Query 019622
Match_columns 338
No_of_seqs 223 out of 906
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 04:36:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3e46a1 a.5.2.1 (A:157-198) Ub 5.7 75 0.0055 18.5 0.4 11 271-281 1-11 (42)
2 d1rwza1 d.131.1.2 (A:1-122) Pr 4.6 60 0.0044 23.5 -0.7 14 53-66 48-61 (122)
3 d2izva1 a.271.1.1 (A:386-429) 4.5 2.8E+02 0.02 16.5 2.6 35 4-40 3-37 (44)
4 d1vmba_ d.58.14.1 (A:) Ribosom 4.4 1.3E+02 0.0096 21.0 1.2 13 142-154 2-14 (107)
5 d1u7ba1 d.131.1.2 (A:1-126) Pr 3.2 93 0.0068 22.4 -0.7 14 53-66 49-62 (126)
6 d1oyia_ a.4.5.19 (A:) dsRNA-bi 3.2 1.2E+02 0.0087 18.9 -0.0 9 54-62 52-60 (62)
7 d1plqa1 d.131.1.2 (A:1-126) Pr 2.9 1.1E+02 0.0081 22.0 -0.5 14 53-66 49-62 (126)
8 d2geca1 b.148.1.1 (A:23-160) N 2.6 78 0.0057 23.9 -1.8 14 53-68 62-75 (138)
9 d2j5aa1 d.58.14.1 (A:3-108) Ri 2.5 2.6E+02 0.019 19.2 1.2 12 143-154 6-17 (106)
10 d1s95a_ d.159.1.3 (A:) Serine/ 2.4 2.8E+02 0.021 23.4 1.5 24 256-279 255-279 (324)
No 1
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.69 E-value=75 Score=18.51 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=8.4
Q ss_pred ccccchhHHHH
Q 019622 271 VSCPHYLAEIV 281 (338)
Q Consensus 271 vscPhY~~Eil 281 (338)
||+|.|+..|=
T Consensus 1 vsspeyt~kid 11 (42)
T d3e46a1 1 VSSPEYTKKIE 11 (42)
T ss_dssp CCCHHHHHHHH
T ss_pred CCchHHHHHHH
Confidence 57888888764
No 2
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.65 E-value=60 Score=23.54 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=13.0
Q ss_pred eeecccccchhhHH
Q 019622 53 KFTVPQRFFCHFYV 66 (338)
Q Consensus 53 ~~~VPk~wF~HFYv 66 (338)
.+.+|+.||.+|++
T Consensus 48 ~l~L~~~~F~~Y~~ 61 (122)
T d1rwza1 48 IVDIPKDSFEVYNI 61 (122)
T ss_dssp EEEEEGGGSSEEEE
T ss_pred EEEECcccCeEEec
Confidence 78999999999987
No 3
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.52 E-value=2.8e+02 Score=16.51 Aligned_cols=35 Identities=20% Similarity=0.069 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCcchhhHHhhhhhh
Q 019622 4 WLAGLLRAAWVAGILPLIIASLPSSRLNSFHGALLGF 40 (338)
Q Consensus 4 ~~~~~lr~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 40 (338)
+++.+||..=.--+-.--|..+|+|. ++++.+.+|
T Consensus 3 SLQhLCR~~I~~~t~~d~I~~LPLP~--~Lk~yLkey 37 (44)
T d2izva1 3 SLQHICRTVICNCTTYDGIDALPIPS--SMKLYLKEY 37 (44)
T ss_dssp CHHHHHHHHHHHHSCHHHHHTSSSCH--HHHHHHTSS
T ss_pred CHHHHHHHHHHHcCCcCCcccCCCCH--HHHHHHHhc
Confidence 57778886533333223378899984 355555444
No 4
>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]}
Probab=4.38 E-value=1.3e+02 Score=21.00 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=10.8
Q ss_pred hhheeeeEEeecC
Q 019622 142 RRLIETIYTFQYS 154 (338)
Q Consensus 142 rRl~Et~~V~~fS 154 (338)
-|.||+.++.++.
T Consensus 2 ~R~YE~~~Il~p~ 14 (107)
T d1vmba_ 2 ERIYESMFIIAPN 14 (107)
T ss_dssp CEEEEEEEEECTT
T ss_pred CceeEEEEEECCC
Confidence 3899999998765
No 5
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.24 E-value=93 Score=22.44 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=12.9
Q ss_pred eeecccccchhhHH
Q 019622 53 KFTVPQRFFCHFYV 66 (338)
Q Consensus 53 ~~~VPk~wF~HFYv 66 (338)
.+..|+.||.+|++
T Consensus 49 ~l~L~~~~F~~Y~~ 62 (126)
T d1u7ba1 49 QLTLRSEGFDTYRC 62 (126)
T ss_dssp EEEEEGGGSSEEEE
T ss_pred EEEECHHHCceeEE
Confidence 68999999999987
No 6
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=3.24 E-value=1.2e+02 Score=18.88 Aligned_cols=9 Identities=33% Similarity=0.755 Sum_probs=7.2
Q ss_pred eecccccch
Q 019622 54 FTVPQRFFC 62 (338)
Q Consensus 54 ~~VPk~wF~ 62 (338)
=++|.|||.
T Consensus 52 ~d~pprw~~ 60 (62)
T d1oyia_ 52 DDIPPRWFM 60 (62)
T ss_dssp SSSSCEEES
T ss_pred CCCCCcccc
Confidence 368999986
No 7
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.93 E-value=1.1e+02 Score=21.96 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=12.6
Q ss_pred eeecccccchhhHH
Q 019622 53 KFTVPQRFFCHFYV 66 (338)
Q Consensus 53 ~~~VPk~wF~HFYv 66 (338)
.+..|+.||.+|.+
T Consensus 49 ~l~L~~~~F~~Y~~ 62 (126)
T d1plqa1 49 SLEIGVEAFQEYRC 62 (126)
T ss_dssp EEEEEGGGSSEECC
T ss_pred EEEECHHHCceeee
Confidence 78999999999985
No 8
>d2geca1 b.148.1.1 (A:23-160) Nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=2.55 E-value=78 Score=23.90 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=11.3
Q ss_pred eeecccccchhhHHHH
Q 019622 53 KFTVPQRFFCHFYVVA 68 (338)
Q Consensus 53 ~~~VPk~wF~HFYv~~ 68 (338)
.-++|.+| |||.+|
T Consensus 62 r~~lp~~w--yFYY~G 75 (138)
T d2geca1 62 RKPVPDAW--YFYYTG 75 (138)
T ss_dssp CEEEEEEE--EEEETT
T ss_pred eeeCCCce--EEEEec
Confidence 56899998 788865
No 9
>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus [TaxId: 63363]}
Probab=2.49 E-value=2.6e+02 Score=19.15 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.3
Q ss_pred hheeeeEEeecC
Q 019622 143 RLIETIYTFQYS 154 (338)
Q Consensus 143 Rl~Et~~V~~fS 154 (338)
|.||+.++.++.
T Consensus 6 r~YE~~~Il~p~ 17 (106)
T d2j5aa1 6 RYYETVFAVKPT 17 (106)
T ss_dssp EEEEEEEEECTT
T ss_pred ccccEEEEECCC
Confidence 789999998765
No 10
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.40 E-value=2.8e+02 Score=23.38 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=18.9
Q ss_pred CCcceeecccc-ccccccccchhHH
Q 019622 256 QIDEYVIPHGD-WFEIVSCPHYLAE 279 (338)
Q Consensus 256 ~~~~y~iP~gg-lF~~vscPhY~~E 279 (338)
..++|+...+| +...-|+|||.++
T Consensus 255 v~~G~~~~~~~kviTvFSa~nY~~~ 279 (324)
T d1s95a_ 255 KAEGYEVAHGGRCVTVFSAPNYCDQ 279 (324)
T ss_dssp CTTSEEEEGGGTEEEECCCSSGGGT
T ss_pred ccCceEEecCCcEEEEeCCCccCCC
Confidence 35778888655 8888999999864
Done!