Query 019622
Match_columns 338
No_of_seqs 223 out of 906
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.3 1E-11 3.4E-16 110.8 9.6 114 223-338 75-194 (194)
2 3kf9_B MLCK2, myosin light cha 41.2 8.3 0.00029 21.6 0.7 12 59-70 3-14 (22)
3 1rpq_W Peptide E131; receptor- 20.7 30 0.001 19.5 0.7 10 271-280 1-10 (26)
4 2ofz_A Nucleocapsid protein; S 3.6 1.4E+02 0.0047 24.4 -1.3 15 52-68 65-79 (138)
5 3hd4_A Nucleoprotein; beta pla 3.4 1.4E+02 0.0049 24.3 -1.3 14 53-68 61-74 (139)
6 3jtz_A Integrase; four strande 3.1 6.1E+02 0.021 18.4 2.1 29 244-275 5-33 (88)
7 4djk_A Probable glutamate/gamm 2.8 2.6E+03 0.089 19.1 6.9 12 256-267 399-410 (511)
8 2y8t_A Apical membrane antigen 2.8 4E+02 0.014 25.7 0.8 15 256-276 48-62 (432)
9 1ssk_A Nucleocapsid protein; s 2.8 1.3E+02 0.0043 25.2 -2.4 14 53-68 79-92 (158)
10 2gec_A Nucleocapsid protein; N 2.5 1.7E+02 0.0058 23.9 -1.8 14 53-68 63-76 (139)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.28 E-value=1e-11 Score=110.80 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccCCcceeeccccccccccccchhHHHHHHHHHHHHhcCchhHHHH-H
Q 019622 223 RWFQWIGAAIFLWGWMHQRCCHAILGS-LRERAEQIDEYVIPHGDWFEIVSCPHYLAEIVIYAGLLVASGGTDITIWL-L 300 (338)
Q Consensus 223 ~~~~~~g~~lfl~~~~~q~~~h~~La~-LRk~~~~~~~y~iP~gglF~~vscPhY~~Eiliy~~~~l~~~~~~~~~~~-~ 300 (338)
.+..++|+++++.|......++.+|.+ .+...+.+++.++.+.|+|++++||||++|++.++|++++.++. .+..+ .
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~-~~~~~~~ 153 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNW-VVLIFGI 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence 456789999999999999999999954 34322234568899999999999999999999999999988642 22221 2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcC----cCCCCcceeecccC
Q 019622 301 FAFVVVNLVFAAAETQRWYIRKFD----NYPSNRYAIIPYVY 338 (338)
Q Consensus 301 ~~~v~~nl~~~A~~~h~wY~~~F~----~yp~~R~aiIPfI~ 338 (338)
+.+++. +..++...+++.+++|+ +|.++.+++||+|.
T Consensus 154 ~~~~~~-~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i~ 194 (194)
T 4a2n_B 154 VAWAIL-YFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV 194 (194)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC--
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhCHHHHHHHHhCCeeCceeC
Confidence 223333 34666777777888874 47778889999974
No 2
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=41.20 E-value=8.3 Score=21.59 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=9.9
Q ss_pred ccchhhHHHHHH
Q 019622 59 RFFCHFYVVAVV 70 (338)
Q Consensus 59 ~wF~HFYv~~~~ 70 (338)
+|-+|||++..+
T Consensus 3 ~WkK~f~av~Aa 14 (22)
T 3kf9_B 3 RWKKNFIAVSAA 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 688999998764
No 3
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=20.68 E-value=30 Score=19.53 Aligned_cols=10 Identities=50% Similarity=1.215 Sum_probs=7.6
Q ss_pred ccccchhHHH
Q 019622 271 VSCPHYLAEI 280 (338)
Q Consensus 271 vscPhY~~Ei 280 (338)
|.|||+-.|.
T Consensus 1 vqcphfcyel 10 (26)
T 1rpq_W 1 VQCPHFCYEL 10 (26)
T ss_dssp CCCCTHHHHS
T ss_pred CCCCeeeeec
Confidence 5699988773
No 4
>2ofz_A Nucleocapsid protein; SARS coronavirus nucleocapsid RNA binding N-terminal domain, N protein, SARS-ORF9A, viral protein; 1.17A {Sars coronavirus TOR2} PDB: 2og3_A
Probab=3.56 E-value=1.4e+02 Score=24.36 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=12.1
Q ss_pred ceeecccccchhhHHHH
Q 019622 52 HKFTVPQRFFCHFYVVA 68 (338)
Q Consensus 52 ~~~~VPk~wF~HFYv~~ 68 (338)
+..++|-+| |||.+|
T Consensus 65 ~rk~l~prW--yFYYlG 79 (138)
T 2ofz_A 65 KMKELSPRW--YFYYLG 79 (138)
T ss_dssp CEEECCCEE--EEEETT
T ss_pred ceeeCCCce--EEEEeC
Confidence 457899998 799875
No 5
>3hd4_A Nucleoprotein; beta platform beta hairpin, golgi apparatus, nucleus, RNA-binding, transcription, transcriptio regulation, virion; 1.75A {Murine hepatitis virus}
Probab=3.45 E-value=1.4e+02 Score=24.27 Aligned_cols=14 Identities=21% Similarity=0.467 Sum_probs=11.4
Q ss_pred eeecccccchhhHHHH
Q 019622 53 KFTVPQRFFCHFYVVA 68 (338)
Q Consensus 53 ~~~VPk~wF~HFYv~~ 68 (338)
..++|-+| |||.++
T Consensus 61 r~~l~prW--~FYY~G 74 (139)
T 3hd4_A 61 QKQLLPRW--YFYYLG 74 (139)
T ss_dssp EEECCCEE--EEEETT
T ss_pred EeeCCCcE--EEEEec
Confidence 56899998 899875
No 6
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=3.12 E-value=6.1e+02 Score=18.39 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=19.3
Q ss_pred HHHHhhccccccCCcceeeccccccccccccc
Q 019622 244 HAILGSLRERAEQIDEYVIPHGDWFEIVSCPH 275 (338)
Q Consensus 244 h~~La~LRk~~~~~~~y~iP~gglF~~vscPh 275 (338)
+.++.++++ .++.|.+.+|+.+-....|+
T Consensus 5 ~~~i~~~kp---~~k~~~~~Dg~GL~L~V~ps 33 (88)
T 3jtz_A 5 DAKIRTLKP---SDKPFKVSDSHGLYLLVKPG 33 (88)
T ss_dssp HHHHHHCCC---CSSCEEEECSTTEEEEECTT
T ss_pred HHHHhcCCC---CCCcEEEecCCceEEEEecC
Confidence 456667765 35668888877776666664
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=2.80 E-value=2.6e+03 Score=19.05 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=6.9
Q ss_pred CCcceeeccccc
Q 019622 256 QIDEYVIPHGDW 267 (338)
Q Consensus 256 ~~~~y~iP~ggl 267 (338)
.++++++|.|.+
T Consensus 399 ~~~~~~~~~~~~ 410 (511)
T 4djk_A 399 LKRTFNIPGGKG 410 (511)
T ss_dssp CCCSCCCSSTTH
T ss_pred CCCCeecCCCch
Confidence 345677775443
No 8
>2y8t_A Apical membrane antigen, putative; membrane protein, moving junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii} PDB: 2y8r_A* 2y8s_A* 2x2z_A*
Probab=2.80 E-value=4e+02 Score=25.74 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=11.1
Q ss_pred CCcceeeccccccccccccch
Q 019622 256 QIDEYVIPHGDWFEIVSCPHY 276 (338)
Q Consensus 256 ~~~~y~iP~gglF~~vscPhY 276 (338)
++++|++|.| +||+|
T Consensus 48 g~~~YRiP~G------kCPv~ 62 (432)
T 2y8t_A 48 DGTLYREPAG------LCPIW 62 (432)
T ss_dssp TTEEEEECCC------SSCEE
T ss_pred cCccccccCC------CCCcc
Confidence 4568999965 57776
No 9
>1ssk_A Nucleocapsid protein; structural protein; NMR {Sars coronavirus} SCOP: b.148.1.1
Probab=2.76 E-value=1.3e+02 Score=25.15 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=11.3
Q ss_pred eeecccccchhhHHHH
Q 019622 53 KFTVPQRFFCHFYVVA 68 (338)
Q Consensus 53 ~~~VPk~wF~HFYv~~ 68 (338)
.-++|-+| |||.+|
T Consensus 79 rk~lpprW--~FYYlG 92 (158)
T 1ssk_A 79 MKELSPRW--YFYYLG 92 (158)
T ss_dssp CCCCCCEE--EEEEES
T ss_pred eeeCCCce--EEEEeC
Confidence 57899998 788765
No 10
>2gec_A Nucleocapsid protein; N protein, coronavirus, IBV N protein, viral, viral protein; 1.30A {Infectious bronchitis virus} SCOP: b.148.1.1 PDB: 2bxx_A 2c86_A 2btl_A
Probab=2.53 E-value=1.7e+02 Score=23.89 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=11.1
Q ss_pred eeecccccchhhHHHH
Q 019622 53 KFTVPQRFFCHFYVVA 68 (338)
Q Consensus 53 ~~~VPk~wF~HFYv~~ 68 (338)
.-++|-+| |||.+|
T Consensus 63 r~~lpprW--yFYYlG 76 (139)
T 2gec_A 63 RKPVPDAW--YFYYTG 76 (139)
T ss_dssp CEEEEEEE--EEEETT
T ss_pred ceeCCCce--EEEEec
Confidence 46789998 899865
Done!