Query 019619
Match_columns 338
No_of_seqs 211 out of 1425
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.4E-33 4.8E-38 230.7 8.6 104 24-128 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.6E-33 5.6E-38 231.8 8.2 105 27-132 1-105 (107)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 2.6E-33 8.8E-38 237.0 8.2 115 13-128 13-127 (128)
4 3zqc_A MYB3; transcription-DNA 100.0 5.1E-33 1.7E-37 236.5 9.7 110 27-137 2-111 (131)
5 3osg_A MYB21; transcription-DN 100.0 1.3E-32 4.4E-37 232.7 9.0 106 21-128 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 4.3E-31 1.5E-35 230.8 7.0 115 13-128 44-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.9E-30 1.7E-34 224.1 4.5 113 24-137 3-116 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.8 3.3E-21 1.1E-25 162.7 5.9 84 53-137 1-85 (128)
9 2dim_A Cell division cycle 5-l 99.8 8.9E-22 3E-26 150.4 1.5 66 22-88 4-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 1.2E-18 4E-23 161.4 6.0 106 22-128 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 5.6E-18 1.9E-22 131.2 5.0 59 67-126 10-68 (73)
12 2juh_A Telomere binding protei 99.7 6.2E-18 2.1E-22 142.6 3.1 86 18-104 8-103 (121)
13 2din_A Cell division cycle 5-l 99.7 7.6E-17 2.6E-21 121.6 7.1 60 73-133 2-61 (66)
14 2cu7_A KIAA1915 protein; nucle 99.7 1.2E-16 4.2E-21 122.6 8.0 59 74-132 3-61 (72)
15 2d9a_A B-MYB, MYB-related prot 99.7 2.5E-17 8.6E-22 122.0 2.8 57 22-79 3-59 (60)
16 2roh_A RTBP1, telomere binding 99.7 5.2E-17 1.8E-21 137.1 4.7 84 17-101 21-114 (122)
17 1gvd_A MYB proto-oncogene prot 99.6 3E-17 1E-21 118.3 2.0 52 25-77 1-52 (52)
18 1ity_A TRF1; helix-turn-helix, 99.6 4.7E-17 1.6E-21 123.9 2.5 65 20-84 3-68 (69)
19 2dim_A Cell division cycle 5-l 99.6 3.2E-16 1.1E-20 119.5 6.4 64 75-138 4-68 (70)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 5.3E-17 1.8E-21 116.8 1.5 52 25-77 1-52 (52)
21 2d9a_A B-MYB, MYB-related prot 99.6 4.9E-16 1.7E-20 115.0 5.2 55 75-129 3-58 (60)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 1.7E-15 5.9E-20 108.9 5.9 50 78-127 1-51 (52)
23 1gvd_A MYB proto-oncogene prot 99.6 3.6E-15 1.2E-19 107.3 5.9 50 78-127 1-51 (52)
24 1ity_A TRF1; helix-turn-helix, 99.6 6.5E-15 2.2E-19 112.0 7.1 59 74-132 4-65 (69)
25 3sjm_A Telomeric repeat-bindin 99.5 7.2E-16 2.5E-20 116.3 1.7 57 23-79 7-64 (64)
26 1x41_A Transcriptional adaptor 99.5 9.9E-16 3.4E-20 113.7 2.4 55 22-77 3-57 (60)
27 1w0t_A Telomeric repeat bindin 99.5 5.9E-15 2E-19 106.7 6.1 49 79-127 1-52 (53)
28 2yum_A ZZZ3 protein, zinc fing 99.5 6.5E-15 2.2E-19 113.5 6.3 59 75-133 3-67 (75)
29 1x41_A Transcriptional adaptor 99.5 8.7E-15 3E-19 108.6 6.0 53 75-127 3-56 (60)
30 2din_A Cell division cycle 5-l 99.5 1.1E-15 3.9E-20 115.2 -1.0 58 21-81 3-60 (66)
31 3sjm_A Telomeric repeat-bindin 99.5 2.2E-14 7.6E-19 108.1 6.0 52 78-129 9-63 (64)
32 2yum_A ZZZ3 protein, zinc fing 99.5 2.5E-15 8.7E-20 115.8 0.7 60 22-82 3-67 (75)
33 1w0t_A Telomeric repeat bindin 99.5 4.6E-15 1.6E-19 107.3 1.5 50 26-75 1-51 (53)
34 2elk_A SPCC24B10.08C protein; 99.5 5.5E-15 1.9E-19 109.1 1.6 51 24-74 6-56 (58)
35 2elk_A SPCC24B10.08C protein; 99.5 5.9E-14 2E-18 103.6 6.2 50 76-125 5-56 (58)
36 2ltp_A Nuclear receptor corepr 99.2 7E-15 2.4E-19 117.5 0.0 58 72-129 8-65 (89)
37 2cu7_A KIAA1915 protein; nucle 99.4 1.5E-14 5.1E-19 110.9 0.7 57 22-80 4-60 (72)
38 2llk_A Cyclin-D-binding MYB-li 99.4 5.5E-14 1.9E-18 108.8 2.5 64 13-80 9-72 (73)
39 3osg_A MYB21; transcription-DN 99.4 4.9E-13 1.7E-17 112.6 6.3 64 75-138 6-69 (126)
40 1gv2_A C-MYB, MYB proto-oncoge 99.4 4.8E-13 1.7E-17 108.7 5.9 61 77-137 1-62 (105)
41 2cqr_A RSGI RUH-043, DNAJ homo 99.4 5.8E-13 2E-17 103.0 6.0 52 76-127 14-69 (73)
42 2aje_A Telomere repeat-binding 99.4 1.7E-13 5.8E-18 112.9 3.0 80 20-99 6-94 (105)
43 3zqc_A MYB3; transcription-DNA 99.4 7E-14 2.4E-18 118.4 0.7 91 13-109 40-130 (131)
44 2yus_A SWI/SNF-related matrix- 99.3 4.9E-13 1.7E-17 104.8 2.6 52 20-73 11-62 (79)
45 2ckx_A NGTRF1, telomere bindin 99.3 7.7E-13 2.6E-17 104.7 3.6 69 28-97 1-79 (83)
46 2yus_A SWI/SNF-related matrix- 99.3 1.2E-12 4.1E-17 102.6 4.5 48 77-124 15-62 (79)
47 2k9n_A MYB24; R2R3 domain, DNA 99.3 2.2E-12 7.7E-17 105.5 5.4 58 80-137 1-59 (107)
48 1x58_A Hypothetical protein 49 99.3 3.9E-12 1.3E-16 95.3 6.2 50 78-127 6-58 (62)
49 2ckx_A NGTRF1, telomere bindin 99.3 7.3E-12 2.5E-16 99.1 6.4 49 81-129 1-54 (83)
50 2ltp_A Nuclear receptor corepr 98.9 9.4E-13 3.2E-17 105.2 0.0 55 20-76 9-63 (89)
51 2aje_A Telomere repeat-binding 99.2 1.5E-11 5.3E-16 101.2 7.1 54 75-128 8-66 (105)
52 2juh_A Telomere binding protei 99.2 1.2E-11 4.2E-16 104.2 6.3 55 74-128 11-70 (121)
53 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.3E-12 7.8E-17 99.7 1.1 54 21-75 12-68 (73)
54 2cjj_A Radialis; plant develop 99.2 3.3E-11 1.1E-15 97.2 6.6 51 79-129 7-61 (93)
55 1ign_A Protein (RAP1); RAP1,ye 99.2 1.6E-11 5.5E-16 113.8 5.1 56 76-131 4-65 (246)
56 2roh_A RTBP1, telomere binding 99.1 5.2E-11 1.8E-15 100.5 6.4 54 75-128 26-84 (122)
57 2eqr_A N-COR1, N-COR, nuclear 99.0 1.2E-09 4E-14 81.3 6.5 47 79-125 11-57 (61)
58 3hm5_A DNA methyltransferase 1 98.9 6E-10 2E-14 89.9 5.0 66 63-132 17-87 (93)
59 2cjj_A Radialis; plant develop 98.9 1.6E-10 5.6E-15 93.2 0.7 48 26-74 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 4.8E-09 1.7E-13 80.7 5.9 50 77-127 5-58 (72)
61 2iw5_B Protein corest, REST co 98.7 8E-09 2.7E-13 95.1 5.7 50 78-127 131-180 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.7 7.4E-09 2.5E-13 76.9 2.4 48 24-73 9-56 (61)
63 1wgx_A KIAA1903 protein; MYB D 98.6 4.1E-08 1.4E-12 75.9 5.9 49 80-128 8-60 (73)
64 1x58_A Hypothetical protein 49 98.6 8.8E-09 3E-13 77.1 0.9 49 25-75 6-57 (62)
65 2xag_B REST corepressor 1; ami 98.6 3E-08 1E-12 100.2 4.9 46 81-126 381-426 (482)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.5 2.2E-08 7.6E-13 77.0 0.7 51 24-76 5-58 (72)
67 1fex_A TRF2-interacting telome 98.3 7.9E-08 2.7E-12 71.2 0.4 48 27-75 2-58 (59)
68 1wgx_A KIAA1903 protein; MYB D 98.3 1.2E-07 4E-12 73.3 1.0 48 27-75 8-58 (73)
69 1fex_A TRF2-interacting telome 98.3 7.9E-07 2.7E-11 65.8 5.2 47 80-126 2-58 (59)
70 2yqk_A Arginine-glutamic acid 98.2 3E-06 1E-10 63.2 6.7 47 76-122 5-52 (63)
71 2iw5_B Protein corest, REST co 98.2 3.9E-07 1.3E-11 83.9 1.8 51 23-75 129-179 (235)
72 1ug2_A 2610100B20RIK gene prod 98.2 3.5E-06 1.2E-10 67.4 6.7 51 82-132 35-88 (95)
73 1ofc_X ISWI protein; nuclear p 98.1 6.3E-06 2.2E-10 79.1 7.4 102 28-130 111-278 (304)
74 4eef_G F-HB80.4, designed hema 98.0 1.3E-06 4.5E-11 67.4 1.4 43 80-122 20-66 (74)
75 2lr8_A CAsp8-associated protei 97.2 1.1E-06 3.8E-11 66.7 0.0 46 82-128 16-64 (70)
76 4iej_A DNA methyltransferase 1 97.9 2.4E-05 8.1E-10 63.0 7.0 53 81-133 31-88 (93)
77 4eef_G F-HB80.4, designed hema 97.9 1.8E-06 6.2E-11 66.6 -0.3 44 27-71 20-66 (74)
78 2crg_A Metastasis associated p 97.7 5.7E-05 2E-09 57.4 6.2 43 80-122 8-51 (70)
79 4a69_C Nuclear receptor corepr 97.7 4.8E-05 1.6E-09 61.1 5.8 44 80-123 43-86 (94)
80 2yqk_A Arginine-glutamic acid 97.6 1.9E-05 6.4E-10 58.9 2.3 48 22-71 4-52 (63)
81 2xag_B REST corepressor 1; ami 97.3 6.1E-05 2.1E-09 76.2 1.7 47 25-73 378-424 (482)
82 2ebi_A DNA binding protein GT- 97.3 0.00037 1.3E-08 54.3 5.7 53 80-132 4-70 (86)
83 1ug2_A 2610100B20RIK gene prod 97.1 0.00021 7.3E-09 57.1 2.5 59 14-73 20-80 (95)
84 4a69_C Nuclear receptor corepr 97.0 0.0002 6.8E-09 57.5 1.7 43 27-71 43-85 (94)
85 2crg_A Metastasis associated p 97.0 0.00027 9.2E-09 53.7 2.0 44 26-71 7-51 (70)
86 3hm5_A DNA methyltransferase 1 97.0 0.00028 9.5E-09 56.7 2.1 49 25-74 28-80 (93)
87 2ebi_A DNA binding protein GT- 96.8 8.6E-05 2.9E-09 58.0 -1.8 50 25-74 2-63 (86)
88 4b4c_A Chromodomain-helicase-D 96.8 0.0041 1.4E-07 55.5 8.7 105 23-128 3-197 (211)
89 2y9y_A Imitation switch protei 96.7 0.0035 1.2E-07 61.6 7.9 105 28-132 124-296 (374)
90 2lr8_A CAsp8-associated protei 95.7 0.0003 1E-08 53.4 0.0 52 22-75 9-62 (70)
91 1irz_A ARR10-B; helix-turn-hel 95.1 0.062 2.1E-06 40.2 6.6 50 78-127 5-59 (64)
92 1ofc_X ISWI protein; nuclear p 91.8 0.27 9.2E-06 47.0 6.5 49 80-128 110-159 (304)
93 4iej_A DNA methyltransferase 1 91.4 0.088 3E-06 42.2 2.2 48 25-73 28-79 (93)
94 4b4c_A Chromodomain-helicase-D 90.4 0.42 1.5E-05 42.2 6.0 51 78-128 5-60 (211)
95 2xb0_X Chromo domain-containin 89.2 0.22 7.4E-06 46.9 3.3 28 28-55 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 88.3 0.19 6.4E-06 37.6 1.7 48 23-70 3-53 (64)
97 2xb0_X Chromo domain-containin 78.4 4.1 0.00014 38.2 6.8 47 80-126 3-54 (270)
98 2y9y_A Imitation switch protei 68.2 4.4 0.00015 39.8 4.3 32 26-57 227-261 (374)
99 2rq5_A Protein jumonji; develo 59.6 2.2 7.6E-05 35.3 0.4 57 37-96 46-113 (121)
100 3cz6_A DNA-binding protein RAP 57.8 8 0.00027 33.8 3.6 30 23-55 110-147 (168)
101 2o8x_A Probable RNA polymerase 57.3 14 0.00049 25.6 4.4 45 83-129 16-60 (70)
102 2li6_A SWI/SNF chromatin-remod 49.7 3 0.0001 33.9 -0.4 39 37-76 53-98 (116)
103 1ku3_A Sigma factor SIGA; heli 47.7 25 0.00085 25.1 4.5 45 83-129 11-59 (73)
104 2li6_A SWI/SNF chromatin-remod 46.5 14 0.00048 29.8 3.2 39 90-128 53-99 (116)
105 1ig6_A MRF-2, modulator recogn 46.2 4.7 0.00016 32.1 0.3 41 36-76 36-87 (107)
106 2p7v_B Sigma-70, RNA polymeras 45.6 22 0.00076 25.0 3.9 43 87-130 9-55 (68)
107 3hug_A RNA polymerase sigma fa 43.8 31 0.0011 25.8 4.7 42 86-128 40-81 (92)
108 2lm1_A Lysine-specific demethy 43.8 35 0.0012 26.8 5.1 39 90-128 48-98 (107)
109 2jrz_A Histone demethylase jar 42.9 30 0.001 27.9 4.7 39 90-128 44-94 (117)
110 2jrz_A Histone demethylase jar 40.9 4.2 0.00014 33.1 -0.8 40 36-75 43-92 (117)
111 2k27_A Paired box protein PAX- 39.2 1.5E+02 0.0052 23.9 9.0 78 27-109 23-111 (159)
112 2eqy_A RBP2 like, jumonji, at 39.2 39 0.0013 27.5 4.8 39 90-128 46-96 (122)
113 2cxy_A BAF250B subunit, HBAF25 38.7 40 0.0014 27.4 4.8 41 90-130 55-107 (125)
114 1kkx_A Transcription regulator 37.9 21 0.00072 29.3 3.0 41 90-130 52-100 (123)
115 2eqy_A RBP2 like, jumonji, at 34.9 6.5 0.00022 32.2 -0.6 25 36-60 45-76 (122)
116 2rq5_A Protein jumonji; develo 34.8 38 0.0013 27.7 4.1 77 26-128 6-97 (121)
117 1or7_A Sigma-24, RNA polymeras 34.8 59 0.002 26.7 5.4 32 98-130 155-186 (194)
118 1c20_A DEAD ringer protein; DN 33.6 4.8 0.00016 33.2 -1.6 41 36-76 55-106 (128)
119 1c20_A DEAD ringer protein; DN 33.6 54 0.0018 26.7 4.9 40 89-128 55-107 (128)
120 2kk0_A AT-rich interactive dom 33.0 46 0.0016 27.9 4.4 41 90-130 68-121 (145)
121 1x3u_A Transcriptional regulat 32.0 74 0.0025 22.4 4.9 43 83-128 17-59 (79)
122 3ulq_B Transcriptional regulat 31.4 83 0.0028 23.8 5.3 46 80-128 27-72 (90)
123 2q1z_A RPOE, ECF SIGE; ECF sig 30.2 43 0.0015 27.3 3.8 32 98-130 150-181 (184)
124 2jxj_A Histone demethylase jar 29.6 28 0.00096 26.8 2.3 38 90-127 40-89 (96)
125 1tty_A Sigma-A, RNA polymerase 28.6 65 0.0022 23.8 4.2 41 88-129 23-67 (87)
126 1u78_A TC3 transposase, transp 27.8 2.1E+02 0.0071 22.0 7.8 89 27-120 4-99 (141)
127 3c57_A Two component transcrip 27.3 81 0.0028 23.8 4.6 46 82-130 27-72 (95)
128 3au4_B Netrin receptor DCC; pr 27.2 12 0.00041 27.5 -0.2 11 318-328 46-56 (63)
129 3i4p_A Transcriptional regulat 26.9 54 0.0019 27.1 3.8 45 86-131 3-48 (162)
130 3mzy_A RNA polymerase sigma-H 26.7 77 0.0026 24.9 4.6 30 98-128 123-152 (164)
131 1fse_A GERE; helix-turn-helix 26.6 1.3E+02 0.0043 20.7 5.3 45 81-128 10-54 (74)
132 1rp3_A RNA polymerase sigma fa 26.4 93 0.0032 26.2 5.4 38 90-128 194-231 (239)
133 1k78_A Paired box protein PAX5 26.4 1.2E+02 0.0043 24.0 5.9 78 27-109 30-118 (149)
134 1ig6_A MRF-2, modulator recogn 26.3 38 0.0013 26.7 2.6 39 90-128 37-88 (107)
135 1xsv_A Hypothetical UPF0122 pr 25.5 1.2E+02 0.004 23.9 5.4 41 87-128 29-69 (113)
136 2yqf_A Ankyrin-1; death domain 25.1 89 0.0031 24.6 4.6 34 84-118 14-47 (111)
137 1je8_A Nitrate/nitrite respons 24.7 99 0.0034 22.6 4.6 44 82-128 21-64 (82)
138 3cz6_A DNA-binding protein RAP 24.4 49 0.0017 28.8 3.1 17 76-92 110-126 (168)
139 2jpc_A SSRB; DNA binding prote 22.9 1.3E+02 0.0045 20.0 4.7 38 89-128 4-41 (61)
140 3i4p_A Transcriptional regulat 22.8 16 0.00055 30.5 -0.3 91 33-126 3-125 (162)
141 2kk0_A AT-rich interactive dom 22.4 20 0.00068 30.2 0.2 40 37-76 68-118 (145)
142 2of5_H Leucine-rich repeat and 20.5 89 0.003 25.0 3.8 29 88-117 13-41 (118)
143 2p1m_A SKP1-like protein 1A; F 20.5 37 0.0012 28.6 1.5 35 51-93 119-153 (160)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.4e-33 Score=230.70 Aligned_cols=104 Identities=47% Similarity=0.885 Sum_probs=99.6
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchH
Q 019619 24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWS 103 (338)
Q Consensus 24 ~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs 103 (338)
.+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999888999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 104 QIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 104 ~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
.||+.|||||+++||+||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999875
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.6e-33 Score=231.84 Aligned_cols=105 Identities=31% Similarity=0.571 Sum_probs=101.4
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHh
Q 019619 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIA 106 (338)
Q Consensus 27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA 106 (338)
||+||+|||++|+++|..||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|++++.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999888999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhHHHHhcC
Q 019619 107 ARLPGRTDNEIKNFWNSTLKKILKNN 132 (338)
Q Consensus 107 ~~lpgRT~~q~KnRW~~llrk~~k~~ 132 (338)
+.|||||+++||+||+.++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999999877654
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=2.6e-33 Score=237.05 Aligned_cols=115 Identities=42% Similarity=0.790 Sum_probs=103.2
Q ss_pred cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHH
Q 019619 13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELII 92 (338)
Q Consensus 13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLl 92 (338)
-..+|.+...|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+
T Consensus 13 C~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~ 91 (128)
T 1h8a_C 13 CQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIY 91 (128)
T ss_dssp ---------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHH
Confidence 4678999999999999999999999999999999888999999998 999999999999999999999999999999999
Q ss_pred HHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 93 HLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 93 elv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
+++.+||++|..||+.|||||+++||+||+.+++++
T Consensus 92 ~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 92 QAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998875
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=5.1e-33 Score=236.49 Aligned_cols=110 Identities=41% Similarity=0.718 Sum_probs=105.0
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHh
Q 019619 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIA 106 (338)
Q Consensus 27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA 106 (338)
||+||+|||++|+++|..||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhHHHHhcCCCCCC
Q 019619 107 ARLPGRTDNEIKNFWNSTLKKILKNNPNAPT 137 (338)
Q Consensus 107 ~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~ 137 (338)
+.|+|||+++||+||+.++++.+....+...
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 9999999999999999999998887755443
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.3e-32 Score=232.74 Aligned_cols=106 Identities=33% Similarity=0.642 Sum_probs=101.3
Q ss_pred cCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019619 21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN 100 (338)
Q Consensus 21 k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~ 100 (338)
..+..++|+||+|||++|+++|.+||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 357889999999999999999999997 7999999998 99999999999999999999999999999999999999999
Q ss_pred chHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 101 RWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 101 kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
+|..||+.|+|||+++||+||..++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998774
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=4.3e-31 Score=230.82 Aligned_cols=115 Identities=43% Similarity=0.775 Sum_probs=109.5
Q ss_pred cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHH
Q 019619 13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELII 92 (338)
Q Consensus 13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLl 92 (338)
...+|.+...|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+
T Consensus 44 cr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~ 122 (159)
T 1h89_C 44 CQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIY 122 (159)
T ss_dssp HHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHH
T ss_pred HHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHH
Confidence 4457888889999999999999999999999999878999999998 999999999999999999999999999999999
Q ss_pred HHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 93 HLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 93 elv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
+++.+||++|..||+.|||||+++||+||+.+++++
T Consensus 123 ~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 123 QAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.9e-30 Score=224.14 Aligned_cols=113 Identities=33% Similarity=0.611 Sum_probs=67.6
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 019619 24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN-RW 102 (338)
Q Consensus 24 ~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~-kW 102 (338)
.+++++||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 46799999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred HHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCC
Q 019619 103 SQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPT 137 (338)
Q Consensus 103 s~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~ 137 (338)
..||..|+|||+.||++||..++++.++..+|+..
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~e 116 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChH
Confidence 99999999999999999999999877766666543
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=3.3e-21 Score=162.71 Aligned_cols=84 Identities=26% Similarity=0.567 Sum_probs=58.1
Q ss_pred hhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHHHHhc
Q 019619 53 IARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKKILKN 131 (338)
Q Consensus 53 IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~ 131 (338)
||+.|+ +|++.||++||.++|+|.+++++||+|||++|++++.+||. +|..||..|+|||+.||++||..+|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788997 99999999999999999999999999999999999999995 7999999999999999999999999887777
Q ss_pred CCCCCC
Q 019619 132 NPNAPT 137 (338)
Q Consensus 132 ~~~s~~ 137 (338)
++|+..
T Consensus 80 ~~WT~e 85 (128)
T 1h8a_C 80 TSWTEE 85 (128)
T ss_dssp SCCCHH
T ss_pred ccCCHH
Confidence 766544
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.9e-22 Score=150.41 Aligned_cols=66 Identities=27% Similarity=0.619 Sum_probs=63.8
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHH
Q 019619 22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEE 88 (338)
Q Consensus 22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED 88 (338)
.+.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5789999999999999999999999888999999998 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.74 E-value=1.2e-18 Score=161.41 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=92.2
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCCCC-----chhhhhhcCCcccccccceeeeeeccCCCC-----------------
Q 019619 22 ANKLRKGLWSPEEDDKLIKYMLTNGQGC-----WSDIARNAGLQRCGKSCRLRWINYLRPDLK----------------- 79 (338)
Q Consensus 22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~-----W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lk----------------- 79 (338)
.+.+++++||+|||++|+++|.++|... |..||+.|+ |||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998643 999999998 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 019619 80 ------------RGAFSPQEEELIIHLHSI-L--------------------------------GN-------------- 100 (338)
Q Consensus 80 ------------kg~WT~EED~lLlelv~~-~--------------------------------G~-------------- 100 (338)
+..||.|||..|+..+++ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999877 2 11
Q ss_pred -----------chHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 101 -----------RWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 101 -----------kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
.|.+||+.+|+||.+++|+||+.+++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988765
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-18 Score=131.25 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=47.8
Q ss_pred ceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhH
Q 019619 67 RLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK 126 (338)
Q Consensus 67 r~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llr 126 (338)
--||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 9999999999986543
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=6.2e-18 Score=142.61 Aligned_cols=86 Identities=16% Similarity=0.318 Sum_probs=79.7
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhc----CCcccccccceeeeeecc-----CCCCCC-CCCHHH
Q 019619 18 INAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNA----GLQRCGKSCRLRWINYLR-----PDLKRG-AFSPQE 87 (338)
Q Consensus 18 ~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m----~~~Rt~~QCr~Rw~n~L~-----p~lkkg-~WT~EE 87 (338)
....++..++++||+|||+.|+++|.+||.++|+.|++.+ + +||..||++||.++|+ |.++++ +|++||
T Consensus 8 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~ 86 (121)
T 2juh_A 8 RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDL 86 (121)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHH
Confidence 3445788999999999999999999999998999999985 5 8999999999999998 999999 999999
Q ss_pred HHHHHHHHHHhCCchHH
Q 019619 88 EELIIHLHSILGNRWSQ 104 (338)
Q Consensus 88 D~lLlelv~~~G~kWs~ 104 (338)
+.+|++++..+|++|.+
T Consensus 87 ~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 87 LDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHccchhc
Confidence 99999999999999976
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.6e-17 Score=121.64 Aligned_cols=60 Identities=25% Similarity=0.428 Sum_probs=57.6
Q ss_pred eccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCC
Q 019619 73 YLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNP 133 (338)
Q Consensus 73 ~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~ 133 (338)
+|+|.+++++||+|||++|++++.+||.+|..||+ ++|||+.|||+||+.++++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988764
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=1.2e-16 Score=122.60 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=56.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHhcC
Q 019619 74 LRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNN 132 (338)
Q Consensus 74 L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~ 132 (338)
++|.+++++||+|||++|++++.+||.+|..||++|+|||+.|||+||+.++++..+.+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g 61 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999987764
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=2.5e-17 Score=121.96 Aligned_cols=57 Identities=26% Similarity=0.479 Sum_probs=54.2
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCC
Q 019619 22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLK 79 (338)
Q Consensus 22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lk 79 (338)
.|.+++++||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999878999999998 99999999999999999875
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.65 E-value=5.2e-17 Score=137.13 Aligned_cols=84 Identities=19% Similarity=0.303 Sum_probs=76.1
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhc----CCcccccccceeeeeec-----cCCCCCCCCCHHH
Q 019619 17 NINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNA----GLQRCGKSCRLRWINYL-----RPDLKRGAFSPQE 87 (338)
Q Consensus 17 ~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m----~~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EE 87 (338)
.........++++||+|||+.|+++|++||.++|+.|++.+ + +|+..||++||.+++ +|.++++.|+++|
T Consensus 21 ~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e 99 (122)
T 2roh_A 21 KRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQE 99 (122)
T ss_dssp CCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHH
T ss_pred CCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHH
Confidence 34445677889999999999999999999998999999864 5 899999999999999 8999999999999
Q ss_pred -HHHHHHHHHHhCCc
Q 019619 88 -EELIIHLHSILGNR 101 (338)
Q Consensus 88 -D~lLlelv~~~G~k 101 (338)
+.+|++++..||++
T Consensus 100 ~~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 100 LLDRVLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhH
Confidence 89999999999975
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=3e-17 Score=118.26 Aligned_cols=52 Identities=48% Similarity=0.853 Sum_probs=49.6
Q ss_pred CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCC
Q 019619 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77 (338)
Q Consensus 25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~ 77 (338)
+++|+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999878999999998 999999999999999984
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=4.7e-17 Score=123.90 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=59.8
Q ss_pred ccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCC-cccccccceeeeeeccCCCCCCCCC
Q 019619 20 AKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGL-QRCGKSCRLRWINYLRPDLKRGAFS 84 (338)
Q Consensus 20 ~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~-~Rt~~QCr~Rw~n~L~p~lkkg~WT 84 (338)
.+.+..++++||+|||++|+++|.+||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4578889999999999999999999998889999999965 8999999999999999999988764
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=119.45 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=60.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCCC
Q 019619 75 RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTP 138 (338)
Q Consensus 75 ~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~~ 138 (338)
.|.+++++||+|||++|+++|.+|| ++|..||..|++||+.|||+||..+|++.+++.+|+..+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 4678999999999999999999999 899999999999999999999999999999999887664
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=5.3e-17 Score=116.84 Aligned_cols=52 Identities=38% Similarity=0.683 Sum_probs=48.2
Q ss_pred CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCC
Q 019619 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77 (338)
Q Consensus 25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~ 77 (338)
+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999878999999998 999999999999999984
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=4.9e-16 Score=114.97 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=51.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619 75 RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129 (338)
Q Consensus 75 ~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk~~ 129 (338)
+|.+++++||+|||++|+++|.+|| ++|..||+.|++||+.|||+||+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999987654
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=1.7e-15 Score=108.87 Aligned_cols=50 Identities=30% Similarity=0.541 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619 78 LKRGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKK 127 (338)
Q Consensus 78 lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk 127 (338)
+++++||+|||++|++++.+||. +|..||+.|+|||+.||++||+.+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 999999999999999999999999864
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=3.6e-15 Score=107.29 Aligned_cols=50 Identities=32% Similarity=0.661 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619 78 LKRGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKK 127 (338)
Q Consensus 78 lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk 127 (338)
+++++||+|||++|++++.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 699999999999999999999998854
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.55 E-value=6.5e-15 Score=112.00 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=54.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCC--CCCHHHHHHHHHHHhHHHHhcC
Q 019619 74 LRPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLP--GRTDNEIKNFWNSTLKKILKNN 132 (338)
Q Consensus 74 L~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lp--gRT~~q~KnRW~~llrk~~k~~ 132 (338)
.++..++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||+.+|++.+.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 45678899999999999999999999 79999999999 9999999999999999876654
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=7.2e-16 Score=116.34 Aligned_cols=57 Identities=25% Similarity=0.448 Sum_probs=49.2
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC-CcccccccceeeeeeccCCCC
Q 019619 23 NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG-LQRCGKSCRLRWINYLRPDLK 79 (338)
Q Consensus 23 ~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~-~~Rt~~QCr~Rw~n~L~p~lk 79 (338)
...+|++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||.++++|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 445789999999999999999999989999999854 289999999999999988763
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=9.9e-16 Score=113.71 Aligned_cols=55 Identities=18% Similarity=0.508 Sum_probs=51.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCC
Q 019619 22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77 (338)
Q Consensus 22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~ 77 (338)
.+.+++++||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 4678999999999999999999999888999999998 999999999999999764
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=5.9e-15 Score=106.74 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchHHHhccCC--CCCHHHHHHHHHHHhHH
Q 019619 79 KRGAFSPQEEELIIHLHSILG-NRWSQIAARLP--GRTDNEIKNFWNSTLKK 127 (338)
Q Consensus 79 kkg~WT~EED~lLlelv~~~G-~kWs~IA~~lp--gRT~~q~KnRW~~llrk 127 (338)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999999875
No 28
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.5e-15 Score=113.54 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=54.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCC
Q 019619 75 RPDLKRGAFSPQEEELIIHLHSILG------NRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNP 133 (338)
Q Consensus 75 ~p~lkkg~WT~EED~lLlelv~~~G------~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~ 133 (338)
+|.+.+++||+|||++|++++.+|| ++|..||++|+|||+.|||+||+.+|++..+.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 7999999999999999999999999988776653
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=8.7e-15 Score=108.61 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=49.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619 75 RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKK 127 (338)
Q Consensus 75 ~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk 127 (338)
++.+.+++||+|||++|++++.+|| ++|..||+.|++||+.|||+||..++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 8999999999999999999999988753
No 30
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-15 Score=115.18 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=53.1
Q ss_pred cCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCC
Q 019619 21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRG 81 (338)
Q Consensus 21 k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg 81 (338)
..|.+++++||+|||++|+++|..+|. +|..||+ ++ +|+++||++||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 468999999999999999999999997 7999999 65 7999999999999999877654
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=2.2e-14 Score=108.15 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCC--CCCHHHHHHHHHHHhHHHH
Q 019619 78 LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLP--GRTDNEIKNFWNSTLKKIL 129 (338)
Q Consensus 78 lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lp--gRT~~q~KnRW~~llrk~~ 129 (338)
.++++||+|||++|+++|.+|| ++|..||+.++ +||+.|||+||++++|..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5788999999999999999999 69999999865 9999999999999988643
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-15 Score=115.83 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=55.7
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCC-----CCchhhhhhcCCcccccccceeeeeeccCCCCCCC
Q 019619 22 ANKLRKGLWSPEEDDKLIKYMLTNGQ-----GCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGA 82 (338)
Q Consensus 22 ~~~lkkg~WT~EEDe~L~~lV~~~G~-----~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~ 82 (338)
+|.+++++||+|||++|+++|..||. .+|..||+.|+ +|+.+||+.||.+||.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999999996 67999999998 99999999999999998877664
No 33
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.49 E-value=4.6e-15 Score=107.33 Aligned_cols=50 Identities=26% Similarity=0.445 Sum_probs=46.4
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCC-cccccccceeeeeecc
Q 019619 26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGL-QRCGKSCRLRWINYLR 75 (338)
Q Consensus 26 kkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~-~Rt~~QCr~Rw~n~L~ 75 (338)
++++||+|||++|+++|.+||.++|..||+.|+. +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998889999999965 6999999999999875
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=5.5e-15 Score=109.14 Aligned_cols=51 Identities=29% Similarity=0.460 Sum_probs=46.8
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeec
Q 019619 24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 74 (338)
Q Consensus 24 ~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L 74 (338)
.+.+++||+|||++|+++|.+||.++|..||+.|+.+|+++||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356889999999999999999998899999999976899999999999875
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=5.9e-14 Score=103.56 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCC-CCCHHHHHHHHHHHh
Q 019619 76 PDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLP-GRTDNEIKNFWNSTL 125 (338)
Q Consensus 76 p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lp-gRT~~q~KnRW~~ll 125 (338)
..+.+++||+|||++|++++.+|| ++|..||++|+ +||+.|||+||..++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346788999999999999999999 89999999999 999999999998764
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.17 E-value=7e-15 Score=117.53 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=54.1
Q ss_pred eeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619 72 NYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129 (338)
Q Consensus 72 n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~ 129 (338)
..++|.+++++||+|||++|++++.+||++|..||..|+|||+.|||+||+.++++..
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3568899999999999999999999999999999999999999999999999988753
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=1.5e-14 Score=110.94 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=53.2
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCC
Q 019619 22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKR 80 (338)
Q Consensus 22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkk 80 (338)
.|.+++++||+|||++|+++|..||. +|..||+.|+ +|+..||+.||.++|.+.++.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999997 6999999998 999999999999999876665
No 38
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=5.5e-14 Score=108.82 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=48.1
Q ss_pred cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCC
Q 019619 13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKR 80 (338)
Q Consensus 13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkk 80 (338)
++.++.+...|++++|+||+|||++|+++|.+||.. |+.||+.| +|++.||+.||.. |......
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 566889999999999999999999999999999976 99999999 6999999999974 5444443
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.37 E-value=4.9e-13 Score=112.58 Aligned_cols=64 Identities=23% Similarity=0.505 Sum_probs=57.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCCC
Q 019619 75 RPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTP 138 (338)
Q Consensus 75 ~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~~ 138 (338)
.+..++++||+|||++|++++.+||.+|..||+.|+|||+.||+.||..+|.+.+++++|+..+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE 69 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHH
Confidence 3568899999999999999999999999999999999999999999999998888887776544
No 40
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.37 E-value=4.8e-13 Score=108.71 Aligned_cols=61 Identities=28% Similarity=0.561 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCC
Q 019619 77 DLKRGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPT 137 (338)
Q Consensus 77 ~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~ 137 (338)
++++++||+|||++|+++|.+||. +|..||..|+|||+.||+.||..+|.+.++.++|+..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~e 62 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHH
Confidence 368999999999999999999996 7999999999999999999999999877666666543
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=5.8e-13 Score=103.04 Aligned_cols=52 Identities=10% Similarity=0.238 Sum_probs=47.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619 76 PDLKRGAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTLKK 127 (338)
Q Consensus 76 p~lkkg~WT~EED~lLlelv~~~G----~kWs~IA~~lpgRT~~q~KnRW~~llrk 127 (338)
+...+++||.|||++|++++.+|| .+|.+||++|||||+.|||+||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456788999999999999999999 7899999999999999999999988753
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.36 E-value=1.7e-13 Score=112.92 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=68.1
Q ss_pred ccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC---Ccccccccceeeeeec-----cCCCCCCCCCHHHHHH-
Q 019619 20 AKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG---LQRCGKSCRLRWINYL-----RPDLKRGAFSPQEEEL- 90 (338)
Q Consensus 20 ~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~---~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EED~l- 90 (338)
..+...++++||+|||++|+++|.+||.++|+.|++.+. .+||..+|++||.+++ +|.++++.=+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 446788999999999999999999999989999998652 3899999999999998 6999999888887765
Q ss_pred HHHHHHHhC
Q 019619 91 IIHLHSILG 99 (338)
Q Consensus 91 Llelv~~~G 99 (338)
+++++..+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 778877665
No 43
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.36 E-value=7e-14 Score=118.38 Aligned_cols=91 Identities=19% Similarity=0.298 Sum_probs=68.0
Q ss_pred cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHH
Q 019619 13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELII 92 (338)
Q Consensus 13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLl 92 (338)
...+|.+...|.+++|+||+|||++|+++|..||. .|..||+.|+ +|+..||+.||.++|++.+..++|+.+--
T Consensus 40 cr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~---- 113 (131)
T 3zqc_A 40 CRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL---- 113 (131)
T ss_dssp HHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----
T ss_pred HHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----
Confidence 45678899999999999999999999999999995 5999999998 99999999999999999999999876531
Q ss_pred HHHHHhCCchHHHhccC
Q 019619 93 HLHSILGNRWSQIAARL 109 (338)
Q Consensus 93 elv~~~G~kWs~IA~~l 109 (338)
........+|..|++.+
T Consensus 114 ~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 114 LPDRSKKRKAADVPKKL 130 (131)
T ss_dssp CCCCC------------
T ss_pred Cchhhhhhhhhhcchhc
Confidence 00122235677777654
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.31 E-value=4.9e-13 Score=104.81 Aligned_cols=52 Identities=15% Similarity=0.375 Sum_probs=48.2
Q ss_pred ccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619 20 AKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY 73 (338)
Q Consensus 20 ~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~ 73 (338)
.+.....+++||+|||++|+++|++|| .+|..||+.|+ +|+..||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 356677789999999999999999999 78999999998 99999999999998
No 45
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.31 E-value=7.7e-13 Score=104.72 Aligned_cols=69 Identities=20% Similarity=0.389 Sum_probs=59.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCchhhhhh----cCCcccccccceeeeeec-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 019619 28 GLWSPEEDDKLIKYMLTNGQGCWSDIARN----AGLQRCGKSCRLRWINYL-----RPDLKRG-AFSPQEEELIIHLHSI 97 (338)
Q Consensus 28 g~WT~EEDe~L~~lV~~~G~~~W~~IA~~----m~~~Rt~~QCr~Rw~n~L-----~p~lkkg-~WT~EED~lLlelv~~ 97 (338)
++||+|||++|+++|++||.++|+.|++. ++ +||..||++||.+++ +|.++++ +..++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999899999985 76 999999999999988 6766665 5667777888888754
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=102.57 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHH
Q 019619 77 DLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNST 124 (338)
Q Consensus 77 ~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~l 124 (338)
...+++||+|||++|++++.+||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999755
No 47
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.29 E-value=2.2e-12 Score=105.53 Aligned_cols=58 Identities=21% Similarity=0.456 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCC
Q 019619 80 RGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPT 137 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~ 137 (338)
+++||+|||++|+++|.+||. +|..||..|+|||+.||+.||..+|.+.++.++|+..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~e 59 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPE 59 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHH
Confidence 579999999999999999995 8999999999999999999999999887777776544
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.29 E-value=3.9e-12 Score=95.29 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHh---ccCCCCCHHHHHHHHHHHhHH
Q 019619 78 LKRGAFSPQEEELIIHLHSILGNRWSQIA---ARLPGRTDNEIKNFWNSTLKK 127 (338)
Q Consensus 78 lkkg~WT~EED~lLlelv~~~G~kWs~IA---~~lpgRT~~q~KnRW~~llrk 127 (338)
..+.+||+|||+.|+++|++||.+|.+|+ ..|++||..+||+||+.|.|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 35789999999999999999999999999 577999999999999999875
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.25 E-value=7.3e-12 Score=99.10 Aligned_cols=49 Identities=27% Similarity=0.480 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chHHHhcc----CCCCCHHHHHHHHHHHhHHHH
Q 019619 81 GAFSPQEEELIIHLHSILGN-RWSQIAAR----LPGRTDNEIKNFWNSTLKKIL 129 (338)
Q Consensus 81 g~WT~EED~lLlelv~~~G~-kWs~IA~~----lpgRT~~q~KnRW~~llrk~~ 129 (338)
.+||+|||++|+++|.+||. +|+.|++. |++||+.+||+||++++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999996 99999995 899999999999999998653
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.87 E-value=9.4e-13 Score=105.16 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=50.6
Q ss_pred ccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccC
Q 019619 20 AKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRP 76 (338)
Q Consensus 20 ~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p 76 (338)
...+.+++|+||+|||++|+++|..||. +|..||..|+ +||..||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 3468899999999999999999999997 6999999998 99999999999998864
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.22 E-value=1.5e-11 Score=101.24 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=48.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhccC----CCCCHHHHHHHHHHHhHHH
Q 019619 75 RPDLKRGAFSPQEEELIIHLHSILGN-RWSQIAARL----PGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 75 ~p~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~l----pgRT~~q~KnRW~~llrk~ 128 (338)
.+..++++||+|||++|+++|.+||. +|..|++.+ ++||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34578899999999999999999996 999999965 8999999999999999763
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.21 E-value=1.2e-11 Score=104.18 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=50.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhcc----CCCCCHHHHHHHHHHHhHHH
Q 019619 74 LRPDLKRGAFSPQEEELIIHLHSILGN-RWSQIAAR----LPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 74 L~p~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~----lpgRT~~q~KnRW~~llrk~ 128 (338)
+.+..++++||+|||++|+++|.+||. +|..|++. |++||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456788999999999999999999996 99999997 49999999999999999864
No 53
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.20 E-value=2.3e-12 Score=99.70 Aligned_cols=54 Identities=17% Similarity=0.396 Sum_probs=48.7
Q ss_pred cCCCCcccCCCHHHHHHHHHHHHHcCC---CCchhhhhhcCCcccccccceeeeeecc
Q 019619 21 KANKLRKGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNAGLQRCGKSCRLRWINYLR 75 (338)
Q Consensus 21 k~~~lkkg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~ 75 (338)
.++...+++||+|||++|+++|+.||. .+|..||+.|| +|+..||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 457788999999999999999999993 46999999998 9999999999998764
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.17 E-value=3.3e-11 Score=97.23 Aligned_cols=51 Identities=22% Similarity=0.465 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619 79 KRGAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129 (338)
Q Consensus 79 kkg~WT~EED~lLlelv~~~G----~kWs~IA~~lpgRT~~q~KnRW~~llrk~~ 129 (338)
.+++||.|||++|++++.+|| ++|.+||+.|||||+.+||+||+.+++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999999999996 789999999999999999999999987753
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.16 E-value=1.6e-11 Score=113.82 Aligned_cols=56 Identities=25% Similarity=0.466 Sum_probs=49.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hHHHhccCCCCCHHHHHHHHHHHhHHHHhc
Q 019619 76 PDLKRGAFSPQEEELIIHLHSILGNR------WSQIAARLPGRTDNEIKNFWNSTLKKILKN 131 (338)
Q Consensus 76 p~lkkg~WT~EED~lLlelv~~~G~k------Ws~IA~~lpgRT~~q~KnRW~~llrk~~k~ 131 (338)
+.+++++||+|||++|+++|.+||++ |..||++|+|||++|||+||+.+|++.+..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~ 65 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY 65 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhccc
Confidence 35778999999999999999999975 999999999999999999999999998763
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.13 E-value=5.2e-11 Score=100.48 Aligned_cols=54 Identities=26% Similarity=0.476 Sum_probs=48.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhcc----CCCCCHHHHHHHHHHHhHHH
Q 019619 75 RPDLKRGAFSPQEEELIIHLHSILGN-RWSQIAAR----LPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 75 ~p~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~----lpgRT~~q~KnRW~~llrk~ 128 (338)
....++++||+|||+.|+++|.+||. +|..|++. |++||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999996 99999996 48999999999999999764
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.2e-09 Score=81.27 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHh
Q 019619 79 KRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTL 125 (338)
Q Consensus 79 kkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~ll 125 (338)
..++||+||++++++++.+||.+|..||..|++||..+|+.+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997544
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.94 E-value=6e-10 Score=89.86 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=60.3
Q ss_pred ccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccC-----CCCCHHHHHHHHHHHhHHHHhcC
Q 019619 63 GKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARL-----PGRTDNEIKNFWNSTLKKILKNN 132 (338)
Q Consensus 63 ~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~l-----pgRT~~q~KnRW~~llrk~~k~~ 132 (338)
+.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+.++ ++||..+||+||..+.++.++..
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35578899999976 79999999999999999999999999999 58999999999999999988876
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.91 E-value=1.6e-10 Score=93.16 Aligned_cols=48 Identities=15% Similarity=0.337 Sum_probs=43.1
Q ss_pred cccCCCHHHHHHHHHHHHHcC---CCCchhhhhhcCCcccccccceeeeeec
Q 019619 26 RKGLWSPEEDDKLIKYMLTNG---QGCWSDIARNAGLQRCGKSCRLRWINYL 74 (338)
Q Consensus 26 kkg~WT~EEDe~L~~lV~~~G---~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L 74 (338)
.+++||+|||++|+++++.|+ ...|..||+.|| +||..||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 467999999999999999997 356999999998 999999999998764
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=4.8e-09 Score=80.75 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619 77 DLKRGAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTLKK 127 (338)
Q Consensus 77 ~lkkg~WT~EED~lLlelv~~~G----~kWs~IA~~lpgRT~~q~KnRW~~llrk 127 (338)
..+.+.||.||+++|.+++.+|+ .+|.+||.++ |||..+|++||+.|++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34577999999999999999997 6899999998 99999999999988654
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.74 E-value=8e-09 Score=95.12 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619 78 LKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127 (338)
Q Consensus 78 lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk 127 (338)
...++||+||++++++++.+||++|..||+.+++||..|||++|....++
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999987766
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=7.4e-09 Score=76.90 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=43.0
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619 24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY 73 (338)
Q Consensus 24 ~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~ 73 (338)
....++||+||++++.+++..|| .+|..||+.|+ +|+..||+.+|...
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 34668999999999999999999 57999999998 99999999988643
No 63
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.63 E-value=4.1e-08 Score=75.87 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 80 RGAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~G----~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
...||.+|+++|.+++..|+ .+|.+||..++|||..+|+.||..+++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 46899999999999999998 46999999999999999999999886543
No 64
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.58 E-value=8.8e-09 Score=77.12 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=43.7
Q ss_pred CcccCCCHHHHHHHHHHHHHcCCCCchhhh---hhcCCcccccccceeeeeecc
Q 019619 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIA---RNAGLQRCGKSCRLRWINYLR 75 (338)
Q Consensus 25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA---~~m~~~Rt~~QCr~Rw~n~L~ 75 (338)
..+.+||+|||+.|++.|++||. .|..|+ .++. +|+...+++||.+...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 46789999999999999999997 799999 4665 9999999999998664
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.57 E-value=3e-08 Score=100.18 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhH
Q 019619 81 GAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK 126 (338)
Q Consensus 81 g~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llr 126 (338)
..||+||..++++++.+||.+|..||+.++.||..|||++|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999975443
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=2.2e-08 Score=77.05 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCC---CCchhhhhhcCCcccccccceeeeeeccC
Q 019619 24 KLRKGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNAGLQRCGKSCRLRWINYLRP 76 (338)
Q Consensus 24 ~lkkg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p 76 (338)
..+++.||+|||++|.+++++|+. ..|..||+.+ +|+..||+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 455789999999999999999983 5699999998 49999999999876543
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.32 E-value=7.9e-08 Score=71.20 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=42.8
Q ss_pred ccCCCHHHHHHHHHHHHHc--------CCCCchhhhh-hcCCcccccccceeeeeecc
Q 019619 27 KGLWSPEEDDKLIKYMLTN--------GQGCWSDIAR-NAGLQRCGKSCRLRWINYLR 75 (338)
Q Consensus 27 kg~WT~EEDe~L~~lV~~~--------G~~~W~~IA~-~m~~~Rt~~QCr~Rw~n~L~ 75 (338)
+.+||+|||+.|+++|+++ |..-|..+|+ .++ .++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 4445999999 787 9999999999998774
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.31 E-value=1.2e-07 Score=73.27 Aligned_cols=48 Identities=25% Similarity=0.520 Sum_probs=43.0
Q ss_pred ccCCCHHHHHHHHHHHHHcCC---CCchhhhhhcCCcccccccceeeeeecc
Q 019619 27 KGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNAGLQRCGKSCRLRWINYLR 75 (338)
Q Consensus 27 kg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~ 75 (338)
...||.+|+++|.++++.|+. ++|..||+.|| +|+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 367999999999999999984 56999999998 9999999999987654
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.29 E-value=7.9e-07 Score=65.79 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hHHHhc-cCCCCCHHHHHHHHHHHhH
Q 019619 80 RGAFSPQEEELIIHLHSIL--------GNR-WSQIAA-RLPGRTDNEIKNFWNSTLK 126 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~--------G~k-Ws~IA~-~lpgRT~~q~KnRW~~llr 126 (338)
+.+||+|||.+|++.|.++ |+. |.++++ .++++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 7999999999999987663
No 70
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=3e-06 Score=63.23 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=43.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCchHHHhc-cCCCCCHHHHHHHHH
Q 019619 76 PDLKRGAFSPQEEELIIHLHSILGNRWSQIAA-RLPGRTDNEIKNFWN 122 (338)
Q Consensus 76 p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~-~lpgRT~~q~KnRW~ 122 (338)
|.++...||+||.++..+++.+||.+|..|++ .+++||..+|...|.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 66778899999999999999999999999999 589999999999885
No 71
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.18 E-value=3.9e-07 Score=83.94 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeecc
Q 019619 23 NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLR 75 (338)
Q Consensus 23 ~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~ 75 (338)
......+||+||++++++++.+|| .+|..||+.|+ +|+..||+.+|+++..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334568999999999999999999 56999999998 9999999999987653
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.17 E-value=3.5e-06 Score=67.37 Aligned_cols=51 Identities=14% Similarity=0.278 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---chHHHhccCCCCCHHHHHHHHHHHhHHHHhcC
Q 019619 82 AFSPQEEELIIHLHSILGN---RWSQIAARLPGRTDNEIKNFWNSTLKKILKNN 132 (338)
Q Consensus 82 ~WT~EED~lLlelv~~~G~---kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~ 132 (338)
-||.|||+.||..+++-|. .|..||+.|.+|+.+||++||+.|++-.-+..
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999985 89999999999999999999999998765544
No 73
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.05 E-value=6.3e-06 Score=79.08 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=80.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccce-------eee-----------------------------
Q 019619 28 GLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRL-------RWI----------------------------- 71 (338)
Q Consensus 28 g~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~-------Rw~----------------------------- 71 (338)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999997 888866542 220
Q ss_pred --------------eeccCCCCCCCCCHHHHHHHHHHHHHhC----CchHHHhc------------cCCCCCHHHHHHHH
Q 019619 72 --------------NYLRPDLKRGAFSPQEEELIIHLHSILG----NRWSQIAA------------RLPGRTDNEIKNFW 121 (338)
Q Consensus 72 --------------n~L~p~lkkg~WT~EED~lLlelv~~~G----~kWs~IA~------------~lpgRT~~q~KnRW 121 (338)
+...+..+...||++||..||-++.+|| +.|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0001223446899999999999999999 46999962 44789999999999
Q ss_pred HHHhHHHHh
Q 019619 122 NSTLKKILK 130 (338)
Q Consensus 122 ~~llrk~~k 130 (338)
..|++-..+
T Consensus 270 ~tLi~~iek 278 (304)
T 1ofc_X 270 NTLITLIER 278 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999875544
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.01 E-value=1.3e-06 Score=67.36 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chHHHhccCCCCCHHHHHHHHH
Q 019619 80 RGAFSPQEEELIIHLHSILGN----RWSQIAARLPGRTDNEIKNFWN 122 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~G~----kWs~IA~~lpgRT~~q~KnRW~ 122 (338)
..+||.||+++|.+++.+|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999884
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.19 E-value=1.1e-06 Score=66.75 Aligned_cols=46 Identities=15% Similarity=0.348 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHhCC---chHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 82 AFSPQEEELIIHLHSILGN---RWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 82 ~WT~EED~lLlelv~~~G~---kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
-||.|||+.||..+++-|. .|..||+.| +||++||++||..|++-.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 5999999999999999996 799999999 999999999999988643
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.90 E-value=2.4e-05 Score=62.96 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHhccCC-----CCCHHHHHHHHHHHhHHHHhcCC
Q 019619 81 GAFSPQEEELIIHLHSILGNRWSQIAARLP-----GRTDNEIKNFWNSTLKKILKNNP 133 (338)
Q Consensus 81 g~WT~EED~lLlelv~~~G~kWs~IA~~lp-----gRT~~q~KnRW~~llrk~~k~~~ 133 (338)
..||.||...|++|+.+|+-+|..|+.++. .||-.++|.||..+.++.++...
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 589999999999999999999999999873 79999999999999999888763
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.85 E-value=1.8e-06 Score=66.56 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=38.8
Q ss_pred ccCCCHHHHHHHHHHHHHcCC---CCchhhhhhcCCcccccccceeee
Q 019619 27 KGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNAGLQRCGKSCRLRWI 71 (338)
Q Consensus 27 kg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m~~~Rt~~QCr~Rw~ 71 (338)
...||.+|+++|.++++.|+. ..|.+||+.|| +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 568999999999999999974 37999999998 999999999885
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.72 E-value=5.7e-05 Score=57.44 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHhc-cCCCCCHHHHHHHHH
Q 019619 80 RGAFSPQEEELIIHLHSILGNRWSQIAA-RLPGRTDNEIKNFWN 122 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~G~kWs~IA~-~lpgRT~~q~KnRW~ 122 (338)
...||+||.++..+++.+||.+|..|++ .+++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999 589999999999886
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.70 E-value=4.8e-05 Score=61.11 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHH
Q 019619 80 RGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNS 123 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~ 123 (338)
...||+||.+++.+++..||.+|..||..|++||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998853
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=1.9e-05 Score=58.88 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=43.1
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhh-hcCCcccccccceeee
Q 019619 22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIAR-NAGLQRCGKSCRLRWI 71 (338)
Q Consensus 22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~-~m~~~Rt~~QCr~Rw~ 71 (338)
.|.+....||+||-+++.+++.+||. +|..|++ .|+ +|+..||..-|.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHh
Confidence 57888899999999999999999995 6999998 588 999999987664
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.30 E-value=6.1e-05 Score=76.21 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=42.4
Q ss_pred CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY 73 (338)
Q Consensus 25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~ 73 (338)
....+||.||-+++++++.+|| .+|..||+.|+ +|+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3568999999999999999999 57999999999 99999999987653
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.28 E-value=0.00037 Score=54.33 Aligned_cols=53 Identities=19% Similarity=0.400 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CchHHHhccC----CCCCHHHHHHHHHHHhHHHHhcC
Q 019619 80 RGAFSPQEEELIIHLHSILG----------NRWSQIAARL----PGRTDNEIKNFWNSTLKKILKNN 132 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~G----------~kWs~IA~~l----pgRT~~q~KnRW~~llrk~~k~~ 132 (338)
...||.+|-.+||++..++. ..|..||..| -.||+.||+.+|.+|.+...+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k 70 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK 70 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999997642 2599999986 37999999999999888765554
No 83
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.09 E-value=0.00021 Score=57.10 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=48.3
Q ss_pred CCCcccccCCCCcccCCCHHHHHHHHHHHHHcCC--CCchhhhhhcCCcccccccceeeeee
Q 019619 14 NGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQ--GCWSDIARNAGLQRCGKSCRLRWINY 73 (338)
Q Consensus 14 ~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~--~~W~~IA~~m~~~Rt~~QCr~Rw~n~ 73 (338)
.-.+...+++.-+--.||.|||..|+..+++.|. +-|..||+.++ +|++.|+++|++.+
T Consensus 20 ~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 20 CANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred eeccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3344445566666679999999999999999985 45999999998 99999999998753
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.01 E-value=0.0002 Score=57.47 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=39.3
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeee
Q 019619 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWI 71 (338)
Q Consensus 27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~ 71 (338)
...||+||.+++.+++..|| ++|..||+.++ +|+..+|.+-|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence 57899999999999999999 56999999998 999999988664
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.96 E-value=0.00027 Score=53.70 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=39.3
Q ss_pred cccCCCHHHHHHHHHHHHHcCCCCchhhhh-hcCCcccccccceeee
Q 019619 26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIAR-NAGLQRCGKSCRLRWI 71 (338)
Q Consensus 26 kkg~WT~EEDe~L~~lV~~~G~~~W~~IA~-~m~~~Rt~~QCr~Rw~ 71 (338)
....||+||-+++.+++..||. +|..|++ .|+ +|+..+|..-|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4568999999999999999995 6999999 588 999999988665
No 86
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.96 E-value=0.00028 Score=56.74 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=41.7
Q ss_pred CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC----Ccccccccceeeeeec
Q 019619 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG----LQRCGKSCRLRWINYL 74 (338)
Q Consensus 25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~----~~Rt~~QCr~Rw~n~L 74 (338)
++..+||.||++.|++++.+|+.. |..|+..+. .+|+.-++++||....
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 344899999999999999999965 999999983 2799999999987643
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.83 E-value=8.6e-05 Score=57.99 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=40.2
Q ss_pred CcccCCCHHHHHHHHHHHHHcCC---------CCchhhhhhc---CCcccccccceeeeeec
Q 019619 25 LRKGLWSPEEDDKLIKYMLTNGQ---------GCWSDIARNA---GLQRCGKSCRLRWINYL 74 (338)
Q Consensus 25 lkkg~WT~EEDe~L~~lV~~~G~---------~~W~~IA~~m---~~~Rt~~QCr~Rw~n~L 74 (338)
.+...||.+|-..|+++...... .-|..||..| |..|++.||+.+|.++.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999865321 1499999876 45799999999998754
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.80 E-value=0.0041 Score=55.45 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=68.3
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcC--CCCchhhhhh--cCCcccccccce-------eeee-------------------
Q 019619 23 NKLRKGLWSPEEDDKLIKYMLTNG--QGCWSDIARN--AGLQRCGKSCRL-------RWIN------------------- 72 (338)
Q Consensus 23 ~~lkkg~WT~EEDe~L~~lV~~~G--~~~W~~IA~~--m~~~Rt~~QCr~-------Rw~n------------------- 72 (338)
|+-....||..|-..|+.++.+|| .+.|..|++. +. +|+...++. ++..
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKV 81 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 344567899999999999999999 5679999864 33 444422211 0000
Q ss_pred -------------------------ec--------------------cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHh
Q 019619 73 -------------------------YL--------------------RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIA 106 (338)
Q Consensus 73 -------------------------~L--------------------~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA 106 (338)
.| .+......||++||..||..+.+|| ++|.+|-
T Consensus 82 ~~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir 161 (211)
T 4b4c_A 82 KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK 161 (211)
T ss_dssp -CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence 00 0011123599999999999999999 9999995
Q ss_pred c--cC------------CCCCHHHHHHHHHHHhHHH
Q 019619 107 A--RL------------PGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 107 ~--~l------------pgRT~~q~KnRW~~llrk~ 128 (338)
. .| ..+++..+..|...||+-.
T Consensus 162 ~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 162 MDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp HCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred hChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 4 21 1245678999987777643
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.69 E-value=0.0035 Score=61.60 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=78.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccce-------eee-----------------------------
Q 019619 28 GLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRL-------RWI----------------------------- 71 (338)
Q Consensus 28 g~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~-------Rw~----------------------------- 71 (338)
+.||.-+=..++.++.+||..+-..||..|+.+++...++. ||.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999889999999853566644431 111
Q ss_pred ------------ee---ccCC-CCCCCCCHHHHHHHHHHHHHhC----CchHHHhcc------------CCCCCHHHHHH
Q 019619 72 ------------NY---LRPD-LKRGAFSPQEEELIIHLHSILG----NRWSQIAAR------------LPGRTDNEIKN 119 (338)
Q Consensus 72 ------------n~---L~p~-lkkg~WT~EED~lLlelv~~~G----~kWs~IA~~------------lpgRT~~q~Kn 119 (338)
.+ +.+. -+...||++||..||-++.+|| +.|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 00 0111 1345799999999999999999 569998332 36799999999
Q ss_pred HHHHHhHHHHhcC
Q 019619 120 FWNSTLKKILKNN 132 (338)
Q Consensus 120 RW~~llrk~~k~~ 132 (338)
|...|++-..+..
T Consensus 284 Rc~tLi~~IeKE~ 296 (374)
T 2y9y_A 284 RGNTLLQCLEKEF 296 (374)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999998765543
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.66 E-value=0.0003 Score=53.42 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=43.6
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCC--CCchhhhhhcCCcccccccceeeeeecc
Q 019619 22 ANKLRKGLWSPEEDDKLIKYMLTNGQ--GCWSDIARNAGLQRCGKSCRLRWINYLR 75 (338)
Q Consensus 22 ~~~lkkg~WT~EEDe~L~~lV~~~G~--~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~ 75 (338)
+.+-.--.||.|||..|+..+++.|. .-|..||..+ +|++.|+..||...+.
T Consensus 9 ~~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 9 KKGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 44444568999999999999999986 3599999888 5999999999987654
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.08 E-value=0.062 Score=40.22 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---hHHHhccC--CCCCHHHHHHHHHHHhHH
Q 019619 78 LKRGAFSPQEEELIIHLHSILGNR---WSQIAARL--PGRTDNEIKNFWNSTLKK 127 (338)
Q Consensus 78 lkkg~WT~EED~lLlelv~~~G~k---Ws~IA~~l--pgRT~~q~KnRW~~llrk 127 (338)
..+-.||+|..++.++++.++|.. +..|-+.| +|.|..+|+.|.+.+-..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~ 59 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 345689999999999999999955 78998876 799999999987655433
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.83 E-value=0.27 Score=47.04 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 80 RGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
-+.||..|...++.++.+|| .+|..||..++|+|..+|+.++.....+.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 35799999999999999999 58999999999999999988777666554
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=91.36 E-value=0.088 Score=42.16 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=39.0
Q ss_pred CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC----Ccccccccceeeeee
Q 019619 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG----LQRCGKSCRLRWINY 73 (338)
Q Consensus 25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~----~~Rt~~QCr~Rw~n~ 73 (338)
++...||.||.+.|.+++.++.-. |-.|+.... ..|+.-+.++||...
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 445789999999999999999954 999998763 157777788887654
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.39 E-value=0.42 Score=42.24 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CchHHHhc--cCCCCCHHHHHHHHHHHhHHH
Q 019619 78 LKRGAFSPQEEELIIHLHSILG---NRWSQIAA--RLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 78 lkkg~WT~EED~lLlelv~~~G---~kWs~IA~--~lpgRT~~q~KnRW~~llrk~ 128 (338)
-....||+.|-..|+.++.+|| .+|..|+. .|.+||..+|+..+..++..-
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3456899999999999999999 68999986 478999999998777766553
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.22 E-value=0.22 Score=46.90 Aligned_cols=28 Identities=36% Similarity=0.769 Sum_probs=25.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCchhhhh
Q 019619 28 GLWSPEEDDKLIKYMLTNGQGCWSDIAR 55 (338)
Q Consensus 28 g~WT~EEDe~L~~lV~~~G~~~W~~IA~ 55 (338)
..|+.+||.+|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999964
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=88.30 E-value=0.19 Score=37.58 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=36.0
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCCC--CchhhhhhcCC-cccccccceee
Q 019619 23 NKLRKGLWSPEEDDKLIKYMLTNGQG--CWSDIARNAGL-QRCGKSCRLRW 70 (338)
Q Consensus 23 ~~lkkg~WT~EEDe~L~~lV~~~G~~--~W~~IA~~m~~-~Rt~~QCr~Rw 70 (338)
.+..+-.||+|..++++++|...|.. -++.|.+.|+. +.|..++..+.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL 53 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence 45677899999999999999999943 27889888762 45555555443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.39 E-value=4.1 Score=38.17 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CchHHHhc--cCCCCCHHHHHHHHHHHhH
Q 019619 80 RGAFSPQEEELIIHLHSILG---NRWSQIAA--RLPGRTDNEIKNFWNSTLK 126 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~G---~kWs~IA~--~lpgRT~~q~KnRW~~llr 126 (338)
+++||+-|-+.|+..+.+|| .+|..|+. .|+.|+...++.-|..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 68999977 5799999999988876654
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=68.16 E-value=4.4 Score=39.76 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=28.3
Q ss_pred cccCCCHHHHHHHHHHHHHcCC---CCchhhhhhc
Q 019619 26 RKGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNA 57 (338)
Q Consensus 26 kkg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m 57 (338)
++..||.+||..|+-++.+||. ++|..|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 5668999999999999999998 8999996654
No 99
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=59.56 E-value=2.2 Score=35.32 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=38.1
Q ss_pred HHHHHHHHcC-------CCCchhhhhhcCCcccc----cccceeeeeeccCCCCCCCCCHHHHHHHHHHHH
Q 019619 37 KLIKYMLTNG-------QGCWSDIARNAGLQRCG----KSCRLRWINYLRPDLKRGAFSPQEEELIIHLHS 96 (338)
Q Consensus 37 ~L~~lV~~~G-------~~~W~~IA~~m~~~Rt~----~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~ 96 (338)
+|..+|.+.| .+.|..||..|+...+. ...+..|.++|.|-- ..+++|-..|.+-+.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 3445555554 34599999999754433 345778888886632 378888888877654
No 100
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=57.77 E-value=8 Score=33.84 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=23.6
Q ss_pred CCCcccCCCHHHHHHHH--------HHHHHcCCCCchhhhh
Q 019619 23 NKLRKGLWSPEEDDKLI--------KYMLTNGQGCWSDIAR 55 (338)
Q Consensus 23 ~~lkkg~WT~EEDe~L~--------~lV~~~G~~~W~~IA~ 55 (338)
|.-..|.||+|+|+.|. +++++|| |..|..
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 56778999999999987 5788888 555543
No 101
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.28 E-value=14 Score=25.61 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619 83 FSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129 (338)
Q Consensus 83 WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~ 129 (338)
++ +.+..++.++-..|-.+.+||..+ |-+...|+.+....+++..
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 44 444556666667889999999999 8899999988776665544
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.70 E-value=3 Score=33.88 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHHHHHHcC-------CCCchhhhhhcCCcccccccceeeeeeccC
Q 019619 37 KLIKYMLTNG-------QGCWSDIARNAGLQRCGKSCRLRWINYLRP 76 (338)
Q Consensus 37 ~L~~lV~~~G-------~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p 76 (338)
+|..+|.+.| .+.|..||+.|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 5777787776 346999999998443 66777777777654
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=47.73 E-value=25 Score=25.11 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHH----hCCchHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619 83 FSPQEEELIIHLHSI----LGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129 (338)
Q Consensus 83 WT~EED~lLlelv~~----~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~ 129 (338)
.++.|-+ ++.+.-- .|..|..||..+ |-|...|+.+....+++..
T Consensus 11 L~~~er~-il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAM-VLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHH-HHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 4444444 4444443 578999999999 8999999998887776665
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.54 E-value=14 Score=29.81 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=30.4
Q ss_pred HHHHHHHHhC--------CchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 90 LIIHLHSILG--------NRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 90 lLlelv~~~G--------~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
.|..+|.++| +.|..|+..|.--.+..+|..|..+|-..
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4888888888 47999999873333889999998887653
No 105
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=46.18 E-value=4.7 Score=32.08 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHHHHHHHcC-------CCCchhhhhhcCCccc----ccccceeeeeeccC
Q 019619 36 DKLIKYMLTNG-------QGCWSDIARNAGLQRC----GKSCRLRWINYLRP 76 (338)
Q Consensus 36 e~L~~lV~~~G-------~~~W~~IA~~m~~~Rt----~~QCr~Rw~n~L~p 76 (338)
-+|..+|.+.| .+.|..||+.|+...+ +.+++..|.++|.|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777887776 2469999999974432 24566777777765
No 106
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.59 E-value=22 Score=25.00 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=31.7
Q ss_pred HHHHHHHHHH----HhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHh
Q 019619 87 EEELIIHLHS----ILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130 (338)
Q Consensus 87 ED~lLlelv~----~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k 130 (338)
.+..++.+.- ..|-.+.+||..+ |-|...|+.+....+++...
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 3444444444 3578999999999 89999999988877766543
No 107
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.78 E-value=31 Score=25.76 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 86 QEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 86 EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
+.++.++.+.-..|-.-..||..| |-+...|+.+....+++.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344456666666788899999999 889999998877665544
No 108
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=43.77 E-value=35 Score=26.83 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=29.0
Q ss_pred HHHHHHHHhC--------CchHHHhccCCCCC----HHHHHHHHHHHhHHH
Q 019619 90 LIIHLHSILG--------NRWSQIAARLPGRT----DNEIKNFWNSTLKKI 128 (338)
Q Consensus 90 lLlelv~~~G--------~kWs~IA~~lpgRT----~~q~KnRW~~llrk~ 128 (338)
.|..+|.++| +.|..|+..|.--. ..++|..|..+|...
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4777777887 47999999883222 468899998887654
No 109
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=42.88 E-value=30 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=29.2
Q ss_pred HHHHHHHHhC--------CchHHHhccCCCCC----HHHHHHHHHHHhHHH
Q 019619 90 LIIHLHSILG--------NRWSQIAARLPGRT----DNEIKNFWNSTLKKI 128 (338)
Q Consensus 90 lLlelv~~~G--------~kWs~IA~~lpgRT----~~q~KnRW~~llrk~ 128 (338)
+|..+|.++| +.|.+|+..|.--. ...+|..|..+|...
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5778888888 47999999882222 568899998877654
No 110
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=40.90 E-value=4.2 Score=33.08 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=26.1
Q ss_pred HHHHHHHHHcC-------CCCchhhhhhcCCccc---ccccceeeeeecc
Q 019619 36 DKLIKYMLTNG-------QGCWSDIARNAGLQRC---GKSCRLRWINYLR 75 (338)
Q Consensus 36 e~L~~lV~~~G-------~~~W~~IA~~m~~~Rt---~~QCr~Rw~n~L~ 75 (338)
-+|..+|.+.| .+.|..||+.|+...+ +.+.+..|.++|.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 46778888777 3469999999984432 2334555655554
No 111
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=39.21 E-value=1.5e+02 Score=23.91 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=47.4
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee------ccCCCC----CCCCCHHHHHHHHHHHH
Q 019619 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY------LRPDLK----RGAFSPQEEELIIHLHS 96 (338)
Q Consensus 27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~------L~p~lk----kg~WT~EED~lLlelv~ 96 (338)
..+.|.++-..++.++. .| .....||+.++ .+...++ ||.+. +.+... ....++++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34789999888888884 45 35789999987 4443333 34332 222211 23478888888888886
Q ss_pred HhC-CchHHHhccC
Q 019619 97 ILG-NRWSQIAARL 109 (338)
Q Consensus 97 ~~G-~kWs~IA~~l 109 (338)
+.. -.-.+|+..+
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 643 2234555544
No 112
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.16 E-value=39 Score=27.47 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=29.2
Q ss_pred HHHHHHHHhC--------CchHHHhccCCCC--C--HHHHHHHHHHHhHHH
Q 019619 90 LIIHLHSILG--------NRWSQIAARLPGR--T--DNEIKNFWNSTLKKI 128 (338)
Q Consensus 90 lLlelv~~~G--------~kWs~IA~~lpgR--T--~~q~KnRW~~llrk~ 128 (338)
+|..+|.++| +.|.+|+..|.-- + ...+|..|..+|...
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4777888887 4799999988221 2 468899999888764
No 113
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=38.75 E-value=40 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=30.3
Q ss_pred HHHHHHHHhC--------CchHHHhccCCC-CC---HHHHHHHHHHHhHHHHh
Q 019619 90 LIIHLHSILG--------NRWSQIAARLPG-RT---DNEIKNFWNSTLKKILK 130 (338)
Q Consensus 90 lLlelv~~~G--------~kWs~IA~~lpg-RT---~~q~KnRW~~llrk~~k 130 (338)
+|..+|.++| +.|.+|+..|.- .+ ...+|..|..+|...-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4778888887 479999998822 22 46889999988876533
No 114
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=37.86 E-value=21 Score=29.29 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHHHHHHhCC--------chHHHhccCCCCCHHHHHHHHHHHhHHHHh
Q 019619 90 LIIHLHSILGN--------RWSQIAARLPGRTDNEIKNFWNSTLKKILK 130 (338)
Q Consensus 90 lLlelv~~~G~--------kWs~IA~~lpgRT~~q~KnRW~~llrk~~k 130 (338)
+|..+|.+.|+ .|.+|+..|.--.+..+|..|..+|-..-.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 47778888873 699999987333389999999999887655
No 115
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.95 E-value=6.5 Score=32.23 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=18.6
Q ss_pred HHHHHHHHHcC-------CCCchhhhhhcCCc
Q 019619 36 DKLIKYMLTNG-------QGCWSDIARNAGLQ 60 (338)
Q Consensus 36 e~L~~lV~~~G-------~~~W~~IA~~m~~~ 60 (338)
-+|..+|.+.| .+.|..||+.|+..
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~ 76 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFA 76 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCC
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCC
Confidence 45777787776 34699999999843
No 116
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=34.82 E-value=38 Score=27.74 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=49.6
Q ss_pred cccCCCHHHH--HHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhC----
Q 019619 26 RKGLWSPEED--DKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILG---- 99 (338)
Q Consensus 26 kkg~WT~EED--e~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G---- 99 (338)
=+.+|.+.+. +.|.+.+...|.- ...++ .++ +|.-. --+|..+|.++|
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P-~i~-gk~lD-----------------------L~~Ly~~V~~~GG~~~ 59 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGIT-MDELP-LIG-GCELD-----------------------LACFFRLINEMGGMQQ 59 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCC-CSSCC-EET-TEECC-----------------------HHHHHHHHHHTTSHHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCCC-CCCCC-cCC-CEecc-----------------------HHHHHHHHHHcCcHHH
Confidence 3567888776 4566777777743 44443 233 23221 124788888888
Q ss_pred ----CchHHHhccC--CCC---CHHHHHHHHHHHhHHH
Q 019619 100 ----NRWSQIAARL--PGR---TDNEIKNFWNSTLKKI 128 (338)
Q Consensus 100 ----~kWs~IA~~l--pgR---T~~q~KnRW~~llrk~ 128 (338)
+.|.+|+..| +.- ....+|..|..+|-..
T Consensus 60 Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 60 VTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 4799999988 322 2468899998877654
No 117
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.77 E-value=59 Score=26.66 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=25.3
Q ss_pred hCCchHHHhccCCCCCHHHHHHHHHHHhHHHHh
Q 019619 98 LGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130 (338)
Q Consensus 98 ~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k 130 (338)
.|-....||..+ |-+...|+++....+++..+
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 467899999999 88999999988766655433
No 118
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.65 E-value=4.8 Score=33.18 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=26.7
Q ss_pred HHHHHHHHHcC-------CCCchhhhhhcCCccc----ccccceeeeeeccC
Q 019619 36 DKLIKYMLTNG-------QGCWSDIARNAGLQRC----GKSCRLRWINYLRP 76 (338)
Q Consensus 36 e~L~~lV~~~G-------~~~W~~IA~~m~~~Rt----~~QCr~Rw~n~L~p 76 (338)
-+|..+|.+.| ...|..||+.|+...+ +.+++..|.++|.|
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 45777777776 2359999999985443 23456666666654
No 119
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.59 E-value=54 Score=26.70 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHhC--------CchHHHhccC--CCC---CHHHHHHHHHHHhHHH
Q 019619 89 ELIIHLHSILG--------NRWSQIAARL--PGR---TDNEIKNFWNSTLKKI 128 (338)
Q Consensus 89 ~lLlelv~~~G--------~kWs~IA~~l--pgR---T~~q~KnRW~~llrk~ 128 (338)
-+|..+|.++| +.|..|+..| +.. ....+|..|..+|...
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 35778888888 4799999988 332 2578999999888764
No 120
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=32.99 E-value=46 Score=27.86 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=30.7
Q ss_pred HHHHHHHHhC--------CchHHHhccC--CCC---CHHHHHHHHHHHhHHHHh
Q 019619 90 LIIHLHSILG--------NRWSQIAARL--PGR---TDNEIKNFWNSTLKKILK 130 (338)
Q Consensus 90 lLlelv~~~G--------~kWs~IA~~l--pgR---T~~q~KnRW~~llrk~~k 130 (338)
+|..+|.++| +.|.+|+..| +.. ....+|..|..+|...-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 4778888888 4799999988 332 257899999988876533
No 121
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.97 E-value=74 Score=22.45 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 83 FSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 83 WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
+|+.|-+.| .++ ..|-.-.+||..+ |-+...|+.+....+++.
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455555444 444 6788899999999 889999999887766554
No 122
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.36 E-value=83 Score=23.75 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 80 RGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 80 kg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
....|+.|-+.|.-++ .|..-.+||..| +-+...|+.+...++++.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3468888877666555 788999999999 889999999988877664
No 123
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.22 E-value=43 Score=27.34 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=25.6
Q ss_pred hCCchHHHhccCCCCCHHHHHHHHHHHhHHHHh
Q 019619 98 LGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130 (338)
Q Consensus 98 ~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k 130 (338)
.|-....||..+ |-+...|+++....+++..+
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 467789999999 88999999998777665543
No 124
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=29.59 E-value=28 Score=26.81 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=27.1
Q ss_pred HHHHHHHHhC--------CchHHHhccCC--C--CCHHHHHHHHHHHhHH
Q 019619 90 LIIHLHSILG--------NRWSQIAARLP--G--RTDNEIKNFWNSTLKK 127 (338)
Q Consensus 90 lLlelv~~~G--------~kWs~IA~~lp--g--RT~~q~KnRW~~llrk 127 (338)
.|..+|.+.| +.|.+|+..|. . -...++|..|..+|..
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4777777777 57999999872 2 1256888888776654
No 125
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.61 E-value=65 Score=23.78 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHHHHHHHH----hCCchHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619 88 EELIIHLHSI----LGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129 (338)
Q Consensus 88 D~lLlelv~~----~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~ 129 (338)
++.++.+.-- .|-.+..||..+ |-|...|+.+-...+++..
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3444444443 578899999999 8999999998777666553
No 126
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=27.81 E-value=2.1e+02 Score=22.01 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=52.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccC------CCCCCCCCHHHHHHHHHHHHHhCC
Q 019619 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRP------DLKRGAFSPQEEELIIHLHSILGN 100 (338)
Q Consensus 27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p------~lkkg~WT~EED~lLlelv~~~G~ 100 (338)
....|.++-..++.++ ..| ..-..||+.++ .+...++ ||...... .-.....+++++..|+++...-+-
T Consensus 4 ~~~~s~~~r~~i~~~~-~~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~ 78 (141)
T 1u78_A 4 GSALSDTERAQLDVMK-LLN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCK 78 (141)
T ss_dssp SCCCCHHHHHHHHHHH-HTT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCC
T ss_pred cccCCHHHHHHHHHHH-HcC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 3567888888888776 445 34789999987 4444443 33322211 112235788888888877332223
Q ss_pred chHHHhccCCC-CCHHHHHHH
Q 019619 101 RWSQIAARLPG-RTDNEIKNF 120 (338)
Q Consensus 101 kWs~IA~~lpg-RT~~q~KnR 120 (338)
.-.+|+..|.- -+...|...
T Consensus 79 s~~~i~~~lg~~~s~~tV~r~ 99 (141)
T 1u78_A 79 TARDIRNELQLSASKRTILNV 99 (141)
T ss_dssp CHHHHHHHTTCCSCHHHHHHH
T ss_pred CHHHHHHHHCCCccHHHHHHH
Confidence 44788888721 466656543
No 127
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.26 E-value=81 Score=23.75 Aligned_cols=46 Identities=26% Similarity=0.237 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHh
Q 019619 82 AFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130 (338)
Q Consensus 82 ~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k 130 (338)
..|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+...++++...
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 467777666555 4 7788899999999 88999999988877766543
No 128
>3au4_B Netrin receptor DCC; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3pzd_B
Probab=27.17 E-value=12 Score=27.48 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=8.6
Q ss_pred cchhhhhccCC
Q 019619 318 WDLEGFMDNIS 328 (338)
Q Consensus 318 wd~~~~~~~~~ 328 (338)
=.||+||||+.
T Consensus 46 AnLEGLMkdLn 56 (63)
T 3au4_B 46 ASLEGLMKQLN 56 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46899999864
No 129
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.90 E-value=54 Score=27.14 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHHHHhc
Q 019619 86 QEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKILKN 131 (338)
Q Consensus 86 EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~ 131 (338)
+-|..|+++..+-| -.|..||+.+ |=|...|+.|++.+.+...-.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 55778888887776 5799999999 999999999998888765543
No 130
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.70 E-value=77 Score=24.87 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=23.6
Q ss_pred hCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 98 LGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 98 ~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
.|-....||+.+ |-|...|+.+....+++.
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 467889999999 889999988877655443
No 131
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=26.60 E-value=1.3e+02 Score=20.72 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 81 GAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 81 g~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
..+|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+...+.++.
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4577777766655 4 6678899999999 889999998887766554
No 132
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.42 E-value=93 Score=26.16 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 90 LIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 90 lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
.++.+.-..|-....||+.+ |-|...|+.+....+++.
T Consensus 194 ~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 194 LVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp HHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 33444444578899999999 889999988876655544
No 133
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.40 E-value=1.2e+02 Score=24.03 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=47.9
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee------ccCCCC----CCCCCHHHHHHHHHHHH
Q 019619 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY------LRPDLK----RGAFSPQEEELIIHLHS 96 (338)
Q Consensus 27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~------L~p~lk----kg~WT~EED~lLlelv~ 96 (338)
..+.|.++-..++.++. .| .....||+.++ .+...++ ||... +.+... ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV~-rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 35799999988888884 55 45789999987 4443333 34322 222222 23478888888888887
Q ss_pred HhC-CchHHHhccC
Q 019619 97 ILG-NRWSQIAARL 109 (338)
Q Consensus 97 ~~G-~kWs~IA~~l 109 (338)
+.+ -.-.+|+..+
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 643 2234555544
No 134
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=26.31 E-value=38 Score=26.66 Aligned_cols=39 Identities=13% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHHHHHHHhC--------CchHHHhccCC--CC---CHHHHHHHHHHHhHHH
Q 019619 90 LIIHLHSILG--------NRWSQIAARLP--GR---TDNEIKNFWNSTLKKI 128 (338)
Q Consensus 90 lLlelv~~~G--------~kWs~IA~~lp--gR---T~~q~KnRW~~llrk~ 128 (338)
.|..+|.++| +.|.+|+..|. .. ....+|..|..+|...
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4777788887 57999999872 21 2468999998877643
No 135
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.54 E-value=1.2e+02 Score=23.87 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 87 EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 87 ED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
.+..++.++-..|-....||..+ |-+...|+.+....+++.
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34455666666788999999999 889999988876555443
No 136
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=25.06 E-value=89 Score=24.56 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHH
Q 019619 84 SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIK 118 (338)
Q Consensus 84 T~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~K 118 (338)
++.-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 66667788888899999999999999 66665553
No 137
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.70 E-value=99 Score=22.58 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 82 AFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 82 ~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
..|+.|-+.|.. + ..|..-.+||+.+ |-+...|+.+...++++.
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467777665555 4 6788999999999 889999999887766554
No 138
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=24.41 E-value=49 Score=28.84 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.3
Q ss_pred CCCCCCCCCHHHHHHHH
Q 019619 76 PDLKRGAFSPQEEELII 92 (338)
Q Consensus 76 p~lkkg~WT~EED~lLl 92 (338)
|....|-||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999999876
No 139
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.86 E-value=1.3e+02 Score=19.97 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619 89 ELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128 (338)
Q Consensus 89 ~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~ 128 (338)
..++.+ -..|-.-.+||..+ |-+...|+.+...++++.
T Consensus 4 ~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 4 RQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 345555 35688889999999 889999999888777654
No 140
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.78 E-value=16 Score=30.46 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee------------ccCCCCCC-----------CCCHHHHH
Q 019619 33 EEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY------------LRPDLKRG-----------AFSPQEEE 89 (338)
Q Consensus 33 EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~------------L~p~lkkg-----------~WT~EED~ 89 (338)
+-|.+|++++++.+...|.+||+.++ -+...|+.|+.+. ++|..-.. +=..+.-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~~~~~~~ 80 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLK 80 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCCChHHHH
Confidence 45889999999999889999999997 6666666655543 33321110 11223344
Q ss_pred HHHHHHHHhC---------CchHHHhccCCCCCHHHHHHHHHHHhH
Q 019619 90 LIIHLHSILG---------NRWSQIAARLPGRTDNEIKNFWNSTLK 126 (338)
Q Consensus 90 lLlelv~~~G---------~kWs~IA~~lpgRT~~q~KnRW~~llr 126 (338)
.+.+.+..+. +.|.-+.... .|+..++......+++
T Consensus 81 ~~~~~l~~~peV~~~~~vtG~~D~~l~v~-~~d~~~l~~~l~~~l~ 125 (162)
T 3i4p_A 81 RFSEVVSEFPEVVEFYRMSGDVDYLLRVV-VPDIAAYDAFYKRMIA 125 (162)
T ss_dssp HHHHHHHHCTTEEEEEECCSSCSEEEEEE-ESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEeeecCCCCCEEEEEE-ECCHHHHHHHHHHHhh
Confidence 5566665543 4566666554 4777776654444443
No 141
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=22.42 E-value=20 Score=30.18 Aligned_cols=40 Identities=23% Similarity=0.510 Sum_probs=26.3
Q ss_pred HHHHHHHHcC-------CCCchhhhhhcCCccc----ccccceeeeeeccC
Q 019619 37 KLIKYMLTNG-------QGCWSDIARNAGLQRC----GKSCRLRWINYLRP 76 (338)
Q Consensus 37 ~L~~lV~~~G-------~~~W~~IA~~m~~~Rt----~~QCr~Rw~n~L~p 76 (338)
+|..+|.+.| ...|..||+.|+...+ +.+++..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4666666665 2359999999985432 23456677777765
No 142
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.48 E-value=89 Score=24.98 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCchHHHhccCCCCCHHHH
Q 019619 88 EELIIHLHSILGNRWSQIAARLPGRTDNEI 117 (338)
Q Consensus 88 D~lLlelv~~~G~kWs~IA~~lpgRT~~q~ 117 (338)
+..|..+....|..|..+|+.| |=+..+|
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I 41 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREV 41 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 3567788899999999999998 6556555
No 143
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=20.45 E-value=37 Score=28.62 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=26.8
Q ss_pred hhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHH
Q 019619 51 SDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIH 93 (338)
Q Consensus 51 ~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLle 93 (338)
..||..+. |+++.+||..+. +. ..+|+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 57888887 999999998552 32 3699999987654
Done!