Query 019620
Match_columns 338
No_of_seqs 147 out of 1655
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 04:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.5E-56 8.5E-61 400.3 19.9 287 6-334 3-296 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.9E-55 6.6E-60 393.6 25.4 288 3-324 6-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 8.4E-35 2.9E-39 259.8 18.3 195 109-325 5-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 6.4E-35 2.2E-39 261.2 12.1 188 3-223 103-291 (303)
5 3tgu_G UQCRQ, mitochondrial ub 29.6 36 0.0012 22.9 2.5 37 291-327 33-69 (81)
6 1pp9_G Ubiquinol-cytochrome C 23.7 64 0.0022 21.6 2.9 38 290-327 32-69 (81)
7 3arc_X Photosystem II PSBX pro 21.5 1.1E+02 0.0037 17.3 3.0 21 1-21 2-22 (39)
8 3f2e_A SIRV coat protein; four 20.7 1.3E+02 0.0043 19.8 3.7 34 274-307 6-43 (100)
9 3cx5_H Cytochrome B-C1 complex 19.0 1.4E+02 0.0048 20.6 3.9 38 290-327 42-79 (93)
10 1jrj_A Exendin-4; Trp-CAGE, GL 16.9 87 0.003 17.7 2.0 23 316-338 15-37 (39)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.5e-56 Score=400.27 Aligned_cols=287 Identities=21% Similarity=0.306 Sum_probs=251.6
Q ss_pred HHHHHHhHHHHHHHHhhchhHHHHHHHhcccccch------hhccccHHHHHHHHHHhhhhhhhccCcchhHHHhhhhhh
Q 019620 6 INGLAGAGGGIIAQLITYPLQTVNARQQTERDVKK------EKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQG 79 (338)
Q Consensus 6 ~~~~ag~~a~~~~~~~~~Pld~ik~r~Q~~~~~~~------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~l~~~~~~~ 79 (338)
.++++|++||+++.+++||||+||+|+|++..... ...|++.++++++|+++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999875322 246889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCcchHHHHHHHHHHHHhHhHhcchHHHHHHHHhhcccccCCCCCCccccccc
Q 019620 80 VYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSS 159 (338)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~ 159 (338)
++|.+||.+++.+.... ...+.+..+++|++|++++.++++|+|+||+|+|++...
T Consensus 83 i~f~~ye~~k~~~~~~~----------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-------------- 138 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS----------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-------------- 138 (303)
T ss_dssp HTTTHHHHHHHHHSCCC----------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--------------
T ss_pred HHHHHHHHHHHHHhcCC----------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--------------
Confidence 99999999998764310 124678899999999999999999999999999998431
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHhhCccccccchhhhhhh-ccchhhHHHHHHHHHHHHHHHhhhhhcCCCCCCHHHHH
Q 019620 160 EKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEIF 238 (338)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (338)
....+|++.++++++|++++|+++||||+.+++++ ++..+++|.+||.+++.+.+. .....+....+
T Consensus 139 ------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~------~~~~~~~~~~~ 206 (303)
T 2lck_A 139 ------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA------NLMTDDLPCHF 206 (303)
T ss_dssp ------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT------TSCCSCHHHHH
T ss_pred ------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCCCCchHHHH
Confidence 12245789999999999999999999999999999 889999999999999977542 12345677889
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhhccccCCCcccccCcHHHHHHHHHHhhchhhcccchhhhHHHHhHHHHHHHHHHH
Q 019620 239 LLGALAKLGATIVTYPLLVVKARLQAKQVTTGDKRHHYKGTLDAILKMIRYEGFYGFYQGMGTKIVQSVLAAAVLFMIKE 318 (338)
Q Consensus 239 ~~g~~ag~~~~~~~~Pld~iktr~q~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~~~~~~~~i~~~~ye 318 (338)
++|+++|++++++++|+|+||+|||++.. ..|.++++|+++|+++||++|||||+.++++|.+|..+++|.+||
T Consensus 207 ~~g~~ag~~~~~~~~P~dvvktrlq~~~~------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye 280 (303)
T 2lck_A 207 TSAFGAGFCTTVIASPVDVVKTRYMNSAL------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYE 280 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCS------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhccc------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999742 469999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 019620 319 ELVKGARFLLAQNKPK 334 (338)
Q Consensus 319 ~~~~~~~~~~~~~~~~ 334 (338)
.+++.+.+...+.++.
T Consensus 281 ~~k~~l~~~~~~~~~~ 296 (303)
T 2lck_A 281 QLKRALMAAYQSREAP 296 (303)
T ss_dssp HHHSCCCCHHHHHHCC
T ss_pred HHHHHHHHhccCCCCC
Confidence 9999887665554443
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.9e-55 Score=393.58 Aligned_cols=288 Identities=18% Similarity=0.278 Sum_probs=241.3
Q ss_pred hhHHHHHHHhHHHHHHHHhhchhHHHHHHHhcccccc---hhhccccHHHHHHHHHHhhhhhhhccCcchhHHHhhhhhh
Q 019620 3 DALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVK---KEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQG 79 (338)
Q Consensus 3 ~~~~~~~ag~~a~~~~~~~~~Pld~ik~r~Q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~l~~~~~~~ 79 (338)
+.+.++++|++||+++.+++||+|+||+|+|++.... ....|++.++++++++++||++|||||+.+++++.++..+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 3567899999999999999999999999999986432 2346889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCcchHHHHHHHHHHHHhHhHhcchHHHHHHHHhhcccccCCCCCCccccccc
Q 019620 80 VYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSS 159 (338)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~ 159 (338)
++|.+||.+++.+....... .+.....+..+++|++|++++.++++|+|+||+|+|++....
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~-----~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~------------- 147 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRH-----KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG------------- 147 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-------------
T ss_pred HHHHHHHHHHHHhccccCcc-----cchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-------------
Confidence 99999999998543211000 001123567899999999999999999999999999984311
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHhhCccccccchhhhhhh-ccchhhHHHHHHHHHHHHHHHhhhhhcCCCCCCHHHHH
Q 019620 160 EKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEIF 238 (338)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (338)
....+|++.++++++|++++|+++||||+.++++| ++..+++|.+||.+++.+.+. ...+....+
T Consensus 148 ------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--------~~~~~~~~~ 213 (297)
T 1okc_A 148 ------AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------KNVHIIVSW 213 (297)
T ss_dssp ------TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--------GCSCHHHHH
T ss_pred ------CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCccHHHHH
Confidence 12346789999999999999999999999999999 889999999999999865331 234677889
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhhccccCCCcccccCcHHHHHHHHHHhhchhhcccchhhhHHHHhHHHHHHHHHHH
Q 019620 239 LLGALAKLGATIVTYPLLVVKARLQAKQVTTGDKRHHYKGTLDAILKMIRYEGFYGFYQGMGTKIVQSVLAAAVLFMIKE 318 (338)
Q Consensus 239 ~~g~~ag~~~~~~~~Pld~iktr~q~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~~~~~~~~i~~~~ye 318 (338)
++|+++|++++++++|+|+||+|||++.... .....|.+.++|+++|+++||++|||||+.++++|. +..+++|.+||
T Consensus 214 ~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~-~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye 291 (297)
T 1okc_A 214 MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK-GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYD 291 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHhhcCCCC-CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHH
Confidence 9999999999999999999999999975321 234479999999999999999999999999999996 57899999999
Q ss_pred HHHHHH
Q 019620 319 ELVKGA 324 (338)
Q Consensus 319 ~~~~~~ 324 (338)
.+++++
T Consensus 292 ~~k~~l 297 (297)
T 1okc_A 292 EIKKFV 297 (297)
T ss_dssp TC----
T ss_pred HHHhhC
Confidence 998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8.4e-35 Score=259.80 Aligned_cols=195 Identities=17% Similarity=0.272 Sum_probs=164.6
Q ss_pred cchHHHHHHHHHHHHhHhHhcchHHHHHHHHhhcccccCCCCCCcccccccccCCCCCCCCCCCChHHHHHHHHHhhCcc
Q 019620 109 VGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSSHATVEPPPFATSHAIQEVYDEAGLW 188 (338)
Q Consensus 109 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~ 188 (338)
++.+..+++|++|++++.++++|+|+||+|+|++..... .....+|+++++++++|++++|++
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~-----------------~~~~~~~~~~~~~~~~i~~~eG~~ 67 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ-----------------ISAEKQYKGIIDCVVRIPKEQGFL 67 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS-----------------CCGGGSCCSHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc-----------------cccccccccHHHHHHHHHhccchh
Confidence 456788999999999999999999999999999853211 011235789999999999999999
Q ss_pred ccccchhhhhhh-ccchhhHHHHHHHHHHHHHHHhhhhhcCCCC--CCHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhc
Q 019620 189 GFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKDNSG--VTALEIFLLGALAKLGATIVTYPLLVVKARLQAK 265 (338)
Q Consensus 189 ~lyrG~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ag~~~~~~~~Pld~iktr~q~~ 265 (338)
+||||+.+++++ .+..+++|.+||.+++.+..... .... ......+++|+++|++++++++|+|+||+|+|++
T Consensus 68 glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~----~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~ 143 (297)
T 1okc_A 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD----RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD 143 (297)
T ss_dssp GGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred heecccHHHHHHHHHHHHHHHHHHHHHHHHhccccC----cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhcc
Confidence 999999999999 88999999999999996543210 1111 2346688999999999999999999999999997
Q ss_pred cccCCCcccccCcHHHHHHHHHHhhchhhcccchhhhHHHHhHHHHHHHHHHHHHHHHHH
Q 019620 266 QVTTGDKRHHYKGTLDAILKMIRYEGFYGFYQGMGTKIVQSVLAAAVLFMIKEELVKGAR 325 (338)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~ 325 (338)
.... .....|.+.++|+++|+++||++|||||+.++++|.+|..+++|.+||.+++.+.
T Consensus 144 ~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 144 VGKG-AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp CCSS-TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCC-CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5321 2345789999999999999999999999999999999999999999999998764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.4e-35 Score=261.19 Aligned_cols=188 Identities=20% Similarity=0.274 Sum_probs=165.4
Q ss_pred hhHHHHHHHhHHHHHHHHhhchhHHHHHHHhcccccchhhccccHHHHHHHHHHhhhhhhhccCcchhHHHhhhhhhHHH
Q 019620 3 DALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYY 82 (338)
Q Consensus 3 ~~~~~~~ag~~a~~~~~~~~~Pld~ik~r~Q~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~l~~~~~~~~~~ 82 (338)
+...++++|++||+++.++++|+|+||+|+|++........|++.++++++|+++||++|||||+.+.+++.++..+++|
T Consensus 103 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f 182 (303)
T 2lck_A 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999875433456889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCcchHHHHHHHHHHHHhHhHhcchHHHHHHHHhhcccccCCCCCCcccccccccC
Q 019620 83 YFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKS 162 (338)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~ 162 (338)
.+||.+++.+.... ....+....+++|++|+++++++++|+|+||+|+|++..
T Consensus 183 ~~ye~~k~~l~~~~---------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~------------------ 235 (303)
T 2lck_A 183 VTYDLIKDTLLKAN---------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL------------------ 235 (303)
T ss_dssp HHHHHHHHTTTTTT---------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS------------------
T ss_pred HHHHHHHHHHHhcc---------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc------------------
Confidence 99999998765321 112356788999999999999999999999999999732
Q ss_pred CCCCCCCCCCChHHHHHHHHHhhCccccccchhhhhhh-ccchhhHHHHHHHHHHHHHHHhh
Q 019620 163 SHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRA 223 (338)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~ 223 (338)
.+|+++++++++|++++|++|||||+.++++| ++..+++|.+||.+|+.+.+...
T Consensus 236 ------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 236 ------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp ------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred ------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 24779999999999999999999999999999 88999999999999987655443
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=29.63 E-value=36 Score=22.91 Aligned_cols=37 Identities=3% Similarity=0.029 Sum_probs=28.5
Q ss_pred chhhcccchhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019620 291 GFYGFYQGMGTKIVQSVLAAAVLFMIKEELVKGARFL 327 (338)
Q Consensus 291 G~~gl~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~~~ 327 (338)
|+-..+|-+.-+.+.++|..++...+|++..+.-..+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667778889999999999999988876544
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=23.74 E-value=64 Score=21.64 Aligned_cols=38 Identities=5% Similarity=0.009 Sum_probs=29.8
Q ss_pred hchhhcccchhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019620 290 EGFYGFYQGMGTKIVQSVLAAAVLFMIKEELVKGARFL 327 (338)
Q Consensus 290 eG~~gl~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~~~ 327 (338)
.|+...+|-+.-+.+.++|..++...+|+...+.-..+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~ 69 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKS 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHH
Confidence 45566677777788889999999999999988876544
No 7
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=21.50 E-value=1.1e+02 Score=17.34 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=15.9
Q ss_pred CchhHHHHHHHhHHHHHHHHh
Q 019620 1 MSDALINGLAGAGGGIIAQLI 21 (338)
Q Consensus 1 ~~~~~~~~~ag~~a~~~~~~~ 21 (338)
|.+.+.+|+.+.++|.+...+
T Consensus 2 mTpSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 2 ITPSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHH
Confidence 567889999998888775443
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=20.69 E-value=1.3e+02 Score=19.83 Aligned_cols=34 Identities=18% Similarity=0.481 Sum_probs=23.5
Q ss_pred cccCcHHHHHHHHHHhhch----hhcccchhhhHHHHh
Q 019620 274 HHYKGTLDAILKMIRYEGF----YGFYQGMGTKIVQSV 307 (338)
Q Consensus 274 ~~~~~~~~~~~~i~~~eG~----~gl~rG~~~~~~~~~ 307 (338)
.++.+.-+-+..++.+-|+ +.+|.|++...-|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4566666777777778776 558899888776654
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=19.00 E-value=1.4e+02 Score=20.59 Aligned_cols=38 Identities=8% Similarity=0.232 Sum_probs=31.2
Q ss_pred hchhhcccchhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019620 290 EGFYGFYQGMGTKIVQSVLAAAVLFMIKEELVKGARFL 327 (338)
Q Consensus 290 eG~~gl~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~~~ 327 (338)
.|+-..+|-+.-+.+.++|...+...+|+..++....+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 46677788888888899999999999999988876544
No 10
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=16.93 E-value=87 Score=17.74 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC
Q 019620 316 IKEELVKGARFLLAQNKPKSKPP 338 (338)
Q Consensus 316 ~ye~~~~~~~~~~~~~~~~~~~~ 338 (338)
-....|+++++++......+.|+
T Consensus 15 ~~~aak~fv~wL~~~k~r~~~pp 37 (39)
T 1jrj_A 15 EEEAVRLFIEWLKNGGPSSGAPP 37 (39)
T ss_dssp HHHHHHHHHHHHHTTGGGSSSCC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC
Confidence 34567888888887776655543
Done!