similarity=0.156 Sum_probs=75.1
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--C--------CchHHHHHHHHHHhCCCceEEEe
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--G--------SPDLKAAREVADYLGTRHHEFHF 179 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~--------~~e~~~A~~~a~~lg~~~~~v~~ 179 (338)
..++.+++|||+||++++.++.+.+ .++.++++... + ..|...|+++|+.+|++|+++++
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~ 78 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQG----------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNF 78 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC----------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3579999999999999999998764 45666666432 1 14678899999999999999998
Q ss_pred ChhHHHHH-HHHHHHh---hccCCccccCchHH--HHHHHHHhhhCCCeEEEecCchhhcc
Q 019615 180 TVQEGIDA-LEEVIYH---IETYDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGSDEIF 234 (338)
Q Consensus 180 ~~~~~~~~-l~~~~~~---~e~~~~~~~~~~~~--~~~l~~~a~~~g~~vvltG~GgDelf 234 (338)
+. ++.+. +...+.. -.+|+ +++.+... +..+.+.|.+.|++++.||+.+|...
T Consensus 79 ~~-~~~~~v~~~~l~~y~~G~tpn-pc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~ 137 (376)
T 2hma_A 79 EK-EYWDRVFEYFLAEYRAGRTPN-PDVMCNKEIKFKAFLDYAITLGADYVATGHYARVAR 137 (376)
T ss_dssp HH-HHHHHTHHHHHHHHHTTCCCC-HHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEE
T ss_pred hH-HHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhh
Confidence 64 33222 1111111 12232 12211111 12456778889999999999998764
No 23
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.80 E-value=1.7e-08 Score=94.86 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=72.5
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCC-CceEEEeChhHHHHH-HH
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGT-RHHEFHFTVQEGIDA-LE 189 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~-~~~~v~~~~~~~~~~-l~ 189 (338)
++++++|||+||++++.++.+... .++.++++......|...++++|+.+|+ +++++.++ +++.+. ..
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~g---------~~V~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~~~~ 71 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETYR---------AEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLK-EEFVRDFVF 71 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHT---------CEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECH-HHHHHHTHH
T ss_pred cEEEEEeChHHHHHHHHHHHHhhC---------CcEEEEEEeCCCHHHHHHHHHHHHHhCCCeEEEEeCc-HHHHHHhhH
Confidence 589999999999999999987632 4577777654435689999999999999 68887765 334332 11
Q ss_pred HHHHhhccC----CccccCch-HHHHHHHHHhhhCCCeEEEecCchh
Q 019615 190 EVIYHIETY----DVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSD 231 (338)
Q Consensus 190 ~~~~~~e~~----~~~~~~~~-~~~~~l~~~a~~~g~~vvltG~GgD 231 (338)
..+.....+ ......+. .....+.+.|++.|++++++|+.+|
T Consensus 72 ~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 72 PMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 222211111 10000011 1123466778888999999999986
No 24
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.80 E-value=6.5e-09 Score=92.79 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhh-hhcCCCcceeeccCCCCchHHHHHHHHHHh
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAA-CQWGSQLHSFCIGLEGSPDLKAAREVADYL 170 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~e~~~A~~~a~~l 170 (338)
++.+.+.|++.+++. ....+.+.||||+||+++++++++....-... ...+.++.++++.+....+...|+++|+.+
T Consensus 24 i~~~v~~L~d~l~~~--g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~~~~~~A~~~a~~l 101 (279)
T 3q4g_A 24 IERRVAFIKRKLTEA--RYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDEDEAQLALSFI 101 (279)
T ss_dssp HHHHHHHHHHHHHHH--TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCChHHHHHHHHHHHHh
Confidence 444445555555442 23568999999999999999876653110000 000125667776654445788999999999
Q ss_pred CC-CceEEEeChhHHHHHHHH----HHH-hh-----ccCCccccCc---hHHHHHHHHHhhhCCCeEEEecCchhhcccC
Q 019615 171 GT-RHHEFHFTVQEGIDALEE----VIY-HI-----ETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGG 236 (338)
Q Consensus 171 g~-~~~~v~~~~~~~~~~l~~----~~~-~~-----e~~~~~~~~~---~~~~~~l~~~a~~~g~~vvltG~GgDelf~G 236 (338)
|+ +|+++++++ ..+.+.. ... .. ..+......+ .+-+-.+...|.+.|.-|+=||+ .+|++.|
T Consensus 102 gi~~~~~i~i~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn-~sE~~~G 178 (279)
T 3q4g_A 102 RPTHSVSVNIKA--GVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDH-SAENITG 178 (279)
T ss_dssp CCSEEEECCCHH--HHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHT
T ss_pred CCCeEEEEECHH--HHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCcc-HHhhhcc
Confidence 99 888877653 2332221 111 00 0011000001 11123344556667775555555 6678889
Q ss_pred Ccccc
Q 019615 237 YLYFH 241 (338)
Q Consensus 237 y~~~~ 241 (338)
|....
T Consensus 179 y~Tky 183 (279)
T 3q4g_A 179 FYTKF 183 (279)
T ss_dssp CSCTT
T ss_pred chhhc
Confidence 87644
No 25
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.71 E-value=2.4e-08 Score=93.35 Aligned_cols=112 Identities=23% Similarity=0.222 Sum_probs=73.2
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--C--------CchHHHHHHHHHHhCCCceEEEe
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--G--------SPDLKAAREVADYLGTRHHEFHF 179 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~--------~~e~~~A~~~a~~lg~~~~~v~~ 179 (338)
..++.+++|||+||+++++++.+.. .++.++++... . ..|...|+++|+.+|++++++++
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQG----------YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTTC----------CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHcC----------CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4579999999999999999998763 46777776431 1 14678899999999999999987
Q ss_pred ChhHHHHHH-HHHHHh---hccCCccccCchHH--HHHHHHHhhh-CCCeEEEecCchhhc
Q 019615 180 TVQEGIDAL-EEVIYH---IETYDVTTIRASTP--MFLMSRKIKS-LGVKMVISGEGSDEI 233 (338)
Q Consensus 180 ~~~~~~~~l-~~~~~~---~e~~~~~~~~~~~~--~~~l~~~a~~-~g~~vvltG~GgDel 233 (338)
+. ++.+.+ ...+.. -.+|+ +++.+... +..+.+.|.+ .|++.+.||+.+|..
T Consensus 87 ~~-~f~~~v~~~~~~ey~~G~tpn-pc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~ 145 (380)
T 2der_A 87 AA-EYWDNVFELFLAEYKAGRTPN-PDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRA 145 (380)
T ss_dssp HH-HHHHHTHHHHHHHHHTTCCCC-HHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEE
T ss_pred cH-HHHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccc
Confidence 63 332221 111111 12232 12211111 1234566676 899999999998864
No 26
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=98.70 E-value=1.8e-08 Score=89.96 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=51.4
Q ss_pred EEEEEEECCCCEEEEEEcc-CCCcceEEEEecC--CeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEEe
Q 019615 6 FSFVLLDTRDKSFIAARDA-IGVTPLYMGWGLD--GSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRW 75 (338)
Q Consensus 6 fa~~i~D~~~~~l~l~rD~-~G~~pLyy~~~~~--~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~ 75 (338)
|+|+++|. ++|+++||+ +|++||+|+...+ +.++||||. |......++.|+||+++.++++.++.+
T Consensus 187 ~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~~~~~v~pGeiv~i~~~~v~~~ 255 (274)
T 3mdn_A 187 LSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEGDWTELRPGRMLTIGAEGAAER 255 (274)
T ss_dssp EEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCSCCEECCSSEEEEEETTEEEEE
T ss_pred EEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCceEEEECcCEEEEEeCCeEEEE
Confidence 99999985 689999999 9999955555433 789999998 333346799999999999987765443
No 27
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.63 E-value=6e-08 Score=91.85 Aligned_cols=112 Identities=19% Similarity=0.125 Sum_probs=73.1
Q ss_pred hhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCC-CceEEEeChhH
Q 019615 107 LMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGT-RHHEFHFTVQE 183 (338)
Q Consensus 107 l~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~-~~~~v~~~~~~ 183 (338)
+....+|++++|||+||++++.++.+.+ .++.++++ +.....|.+.|+++|+.+|+ +|+++++. ++
T Consensus 7 l~~~~KVvVA~SGGlDSSvll~~L~e~G----------~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~-ee 75 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCR-KQ 75 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECH-HH
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeCh-HH
Confidence 4456789999999999999999998753 46777776 43334588999999999999 89998875 44
Q ss_pred HHHHHHHHHHhhccC--Ccc-ccCchHH------HHHHHHHhhhCCCeEEEecCc
Q 019615 184 GIDALEEVIYHIETY--DVT-TIRASTP------MFLMSRKIKSLGVKMVISGEG 229 (338)
Q Consensus 184 ~~~~l~~~~~~~e~~--~~~-~~~~~~~------~~~l~~~a~~~g~~vvltG~G 229 (338)
+.+.+-..+.....+ ... +..+..+ .-.+.+.|++.|++.+.+|+.
T Consensus 76 f~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht 130 (455)
T 1k92_A 76 LVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGST 130 (455)
T ss_dssp HHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 443211222211111 000 0111111 124557788899999999995
No 28
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.63 E-value=2.8e-08 Score=88.75 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=74.1
Q ss_pred HHHHHhhhc--CCceEEEecCcccHHHHHHHHHHHh---chhhhhhhcCC--CcceeeccCCCCchHHHHHHHHHHhC-C
Q 019615 101 KAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYL---ADSEAACQWGS--QLHSFCIGLEGSPDLKAAREVADYLG-T 172 (338)
Q Consensus 101 ~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~---~~~~~~~~~~~--~~~~~t~~~~~~~e~~~A~~~a~~lg-~ 172 (338)
+.++.++.. ...+.+.||||+||++++++++... ... +. .+.++++.+....|...|+++|+.+| +
T Consensus 35 ~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~------~~~~~viav~~p~~~~~~~~dA~~~a~~lg~i 108 (285)
T 3dpi_A 35 GFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRAS------GYDARFVAMRLPYGAQHDEADARRALAFVRAD 108 (285)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHT------TCCCEEEEEECCSCC---CHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhccc------CcccEEEEEEcCCCCHHHHHHHHHHHHHcCCC
Confidence 445555432 3569999999999999987776542 111 12 35666665433356778999999999 6
Q ss_pred CceEEEeChhHHHHHHHHHHHhhc-cCC-----c---cccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccc
Q 019615 173 RHHEFHFTVQEGIDALEEVIYHIE-TYD-----V---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 241 (338)
Q Consensus 173 ~~~~v~~~~~~~~~~l~~~~~~~e-~~~-----~---~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~ 241 (338)
+|+++++++ ..+.+.+.+.... ++. . .++...+-+-.+...|.+.|.-|+-||+ .+|++.||....
T Consensus 109 ~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn-~sE~~~Gy~T~~ 183 (285)
T 3dpi_A 109 ETLTVDVKP--AADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDH-AAESVMGFFTKF 183 (285)
T ss_dssp EEEECCCHH--HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHHHHHHHCC
T ss_pred cEEEEEChH--HHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCcc-HHhhhCCccccc
Confidence 888887654 2333222221110 010 0 0000111223455566778886666666 456777876543
No 29
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.59 E-value=1.5e-07 Score=90.38 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=76.9
Q ss_pred HHHHHHHh--hhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCC---CchHHHHHHHHHHhC
Q 019615 99 FEKAVVKR--LMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEG---SPDLKAAREVADYLG 171 (338)
Q Consensus 99 l~~av~~r--l~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~---~~e~~~A~~~a~~lg 171 (338)
+.+.+++. +....++.|++|||.||++++.++.+..... +.++.++++ +..+ ..|..+++++|+.+|
T Consensus 5 v~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~------~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 5 VRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW------KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR 78 (464)
T ss_dssp HHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT------TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc------CCeEEEEEEECCCCccccHHHHHHHHHHHHHcC
Confidence 44555543 3456789999999999999999998753211 245666655 4432 146788999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHH-HHHHHHhhhCCCeEEEecCchhh
Q 019615 172 TRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 172 ~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~vvltG~GgDe 232 (338)
++++++.++...+.+. ..... +..+.... .++.+.+.+.|+.+++||+.+|+
T Consensus 79 i~~~v~~~~~~~~~~~--------~~~~~-e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD 131 (464)
T 3a2k_A 79 ILCETAQIDVPAFQRS--------AGLGA-QEAARICRYRFFAELMEKHQAGYVAVGHHGDD 131 (464)
T ss_dssp CEEEEEECCCHHHHTT--------TTCCS-HHHHHHHHHHHHHHHHHTTTCCEEECCCCHHH
T ss_pred CcEEEEEechhhhhhc--------cCCCH-HHHHHHHHHHHHHHHHHHcCcCEEEEeCChHH
Confidence 9999998875332110 00110 00011112 24556677889999999999885
No 30
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.58 E-value=1.6e-07 Score=91.67 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHH-HHHHh
Q 019615 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAARE-VADYL 170 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~-~a~~l 170 (338)
.+.+.+.+.++..+.. .++.++||||+||+++++++.+... .++.++++ +.....|...+.+ +|+++
T Consensus 215 ~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~G---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 284 (527)
T 3tqi_A 215 HIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAIG---------DQLVCVLVDTGLLRLNEVDEVLNVFQKHL 284 (527)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHHG---------GGEEEEEECCSCSCTTHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHhC---------CeEEEEEeccCCCChhHHHHHHHHHHHHc
Confidence 3334444555555544 7899999999999999999988742 35777765 4444467777765 99999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHH-HHHHHhhhCCCeEEEecCchhhcc
Q 019615 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIF 234 (338)
Q Consensus 171 g~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvltG~GgDelf 234 (338)
|++++.++++. .+.+.+. ....+..........++ .+.+.|++.|++++++|+..|++.
T Consensus 285 gi~~~vv~~~~-~~~~~l~----g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~ 344 (527)
T 3tqi_A 285 GAKVICVDAKD-RFMKALK----GISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVI 344 (527)
T ss_dssp CCEEEEECCHH-HHHSSSS----SCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHH
T ss_pred CCcEEEEeChH-HHHHhhc----CCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccc
Confidence 99999887542 1111110 00000000000000112 344567788999999999888764
No 31
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.53 E-value=1.9e-07 Score=91.04 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccC--CCCchHHHHHH-HHH
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGSPDLKAARE-VAD 168 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~e~~~A~~-~a~ 168 (338)
.+.+.+.+.+.++..+.. .++.++||||+||+++++++.+... .++.++++.. ....|.+.+.+ +|+
T Consensus 210 ~~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~G---------~~v~av~v~~g~~~~~e~~~~~~~la~ 279 (525)
T 1gpm_A 210 PAKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAIG---------KNLTCVFVDNGLLRLNEAEQVLDMFGD 279 (525)
T ss_dssp HHHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCSCTTHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHhC---------CCEEEEEEeCCCCCchHHHHHHHHHHH
Confidence 345555555666666544 6899999999999999999988742 3577777643 33457777755 799
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCch-HHHHHHHHHhhhC-CCeEEEecCchh
Q 019615 169 YLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSL-GVKMVISGEGSD 231 (338)
Q Consensus 169 ~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~-g~~vvltG~GgD 231 (338)
++|++++.++++. .+.+.+.. ...|........ .-...+.+.|++. |++.+++|+..|
T Consensus 280 ~lgi~~~~v~~~~-~f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~ 339 (525)
T 1gpm_A 280 HFGLNIVHVPAED-RFLSALAG----ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYP 339 (525)
T ss_dssp TTCCCEEEEECHH-HHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHH
T ss_pred HhCCcEEEEeccH-HHHHhhcC----CCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCc
Confidence 9999999988753 23232211 111110000000 1112345567777 899999999644
No 32
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=98.49 E-value=6e-07 Score=88.17 Aligned_cols=139 Identities=21% Similarity=0.215 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhhhcC--CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCc--hHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMTD--VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSP--DLKAAREVA 167 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~--~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--e~~~A~~~a 167 (338)
.+++.+.+.-.++.+++.. ..+.+.||||+||+++++++.+.+.. .++.++++....+. ....|+.+|
T Consensus 280 ~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~--------~~v~~v~mp~~~ts~~t~~~a~~la 351 (565)
T 4f4h_A 280 EAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA--------ERVRAVMMPSRYTAGISTTDAADMA 351 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC--------ccEEEEeccccccccchHHHHHHHH
Confidence 4567777777888877643 56899999999999999999988754 36888888655443 357799999
Q ss_pred HHhCCCceEEEeChhHHHHHHHHHHHhh-cc-CCcc---ccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccc
Q 019615 168 DYLGTRHHEFHFTVQEGIDALEEVIYHI-ET-YDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 241 (338)
Q Consensus 168 ~~lg~~~~~v~~~~~~~~~~l~~~~~~~-e~-~~~~---~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~ 241 (338)
+.+|+.++++.+++ ..+.+...+... .. .... ++.+..-+-.+...+.+.|.-|+=||+ -+|+.-||..+.
T Consensus 352 ~~lg~~~~~i~i~~--~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn-~sE~a~Gy~T~~ 427 (565)
T 4f4h_A 352 RRVGVRYDEIAIAP--MFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGN-KSEMAVGYCTLY 427 (565)
T ss_dssp HHHTCEEEECCCHH--HHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC-HHHHHHTCSCTT
T ss_pred HHhCCceeeeecch--HHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCc-hhhHhhcccccc
Confidence 99999999987753 344443333221 11 0000 011111123344556667777777775 567888998654
No 33
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.48 E-value=4e-07 Score=78.33 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=66.9
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l 188 (338)
.++.|++|||.||++++.++.+.. .++..+++ +.....+..+++++|+.+|++++++..+.. ..+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----------~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~~-~~~~~ 113 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES-AAWQE 113 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----------TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----------CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCCC-HHHHH
Confidence 479999999999999999998875 24555554 433224578999999999999999876532 11111
Q ss_pred HHHHHhhccCCc-cccCchHH----HHHHHHHhhhCCCeEEEecCchhh
Q 019615 189 EEVIYHIETYDV-TTIRASTP----MFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 189 ~~~~~~~e~~~~-~~~~~~~~----~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
.+ .. ..+.. +....... ...+.+.+++.|+.++++|.-.|+
T Consensus 114 ~~--~g-~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd 159 (215)
T 1sur_A 114 AR--YG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 159 (215)
T ss_dssp HH--HC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS
T ss_pred Hh--cC-CCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhh
Confidence 11 00 00000 00000000 012345566778889999999988
No 34
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.48 E-value=1.6e-07 Score=94.19 Aligned_cols=83 Identities=22% Similarity=0.196 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhhcC--CceEEEecCcccHHHHHHHHHHHhchhhhhhhcC---CCcceeeccCCC--CchHHHHHH
Q 019615 93 LVLRKAFEKAVVKRLMTD--VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWG---SQLHSFCIGLEG--SPDLKAARE 165 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~~--~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~---~~~~~~t~~~~~--~~e~~~A~~ 165 (338)
+++.+.+...+++++... ..+.+.||||+||++.+.++++....- | .++.++++.... ..+...|++
T Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~l------g~~~~~v~~v~m~~~~~~~~~~~~A~~ 415 (680)
T 3sdb_A 342 YEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDRE------GRPRSDILAFALPGFATGEHTKNNAIK 415 (680)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHT------TCCGGGEEEEECCC--------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHh------CCCCceEEEEEECCCCCCHHHHHHHHH
Confidence 566677777787777644 469999999999998777766553110 1 357788776432 346778999
Q ss_pred HHHHhCCCceEEEeCh
Q 019615 166 VADYLGTRHHEFHFTV 181 (338)
Q Consensus 166 ~a~~lg~~~~~v~~~~ 181 (338)
+|+.+|++|+++++++
T Consensus 416 la~~lgi~~~~i~i~~ 431 (680)
T 3sdb_A 416 LARALGVTFSEIDIGD 431 (680)
T ss_dssp HHHHHTCEEEECCCHH
T ss_pred HHHHcCCCEEEEECHH
Confidence 9999999999987753
No 35
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.47 E-value=5.2e-07 Score=87.52 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhC
Q 019615 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLG 171 (338)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg 171 (338)
.+.+...+.+++.+. +.++.+++|||+||+++++++.+.+ .++.++++ ++....|.+.++++|+.+|
T Consensus 194 ~~~~~~i~~ir~~~~-~~kvvvalSGGvDSsvla~ll~~~g----------~~v~av~vd~g~~~~~e~~~v~~~~~~lg 262 (503)
T 2ywb_A 194 HVLEELLREVRERAG-KDRVLLAVSGGVDSSTLALLLAKAG----------VDHLAVFVDHGLLRLGEREEVEGALRALG 262 (503)
T ss_dssp HHHHHHHHHHHHHHT-TSEEEEEECSSHHHHHHHHHHHHHT----------CEEEEEEEECSCSCTTHHHHHHHHHHHTT
T ss_pred hhhHHHHHhhhhhcc-CccEEEEecCCcchHHHHHHHHHcC----------CeEEEEEEeCCCCChHHHHHHHHHHHHhC
Confidence 333344445555553 3689999999999999999998873 35667665 3333468889999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCccccCch-HHHHHHHHHhhhC-CCeEEEecCchhhc
Q 019615 172 TRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSL-GVKMVISGEGSDEI 233 (338)
Q Consensus 172 ~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~-g~~vvltG~GgDel 233 (338)
++++.+.++. .+.+.+. ....|........ .-...+.+.|++. |++.+++|+..|.+
T Consensus 263 i~~~vv~~~~-~f~~~l~----g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~ 321 (503)
T 2ywb_A 263 VNLLVVDAKE-RFLKALK----GVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDV 321 (503)
T ss_dssp CCEEEEECHH-HHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHH
T ss_pred CCEEEEECcH-HHHHhhc----CCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccc
Confidence 9999988653 2222211 0001100000000 0112344556666 89999999976543
No 36
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.40 E-value=4.8e-07 Score=90.13 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhhhc--CCceEEEecCcccHHHHHHHHH-------HHhchhhhhhhcC------------------
Q 019615 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVAS-------RYLADSEAACQWG------------------ 144 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~-------~~~~~~~~~~~~~------------------ 144 (338)
.+++...+...++.+++. ...+.+.||||+|||++|+++. +.....+......
T Consensus 283 ~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T 3ilv_A 283 EFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQ 362 (634)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccc
Confidence 456667766777776643 3579999999999999999832 3332210000000
Q ss_pred ------CCcceeeccCCC--CchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHh-h-ccCCcc--cc--Cch---H
Q 019615 145 ------SQLHSFCIGLEG--SPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYH-I-ETYDVT--TI--RAS---T 207 (338)
Q Consensus 145 ------~~~~~~t~~~~~--~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~-~-e~~~~~--~~--~~~---~ 207 (338)
.-++|+.++... ..+...|+++|+.+|++|+++++.+ ..+.+.+.+.. . .+|... .+ .+. +
T Consensus 363 ~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~--~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~ 440 (634)
T 3ilv_A 363 AKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDE--EIEQYKATIENVIERPLTWEKDDITLQNIQARG 440 (634)
T ss_dssp HHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHH--HHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHT
T ss_pred hhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHH--HHHHHHHHHHHhhCCCcccccCcchhhhhhHHH
Confidence 004455554332 3467889999999999999998764 22222221111 1 111110 00 000 0
Q ss_pred HHHHHHHHhhhCCCeEEEecCchhhcccCCccc
Q 019615 208 PMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (338)
Q Consensus 208 ~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~ 240 (338)
-+-.+...|.+.|..|+-||+ -||+.-||...
T Consensus 441 R~~~l~~~A~~~g~lvlgTgn-ksE~~~Gy~T~ 472 (634)
T 3ilv_A 441 RAPIIWMLTNVKQALLITTSN-RSEGDVGYATM 472 (634)
T ss_dssp THHHHHHHHHHHTCEEBCCCC-HHHHHTTCSCT
T ss_pred HHHHHHHHHHhcCCEEeccCc-hhhHhhCCccc
Confidence 011233445566776665555 67888888654
No 37
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.39 E-value=3.8e-07 Score=86.29 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=68.6
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCC--C-CchHHHHHHHHHHh-----CCCceEEEeChh
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--G-SPDLKAAREVADYL-----GTRHHEFHFTVQ 182 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~-~~e~~~A~~~a~~l-----g~~~~~v~~~~~ 182 (338)
.++.+++|||+||++++.++.+.+ .++.++++... . ..+...++++|+.+ |++++.++++..
T Consensus 188 ~kvlvalSGGvDS~vll~ll~~~G----------~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~ 257 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTMKRG----------VSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEV 257 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHBT----------EEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHH
T ss_pred CeEEEEeCCCChHHHHHHHHHHcC----------CcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcHH
Confidence 358899999999999999998753 35667665432 2 23567788889998 899999886532
Q ss_pred HHHHHHHHHHHhhccCCccccCchHHHH-HHHHHhhhCCCeEEEecCchhhc
Q 019615 183 EGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 183 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvltG~GgDel 233 (338)
...+. .... .+..++.+...++ .+.+.|.+.|+.+++||+..|.+
T Consensus 258 --~~~i~---~~~~-~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ 303 (413)
T 2c5s_A 258 --QKTIN---KEIP-SSYSMTVMRRMMMRITERIAEERNALAITTGESLGQV 303 (413)
T ss_dssp --HHHHH---HHSC-GGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSST
T ss_pred --HHHHH---hcCC-cccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhh
Confidence 11111 1111 0111111111223 34566788899999999988765
No 38
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.37 E-value=2.8e-06 Score=85.11 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeecc--CCCCchHHHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADY 169 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~~a~~ 169 (338)
.+.+.+.+.+.++..+. +.++.++||||+||+++++++.+...+ .++.++++. +....|.+.|+++|+.
T Consensus 223 ~~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~~alG~--------~~V~aV~vd~g~~~~~e~e~a~~~a~~ 293 (697)
T 2vxo_A 223 VQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNRALNQ--------EQVIAVHIDNGFMRKRESQSVEEALKK 293 (697)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHHSCG--------GGEEEEEEECSCCCSSTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHHHhcCC--------ceEEEEEeccccCCcchHHHHHHHHHH
Confidence 34555556666666654 468999999999999999999887521 357777764 3334678899999999
Q ss_pred hCCCceEEEeC
Q 019615 170 LGTRHHEFHFT 180 (338)
Q Consensus 170 lg~~~~~v~~~ 180 (338)
+|++++.++++
T Consensus 294 lGI~~~vvdi~ 304 (697)
T 2vxo_A 294 LGIQVKVINAA 304 (697)
T ss_dssp TTCCEEEEECH
T ss_pred hCCcEEEecch
Confidence 99999999875
No 39
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.34 E-value=2.2e-06 Score=81.58 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=69.5
Q ss_pred HHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCC-C-chHHHHHHHHHHhCCCceEEE
Q 019615 103 VVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEG-S-PDLKAAREVADYLGTRHHEFH 178 (338)
Q Consensus 103 v~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~-~-~e~~~A~~~a~~lg~~~~~v~ 178 (338)
+.+.+....++.|++|||.||++++.++.+..... .+.++.++++ +... + .|..+++++|+.+|++++++.
T Consensus 6 l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-----PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-----TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-----CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 34445566789999999999999999998754210 0235666655 3432 2 357889999999999999987
Q ss_pred eChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhh
Q 019615 179 FTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 179 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
++... ....+. ..+....|.+...+.+ ++.+++||+.+|.
T Consensus 81 ~~~~~----------~~~~~e---~~aR~~Ry~~l~~~a~-~~~~i~tgH~~dD 120 (433)
T 1ni5_A 81 VQLAQ----------EGLGIE---AQARQARYQAFARTLL-PGEVLVTAQHLDD 120 (433)
T ss_dssp CCCCC----------SSSTTT---THHHHHHHHHHHHTCC-TTEEEECCCCHHH
T ss_pred ecCCC----------CCCCHH---HHHHHHHHHHHHHHHh-hCCeEEeeccchH
Confidence 76420 000011 0011122333333333 4899999999885
No 40
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.26 E-value=1.9e-06 Score=84.42 Aligned_cols=126 Identities=13% Similarity=0.184 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHH-HHHHHH
Q 019615 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAA-REVADY 169 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A-~~~a~~ 169 (338)
+.+.+...+.+++. ..+.++.++||||+||+++++++.+... .++.++++ +.....|...+ +.+|++
T Consensus 239 ~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~G---------~~v~~v~vd~g~~~~~e~~~~~~~~~~~ 308 (556)
T 3uow_A 239 IRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIFK---------ERFFGIFIDNGLLRKNEAENVYTFLKST 308 (556)
T ss_dssp HHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCSCTTHHHHHHHHHHHH
T ss_pred ccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHhC---------CeEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 34444444555555 3367899999999999999999988753 35777765 44344566666 568999
Q ss_pred h-CCCceEEEeChhHHHHHHHHHHHhhccCCcc-ccCchHHHHHHHHHhhhCCC----eEEEecCchhhc
Q 019615 170 L-GTRHHEFHFTVQEGIDALEEVIYHIETYDVT-TIRASTPMFLMSRKIKSLGV----KMVISGEGSDEI 233 (338)
Q Consensus 170 l-g~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~-~~~~~~~~~~l~~~a~~~g~----~vvltG~GgDel 233 (338)
+ |++++.++++. .+...+.. ...|... .+........+.+.|++.|. +.+.+|...|++
T Consensus 309 l~gi~~~~vd~~~-~f~~~l~g----~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ 373 (556)
T 3uow_A 309 FPDMNITKIDASE-NFLSNLQG----VTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDI 373 (556)
T ss_dssp CTTSEEEEEECHH-HHHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHH
T ss_pred cCCCCeEEeccHH-HHHHhhcC----CCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHH
Confidence 9 99999998753 22222110 0001000 00000111233455666665 899999876654
No 41
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.13 E-value=5.6e-06 Score=72.96 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=66.0
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l 188 (338)
.++.+++|||.||++++.++.+... ++..+++ +.....+..+++++++.+|++++++..+.. ..+..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~~----------~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~-~~~~~ 114 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIRP----------DIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES-AAWQE 114 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHST----------TCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC-HHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhCC----------CCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC-HHHHH
Confidence 4799999999999999999988752 4555554 333224578999999999999888765421 11111
Q ss_pred HHHHHhhccCCc-cccCchHH----HHHHHHHhhhCCCeEEEecCchhhc
Q 019615 189 EEVIYHIETYDV-TTIRASTP----MFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 189 ~~~~~~~e~~~~-~~~~~~~~----~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
.. .. ..+.. +..+.... ...+.+.+++.|+.+++||.-.|+-
T Consensus 115 ~~--~g-~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds 161 (252)
T 2o8v_A 115 AR--YG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS 161 (252)
T ss_dssp HH--TC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTT
T ss_pred HH--cC-CccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccccc
Confidence 10 00 00000 00000000 0123455667788899999999883
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=98.13 E-value=7.2e-06 Score=74.89 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=66.3
Q ss_pred CCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 019615 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (338)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~ 187 (338)
..++.+++|||.||++++.++.+..... +.++..+++ +........+++++|+.+|++++.+..... ..
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~------~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~--~~- 116 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPG------KLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG--VA- 116 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTS------CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC--------
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhcccc------CCCEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH--Hh-
Confidence 3578999999999999999998875321 134555554 333234578899999999999888764321 10
Q ss_pred HHHHHHhhccCCccccCch-HH-HHHHHHHhhhCCCeEEEecCchhhcc
Q 019615 188 LEEVIYHIETYDVTTIRAS-TP-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (338)
Q Consensus 188 l~~~~~~~e~~~~~~~~~~-~~-~~~l~~~a~~~g~~vvltG~GgDelf 234 (338)
.-. ..+......+. .. ...+.+.+++.|++++++|.-.||.-
T Consensus 117 --~G~---~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~ 160 (325)
T 1zun_A 117 --QGI---NPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK 160 (325)
T ss_dssp --------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG
T ss_pred --cCC---CccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhh
Confidence 000 00000000000 00 11344555666899999999998753
No 43
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.97 E-value=1.8e-05 Score=70.13 Aligned_cols=112 Identities=12% Similarity=0.021 Sum_probs=67.5
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCC----CceEEEeCh---
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGT----RHHEFHFTV--- 181 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~----~~~~v~~~~--- 181 (338)
.++.+++|||.||++++.++.+..... .++..+++ +........+++++++++|+ +++++..+.
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~~-------~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~ 114 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEKY-------YMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCES 114 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTTS-------CCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCccC-------CCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCccC
Confidence 479999999999999999998876310 14555554 43323457899999999999 888876542
Q ss_pred -hHHHHHHHHHHHhhccCCccccCchHH-HHHHHHHhhhCCCeEEEecCchhhc
Q 019615 182 -QEGIDALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEI 233 (338)
Q Consensus 182 -~~~~~~l~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvltG~GgDel 233 (338)
+++.+..-...+... +. ..+.+. ..-+.+.+++.|++++++|.-.||-
T Consensus 115 ~~~~~~~~G~~~~~~~-~~---~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds 164 (261)
T 2oq2_A 115 EADFASKYGDFLWEKD-DD---KYDYLAKVEPAHRAYKELHISAVFTGRRKSQG 164 (261)
T ss_dssp HHHHHHHHCTTHHHHC-HH---HHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC
T ss_pred HHHHHHHhCCCccccC-hH---HHHHHHhHHHHHHHHHHcCCCEEEEeccccch
Confidence 121110000001000 00 000000 0123455667799999999999985
No 44
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.81 E-value=2.9e-05 Score=70.27 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=57.0
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHh-------CCCceEEE-eChh
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYL-------GTRHHEFH-FTVQ 182 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~l-------g~~~~~v~-~~~~ 182 (338)
.++.++||| +||++.++++.+.+ ..+.+.++.+ +..+...++++|+.+ +++++.++ +..
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~G----------~~v~~v~~~~-~~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~~- 246 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKRG----------VEVIPVYIGK-DDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDR- 246 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHBT----------CEEEEEEESC-SSHHHHHHHHHHHHHHTTCTTSCCCCEEESSHHH-
T ss_pred CcEEEEEeC-CcHHHHHHHHHhCC----------CeEEEEEEEE-CHHHHHHHHHHHHHHhhhccCCCCcEEEeCCCHH-
Confidence 367899999 99999999988764 4566666652 234567789999998 66666654 211
Q ss_pred HHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhh
Q 019615 183 EGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (338)
Q Consensus 183 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDe 232 (338)
. + +.|.+.|++.++||+.++.
T Consensus 247 ----~----------------------~---~~A~~~ga~~I~tG~~~~~ 267 (307)
T 1vbk_A 247 ----V----------------------L---KLIRDFGVKGVIKGLRPND 267 (307)
T ss_dssp ----H----------------------H---HHHHHHTCCEEECCCCGGG
T ss_pred ----H----------------------H---HHHHHcCCCEEEECcccch
Confidence 0 0 4455679999999998654
No 45
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.77 E-value=2.5e-05 Score=67.70 Aligned_cols=60 Identities=18% Similarity=0.071 Sum_probs=43.6
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceee--ccCC------CCchHHHHHHHHHHhCCCceEEEeCh
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLE------GSPDLKAAREVADYLGTRHHEFHFTV 181 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t--~~~~------~~~e~~~A~~~a~~lg~~~~~v~~~~ 181 (338)
++.+++|||.||++.++++.+.+ .++.+.. ++.. ...+.+.|+++|+.+|++++.+++..
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G----------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR----------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred EEEEEecCcHHHHHHHHHHHHcC----------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 68999999999999999888764 3454432 2221 12456789999999999999998764
No 46
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=97.56 E-value=8.4e-05 Score=78.83 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=54.4
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCc-E--EeCCCcEEEec
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERF-I--SFPPGHIYSSK 68 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i-~--~l~pG~~~~~~ 68 (338)
.++|.|++++-|. +.+..+|||.|.|||.|....++.+++|||..+|--....+ + +|.||+.+.++
T Consensus 326 ~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id 394 (1479)
T 1ea0_A 326 PWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp CCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEEEEE
T ss_pred cCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCcchheeeccCCCCCeEEEEE
Confidence 3689999999664 79999999999999999886567899999999884333333 3 89999998875
No 47
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=97.51 E-value=0.00014 Score=77.39 Aligned_cols=66 Identities=23% Similarity=0.181 Sum_probs=54.3
Q ss_pred CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCC-cE--EeCCCcEEEec
Q 019615 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCER-FI--SFPPGHIYSSK 68 (338)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~-i~--~l~pG~~~~~~ 68 (338)
.++|.|++++-|. +.+..+|||.|.|||.|....++.+++|||..+|--.... ++ +|.||+.+.++
T Consensus 325 ~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id 393 (1520)
T 1ofd_A 325 PWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVD 393 (1520)
T ss_dssp CCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECCTTCEEEEE
T ss_pred cCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcchheeeccCCCCCeEEEEE
Confidence 3689999999875 7999999999999999988756789999999888433333 23 89999998875
No 48
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=97.12 E-value=0.00047 Score=60.71 Aligned_cols=65 Identities=20% Similarity=0.128 Sum_probs=50.8
Q ss_pred eeEEEEEEECCCCEEEEEEc----------cCCCcceEE-------EE---ecCCeEEEecccchhhhccCCcEEeCCCc
Q 019615 4 GMFSFVLLDTRDKSFIAARD----------AIGVTPLYM-------GW---GLDGSIWFASEMKALSDDCERFISFPPGH 63 (338)
Q Consensus 4 G~fa~~i~D~~~~~l~l~rD----------~~G~~pLyy-------~~---~~~~~~~faSe~~~l~~~~~~i~~l~pG~ 63 (338)
|.|++++.|. .+|+.+|| |+|.+||.. .. ..++.++||||. |- ..+.++.|+||+
T Consensus 168 G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~--l~-~~~~wr~v~pGe 242 (257)
T 1te5_A 168 GVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP--LT-DNENWTLQQSGE 242 (257)
T ss_dssp BCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC--SS-SSSSCEEECTTC
T ss_pred CcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc--cC-CCCCeeEeCCCE
Confidence 8999999875 67999999 999999965 10 113468999995 33 357899999999
Q ss_pred EEEecCCeEE
Q 019615 64 IYSSKQGGLR 73 (338)
Q Consensus 64 ~~~~~~~~~~ 73 (338)
.+.++.+.+.
T Consensus 243 ~v~i~~~~~~ 252 (257)
T 1te5_A 243 WVLWWGGEVL 252 (257)
T ss_dssp EEEEETTEEE
T ss_pred EEEEECCEEE
Confidence 9999877654
No 49
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=97.04 E-value=0.0027 Score=56.33 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=45.7
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeec--cCCCCchHHHHHHHHHHhCCCceEEEeC
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFT 180 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~~a~~lg~~~~~v~~~ 180 (338)
.++.+.+| |.||++++.++.+.. .++..+++ +........+++++++.+|++++++..+
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~----------~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~ 115 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLN----------RNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPD 115 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHC----------TTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCC
T ss_pred CCEEEEee-cHHHHHHHHHHHHhC----------CCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCC
Confidence 57999999 999999999998864 34555554 4432345789999999999999887654
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00084 Score=60.62 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=60.7
Q ss_pred CceEEEecCcccHHHHHHHHHHHhchhh----hhhh-------c-CCCcceeeccCCC-C-chHHHHHHHHHHhCCCceE
Q 019615 111 VPFGVLLSGGLDSSLVAAVASRYLADSE----AACQ-------W-GSQLHSFCIGLEG-S-PDLKAAREVADYLGTRHHE 176 (338)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~----~~~~-------~-~~~~~~~t~~~~~-~-~e~~~A~~~a~~lg~~~~~ 176 (338)
.++++++|||.||++++.++.+.+.+.. ..++ . +.++..+++.... . ...++++++++.+|++++.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v 133 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYE 133 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4799999999999999999887642100 0000 0 1345555553321 2 3568899999999998877
Q ss_pred EEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhh-CCCeEEEecCchhhccc
Q 019615 177 FHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKS-LGVKMVISGEGSDEIFG 235 (338)
Q Consensus 177 v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~-~g~~vvltG~GgDelf~ 235 (338)
+..+.. ....+.+ . +.+.++. .+.+++++|.-.||-.+
T Consensus 134 ~~~~~~-~~~~l~~---------------~-----~~~~~k~~p~~~aii~G~Rrdds~~ 172 (306)
T 2wsi_A 134 SQRQSG-ASVNMAD---------------A-----FRDFIKIYPETEAIVIGIRHTDPFG 172 (306)
T ss_dssp CCC------CCHHH---------------H-----HHHHHHHCTTCCEEECCCCCCSSSC
T ss_pred EeCCcc-ccccHHH---------------H-----HHHHHhhCCCCcEEEEEEecccccc
Confidence 653311 0000000 0 1111222 46789999999998664
No 51
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=96.00 E-value=0.012 Score=52.62 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=40.4
Q ss_pred ceEEEecCcccHHHHHHHHHHHhchh-----hhh------hhc-CCCcceeeccCC-CCch-HHHHHHHHHHhCCCceEE
Q 019615 112 PFGVLLSGGLDSSLVAAVASRYLADS-----EAA------CQW-GSQLHSFCIGLE-GSPD-LKAAREVADYLGTRHHEF 177 (338)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~-----~~~------~~~-~~~~~~~t~~~~-~~~e-~~~A~~~a~~lg~~~~~v 177 (338)
.+++.+|||.||++++.++.+.+... ..+ ... ..++..+.+... ..+| .++..++++++|++.+.+
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v~ 139 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYES 139 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEEC
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEEe
Confidence 59999999999999999998764110 000 000 023445544332 1344 578999999999876554
No 52
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=33.64 E-value=2.4e+02 Score=24.49 Aligned_cols=131 Identities=8% Similarity=-0.005 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHh-chhh--hhh-hcCCCcceeeccCCCCchHHHHHHHHH
Q 019615 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYL-ADSE--AAC-QWGSQLHSFCIGLEGSPDLKAAREVAD 168 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~-~~~~--~~~-~~~~~~~~~t~~~~~~~e~~~A~~~a~ 168 (338)
.++.+.+.+.+.+.+..+..-.+..+||..+..++..+.... .... ... ..|..+.+....+. . ....++
T Consensus 68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~---~---~~~~~~ 141 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHF---S---FEKGRE 141 (397)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCT---H---HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchh---H---HHHHHH
Confidence 456666777777776554445578888888765544332211 0000 000 00122333222222 1 344566
Q ss_pred HhCCCceEEEeChhH--HHHHHHHHHHh-------hccCCccccCchHHHHHHHHHhhhCCCeEEEecCch
Q 019615 169 YLGTRHHEFHFTVQE--GIDALEEVIYH-------IETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 169 ~lg~~~~~v~~~~~~--~~~~l~~~~~~-------~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
.+|.+...+.++.+. -.+.+++.+.. .+.|..++- ...+.-.+.+.+++.|+-+++.+--+
T Consensus 142 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG-~~~~l~~i~~l~~~~~~~li~Dea~~ 211 (397)
T 3f9t_A 142 MMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELG-TIDNIEELSKIAKENNIYIHVDAAFG 211 (397)
T ss_dssp HHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTC-CBCCHHHHHHHHHHHTCEEEEECTTG
T ss_pred HcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCC-CCCCHHHHHHHHHHhCCeEEEEcccc
Confidence 778887777665321 12334443322 112222110 11223446667777888888876543
No 53
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=33.19 E-value=53 Score=18.54 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=13.7
Q ss_pred ceeeEEEEEEECCCCE-EEEE
Q 019615 2 LDGMFSFVLLDTRDKS-FIAA 21 (338)
Q Consensus 2 l~G~fa~~i~D~~~~~-l~l~ 21 (338)
.|=.|.|+|+|..++. |+++
T Consensus 7 ~drPFlf~I~~~~t~~iLF~G 27 (35)
T 2xn6_B 7 IDRSFMLLILERSTRSILFLG 27 (35)
T ss_dssp CCBCEEEEEEETTTTEEEEEE
T ss_pred ecCCEEEEEEECCCCcEEEEE
Confidence 3557888999887775 4444
No 54
>2riv_B Thyroxine-binding globulin; TBG, serpin, cleaved, mutation, glycoprotein, secreted, signaling protein; 1.50A {Homo sapiens} PDB: 2riw_B* 2xn3_B*
Probab=32.13 E-value=53 Score=19.19 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=14.2
Q ss_pred ceeeEEEEEEECCCCE-EEEEE
Q 019615 2 LDGMFSFVLLDTRDKS-FIAAR 22 (338)
Q Consensus 2 l~G~fa~~i~D~~~~~-l~l~r 22 (338)
.|=.|.|+|+|..++. |+++|
T Consensus 12 ~drPFlf~I~~~~t~~iLF~G~ 33 (40)
T 2riv_B 12 IDRSFMLLILERSTRSILFLGK 33 (40)
T ss_dssp CCBCEEEEEEETTTTEEEEEEE
T ss_pred ecCCEEEEEEeCCCCcEEEEEE
Confidence 3557888888887765 45443
No 55
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=31.80 E-value=55 Score=17.80 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=13.1
Q ss_pred eeeEEEEEEECCCCE-EEEE
Q 019615 3 DGMFSFVLLDTRDKS-FIAA 21 (338)
Q Consensus 3 ~G~fa~~i~D~~~~~-l~l~ 21 (338)
|=.|.|+|+|..++. |+++
T Consensus 7 drPFlf~I~~~~t~~iLF~G 26 (31)
T 1hle_B 7 DHPFIFFIRHNPSANILFLG 26 (31)
T ss_dssp CSCEEEEEEETTTTEEEEEE
T ss_pred eCCEEEEEEECCCCcEEEEE
Confidence 456888899887765 4444
No 56
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=31.22 E-value=67 Score=29.58 Aligned_cols=119 Identities=12% Similarity=0.117 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCc
Q 019615 95 LRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRH 174 (338)
Q Consensus 95 l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~ 174 (338)
..+.|++.+.+.... +-++.+++|. +++.+++ ...... |..+.+....+. .-......+++.+|++.
T Consensus 83 ~~~~le~~lA~l~g~--~~~v~~~sG~-~Ai~~al-~al~~~-------Gd~Vi~~~~~y~--~~~~~~~~~~~~~G~~~ 149 (430)
T 3ri6_A 83 TVEDLEQRLKNLTGA--LGVLALGSGM-AAISTAI-LTLARA-------GDSVVTTDRLFG--HTLSLFQKTLPSFGIEV 149 (430)
T ss_dssp HHHHHHHHHHHHHTC--SEEEEESCHH-HHHHHHH-HHHCCT-------TCEEEEETTCCH--HHHHHHHTHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCC--CcEEEECCHH-HHHHHHH-HHHhCC-------CCEEEEcCCCch--hHHHHHHHHHHHcCCEE
Confidence 344555566655433 3478999997 3333333 222322 233433322221 11223344677889887
Q ss_pred eEEEeChhHHHHHHHHHHHh------hccCCccccCchHHHHHHHHHhhhCCCeEEEecCch
Q 019615 175 HEFHFTVQEGIDALEEVIYH------IETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 175 ~~v~~~~~~~~~~l~~~~~~------~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
..+..+ + .+.+++.+.. ++.|.++... ....-.+.+.+++.|+.+++..--+
T Consensus 150 ~~v~~~--d-~~~l~~ai~~~t~~v~~e~p~NptG~-~~dl~~i~~la~~~g~~livD~a~~ 207 (430)
T 3ri6_A 150 RFVDVM--D-SLAVEHACDETTKLLFLETISNPQLQ-VADLEALSKVVHAKGIPLVVDTTMT 207 (430)
T ss_dssp EEECTT--C-HHHHHHHCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHTTTCCEEEECTTS
T ss_pred EEeCCC--C-HHHHHHhhCCCCeEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECCCc
Confidence 776554 2 2333333211 2444332211 1223456777888899888875533
No 57
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=31.11 E-value=49 Score=18.85 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=14.2
Q ss_pred ceeeEEEEEEECCCCE-EEEEE
Q 019615 2 LDGMFSFVLLDTRDKS-FIAAR 22 (338)
Q Consensus 2 l~G~fa~~i~D~~~~~-l~l~r 22 (338)
.|-.|.|+|+|..++. |+++|
T Consensus 8 ~drPFlf~I~~~~t~~iLF~G~ 29 (36)
T 4afx_B 8 IDRPFHFMIYEETSGMLLFLGR 29 (36)
T ss_dssp CCSCEEEEEEETTTTEEEEEEE
T ss_pred eeCCEEEEEEECCCCcEEEEEE
Confidence 4557889999887765 44443
No 58
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=29.37 E-value=62 Score=18.04 Aligned_cols=19 Identities=21% Similarity=0.446 Sum_probs=12.8
Q ss_pred eeeEEEEEEECCCCE-EEEE
Q 019615 3 DGMFSFVLLDTRDKS-FIAA 21 (338)
Q Consensus 3 ~G~fa~~i~D~~~~~-l~l~ 21 (338)
|=.|.|+|+|..++. |+++
T Consensus 8 drPFlf~I~~~~t~~iLF~G 27 (34)
T 2h4p_B 8 DHPFHFFIRHNKSKTILFFG 27 (34)
T ss_dssp CSCEEEEEEETTTTEEEEEE
T ss_pred cCCEEEEEEECCCCeEEEEE
Confidence 446888888887765 3443
No 59
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=28.48 E-value=1.8e+02 Score=24.42 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=22.2
Q ss_pred HHHHHHHhhhCCCeEEEecCchh---hcccCCcc
Q 019615 209 MFLMSRKIKSLGVKMVISGEGSD---EIFGGYLY 239 (338)
Q Consensus 209 ~~~l~~~a~~~g~~vvltG~GgD---elf~Gy~~ 239 (338)
...+++.+...|..|+++|..+| +.|++...
T Consensus 105 v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~ 138 (234)
T 2orv_A 105 IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILN 138 (234)
T ss_dssp HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGG
T ss_pred HHHHHHHHHhCCCEEEEEecccccccCCcccHHH
Confidence 34455666678999999999988 45665543
No 60
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=28.40 E-value=1.1e+02 Score=27.87 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHHHHHHHHHHhCCCc
Q 019615 95 LRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRH 174 (338)
Q Consensus 95 l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~~a~~lg~~~ 174 (338)
..+.|++.+.+... .+-++.++||... +..++...... |..+.+.+..+.. -....+.+++.+|.+.
T Consensus 82 ~~~~l~~~la~~~g--~~~~~~~~sG~~A--i~~al~~l~~~-------Gd~Vi~~~~~y~~--~~~~~~~~~~~~g~~~ 148 (414)
T 3ndn_A 82 TVSVFEERLRLIEG--APAAFATASGMAA--VFTSLGALLGA-------GDRLVAARSLFGS--CFVVCSEILPRWGVQT 148 (414)
T ss_dssp HHHHHHHHHHHHHT--CSEEEEESSHHHH--HHHHHHTTCCT-------TCEEEEESCCCHH--HHHHHHTHHHHTTCEE
T ss_pred HHHHHHHHHHHHHC--CCcEEEECCHHHH--HHHHHHHHhCC-------CCEEEEcCCccch--HHHHHHHHHHHcCcEE
Confidence 44455555555543 2456889999554 33333322221 2344443333321 2233455567788877
Q ss_pred eEEEeChhHHHHHHHHHHHh------hccCCccccCchHHHHHHHHHhhhCCCeEEEecCch
Q 019615 175 HEFHFTVQEGIDALEEVIYH------IETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (338)
Q Consensus 175 ~~v~~~~~~~~~~l~~~~~~------~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~Gg 230 (338)
..+..+ + .+.+++.+.. ++.|.++... ....-.+.+.+++.|+.+++..--+
T Consensus 149 ~~v~~~--d-~~~l~~ai~~~t~~v~le~p~NptG~-~~~l~~i~~la~~~g~~livDe~~~ 206 (414)
T 3ndn_A 149 VFVDGD--D-LSQWERALSVPTQAVFFETPSNPMQS-LVDIAAVTELAHAAGAKVVLDNVFA 206 (414)
T ss_dssp EEECTT--C-HHHHHHHTSSCCSEEEEESSCTTTCC-CCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred EEeCCC--C-HHHHHHhcCCCCeEEEEECCCCCCCc-cccHHHHHHHHHHcCCEEEEECCCc
Confidence 776553 2 2334433221 2334332211 1223456677788888888876544
No 61
>3ndd_B Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 1ezx_B 3ndf_B 7api_B* 8api_B* 9api_B* 2d26_B
Probab=27.00 E-value=51 Score=18.75 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=14.0
Q ss_pred ceeeEEEEEEECCCCE-EEEEE
Q 019615 2 LDGMFSFVLLDTRDKS-FIAAR 22 (338)
Q Consensus 2 l~G~fa~~i~D~~~~~-l~l~r 22 (338)
.|-.|.|+|+|..++. |+++|
T Consensus 8 ~drPFlf~I~~~~t~~iLF~G~ 29 (36)
T 3ndd_B 8 FNKPFVFLMIEQNTKSPLFMGK 29 (36)
T ss_dssp CCSCEEEEEEETTTCCEEEEEE
T ss_pred eeCCEEEEEEECCCCcEEEEEE
Confidence 3557888999877654 45543
No 62
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics, seattle structural GE center for infectious disease, hydrolase; HET: 2FP; 2.35A {Bartonella henselae} SCOP: c.1.10.0
Probab=24.86 E-value=1.2e+02 Score=27.09 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHhhhcCCceEEEecCccc
Q 019615 91 DPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLD 122 (338)
Q Consensus 91 ~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlD 122 (338)
..+++.+.=-.++++.+...+|-.++||||.-
T Consensus 241 s~eevA~~Tv~~L~rtVP~avpGI~FLSGGqS 272 (347)
T 3mmt_A 241 SVEEVAEKTVHVLKQTVPAAVPGIAFLSGGQT 272 (347)
T ss_dssp CHHHHHHHHHHHHHHHSCTTSCEEEECCTTCC
T ss_pred CHHHHHHHHHHHHHhhCCcccCcceecCCCCC
Confidence 45677766667777888888888899999974
No 63
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=22.81 E-value=1.8e+02 Score=26.56 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVA 130 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~ 130 (338)
..++.+.+.+.+.+.+..+.. ++..|||..++.++++.
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~ 168 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLS 168 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHH
Confidence 345666777777777655444 78889988766554444
No 64
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=22.68 E-value=99 Score=24.90 Aligned_cols=67 Identities=24% Similarity=0.367 Sum_probs=38.4
Q ss_pred cceeeccCCCCchHHH---HHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeE
Q 019615 147 LHSFCIGLEGSPDLKA---AREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKM 223 (338)
Q Consensus 147 ~~~~t~~~~~~~e~~~---A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v 223 (338)
++..-+|- ..|.+. |.++.+.+|++++.--++.-. +|+ .++.+.+.+.+.|++|
T Consensus 24 ~V~IimGS--~SD~~v~~~a~~~L~~~gI~~e~~V~SAHR-------------tp~--------~l~~~~~~a~~~g~~V 80 (181)
T 4b4k_A 24 LVGVIMGS--TSDWETMKYACDILDELNIPYEKKVVSAHR-------------TPD--------YMFEYAETARERGLKV 80 (181)
T ss_dssp SEEEEESS--GGGHHHHHHHHHHHHHTTCCEEEEECCTTT-------------SHH--------HHHHHHHHTTTTTCCE
T ss_pred cEEEEECC--HhHHHHHHHHHHHHHHcCCCeeEEEEcccc-------------ChH--------HHHHHHHHHHhcCceE
Confidence 44444443 245544 456677889886554333211 111 1223345667789999
Q ss_pred EEecCchhhcccC
Q 019615 224 VISGEGSDEIFGG 236 (338)
Q Consensus 224 vltG~GgDelf~G 236 (338)
++.|-|+..-+.|
T Consensus 81 iIa~AG~aahLpG 93 (181)
T 4b4k_A 81 IIAGAGGAAHLPG 93 (181)
T ss_dssp EEEEECSSCCHHH
T ss_pred EEEeccccccchh
Confidence 9999998765444
No 65
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=22.14 E-value=43 Score=28.21 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASR 132 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~ 132 (338)
.+.+.+.+.+.++..+....+..+.||||--=..+...+.+
T Consensus 18 ~~~~A~~i~~~i~~~i~~~~~~~l~lsgGstp~~~y~~L~~ 58 (233)
T 3nwp_A 18 EQQLASKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSM 58 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHh
Confidence 34444445444555554557789999999654455444443
No 66
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=22.09 E-value=43 Score=28.15 Aligned_cols=40 Identities=20% Similarity=0.074 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHH
Q 019615 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVAS 131 (338)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~ 131 (338)
.+.+.+.+.+.++..+....+..+.||||--=..+...+.
T Consensus 15 ~~~~A~~i~~~i~~~i~~~~~~~l~lsgGstp~~~y~~L~ 54 (232)
T 3lhi_A 15 AQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALS 54 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHH
Confidence 3344444444445444445678999999964444444444
No 67
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=21.56 E-value=69 Score=26.76 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHH
Q 019615 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVAS 131 (338)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~ 131 (338)
+.+.+.+.+.++..+....+..+.||||--=..+...+.
T Consensus 15 ~~~A~~i~~~i~~~i~~~~~~~l~LsgGstp~~~y~~L~ 53 (226)
T 3lwd_A 15 ERLADTVAQALEADLAKRERALLVVSGGSTPKPFFTSLA 53 (226)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEEECCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHH
Confidence 344555555566666666788999999964444444444
No 68
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=20.68 E-value=57 Score=28.03 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHH
Q 019615 90 YDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVAS 131 (338)
Q Consensus 90 ~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~ 131 (338)
+..+.+.+.+.+.++..+....+..+.||||--=..+...+.
T Consensus 15 ~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgGstP~~ly~~L~ 56 (266)
T 3eb9_A 15 ELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLH 56 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCSEEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHH
Confidence 334555666666666666666788999999953334444443
No 69
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=20.64 E-value=1.1e+02 Score=24.37 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=17.7
Q ss_pred HHHHhhhCCCeEEEecCchhhcccC
Q 019615 212 MSRKIKSLGVKMVISGEGSDEIFGG 236 (338)
Q Consensus 212 l~~~a~~~g~~vvltG~GgDelf~G 236 (338)
+.+.+.+.|++|++.|-|+..-+.|
T Consensus 59 ~~~~a~~~g~~ViIa~AG~aahLpg 83 (173)
T 4grd_A 59 YAEKARERGLRAIIAGAGGAAHLPG 83 (173)
T ss_dssp HHHHHTTTTCSEEEEEEESSCCHHH
T ss_pred HHHHHHhcCCeEEEEeccccccchh
Confidence 3455667789999999888755444
No 70
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Probab=20.48 E-value=2.1e+02 Score=25.40 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHHhhhcCCceEEEecCccc
Q 019615 91 DPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLD 122 (338)
Q Consensus 91 ~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlD 122 (338)
..+++...=-.+.++.+...+|=.++||||.-
T Consensus 240 s~eeVA~~Tv~~L~rtVP~avpGI~FLSGGqS 271 (342)
T 3mbd_A 240 TPKKVATFTLRALLSTIPCGIPGIVFLSGGHG 271 (342)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCCEEEECCTTSC
T ss_pred CHHHHHHHHHHHHHhcCCcccCcceecCCCCC
Confidence 45677776667778888888888899999974
No 71
>1m93_C Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_B 1f0c_B
Probab=20.23 E-value=1.1e+02 Score=17.89 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=11.0
Q ss_pred eeeEEEEEEECCCCEEEEEE
Q 019615 3 DGMFSFVLLDTRDKSFIAAR 22 (338)
Q Consensus 3 ~G~fa~~i~D~~~~~l~l~r 22 (338)
|=.|.|+|+|....-|+++|
T Consensus 15 drPFlf~I~~~~~~iLF~G~ 34 (41)
T 1m93_C 15 DHPFIYVIRHVDGKILFVGR 34 (41)
T ss_dssp CSCEEEEEEETTSCEEEEEE
T ss_pred eCCEEEEEEECCCCEEEEEE
Confidence 44577777776522344443
Done!