BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019619
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
L KG W+ EED ++I+++ G WSDIA++ R GK CR RW N+L P++K+ +++
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 85 PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
+E+ +I H LGNRW++IA LPGRTDN +KN WNST+++
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 61 RCGKSCRLRWINYLRPDLKRGAFSPQEEELII-HLHSILGNRWSQIAARLPGRTDNEIKN 119
R C+ RW L P+L +G ++ +E++ +I H+ RWS IA L GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 120 FWNSTL 125
W++ L
Sbjct: 68 RWHNHL 73
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 103 bits (258), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
L KG W+ EED K+I+ + G W+ IA++ R GK CR RW N+L P++K+ +++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 85 PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
+E+ +I H +LGNRW++IA LPGRTDN +KN WNST+K+
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKR 106
Score = 33.1 bits (74), Expect = 0.24, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 76 PDLKRGAFSPQEEELIIHLHSILGNR-WSQIAARLPGRTDNEIKNFWNSTLKKILK 130
PDL +G ++ +E++ +I L G + W+ IA L GR + + W++ L +K
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVK 58
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 102 bits (253), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
+L KG W+ EED ++IK + G WS IA++ R GK CR RW N+L P++K+ ++
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 59
Query: 84 SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
+ +E+ +I H LGNRW++IA LPGRTDN IKN WNST+++
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 77 DLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130
+L +G ++ +E++ +I L G RWS IA L GR + + W++ L +K
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 55
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 101 bits (252), Expect = 5e-22, Method: Composition-based stats.
Identities = 49/103 (47%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
L KG W+ EED ++IK + G WS IA++ R GK CR RW N+L P++K+ +++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 85 PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
+E+ +I H LGNRW++IA LPGRTDN IKN WNST+++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 78 LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130
L +G ++ +E++ +I L G RWS IA L GR + + W++ L +K
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 55
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
L KG W+ EED ++IK + G WS IA++ R GK CR RW N+L P++K+ +++
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 85 PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
+E+ +I H LGNRW++IA LPGRTDN IKN WNST+++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 86
KG ++ EDD + +Y+ NG W I + R K CR RW N+L P + + A++P+
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 87 EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
E+E I + LG++WS IA +PGRTDN IKN WNS++ K
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISK 101
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 17 NINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRP 76
+N KA K +K ++PEED+ L + + +G W IA R + CR RW NYL P
Sbjct: 3 QVNLKAAKKQK--FTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAP 58
Query: 77 DLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128
+ ++ +E+ L++ G +W+ IA PGRTD IKN W + K+
Sbjct: 59 SISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 78 LKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
+K+ +++ +E+ +I H LGNRW++IA LPGRTDN IKN WNST+++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 50
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 39/51 (76%)
Query: 77 DLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
++K+ +++ +E+ ++ H LGNRW++IA LPGRTDN IKN WNST+++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 52
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 31 SPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEL 90
+ EED KL + ++ G W I++ + R + CR RW NY+ P L+ +SP+E+ L
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 91 IIHLHSILGNRWSQIAARLPGRTDNEIKNFW 121
+ ++ G +W++I+ L R+DN I+N W
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
L KG W+ EED +LIK + G WS IA++ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTL 125
L +G ++ +E++ +I L G RWS IA L GR + + W++ L
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
L KG W+ EED ++IK + G WS IA++ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTL 125
L +G ++ +E++ +I L G RWS IA L GR + + W++ L
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
L KG W+ EED ++I+ + G WS IA++ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTL 125
L +G ++ +E++ +I L G RWS IA L GR + + W++ L
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 29 LWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
+W ED+ L ++ G+ WS IA + ++ K C+ RW +L P +K+ +S
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
L K W+ EED+KL K + NG W IA N R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
L K W+ EED+KL K + NG W IA N R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 30 WSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCR 67
W +E+ LI T G G W+DIA G R + CR
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,556,864
Number of Sequences: 62578
Number of extensions: 371136
Number of successful extensions: 582
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 28
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)