Query 019623
Match_columns 338
No_of_seqs 97 out of 99
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 03:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01627 A_thal_3515 uncharac 100.0 7E-118 1E-122 812.8 20.9 222 72-304 1-225 (225)
2 PF04669 Polysacc_synt_4: Poly 100.0 4.8E-86 1E-90 593.0 -12.1 186 96-285 1-190 (190)
3 COG0421 SpeE Spermidine syntha 94.8 0.2 4.4E-06 48.2 9.4 160 93-289 60-235 (282)
4 PLN02823 spermine synthase 94.0 0.42 9E-06 47.0 10.0 98 109-240 102-203 (336)
5 PLN02476 O-methyltransferase 93.7 0.61 1.3E-05 45.0 10.3 119 75-222 81-206 (278)
6 PLN02781 Probable caffeoyl-CoA 93.5 0.44 9.5E-06 43.8 8.6 117 76-221 30-155 (234)
7 PF01596 Methyltransf_3: O-met 92.8 0.75 1.6E-05 42.1 9.0 144 75-259 7-158 (205)
8 PRK01581 speE spermidine synth 92.2 1.2 2.7E-05 45.0 10.3 142 108-289 148-312 (374)
9 TIGR00417 speE spermidine synt 91.6 1.1 2.4E-05 41.6 8.8 47 109-155 71-119 (270)
10 PF01564 Spermine_synth: Sperm 89.5 0.72 1.6E-05 42.9 5.5 104 103-242 70-177 (246)
11 PLN02366 spermidine synthase 89.1 3.2 7E-05 40.3 9.7 47 109-155 90-138 (308)
12 PRK00811 spermidine synthase; 89.1 2 4.4E-05 40.5 8.2 47 109-155 75-123 (283)
13 PLN02589 caffeoyl-CoA O-methyl 86.9 3.7 7.9E-05 38.9 8.4 120 76-224 43-170 (247)
14 PRK04457 spermidine synthase; 86.0 8.1 0.00018 36.2 10.2 44 109-152 65-110 (262)
15 PRK03612 spermidine synthase; 83.8 5.6 0.00012 41.0 8.7 42 109-150 296-339 (521)
16 cd02042 ParA ParA and ParB of 69.8 5 0.00011 31.1 3.0 14 211-224 40-53 (104)
17 PF10718 Ycf34: Hypothetical c 67.4 2 4.3E-05 35.2 0.3 31 195-229 41-71 (77)
18 COG0003 ArsA Predicted ATPase 61.5 2.2 4.8E-05 42.0 -0.6 26 197-222 112-138 (322)
19 cd05013 SIS_RpiR RpiR-like pro 50.4 1E+02 0.0022 24.2 7.3 79 97-178 2-85 (139)
20 PRK00377 cbiT cobalt-precorrin 49.9 72 0.0016 28.0 7.0 66 85-151 15-84 (198)
21 COG4122 Predicted O-methyltran 49.3 2E+02 0.0043 27.3 10.1 119 74-225 23-147 (219)
22 TIGR03587 Pse_Me-ase pseudamin 45.2 89 0.0019 28.2 7.0 61 95-155 28-90 (204)
23 cd02035 ArsA ArsA ATPase funct 44.2 7.2 0.00016 35.0 -0.1 23 199-221 102-124 (217)
24 TIGR03127 RuMP_HxlB 6-phospho 43.8 1.4E+02 0.0031 25.7 7.7 79 93-178 15-97 (179)
25 cd00550 ArsA_ATPase Oxyanion-t 42.0 7.9 0.00017 35.8 -0.2 13 208-220 122-134 (254)
26 PRK10892 D-arabinose 5-phospha 42.0 1.4E+02 0.003 28.2 8.0 80 97-178 35-119 (326)
27 PF13659 Methyltransf_26: Meth 41.9 29 0.00062 27.0 3.0 42 113-154 3-45 (117)
28 PF06564 YhjQ: YhjQ protein; 39.4 16 0.00034 34.9 1.4 16 209-224 116-131 (243)
29 cd03110 Fer4_NifH_child This p 38.0 19 0.00042 30.5 1.6 16 209-224 91-106 (179)
30 PF09954 DUF2188: Uncharacteri 37.9 30 0.00064 25.8 2.4 51 210-265 10-60 (62)
31 KOG4417 Predicted endonuclease 36.9 20 0.00044 34.8 1.6 24 200-223 105-133 (261)
32 TIGR00345 arsA arsenite-activa 36.5 19 0.00042 34.0 1.5 26 209-234 111-140 (284)
33 PF13479 AAA_24: AAA domain 35.7 46 0.001 29.9 3.7 30 110-143 2-34 (213)
34 cd02038 FleN-like FleN is a me 35.1 52 0.0011 27.5 3.6 14 211-224 45-58 (139)
35 PRK15128 23S rRNA m(5)C1962 me 35.1 1.5E+02 0.0032 30.0 7.4 88 103-220 213-303 (396)
36 PRK09331 Sep-tRNA:Cys-tRNA syn 34.7 2.3E+02 0.005 27.4 8.4 119 109-237 100-235 (387)
37 PHA02663 hypothetical protein; 34.2 29 0.00062 31.7 2.1 23 224-246 82-105 (172)
38 KOG3022 Predicted ATPase, nucl 32.4 29 0.00062 34.7 1.9 72 206-290 149-228 (300)
39 PF02374 ArsA_ATPase: Anion-tr 32.1 25 0.00054 33.9 1.5 27 208-234 124-154 (305)
40 COG1192 Soj ATPases involved i 32.1 26 0.00057 31.6 1.5 15 208-222 117-131 (259)
41 PF02310 B12-binding: B12 bind 31.3 2.2E+02 0.0047 22.5 6.5 62 97-178 16-77 (121)
42 COG0489 Mrp ATPases involved i 31.2 16 0.00034 34.6 -0.0 24 199-222 155-178 (265)
43 TIGR02469 CbiT precorrin-6Y C5 30.1 1.8E+02 0.004 22.3 5.7 57 93-150 2-61 (124)
44 TIGR01969 minD_arch cell divis 30.1 30 0.00065 30.5 1.5 17 209-225 107-123 (251)
45 cd06451 AGAT_like Alanine-glyo 28.7 3.4E+02 0.0074 25.2 8.2 106 70-178 6-122 (356)
46 PF12273 RCR: Chitin synthesis 28.5 37 0.00081 28.7 1.8 11 38-48 9-19 (130)
47 cd03111 CpaE_like This protein 27.7 38 0.00082 27.2 1.6 22 212-242 44-65 (106)
48 TIGR01968 minD_bact septum sit 27.2 37 0.0008 30.0 1.6 15 210-224 111-125 (261)
49 PHA02518 ParA-like protein; Pr 27.2 35 0.00075 29.2 1.4 13 210-222 76-88 (211)
50 PF12273 RCR: Chitin synthesis 26.9 68 0.0015 27.2 3.0 11 37-47 5-15 (130)
51 PRK07402 precorrin-6B methylas 26.5 1.8E+02 0.004 25.3 5.8 74 72-152 8-84 (196)
52 PF01656 CbiA: CobQ/CobB/MinD/ 25.9 37 0.0008 28.4 1.3 15 211-225 95-109 (195)
53 cd01078 NAD_bind_H4MPT_DH NADP 25.8 4.5E+02 0.0097 22.9 10.6 132 94-229 8-161 (194)
54 KOG3970 Predicted E3 ubiquitin 25.3 72 0.0016 31.5 3.2 24 30-53 251-274 (299)
55 TIGR00563 rsmB ribosomal RNA s 24.6 68 0.0015 32.0 3.0 32 125-156 354-391 (426)
56 PRK02947 hypothetical protein; 24.4 5.9E+02 0.013 23.8 10.4 85 95-179 23-132 (246)
57 PF04072 LCM: Leucine carboxyl 24.2 98 0.0021 27.2 3.6 44 102-145 70-113 (183)
58 PF02254 TrkA_N: TrkA-N domain 23.5 1.3E+02 0.0028 23.5 3.9 105 114-267 1-107 (116)
59 cd03287 ABC_MSH3_euk MutS3 hom 23.3 3.5E+02 0.0075 25.1 7.2 70 95-165 95-177 (222)
60 PF12847 Methyltransf_18: Meth 23.2 1.8E+02 0.0038 22.3 4.5 41 112-152 3-45 (112)
61 PRK11557 putative DNA-binding 23.1 5.9E+02 0.013 23.4 8.9 83 93-178 113-200 (278)
62 PRK11337 DNA-binding transcrip 23.0 5.3E+02 0.011 24.0 8.4 82 93-178 125-212 (292)
63 PRK15482 transcriptional regul 22.9 4.3E+02 0.0092 24.6 7.7 83 93-178 120-207 (285)
64 cd02037 MRP-like MRP (Multiple 22.9 47 0.001 28.1 1.4 15 209-223 66-80 (169)
65 TIGR00347 bioD dethiobiotin sy 22.2 55 0.0012 27.5 1.6 30 209-242 98-127 (166)
66 PF13840 ACT_7: ACT domain ; P 21.8 27 0.00058 26.2 -0.3 32 208-242 3-34 (65)
67 TIGR03371 cellulose_yhjQ cellu 21.6 50 0.0011 29.2 1.3 14 211-224 115-128 (246)
68 PF10672 Methyltrans_SAM: S-ad 21.5 1.5E+02 0.0032 29.0 4.6 93 93-220 109-205 (286)
69 cd05014 SIS_Kpsf KpsF-like pro 21.4 2E+02 0.0043 22.9 4.6 66 113-178 2-72 (128)
70 PRK11670 antiporter inner memb 21.3 56 0.0012 32.4 1.7 15 210-224 215-229 (369)
71 PRK09620 hypothetical protein; 21.2 2.7E+02 0.0059 26.0 6.1 75 133-221 124-200 (229)
72 COG1737 RpiR Transcriptional r 21.0 6E+02 0.013 24.0 8.4 103 74-179 92-203 (281)
73 PF10476 DUF2448: Protein of u 21.0 1.5E+02 0.0034 28.3 4.4 24 30-53 22-46 (204)
74 PRK06067 flagellar accessory p 21.0 5.2E+02 0.011 23.1 7.7 82 205-290 115-203 (234)
75 cd02036 MinD Bacterial cell di 20.8 60 0.0013 26.8 1.6 12 212-223 64-75 (179)
76 PHA02913 TGF-beta-like protein 20.1 54 0.0012 30.4 1.2 23 200-224 80-103 (172)
77 COG0463 WcaA Glycosyltransfera 20.0 28 0.00061 25.9 -0.5 25 198-223 21-45 (291)
No 1
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=100.00 E-value=6.7e-118 Score=812.82 Aligned_cols=222 Identities=44% Similarity=0.777 Sum_probs=213.3
Q ss_pred CCCcHHHHHHHHHhhccCCCC--CCHHHHHHHHHHHhhcCCCccEEEecCCchhhhhhhccCCCcEEEecCChhHHHHhh
Q 019623 72 SSSSSIITAALLHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFE 149 (338)
Q Consensus 72 ~~lp~~v~~ALvHYAt~sn~t--qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTVFLEEd~~~i~~~~ 149 (338)
+++|++|++||||||| ||++ ||.+||+++++||++ ||||||||||||||||||++|||||||||||||++||++++
T Consensus 1 t~~p~~~a~AlvhYat-sn~t~q~s~~Ei~~~~~VL~~-raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~ 78 (225)
T TIGR01627 1 TTFPLSPADALQHYRA-SNGPTALMEKELKLLSDVLTR-RSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAE 78 (225)
T ss_pred CCCchhHHHHHHHHHh-cCCCcccCHHHHHHHHHHHHh-cCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHh
Confidence 4799999999999998 7888 999999999999999 99999999999999999999999999999999999999999
Q ss_pred hcCCCceeEEeEecccccchHHHHHHHHhcCCCCCccccccc-cccccccccCCCcccccccccEEEEcCCCCCCCCCCC
Q 019623 150 KNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLL-FSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPG 228 (338)
Q Consensus 150 ~~~P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~-~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPG 228 (338)
++||+||+|+|+|+|+++||++||+++|+ +++|+|+|+.+ +|+|||||||||+||||++|||||||||+||+||+||
T Consensus 79 ~~~p~leay~V~Y~t~~~~a~~LL~~~~~--~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPG 156 (225)
T TIGR01627 79 VNPPNTRIYSVKYHTKVRNAYNLLQHARA--NPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPG 156 (225)
T ss_pred hcCCcceEEEEEeehhhhhHHHHHHHhcc--CCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCc
Confidence 99999999999999999999999998986 59999999655 9999999999999999999999999999999999999
Q ss_pred CchhHhhHHHHHhhccCCCCcceEEEecCChhHHHHhhhhhccccccccccCceeeEEeCCCCCCCCCcccccCcC
Q 019623 229 RMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFC 304 (338)
Q Consensus 229 RM~aIyTAavmARar~~g~~~TdVfVHDvdR~VE~~~s~EFLC~~nLve~~grL~HF~Ip~~~~~~g~~~~~~~FC 304 (338)
||+||||||||||+|++| ++||||||||||+|||+|||||||++|||+++||||||+||+| ..++++||
T Consensus 157 RM~aIyTAav~AR~r~~g-~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~------~~~~~~FC 225 (225)
T TIGR01627 157 RMSSIYTAAVLARKGSSG-STTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQ------SNASRAFC 225 (225)
T ss_pred chhhHHHHHHHHHhccCC-CCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCC------cCCCCCCC
Confidence 999999999999999976 5799999999999999999999999999999999999999998 45567899
No 2
>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins. ; PDB: 2JYN_A.
Probab=100.00 E-value=4.8e-86 Score=593.00 Aligned_cols=186 Identities=51% Similarity=0.885 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhcCCC-ccEEEecCCchhhhhhhccCCCcEEEecCChhHHHHhhhcCCCceeEEeEecccccchHHHHH
Q 019623 96 AELTAVADALSRCSPS-CNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLH 174 (338)
Q Consensus 96 ~Ei~~~~~vL~~~raP-CNfLVFGLg~dsllW~aLN~gGrTVFLEEd~~~i~~~~~~~P~leay~V~Y~T~v~ea~~LL~ 174 (338)
.||+.+++||++ ++| |||||||||||||||+++||||||||||||++|+++++++||+|++|+|+|+|++.++++||+
T Consensus 1 ~E~~~a~~~l~~-~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~ 79 (190)
T PF04669_consen 1 IEIAWAAKVLQH-REPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLS 79 (190)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSS
T ss_pred CcHHHHHHHHHH-hCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhC
Confidence 599999999999 667 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhhccCCCCc-ceEE
Q 019623 175 AVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKK-THVF 253 (338)
Q Consensus 175 ~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARar~~g~~~-TdVf 253 (338)
.+|+ ++|+|+|++++|+|||||||||++||+++|||||||||+||+|+|||||+||||||||||+|++|..+ ||||
T Consensus 80 ~~~~---~~C~~~~~~~~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~Vf 156 (190)
T PF04669_consen 80 KARS---PECRPVQNLRFSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVF 156 (190)
T ss_dssp HH------------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEE
T ss_pred cccc---ccccccccccccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEE
Confidence 9996 89999999999999999999999999999999999999999999999999999999999999876433 6999
Q ss_pred EecCChhHHHHhhhhhccccccccccCc--eeeE
Q 019623 254 VHDFNREVERVCSEEFLCEENLVEVVDK--LAHF 285 (338)
Q Consensus 254 VHDvdR~VE~~~s~EFLC~~nLve~~gr--L~HF 285 (338)
||||||+|||+||+||||+||+++++|+ ||||
T Consensus 157 Vhdv~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF 190 (190)
T PF04669_consen 157 VHDVDRPVEKWFSEEFLCIEILRNREGRNDLWHF 190 (190)
T ss_dssp E-HH----------HHHHHHHHHHHTTTTGGG--
T ss_pred EEcccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence 9999999999999999999999999999 9999
No 3
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.75 E-value=0.2 Score=48.17 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHhhcCCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCce--eEEeEecccccc
Q 019623 93 MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFE--IYDVQYTTKVEE 168 (338)
Q Consensus 93 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~le--ay~V~Y~T~v~e 168 (338)
...-|.-+-...+.+ ..|-+.||-|+|--+.++..+.|. -|-+..|=|+..|+-.++-.|... ++|=+-.-.+.+
T Consensus 60 ~~yhEml~h~~~~ah-~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D 138 (282)
T COG0421 60 FIYHEMLAHVPLLAH-PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD 138 (282)
T ss_pred HHHHHHHHhchhhhC-CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc
Confidence 445566666666776 667799999999999999999998 699999999999999998888775 443444445567
Q ss_pred hHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHH---hh-cc
Q 019623 169 MNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLA---RS-KK 244 (338)
Q Consensus 169 a~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmA---Ra-r~ 244 (338)
+.+.|+. |. -.+|||++|.-- |+.|| .+.||.-..- |. +.
T Consensus 139 g~~~v~~--------~~-----------------------~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~ 182 (282)
T COG0421 139 GVEFLRD--------CE-----------------------EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKE 182 (282)
T ss_pred HHHHHHh--------CC-----------------------CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCC
Confidence 7776652 11 169999999766 44443 4566665443 33 22
Q ss_pred CCCCcce---EEEe-----cCChhHHHHhhhhhccccccccccCceeeEEeCC
Q 019623 245 AGRKKTH---VFVH-----DFNREVERVCSEEFLCEENLVEVVDKLAHFVVEP 289 (338)
Q Consensus 245 ~g~~~Td---VfVH-----DvdR~VE~~~s~EFLC~~nLve~~grL~HF~Ip~ 289 (338)
+|--.+- .|.| +..|.++++|+.-=.+.-.+-.-.+..|-|.+-+
T Consensus 183 ~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s 235 (282)
T COG0421 183 DGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVAS 235 (282)
T ss_pred CcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEee
Confidence 3321121 4444 6789999999988777777777788889999944
No 4
>PLN02823 spermine synthase
Probab=94.04 E-value=0.42 Score=46.95 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=65.1
Q ss_pred CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCce-eE-EeEecccccchHHHHHHHHhcCCCCC
Q 019623 109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFE-IY-DVQYTTKVEEMNPTLHAVRKQFKDDC 184 (338)
Q Consensus 109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~le-ay-~V~Y~T~v~ea~~LL~~~r~~~~~~C 184 (338)
..|.+.||.|+|--++....+.|. .+-+.+|=|+.-++-+++-+|... .+ +=+-+-.+.++.+.|+ ..
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---~~----- 173 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---KR----- 173 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---hC-----
Confidence 579999999999888877777764 467999999999999987766321 11 1122233456666553 10
Q ss_pred ccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHH
Q 019623 185 RPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLA 240 (338)
Q Consensus 185 ~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmA 240 (338)
+-.||||++|.+. |...|-....||.-.+.
T Consensus 174 -----------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~ 203 (336)
T PLN02823 174 -----------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE 203 (336)
T ss_pred -----------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence 1259999999865 43333345688866544
No 5
>PLN02476 O-methyltransferase
Probab=93.73 E-value=0.61 Score=45.00 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=75.5
Q ss_pred cHHHHHHHHHhhccC--CCCCCHHHHHHHHHHHhhcCCCccEEEecCCch-hhhhhhc--cCCCcEEEecCChhHHHHhh
Q 019623 75 SSIITAALLHYTLTS--NSTMTSAELTAVADALSRCSPSCNFLVFGLTHE-TLLWKSL--NFQGHTIFVDESEFLVQSFE 149 (338)
Q Consensus 75 p~~v~~ALvHYAt~s--n~tqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d-sllW~aL--N~gGrTVFLEEd~~~i~~~~ 149 (338)
++++++.|.+||... +..+...|.......|.+...|=++|=.|-+-. |.+|.+. ..+|+-+=+|-|+++++.++
T Consensus 81 ~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar 160 (278)
T PLN02476 81 EPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK 160 (278)
T ss_pred CCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 445677777777633 122445555555555555588999999976332 3445543 56899999999999988777
Q ss_pred hcC--CCceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCC
Q 019623 150 KNH--PDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGY 222 (338)
Q Consensus 150 ~~~--P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy 222 (338)
+.. -+++ ..|.. ...+|.+.|....++ . .+-.+|+|+|||+++-
T Consensus 161 ~n~~~aGl~-~~I~l--i~GdA~e~L~~l~~~-~-------------------------~~~~FD~VFIDa~K~~ 206 (278)
T PLN02476 161 RYYELAGVS-HKVNV--KHGLAAESLKSMIQN-G-------------------------EGSSYDFAFVDADKRM 206 (278)
T ss_pred HHHHHcCCC-CcEEE--EEcCHHHHHHHHHhc-c-------------------------cCCCCCEEEECCCHHH
Confidence 543 3443 33433 346788888755431 0 0234899999999853
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.51 E-value=0.44 Score=43.76 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhccC--CCC--CCHHHHHHHHHHHhhcCCCccEEEecC--Cchhhhhhh-ccCCCcEEEecCChhHHHHh
Q 019623 76 SIITAALLHYTLTS--NST--MTSAELTAVADALSRCSPSCNFLVFGL--THETLLWKS-LNFQGHTIFVDESEFLVQSF 148 (338)
Q Consensus 76 ~~v~~ALvHYAt~s--n~t--qt~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~a-LN~gGrTVFLEEd~~~i~~~ 148 (338)
.++++.|.+||... ... +...+.......|.+...|-++|-.|- |..++.+++ +..+|+-+.+|-|+++++.+
T Consensus 30 ~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A 109 (234)
T PLN02781 30 HELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG 109 (234)
T ss_pred CHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 45788888888633 112 444455555555555578999999985 554455544 34579999999999999888
Q ss_pred hhcCC--CceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCC
Q 019623 149 EKNHP--DFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSG 221 (338)
Q Consensus 149 ~~~~P--~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~G 221 (338)
++..- +++ ..| +-...+|.+.|....++ ++ +-.+|+|++|+++.
T Consensus 110 ~~n~~~~gl~-~~i--~~~~gda~~~L~~l~~~--~~------------------------~~~fD~VfiDa~k~ 155 (234)
T PLN02781 110 LEFIKKAGVD-HKI--NFIQSDALSALDQLLNN--DP------------------------KPEFDFAFVDADKP 155 (234)
T ss_pred HHHHHHcCCC-CcE--EEEEccHHHHHHHHHhC--CC------------------------CCCCCEEEECCCHH
Confidence 76532 332 223 33456777777655432 00 12689999999873
No 7
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=92.84 E-value=0.75 Score=42.08 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=91.3
Q ss_pred cHHHHHHHHHhhccCC-CC--CCHHHHHHHHHHHhhcCCCccEEEecC--Cchhhhhh-hccCCCcEEEecCChhHHHHh
Q 019623 75 SSIITAALLHYTLTSN-ST--MTSAELTAVADALSRCSPSCNFLVFGL--THETLLWK-SLNFQGHTIFVDESEFLVQSF 148 (338)
Q Consensus 75 p~~v~~ALvHYAt~sn-~t--qt~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTVFLEEd~~~i~~~ 148 (338)
.+++++.|-+++.... .. +...+...+...|.+...|-|.|-+|- |.-++.|+ ++-.+|+-+=+|-|+++++.+
T Consensus 7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A 86 (205)
T PF01596_consen 7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIA 86 (205)
T ss_dssp STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHH
Confidence 5578899999997433 12 333444445555555577999999975 77777777 566789999999999998877
Q ss_pred hhcC--CCceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCC
Q 019623 149 EKNH--PDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRA 226 (338)
Q Consensus 149 ~~~~--P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~pea 226 (338)
++.. -+++ .+|++ ...+|.+.|.....+ . + +-.+|+|.|||.++-++
T Consensus 87 ~~~~~~ag~~-~~I~~--~~gda~~~l~~l~~~-~---------------------~----~~~fD~VFiDa~K~~y~-- 135 (205)
T PF01596_consen 87 RENFRKAGLD-DRIEV--IEGDALEVLPELAND-G---------------------E----EGQFDFVFIDADKRNYL-- 135 (205)
T ss_dssp HHHHHHTTGG-GGEEE--EES-HHHHHHHHHHT-T---------------------T----TTSEEEEEEESTGGGHH--
T ss_pred HHHHHhcCCC-CcEEE--EEeccHhhHHHHHhc-c---------------------C----CCceeEEEEcccccchh--
Confidence 7432 2332 23333 347888888766642 0 0 34699999999886443
Q ss_pred CCCchhHhhHHHHHhhccCCCCcceEEEecCCh
Q 019623 227 PGRMAPIFTASVLARSKKAGRKKTHVFVHDFNR 259 (338)
Q Consensus 227 PGRM~aIyTAavmARar~~g~~~TdVfVHDvdR 259 (338)
..|-.+ +..-|++| =+++.++-.
T Consensus 136 -----~y~~~~-~~ll~~gg----vii~DN~l~ 158 (205)
T PF01596_consen 136 -----EYFEKA-LPLLRPGG----VIIADNVLW 158 (205)
T ss_dssp -----HHHHHH-HHHEEEEE----EEEEETTTG
T ss_pred -----hHHHHH-hhhccCCe----EEEEccccc
Confidence 445443 34445443 466666654
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=92.21 E-value=1.2 Score=44.96 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=83.9
Q ss_pred cCCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCce-----eE-EeEecccccchHHHHHHHHhc
Q 019623 108 CSPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFE-----IY-DVQYTTKVEEMNPTLHAVRKQ 179 (338)
Q Consensus 108 ~raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~le-----ay-~V~Y~T~v~ea~~LL~~~r~~ 179 (338)
...|-+.||.|.|--..+=..+-+. ++-+-+|=|+.-++-+++ +|.+. ++ +=+-+-.+.++.+.|..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~---- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSS---- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHh----
Confidence 3678999999999777666666654 688889999999988885 44442 11 11222233555554431
Q ss_pred CCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhhcc---CCCCcceEEE-e
Q 019623 180 FKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKK---AGRKKTHVFV-H 255 (338)
Q Consensus 180 ~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARar~---~g~~~TdVfV-H 255 (338)
.+ -++|||++|.|....+ .....||...+...++ +| | ||| .
T Consensus 223 ----------------------~~-----~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPg-G---V~V~Q 267 (374)
T PRK01581 223 ----------------------PS-----SLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTED-G---AFVCQ 267 (374)
T ss_pred ----------------------cC-----CCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCC-c---EEEEe
Confidence 01 1699999998753322 2477888776555433 33 3 232 1
Q ss_pred --------cCChhHHHHhhhhhccccccc---cccCceeeEEeCC
Q 019623 256 --------DFNREVERVCSEEFLCEENLV---EVVDKLAHFVVEP 289 (338)
Q Consensus 256 --------DvdR~VE~~~s~EFLC~~nLv---e~~grL~HF~Ip~ 289 (338)
++-..+-+.+...|+--.... ..-|.+|=|.|.+
T Consensus 268 s~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as 312 (374)
T PRK01581 268 SNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAA 312 (374)
T ss_pred cCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEe
Confidence 111234566666676544322 2346668888854
No 9
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=91.65 E-value=1.1 Score=41.62 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=38.4
Q ss_pred CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCc
Q 019623 109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDF 155 (338)
Q Consensus 109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~l 155 (338)
+.|-+.|+.|.|--.+....+.+. .+.+.+|-|+..++.+++..|.+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~ 119 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL 119 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence 568899999999988777777775 57899999999999888766543
No 10
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=89.48 E-value=0.72 Score=42.92 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=64.9
Q ss_pred HHHhhcCCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCceeE--EeEecccccchHHHHHHHHh
Q 019623 103 DALSRCSPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFEIY--DVQYTTKVEEMNPTLHAVRK 178 (338)
Q Consensus 103 ~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~leay--~V~Y~T~v~ea~~LL~~~r~ 178 (338)
-++.. ..|-|.||.|+|--+..-..+.|. .+...+|-|+.-++-.++-+|....- +=+.+-...++.+.|+
T Consensus 70 ~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~---- 144 (246)
T PF01564_consen 70 PLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK---- 144 (246)
T ss_dssp HHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH----
T ss_pred HhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH----
Confidence 34444 579999999999999888888886 67889999999888777554432111 1111122345555554
Q ss_pred cCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhh
Q 019623 179 QFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARS 242 (338)
Q Consensus 179 ~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARa 242 (338)
.-+.+ .+|||++|.+. |..|+-. .||.-.+...
T Consensus 145 ----------------------~~~~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~ 177 (246)
T PF01564_consen 145 ----------------------ETQEE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLC 177 (246)
T ss_dssp ----------------------TSSST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHH
T ss_pred ----------------------hccCC----cccEEEEeCCC---CCCCccc--ccCHHHHHHH
Confidence 22222 79999999987 4444433 7776655444
No 11
>PLN02366 spermidine synthase
Probab=89.09 E-value=3.2 Score=40.30 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=36.7
Q ss_pred CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCc
Q 019623 109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDF 155 (338)
Q Consensus 109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~l 155 (338)
..|-+.||.|.|.-.+.-..+.|. .+-+.+|=|+.-|+-.++.+|.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~ 138 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL 138 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh
Confidence 679999999999887776666663 46678898999888888776653
No 12
>PRK00811 spermidine synthase; Provisional
Probab=89.05 E-value=2 Score=40.52 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCCccEEEecCCchhhhhhhccC-C-CcEEEecCChhHHHHhhhcCCCc
Q 019623 109 SPSCNFLVFGLTHETLLWKSLNF-Q-GHTIFVDESEFLVQSFEKNHPDF 155 (338)
Q Consensus 109 raPCNfLVFGLg~dsllW~aLN~-g-GrTVFLEEd~~~i~~~~~~~P~l 155 (338)
..|-+.||.|.|--...-..+.+ + .+-+.+|=|+.-++.+++..|.+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~ 123 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI 123 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh
Confidence 57999999999998888877887 3 47899999999999988776643
No 13
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=86.91 E-value=3.7 Score=38.86 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhccCCCC--C-CHHHHHHHHHHHhhcCCCccEEEecC--Cchhhhhh-hccCCCcEEEecCChhHHHHhh
Q 019623 76 SIITAALLHYTLTSNST--M-TSAELTAVADALSRCSPSCNFLVFGL--THETLLWK-SLNFQGHTIFVDESEFLVQSFE 149 (338)
Q Consensus 76 ~~v~~ALvHYAt~sn~t--q-t~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTVFLEEd~~~i~~~~ 149 (338)
.++++.|.++|.....+ | +.++-+.+..+++ ...|-+.|-+|- |.-++.++ ++..+|+-+=+|=|+.+++.++
T Consensus 43 ~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar 121 (247)
T PLN02589 43 PESMKELRELTAKHPWNIMTTSADEGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL 121 (247)
T ss_pred CHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence 35688889998744333 3 3555555555555 477999999985 55555443 3456899999999999988776
Q ss_pred hcC--CCceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCC
Q 019623 150 KNH--PDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFP 224 (338)
Q Consensus 150 ~~~--P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~p 224 (338)
+.. -++. ..|.+ ...+|.+.|....++ .-|+-.+|+|.|||-++-++
T Consensus 122 ~~~~~ag~~-~~I~~--~~G~a~e~L~~l~~~-------------------------~~~~~~fD~iFiDadK~~Y~ 170 (247)
T PLN02589 122 PVIQKAGVA-HKIDF--REGPALPVLDQMIED-------------------------GKYHGTFDFIFVDADKDNYI 170 (247)
T ss_pred HHHHHCCCC-CceEE--EeccHHHHHHHHHhc-------------------------cccCCcccEEEecCCHHHhH
Confidence 443 2332 45543 346777777755531 01234599999998875544
No 14
>PRK04457 spermidine synthase; Provisional
Probab=86.03 E-value=8.1 Score=36.21 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=36.8
Q ss_pred CCCccEEEecCCchhhh--hhhccCCCcEEEecCChhHHHHhhhcC
Q 019623 109 SPSCNFLVFGLTHETLL--WKSLNFQGHTIFVDESEFLVQSFEKNH 152 (338)
Q Consensus 109 raPCNfLVFGLg~dsll--W~aLN~gGrTVFLEEd~~~i~~~~~~~ 152 (338)
..|-++|+.|+|.-++. |....++.+-+-+|=||..++.+++.+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f 110 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF 110 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc
Confidence 46889999999888764 666777889999999999999888764
No 15
>PRK03612 spermidine synthase; Provisional
Probab=83.82 E-value=5.6 Score=41.00 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=36.0
Q ss_pred CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhh
Q 019623 109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEK 150 (338)
Q Consensus 109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~ 150 (338)
+.|-+.|+.|.|--...-..+.|+ .+-+.+|=|+.-++..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART 339 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh
Confidence 679999999999888776667775 489999999999999887
No 16
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=69.85 E-value=5 Score=31.08 Aligned_cols=14 Identities=21% Similarity=0.505 Sum_probs=12.0
Q ss_pred ccEEEEcCCCCCCC
Q 019623 211 WDVVLVDGPSGYFP 224 (338)
Q Consensus 211 WDVImVDgP~Gy~p 224 (338)
+|+|+||.|.++.+
T Consensus 40 ~d~viiD~p~~~~~ 53 (104)
T cd02042 40 YDYIIIDTPPSLGL 53 (104)
T ss_pred CCEEEEeCcCCCCH
Confidence 79999999997754
No 17
>PF10718 Ycf34: Hypothetical chloroplast protein Ycf34; InterPro: IPR019656 This entry represents Ycf34, a protein encoded in algal genomes and additionally found in cyanobacteria. The function is not known. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=67.44 E-value=2 Score=35.18 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=22.5
Q ss_pred ccccccCCCcccccccccEEEEcCCCCCCCCCCCC
Q 019623 195 CKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGR 229 (338)
Q Consensus 195 CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGR 229 (338)
=..-|++|++..|++||||+=-+ =|-+-|||
T Consensus 41 I~VnI~~~~~~~~~~EWDVv~C~----SF~ee~Gk 71 (77)
T PF10718_consen 41 IHVNIRSLKNGEIEMEWDVVGCL----SFVEEPGK 71 (77)
T ss_pred EEEEEEeCCCCcEEEEEEecccc----cchhcCCc
Confidence 34668999999999999997432 24455565
No 18
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=61.54 E-value=2.2 Score=42.00 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=20.0
Q ss_pred ccccCCCcccccccccEEEEc-CCCCC
Q 019623 197 LAINDMPNHVYDMDWDVVLVD-GPSGY 222 (338)
Q Consensus 197 LAL~~LP~evYe~~WDVImVD-gP~Gy 222 (338)
+++.-+=..+.+-+||+|+|| +|+|.
T Consensus 112 ~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 112 LALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 455555566778889999999 67776
No 19
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=50.42 E-value=1e+02 Score=24.16 Aligned_cols=79 Identities=13% Similarity=0.267 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcCCCccEEEecCCchhhhhhhc-----cCCCcEEEecCChhHHHHhhhcCCCceeEEeEecccccchHH
Q 019623 97 ELTAVADALSRCSPSCNFLVFGLTHETLLWKSL-----NFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNP 171 (338)
Q Consensus 97 Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aL-----N~gGrTVFLEEd~~~i~~~~~~~P~leay~V~Y~T~v~ea~~ 171 (338)
+|..+++.|.++ .+++|||-|+.......+ ..|-...++.+...+........++--.--+...-.-.+.-+
T Consensus 2 ~i~~~~~~i~~~---~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~ 78 (139)
T cd05013 2 ALEKAVDLLAKA---RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVE 78 (139)
T ss_pred HHHHHHHHHHhC---CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHH
Confidence 577788888773 579999999866544422 235555666555555544443445444444554444455666
Q ss_pred HHHHHHh
Q 019623 172 TLHAVRK 178 (338)
Q Consensus 172 LL~~~r~ 178 (338)
+++.+|+
T Consensus 79 ~~~~a~~ 85 (139)
T cd05013 79 AAEIAKE 85 (139)
T ss_pred HHHHHHH
Confidence 6666665
No 20
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=49.87 E-value=72 Score=28.04 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=45.0
Q ss_pred hhccCCCCCCHHHHHHHH-HHHhhcCCCccEEEecCCchhh--hhhh-ccCCCcEEEecCChhHHHHhhhc
Q 019623 85 YTLTSNSTMTSAELTAVA-DALSRCSPSCNFLVFGLTHETL--LWKS-LNFQGHTIFVDESEFLVQSFEKN 151 (338)
Q Consensus 85 YAt~sn~tqt~~Ei~~~~-~vL~~~raPCNfLVFGLg~dsl--lW~a-LN~gGrTVFLEEd~~~i~~~~~~ 151 (338)
|....+.+||.+|++.+. .-+ ..++...+|.+|-|.-.+ .++. +..+|+-+-+|-++..++.++++
T Consensus 15 ~~~~~~~~~t~~~~r~~~l~~l-~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 15 FERDEEIPMTKEEIRALALSKL-RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred HccCCCCCCCHHHHHHHHHHHc-CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 343235669999999775 233 235667899999976544 3332 34567888899999998877654
No 21
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=49.32 E-value=2e+02 Score=27.32 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=79.7
Q ss_pred CcHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCCCccEEEecCCc-hhhhhhhcc--CCCcEEEecCChhHHHHhhh
Q 019623 74 SSSIITAALLHYTLTSNSTMTSAELTAVADALSRCSPSCNFLVFGLTH-ETLLWKSLN--FQGHTIFVDESEFLVQSFEK 150 (338)
Q Consensus 74 lp~~v~~ALvHYAt~sn~tqt~~Ei~~~~~vL~~~raPCNfLVFGLg~-dsllW~aLN--~gGrTVFLEEd~~~i~~~~~ 150 (338)
-++.+++-+=.+|-..+.++-..|-......|.+.+.|-+.|=+|-+- =|.+|.+.. +.||-+=+|=|+++++.+++
T Consensus 23 ~~~~~~~~~~e~a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~ 102 (219)
T COG4122 23 EPPALLAELEEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE 102 (219)
T ss_pred CCchHHHHHHHHhHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHH
Confidence 355667777777876677744477788888888889999999997532 356676655 46899999999999887775
Q ss_pred cCCCceeEEeEeccc--c-cchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCC
Q 019623 151 NHPDFEIYDVQYTTK--V-EEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPR 225 (338)
Q Consensus 151 ~~P~leay~V~Y~T~--v-~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~pe 225 (338)
..-. +.|.=+.. + .+|-+.|+. ...-.+|+|.||+=++.+|+
T Consensus 103 n~~~---ag~~~~i~~~~~gdal~~l~~------------------------------~~~~~fDliFIDadK~~yp~ 147 (219)
T COG4122 103 NLAE---AGVDDRIELLLGGDALDVLSR------------------------------LLDGSFDLVFIDADKADYPE 147 (219)
T ss_pred HHHH---cCCcceEEEEecCcHHHHHHh------------------------------ccCCCccEEEEeCChhhCHH
Confidence 4321 11111111 1 244444442 22346899999999988883
No 22
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=45.23 E-value=89 Score=28.22 Aligned_cols=61 Identities=26% Similarity=0.245 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCCCccEEEecCCchhhhh--hhccCCCcEEEecCChhHHHHhhhcCCCc
Q 019623 95 SAELTAVADALSRCSPSCNFLVFGLTHETLLW--KSLNFQGHTIFVDESEFLVQSFEKNHPDF 155 (338)
Q Consensus 95 ~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW--~aLN~gGrTVFLEEd~~~i~~~~~~~P~l 155 (338)
.+++..+.++|.++..+..+|-+|=|.-..+- ....+++.-+=+|-++..++.++++.|++
T Consensus 28 ~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~ 90 (204)
T TIGR03587 28 AAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNI 90 (204)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCC
Confidence 55778888888887778889999887765443 33334667777899999999988776654
No 23
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=44.23 E-value=7.2 Score=34.96 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=15.8
Q ss_pred ccCCCcccccccccEEEEcCCCC
Q 019623 199 INDMPNHVYDMDWDVVLVDGPSG 221 (338)
Q Consensus 199 L~~LP~evYe~~WDVImVDgP~G 221 (338)
+..|=+.+-+.+||+|+||+|.+
T Consensus 102 ~~~l~~~l~~~~yD~IIiD~pp~ 124 (217)
T cd02035 102 LLAVFREFSEGLYDVIVFDTAPT 124 (217)
T ss_pred HHHHHHHHhcCCCCEEEECCCCc
Confidence 44444444444699999999985
No 24
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=43.78 E-value=1.4e+02 Score=25.66 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHhhcCCCccEEEecCCchhhh----hhhccCCCcEEEecCChhHHHHhhhcCCCceeEEeEecccccc
Q 019623 93 MTSAELTAVADALSRCSPSCNFLVFGLTHETLL----WKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEE 168 (338)
Q Consensus 93 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsll----W~aLN~gGrTVFLEEd~~~i~~~~~~~P~leay~V~Y~T~v~e 168 (338)
+..+++..+.+.|.++ -++.|||.|.-..+ ..-|+.-|..++.-++.. .....++=-+--+.|.-.-++
T Consensus 15 l~~~~~~~~~~~l~~a---~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~----~~~~~~~Dv~I~iS~sG~t~~ 87 (179)
T TIGR03127 15 IDEEELDKLADKIIKA---KRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT----TPSIKKGDLLIAISGSGETES 87 (179)
T ss_pred CCHHHHHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc----cCCCCCCCEEEEEeCCCCcHH
Confidence 7788999999999763 38999999976543 333566666666554431 112223333455666666666
Q ss_pred hHHHHHHHHh
Q 019623 169 MNPTLHAVRK 178 (338)
Q Consensus 169 a~~LL~~~r~ 178 (338)
.-++++.+|+
T Consensus 88 ~i~~~~~ak~ 97 (179)
T TIGR03127 88 LVTVAKKAKE 97 (179)
T ss_pred HHHHHHHHHH
Confidence 7777777775
No 25
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=41.99 E-value=7.9 Score=35.82 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.9
Q ss_pred cccccEEEEcCCC
Q 019623 208 DMDWDVVLVDGPS 220 (338)
Q Consensus 208 e~~WDVImVDgP~ 220 (338)
+.+||+|+||+|.
T Consensus 122 ~~~yD~VVvDtpP 134 (254)
T cd00550 122 EAEYDVVVFDTAP 134 (254)
T ss_pred cCCCCEEEECCCC
Confidence 4489999999876
No 26
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=41.96 E-value=1.4e+02 Score=28.23 Aligned_cols=80 Identities=9% Similarity=0.152 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCCccEEEecCCchhh----hhhhccCCCcEEEecCChhHHH-HhhhcCCCceeEEeEecccccchHH
Q 019623 97 ELTAVADALSRCSPSCNFLVFGLTHETL----LWKSLNFQGHTIFVDESEFLVQ-SFEKNHPDFEIYDVQYTTKVEEMNP 171 (338)
Q Consensus 97 Ei~~~~~vL~~~raPCNfLVFGLg~dsl----lW~aLN~gGrTVFLEEd~~~i~-~~~~~~P~leay~V~Y~T~v~ea~~ 171 (338)
+|..+.+.|.+ +.-++.+||.|.... +|..|++-|..+++.++..... ....-.++=-.--+.|.-.-++.-+
T Consensus 35 ~l~~~~~~l~~--a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~~~~~ 112 (326)
T PRK10892 35 DFTLACEKMFW--CKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILA 112 (326)
T ss_pred HHHHHHHHHHh--cCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCCCHHHHH
Confidence 78888888865 334799999997765 5778899999998865554432 2222233334566777777777777
Q ss_pred HHHHHHh
Q 019623 172 TLHAVRK 178 (338)
Q Consensus 172 LL~~~r~ 178 (338)
+++.+|+
T Consensus 113 ~~~~ak~ 119 (326)
T PRK10892 113 LIPVLKR 119 (326)
T ss_pred HHHHHHH
Confidence 8887876
No 27
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=41.91 E-value=29 Score=26.96 Aligned_cols=42 Identities=24% Similarity=0.144 Sum_probs=34.0
Q ss_pred cEEEecCCchhhhhhhccCC-CcEEEecCChhHHHHhhhcCCC
Q 019623 113 NFLVFGLTHETLLWKSLNFQ-GHTIFVDESEFLVQSFEKNHPD 154 (338)
Q Consensus 113 NfLVFGLg~dsllW~aLN~g-GrTVFLEEd~~~i~~~~~~~P~ 154 (338)
.+|-.|-|--..+..++..+ .+.+-+|=|+..++..+.+.+.
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH
Confidence 46777888888888888888 8888899999998888865544
No 28
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=39.43 E-value=16 Score=34.94 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=13.8
Q ss_pred ccccEEEEcCCCCCCC
Q 019623 209 MDWDVVLVDGPSGYFP 224 (338)
Q Consensus 209 ~~WDVImVDgP~Gy~p 224 (338)
-.||||+||.|.|..|
T Consensus 116 ~~~~~iliD~P~g~~~ 131 (243)
T PF06564_consen 116 GPYDWILIDTPPGPSP 131 (243)
T ss_pred CCCCEEEEeCCCCCcH
Confidence 4699999999998765
No 29
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=37.98 E-value=19 Score=30.50 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=13.7
Q ss_pred ccccEEEEcCCCCCCC
Q 019623 209 MDWDVVLVDGPSGYFP 224 (338)
Q Consensus 209 ~~WDVImVDgP~Gy~p 224 (338)
-++|+|+||.|.|+.+
T Consensus 91 ~~~d~viiDtpp~~~~ 106 (179)
T cd03110 91 EGAELIIIDGPPGIGC 106 (179)
T ss_pred cCCCEEEEECcCCCcH
Confidence 4789999999999864
No 30
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=37.92 E-value=30 Score=25.75 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=35.3
Q ss_pred cccEEEEcCCCCCCCCCCCCchhHhhHHHHHhhccCCCCcceEEEecCChhHHHHh
Q 019623 210 DWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVC 265 (338)
Q Consensus 210 ~WDVImVDgP~Gy~peaPGRM~aIyTAavmARar~~g~~~TdVfVHDvdR~VE~~~ 265 (338)
.|-|-.-.+-+ -.-..+-+-.||=-|-.||+.. +.+.|+||+-|..|++..
T Consensus 10 ~W~v~~eg~~r-a~~~~~Tk~eAi~~Ar~~a~~~----~~~el~Ih~~dG~i~~~~ 60 (62)
T PF09954_consen 10 GWAVKKEGAKR-ASKTFDTKAEAIEAARELAKNQ----GGGELIIHGRDGKIREER 60 (62)
T ss_pred CceEEeCCCcc-cccccCcHHHHHHHHHHHHHhC----CCcEEEEECCCCeEEEee
Confidence 37666553321 1344456778998898898763 358999999999988654
No 31
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=36.90 E-value=20 Score=34.85 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=17.1
Q ss_pred cCCCcccccccccEEEEcC-----CCCCC
Q 019623 200 NDMPNHVYDMDWDVVLVDG-----PSGYF 223 (338)
Q Consensus 200 ~~LP~evYe~~WDVImVDg-----P~Gy~ 223 (338)
+..|.|=.+..=||||||| |+|+.
T Consensus 105 ~~v~~erh~fr~dvilvDGnG~lHprGfG 133 (261)
T KOG4417|consen 105 KSVITERHEFRPDVILVDGNGELHPRGFG 133 (261)
T ss_pred HhcccccCCccccEEEEcCCceEcccccc
Confidence 4455555566689999998 77774
No 32
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=36.54 E-value=19 Score=33.99 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=18.6
Q ss_pred ccccEEEEc-CCCCC---CCCCCCCchhHh
Q 019623 209 MDWDVVLVD-GPSGY---FPRAPGRMAPIF 234 (338)
Q Consensus 209 ~~WDVImVD-gP~Gy---~peaPGRM~aIy 234 (338)
-+||+|+|| +|+|. +=+.|.+|....
T Consensus 111 ~~yD~iVvDtaPtghtLrlL~lP~~l~~~l 140 (284)
T TIGR00345 111 NEFDVVIFDTAPTGHTLRLLQLPEVLSSFL 140 (284)
T ss_pred ccCCEEEECCCChHHHHHHHhhHHHHHHHH
Confidence 479999999 56676 345677776544
No 33
>PF13479 AAA_24: AAA domain
Probab=35.70 E-value=46 Score=29.89 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=24.6
Q ss_pred CCccEEEe---cCCchhhhhhhccCCCcEEEecCChh
Q 019623 110 PSCNFLVF---GLTHETLLWKSLNFQGHTIFVDESEF 143 (338)
Q Consensus 110 aPCNfLVF---GLg~dsllW~aLN~gGrTVFLEEd~~ 143 (338)
.|-++||+ |.|.-++.... ++++||+=+..
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g 34 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFIDTENG 34 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCC
Confidence 47789999 57888888777 99999987666
No 34
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=35.12 E-value=52 Score=27.46 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=12.0
Q ss_pred ccEEEEcCCCCCCC
Q 019623 211 WDVVLVDGPSGYFP 224 (338)
Q Consensus 211 WDVImVDgP~Gy~p 224 (338)
.|+|+||.|.|...
T Consensus 45 yd~VIiD~p~~~~~ 58 (139)
T cd02038 45 YDYIIIDTGAGISD 58 (139)
T ss_pred CCEEEEECCCCCCH
Confidence 89999999988654
No 35
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=35.07 E-value=1.5e+02 Score=30.03 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=55.8
Q ss_pred HHHhhcCCCccEEEecCCchhhhhhhccCCC-cEEEecCChhHHHHhhhcC--CCceeEEeEecccccchHHHHHHHHhc
Q 019623 103 DALSRCSPSCNFLVFGLTHETLLWKSLNFQG-HTIFVDESEFLVQSFEKNH--PDFEIYDVQYTTKVEEMNPTLHAVRKQ 179 (338)
Q Consensus 103 ~vL~~~raPCNfLVFGLg~dsllW~aLN~gG-rTVFLEEd~~~i~~~~~~~--P~leay~V~Y~T~v~ea~~LL~~~r~~ 179 (338)
..++++....++|=.|=|.-.....++..|. +.+.+|-|+..++.++++. ++++.-. .+--..++.+.|......
T Consensus 213 ~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~--v~~i~~D~~~~l~~~~~~ 290 (396)
T PRK15128 213 LATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSK--AEFVRDDVFKLLRTYRDR 290 (396)
T ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCc--EEEEEccHHHHHHHHHhc
Confidence 3344444578899887777776666665554 7999999999999887653 3342111 122334666666533310
Q ss_pred CCCCCccccccccccccccccCCCcccccccccEEEEcCCC
Q 019623 180 FKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPS 220 (338)
Q Consensus 180 ~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~ 220 (338)
.-.+|+|++|-|.
T Consensus 291 ----------------------------~~~fDlVilDPP~ 303 (396)
T PRK15128 291 ----------------------------GEKFDVIVMDPPK 303 (396)
T ss_pred ----------------------------CCCCCEEEECCCC
Confidence 1158999999995
No 36
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=34.71 E-value=2.3e+02 Score=27.39 Aligned_cols=119 Identities=9% Similarity=-0.010 Sum_probs=67.4
Q ss_pred CCCccEEEecCCchhhhhhhccCCCcEEEecC--C------hhHHHHhhhc-----CCCceeEEeEe----cccccchHH
Q 019623 109 SPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE--S------EFLVQSFEKN-----HPDFEIYDVQY----TTKVEEMNP 171 (338)
Q Consensus 109 raPCNfLVFGLg~dsllW~aLN~gGrTVFLEE--d------~~~i~~~~~~-----~P~leay~V~Y----~T~v~ea~~ 171 (338)
+.-..+||--.+|-+..+.+...|.+.++++- + .+.+...-.+ +|....--+.+ +-.+.+.++
T Consensus 100 ~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~ 179 (387)
T PRK09331 100 KKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKK 179 (387)
T ss_pred CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHH
Confidence 34567888888888887776677888888764 2 2333322221 24444444333 234566777
Q ss_pred HHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHH
Q 019623 172 TLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTAS 237 (338)
Q Consensus 172 LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAa 237 (338)
+.+.+|+. .+ +.--+.--++..+|-.+-+..=|+++..+=+... +|+|++-|+...
T Consensus 180 I~~la~~~---g~-----~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~--~~~~~G~l~~~~ 235 (387)
T PRK09331 180 VAKVAHEY---GI-----PFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMA--ASAPSGVLATTE 235 (387)
T ss_pred HHHHHHHc---CC-----EEEEECCcccCCcCCCHHHcCCCEEEeeCccccc--CCCCEEEEEECH
Confidence 77766652 11 2233333344444544433223888888766443 788998887643
No 37
>PHA02663 hypothetical protein; Provisional
Probab=34.23 E-value=29 Score=31.66 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=18.5
Q ss_pred CCCCCCc-hhHhhHHHHHhhccCC
Q 019623 224 PRAPGRM-APIFTASVLARSKKAG 246 (338)
Q Consensus 224 peaPGRM-~aIyTAavmARar~~g 246 (338)
|.+|||| .||=-.|.|-|--..|
T Consensus 82 ptspgrmvtavelcaqmgr~wtr~ 105 (172)
T PHA02663 82 PTSPGRMVTAVELCAQMGRLWTRG 105 (172)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhh
Confidence 6799999 8898899999864333
No 38
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=32.41 E-value=29 Score=34.73 Aligned_cols=72 Identities=21% Similarity=0.470 Sum_probs=44.7
Q ss_pred cccccc---cEEEEcCCCCCCCCCCCCch--hHhhHHHHHhhccCCCCcceEEEecCChhHHHHhhhhhccccccccc--
Q 019623 206 VYDMDW---DVVLVDGPSGYFPRAPGRMA--PIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEV-- 278 (338)
Q Consensus 206 vYe~~W---DVImVDgP~Gy~peaPGRM~--aIyTAavmARar~~g~~~TdVfVHDvdR~VE~~~s~EFLC~~nLve~-- 278 (338)
+=+++| |+++||.|.|-..|==.=+. .+.+.||+-- ..-+|-+-||.|++. +|++.-+.-
T Consensus 149 lk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVT------TPQ~vAl~Dv~K~i~-------fc~K~~I~ilG 215 (300)
T KOG3022|consen 149 LKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVT------TPQEVALQDVRKEID-------FCRKAGIPILG 215 (300)
T ss_pred HhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEe------CchhhhhHHHHhhhh-------hhhhcCCceEE
Confidence 446788 99999999997764211110 0002222221 234688899999998 788877764
Q ss_pred -cCceeeEEeCCC
Q 019623 279 -VDKLAHFVVEPM 290 (338)
Q Consensus 279 -~grL~HF~Ip~~ 290 (338)
+-+.-+|+-|.-
T Consensus 216 vVENMs~f~Cp~C 228 (300)
T KOG3022|consen 216 VVENMSGFVCPKC 228 (300)
T ss_pred EEeccccccCCCC
Confidence 445567777543
No 39
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=32.15 E-value=25 Score=33.92 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=16.8
Q ss_pred cccccEEEEcCC-CCC---CCCCCCCchhHh
Q 019623 208 DMDWDVVLVDGP-SGY---FPRAPGRMAPIF 234 (338)
Q Consensus 208 e~~WDVImVDgP-~Gy---~peaPGRM~aIy 234 (338)
+-+||+|+||+| +|. .-+.|-+|....
T Consensus 124 ~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l 154 (305)
T PF02374_consen 124 SGEYDLIVVDTPPTGHTLRLLSLPERLRWWL 154 (305)
T ss_dssp HCSTSEEEEESSSSHHHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEECCCCcHHHHHHHhHHHHHHHHH
Confidence 579999999965 443 234455554333
No 40
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.14 E-value=26 Score=31.56 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=12.3
Q ss_pred cccccEEEEcCCCCC
Q 019623 208 DMDWDVVLVDGPSGY 222 (338)
Q Consensus 208 e~~WDVImVDgP~Gy 222 (338)
.-+||+|+||.|.+.
T Consensus 117 ~~~yD~iiID~pp~l 131 (259)
T COG1192 117 KDDYDYIIIDTPPSL 131 (259)
T ss_pred ccCCCEEEECCCCch
Confidence 347999999999854
No 41
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=31.28 E-value=2.2e+02 Score=22.48 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcCCCccEEEecCCchhhhhhhccCCCcEEEecCChhHHHHhhhcCCCceeEEeEecccccchHHHHHHH
Q 019623 97 ELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAV 176 (338)
Q Consensus 97 Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTVFLEEd~~~i~~~~~~~P~leay~V~Y~T~v~ea~~LL~~~ 176 (338)
-+..++.+|++ .-++.-++|.--+. +++++.+++..|++=...+.|.....++.++++..
T Consensus 16 Gl~~la~~l~~--~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~ 75 (121)
T PF02310_consen 16 GLLYLAAYLRK--AGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKRLARAI 75 (121)
T ss_dssp HHHHHHHHHHH--TTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHH
Confidence 46677777766 34555555442211 77888999999999999998999999999999987
Q ss_pred Hh
Q 019623 177 RK 178 (338)
Q Consensus 177 r~ 178 (338)
|+
T Consensus 76 k~ 77 (121)
T PF02310_consen 76 KE 77 (121)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 42
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.20 E-value=16 Score=34.57 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=16.6
Q ss_pred ccCCCcccccccccEEEEcCCCCC
Q 019623 199 INDMPNHVYDMDWDVVLVDGPSGY 222 (338)
Q Consensus 199 L~~LP~evYe~~WDVImVDgP~Gy 222 (338)
++.|=.++..-+.|+|+||+|.|-
T Consensus 155 ~~qll~~~~~~~~D~vIID~PP~~ 178 (265)
T COG0489 155 MLQLLEDVLWGEYDYVIIDTPPGT 178 (265)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCc
Confidence 344444555556689999999974
No 43
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=30.15 E-value=1.8e+02 Score=22.28 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=36.7
Q ss_pred CCHHHHHH-HHHHHhhcCCCccEEEecCCchhhhhhhccC--CCcEEEecCChhHHHHhhh
Q 019623 93 MTSAELTA-VADALSRCSPSCNFLVFGLTHETLLWKSLNF--QGHTIFVDESEFLVQSFEK 150 (338)
Q Consensus 93 qt~~Ei~~-~~~vL~~~raPCNfLVFGLg~dsllW~aLN~--gGrTVFLEEd~~~i~~~~~ 150 (338)
|+..|+.. +...+. .+..-++|-+|-|.-...+...+. +++-+-+|-++..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 61 (124)
T TIGR02469 2 MTKREVRALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER 61 (124)
T ss_pred CchHHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH
Confidence 45666555 333332 233457999999888877766553 5677778877777766653
No 44
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=30.14 E-value=30 Score=30.47 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.2
Q ss_pred ccccEEEEcCCCCCCCC
Q 019623 209 MDWDVVLVDGPSGYFPR 225 (338)
Q Consensus 209 ~~WDVImVDgP~Gy~pe 225 (338)
-..|+|+||+|.|+.+.
T Consensus 107 ~~yD~VIiD~p~~~~~~ 123 (251)
T TIGR01969 107 DDTDFLLIDAPAGLERD 123 (251)
T ss_pred hhCCEEEEeCCCccCHH
Confidence 36899999999998653
No 45
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=28.71 E-value=3.4e+02 Score=25.24 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=52.3
Q ss_pred CCCCCcHHHHHHHHHhhccCCCC-CC--HHHH-HHHHHHHhhcCCCccEEEecCCchh---hhhhhccCCCcEEEecCCh
Q 019623 70 SSSSSSSIITAALLHYTLTSNST-MT--SAEL-TAVADALSRCSPSCNFLVFGLTHET---LLWKSLNFQGHTIFVDESE 142 (338)
Q Consensus 70 s~~~lp~~v~~ALvHYAt~sn~t-qt--~~Ei-~~~~~vL~~~raPCNfLVFGLg~ds---llW~aLN~gGrTVFLEEd~ 142 (338)
++.++|+.|.+|+..+-...... .. .+|+ ..+++.+.. ..+=+.++.|=|.+. .++.-+++ |++|.+.+..
T Consensus 6 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~~~~~~~~~t~al~~~~~~~~~~-g~~vl~~~~~ 83 (356)
T cd06451 6 GPSNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQT-ENGLTFLLSGSGTGAMEAALSNLLEP-GDKVLVGVNG 83 (356)
T ss_pred CCcCCCHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHhcC-CCCCEEEEecCcHHHHHHHHHHhCCC-CCEEEEecCC
Confidence 45789999999997653211111 11 2333 334444432 333446666766665 34444555 6778776543
Q ss_pred h----HHHHhhhcCCCceeEEeEecccccchHHHHHHHHh
Q 019623 143 F----LVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRK 178 (338)
Q Consensus 143 ~----~i~~~~~~~P~leay~V~Y~T~v~ea~~LL~~~r~ 178 (338)
. |...++...-.+....+.- +.--+.++|.+..++
T Consensus 84 ~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~i~~ 122 (356)
T cd06451 84 VFGDRWADMAERYGADVDVVEKPW-GEAVSPEEIAEALEQ 122 (356)
T ss_pred chhHHHHHHHHHhCCCeEEeecCC-CCCCCHHHHHHHHhc
Confidence 3 3344443333333333221 112234556555543
No 46
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.47 E-value=37 Score=28.70 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 019623 38 LTFFTLAFTLT 48 (338)
Q Consensus 38 ~~~ft~~~llt 48 (338)
+.+|.++|++.
T Consensus 9 i~~i~l~~~~~ 19 (130)
T PF12273_consen 9 IVAILLFLFLF 19 (130)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 47
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=27.68 E-value=38 Score=27.21 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=16.2
Q ss_pred cEEEEcCCCCCCCCCCCCchhHhhHHHHHhh
Q 019623 212 DVVLVDGPSGYFPRAPGRMAPIFTASVLARS 242 (338)
Q Consensus 212 DVImVDgP~Gy~peaPGRM~aIyTAavmARa 242 (338)
|+|+||.|.|+.. .+..+++.+
T Consensus 44 D~IIiDtpp~~~~---------~~~~~l~~a 65 (106)
T cd03111 44 DYVVVDLGRSLDE---------VSLAALDQA 65 (106)
T ss_pred CEEEEeCCCCcCH---------HHHHHHHHc
Confidence 9999999998753 455666554
No 48
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=27.21 E-value=37 Score=29.99 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=12.8
Q ss_pred cccEEEEcCCCCCCC
Q 019623 210 DWDVVLVDGPSGYFP 224 (338)
Q Consensus 210 ~WDVImVDgP~Gy~p 224 (338)
+.|+|+||+|.|...
T Consensus 111 ~~D~viiD~p~~~~~ 125 (261)
T TIGR01968 111 EFDYVIIDCPAGIES 125 (261)
T ss_pred hCCEEEEeCCCCcCH
Confidence 589999999998754
No 49
>PHA02518 ParA-like protein; Provisional
Probab=27.20 E-value=35 Score=29.25 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=11.3
Q ss_pred cccEEEEcCCCCC
Q 019623 210 DWDVVLVDGPSGY 222 (338)
Q Consensus 210 ~WDVImVDgP~Gy 222 (338)
.+|+|+||.|.|.
T Consensus 76 ~~d~viiD~p~~~ 88 (211)
T PHA02518 76 GYDYVVVDGAPQD 88 (211)
T ss_pred cCCEEEEeCCCCc
Confidence 5799999999875
No 50
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.86 E-value=68 Score=27.16 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 019623 37 FLTFFTLAFTL 47 (338)
Q Consensus 37 ~~~~ft~~~ll 47 (338)
|+.||.++|++
T Consensus 5 ~~iii~~i~l~ 15 (130)
T PF12273_consen 5 FAIIIVAILLF 15 (130)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 51
>PRK07402 precorrin-6B methylase; Provisional
Probab=26.50 E-value=1.8e+02 Score=25.32 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCCcHHHHHHHHHhhccCCCCCCHHHHHH-HHHHHhhcCCCccEEEecCCchhh--hhhhccCCCcEEEecCChhHHHHh
Q 019623 72 SSSSSIITAALLHYTLTSNSTMTSAELTA-VADALSRCSPSCNFLVFGLTHETL--LWKSLNFQGHTIFVDESEFLVQSF 148 (338)
Q Consensus 72 ~~lp~~v~~ALvHYAt~sn~tqt~~Ei~~-~~~vL~~~raPCNfLVFGLg~dsl--lW~aLN~gGrTVFLEEd~~~i~~~ 148 (338)
..||...+ +...+.++|..|++. +.+.|.- +....+|=+|=|.-.+ .++..+++++-+-+|-|+..++.+
T Consensus 8 ~~~~d~~~------~~~~~~p~t~~~v~~~l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a 80 (196)
T PRK07402 8 PGIPDELF------ERLPGIPLTKREVRLLLISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLI 80 (196)
T ss_pred CCCChHHh------ccCCCCCCCHHHHHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 46775532 332355699999996 5777753 5557788887766543 445466788988999999999888
Q ss_pred hhcC
Q 019623 149 EKNH 152 (338)
Q Consensus 149 ~~~~ 152 (338)
+++.
T Consensus 81 ~~n~ 84 (196)
T PRK07402 81 RRNC 84 (196)
T ss_pred HHHH
Confidence 7654
No 52
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.94 E-value=37 Score=28.42 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=13.0
Q ss_pred ccEEEEcCCCCCCCC
Q 019623 211 WDVVLVDGPSGYFPR 225 (338)
Q Consensus 211 WDVImVDgP~Gy~pe 225 (338)
-|+|+||+|.|....
T Consensus 95 yD~iiiD~~~~~~~~ 109 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP 109 (195)
T ss_dssp SSEEEEEECSSSSHH
T ss_pred ccceeecccccccHH
Confidence 799999999988654
No 53
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=25.77 E-value=4.5e+02 Score=22.89 Aligned_cols=132 Identities=12% Similarity=-0.052 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHhhc---CCCccEEEecC-Cch--hhhhhhccCCCcEEEecCChhHHHHhhhcCC---CceeEEeEecc
Q 019623 94 TSAELTAVADALSRC---SPSCNFLVFGL-THE--TLLWKSLNFQGHTIFVDESEFLVQSFEKNHP---DFEIYDVQYTT 164 (338)
Q Consensus 94 t~~Ei~~~~~vL~~~---raPCNfLVFGL-g~d--sllW~aLN~gGrTVFLEEd~~~i~~~~~~~P---~leay~V~Y~T 164 (338)
..+=+..+.+.|++. ..-.+.||||= |.- .........|.+.+.+.-++...+.+.+... +.+...+
T Consensus 8 a~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~---- 83 (194)
T cd01078 8 AAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAV---- 83 (194)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEe----
Confidence 334455555555421 23468999985 542 3344444555555556777766665544321 2222211
Q ss_pred cccchHHHHHHHHhcC-CCCCcccccc---c-ccc---cccc-----ccCCCcccccccccEEEEcCCCCCCCCCCCC
Q 019623 165 KVEEMNPTLHAVRKQF-KDDCRPMQNL---L-FSD---CKLA-----INDMPNHVYDMDWDVVLVDGPSGYFPRAPGR 229 (338)
Q Consensus 165 ~v~ea~~LL~~~r~~~-~~~C~p~~~l---~-~S~---CkLA-----L~~LP~evYe~~WDVImVDgP~Gy~peaPGR 229 (338)
...+.+++.+..++.. ==.|.|.+.. . ... .++. -.+...++-++..|++++|||.++.+-+.|-
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~g 161 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEGIDVPDKGVDREGKVPYGAIGVGG 161 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCcccccccCCceecCCCeEEEeeccch
Confidence 2234455545444310 0002333321 0 011 1111 1244556667899999999998885544444
No 54
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.28 E-value=72 Score=31.51 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhc
Q 019623 30 HRFYLLFFLTFFTLAFTLTFFTTA 53 (338)
Q Consensus 30 ~R~wll~~~~~ft~~~llt~~~~~ 53 (338)
+|-|||+|+|+++++.++.+..+.
T Consensus 251 ~ra~fli~lgvLafi~~i~lM~rl 274 (299)
T KOG3970|consen 251 KRALFLIFLGVLAFITIIMLMKRL 274 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999998888888876665
No 55
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=24.58 E-value=68 Score=32.01 Aligned_cols=32 Identities=28% Similarity=0.710 Sum_probs=27.6
Q ss_pred hhhhccCCCcEEEe------cCChhHHHHhhhcCCCce
Q 019623 125 LWKSLNFQGHTIFV------DESEFLVQSFEKNHPDFE 156 (338)
Q Consensus 125 lW~aLN~gGrTVFL------EEd~~~i~~~~~~~P~le 156 (338)
.|..|++||+-||- |||+.-|+.+.++||+.+
T Consensus 354 a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 354 IWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred HHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCe
Confidence 47779999998765 899999999999999864
No 56
>PRK02947 hypothetical protein; Provisional
Probab=24.37 E-value=5.9e+02 Score=23.79 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhc-CCCccEEEecCCchhhhhhhccCC-C-----cEE---------------EecCChhHHH---Hhh
Q 019623 95 SAELTAVADALSRC-SPSCNFLVFGLTHETLLWKSLNFQ-G-----HTI---------------FVDESEFLVQ---SFE 149 (338)
Q Consensus 95 ~~Ei~~~~~vL~~~-raPCNfLVFGLg~dsllW~aLN~g-G-----rTV---------------FLEEd~~~i~---~~~ 149 (338)
.++|...++.|..+ +.=-++.|||.|+....=..+-+. | +.+ ++|....+.. +..
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRY 102 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHc
Confidence 35566655555321 224589999999865532222111 1 211 2222233322 223
Q ss_pred hcCCCceeEEeEecccccchHHHHHHHHhc
Q 019623 150 KNHPDFEIYDVQYTTKVEEMNPTLHAVRKQ 179 (338)
Q Consensus 150 ~~~P~leay~V~Y~T~v~ea~~LL~~~r~~ 179 (338)
.-.|+=-..-+.|.-.-.+.-++++.+|+.
T Consensus 103 ~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~ 132 (246)
T PRK02947 103 DIRPGDVLIVVSNSGRNPVPIEMALEAKER 132 (246)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 345555666777877777777888877763
No 57
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=24.23 E-value=98 Score=27.16 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=28.1
Q ss_pred HHHHhhcCCCccEEEecCCchhhhhhhccCCCcEEEecCChhHH
Q 019623 102 ADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLV 145 (338)
Q Consensus 102 ~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTVFLEEd~~~i 145 (338)
.+.+.+....+.+++.|=|.|+..|.--++.|...|+|=|..-+
T Consensus 70 ~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v 113 (183)
T PF04072_consen 70 REFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEV 113 (183)
T ss_dssp HHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHH
T ss_pred HHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHH
Confidence 34443323345999999999999999999876777777665443
No 58
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=23.48 E-value=1.3e+02 Score=23.55 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=64.1
Q ss_pred EEEecCCchhh-hhhhccCCC-cEEEecCChhHHHHhhhcCCCceeEEeEecccccchHHHHHHHHhcCCCCCccccccc
Q 019623 114 FLVFGLTHETL-LWKSLNFQG-HTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLL 191 (338)
Q Consensus 114 fLVFGLg~dsl-lW~aLN~gG-rTVFLEEd~~~i~~~~~~~P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~ 191 (338)
++|+|.|.-.. +-..|..+| +-+.+|.|+..+..+++.. +++-|-.. .+-+ .|+.+.-+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~-~~~~-~l~~a~i~------------ 61 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDA-TDPE-VLERAGIE------------ 61 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-T-TSHH-HHHHTTGG------------
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccc-hhhh-HHhhcCcc------------
Confidence 57899986543 445677788 7999999999999999776 44444322 2222 23323211
Q ss_pred cccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhhccCCCCcceEEEecCChhHHHHhhh
Q 019623 192 FSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSE 267 (338)
Q Consensus 192 ~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARar~~g~~~TdVfVHDvdR~VE~~~s~ 267 (338)
+=|.|++..+. . ..-..++.+||..- +...|+++=.+++-++.+..
T Consensus 62 ------------------~a~~vv~~~~~---d------~~n~~~~~~~r~~~---~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 62 ------------------KADAVVILTDD---D------EENLLIALLARELN---PDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp ------------------CESEEEEESSS---H------HHHHHHHHHHHHHT---TTSEEEEEESSHHHHHHHHH
T ss_pred ------------------ccCEEEEccCC---H------HHHHHHHHHHHHHC---CCCeEEEEECCHHHHHHHHH
Confidence 11345555552 1 45566677777642 34778888888877777644
No 59
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=23.32 E-value=3.5e+02 Score=25.12 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcCCCccEEEe---cCCch-----hhhhhhccC----CC-cEEEecCChhHHHHhhhcCCCceeEEeE
Q 019623 95 SAELTAVADALSRCSPSCNFLVF---GLTHE-----TLLWKSLNF----QG-HTIFVDESEFLVQSFEKNHPDFEIYDVQ 161 (338)
Q Consensus 95 ~~Ei~~~~~vL~~~raPCNfLVF---GLg~d-----sllW~aLN~----gG-rTVFLEEd~~~i~~~~~~~P~leay~V~ 161 (338)
..|++.++.+|+++. +-.|+++ |-|-+ ++.|+-++. .| .+||..-+....+..+...+.++-|++.
T Consensus 95 ~~e~~~~~~il~~~~-~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~ 173 (222)
T cd03287 95 MVELSETSHILSNCT-SRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMS 173 (222)
T ss_pred HHHHHHHHHHHHhCC-CCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEE
Confidence 369999999998744 4455554 33433 556766543 35 5555555555554444434578999999
Q ss_pred eccc
Q 019623 162 YTTK 165 (338)
Q Consensus 162 Y~T~ 165 (338)
|...
T Consensus 174 ~~~~ 177 (222)
T cd03287 174 YLES 177 (222)
T ss_pred EEEe
Confidence 9753
No 60
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=23.19 E-value=1.8e+02 Score=22.25 Aligned_cols=41 Identities=15% Similarity=-0.012 Sum_probs=30.4
Q ss_pred ccEEEecCCchhhhhhhc--cCCCcEEEecCChhHHHHhhhcC
Q 019623 112 CNFLVFGLTHETLLWKSL--NFQGHTIFVDESEFLVQSFEKNH 152 (338)
Q Consensus 112 CNfLVFGLg~dsllW~aL--N~gGrTVFLEEd~~~i~~~~~~~ 152 (338)
-++|-.|-|.-....... .+|.+-+=+|-|+..++.++++.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 357888776655544444 48999999999999999888554
No 61
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=23.09 E-value=5.9e+02 Score=23.39 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHhhcCCCccEEEecCCchhh----hhhhccCCCcEEEecCChhH-HHHhhhcCCCceeEEeEeccccc
Q 019623 93 MTSAELTAVADALSRCSPSCNFLVFGLTHETL----LWKSLNFQGHTIFVDESEFL-VQSFEKNHPDFEIYDVQYTTKVE 167 (338)
Q Consensus 93 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsl----lW~aLN~gGrTVFLEEd~~~-i~~~~~~~P~leay~V~Y~T~v~ 167 (338)
.+.++|....+.|.+++ ++.|||.|.... ++.-|+.-|..++...|... ...+..-.++=-.--+.|.-.-.
T Consensus 113 ~~~~~l~~~~~~i~~a~---~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~ 189 (278)
T PRK11557 113 NSEEKLHECVTMLRSAR---RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERR 189 (278)
T ss_pred cCHHHHHHHHHHHhcCC---eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCH
Confidence 67889999999997633 799999997544 33445666777776655443 33444444444556677776667
Q ss_pred chHHHHHHHHh
Q 019623 168 EMNPTLHAVRK 178 (338)
Q Consensus 168 ea~~LL~~~r~ 178 (338)
+-.++++.+|+
T Consensus 190 ~~~~~~~~ak~ 200 (278)
T PRK11557 190 ELNLAADEALR 200 (278)
T ss_pred HHHHHHHHHHH
Confidence 77777777776
No 62
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=22.95 E-value=5.3e+02 Score=23.97 Aligned_cols=82 Identities=7% Similarity=0.016 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHhhcCCCccEEEecCCchhh----hhhhccC-CCcEEEecCChhHHH-HhhhcCCCceeEEeEecccc
Q 019623 93 MTSAELTAVADALSRCSPSCNFLVFGLTHETL----LWKSLNF-QGHTIFVDESEFLVQ-SFEKNHPDFEIYDVQYTTKV 166 (338)
Q Consensus 93 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsl----lW~aLN~-gGrTVFLEEd~~~i~-~~~~~~P~leay~V~Y~T~v 166 (338)
+..+++..+.+.|.+ + .+..|||.|.-.. ++.-|.. |-..+++ +|..+.. ......++=-.--+.|.-.-
T Consensus 125 l~~~~l~~~~~~i~~--A-~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~-~d~~~~~~~~~~~~~~Dl~I~iS~sG~t 200 (292)
T PRK11337 125 LDVDEFHRAARFFYQ--A-RQRDLYGAGGSAAIARDVQHKFLRIGVRCQAY-DDAHIMLMSAALLQEGDVVLVVSHSGRT 200 (292)
T ss_pred cCHHHHHHHHHHHHc--C-CeEEEEEecHHHHHHHHHHHHHhhCCCeEEEc-CCHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence 778899999999976 3 3577999997654 2333444 4444455 5555443 22222344345557777666
Q ss_pred cchHHHHHHHHh
Q 019623 167 EEMNPTLHAVRK 178 (338)
Q Consensus 167 ~ea~~LL~~~r~ 178 (338)
.+.-++++.+|+
T Consensus 201 ~~~~~~~~~ak~ 212 (292)
T PRK11337 201 SDVIEAVELAKK 212 (292)
T ss_pred HHHHHHHHHHHH
Confidence 788888888886
No 63
>PRK15482 transcriptional regulator MurR; Provisional
Probab=22.89 E-value=4.3e+02 Score=24.62 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHhhcCCCccEEEecCCchhhh----hhhccCCCcEEEecCChhHHHH-hhhcCCCceeEEeEeccccc
Q 019623 93 MTSAELTAVADALSRCSPSCNFLVFGLTHETLL----WKSLNFQGHTIFVDESEFLVQS-FEKNHPDFEIYDVQYTTKVE 167 (338)
Q Consensus 93 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsll----W~aLN~gGrTVFLEEd~~~i~~-~~~~~P~leay~V~Y~T~v~ 167 (338)
+..+++..+.+.|.+ ++ ++.|||.|.-.++ +.-|..=|..+....|...... .....++=-.--+.|.-.-.
T Consensus 120 id~~~l~~~~~~i~~--A~-~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~ 196 (285)
T PRK15482 120 FDYARLQKIIEVISK--AP-FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKK 196 (285)
T ss_pred cCHHHHHHHHHHHHh--CC-eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 678899999999976 33 6999999976554 3334455777777666554332 23334554566778887778
Q ss_pred chHHHHHHHHh
Q 019623 168 EMNPTLHAVRK 178 (338)
Q Consensus 168 ea~~LL~~~r~ 178 (338)
+.-++++.+|+
T Consensus 197 ~~~~~~~~a~~ 207 (285)
T PRK15482 197 EIVLCAEAARK 207 (285)
T ss_pred HHHHHHHHHHH
Confidence 88888888886
No 64
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=22.87 E-value=47 Score=28.13 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.6
Q ss_pred ccccEEEEcCCCCCC
Q 019623 209 MDWDVVLVDGPSGYF 223 (338)
Q Consensus 209 ~~WDVImVDgP~Gy~ 223 (338)
-+-|+|+||+|.|+.
T Consensus 66 ~~yD~VIiD~pp~~~ 80 (169)
T cd02037 66 GELDYLVIDMPPGTG 80 (169)
T ss_pred CCCCEEEEeCCCCCc
Confidence 468999999999864
No 65
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=22.22 E-value=55 Score=27.52 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=18.8
Q ss_pred ccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhh
Q 019623 209 MDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARS 242 (338)
Q Consensus 209 ~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARa 242 (338)
-+-|+|+||||.|.... |...++-+-+|+.
T Consensus 98 ~~~D~viid~~g~~~~~----~~~~~~~~dl~~~ 127 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVP----ITEEYTTADLIKL 127 (166)
T ss_pred hcCCEEEEEcCCccccC----CCCCCcHHHHHHH
Confidence 35699999999986542 2233344445554
No 66
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=21.77 E-value=27 Score=26.22 Aligned_cols=32 Identities=44% Similarity=0.717 Sum_probs=26.0
Q ss_pred cccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhh
Q 019623 208 DMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARS 242 (338)
Q Consensus 208 e~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARa 242 (338)
+-.|=.|-|+|| |...+.||.|+.||++ ||.+
T Consensus 3 ~~~~~~i~v~g~-g~~~~~~Gv~a~i~~~--La~~ 34 (65)
T PF13840_consen 3 EEDWAKISVVGP-GLRFDVPGVAAKIFSA--LAEA 34 (65)
T ss_dssp ESEEEEEEEEEE-CGTTTSHHHHHHHHHH--HHHT
T ss_pred cCCEEEEEEEcc-ccCCCcccHHHHHHHH--HHHC
Confidence 457889999999 7777899999999875 5554
No 67
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.64 E-value=50 Score=29.16 Aligned_cols=14 Identities=50% Similarity=0.669 Sum_probs=11.6
Q ss_pred ccEEEEcCCCCCCC
Q 019623 211 WDVVLVDGPSGYFP 224 (338)
Q Consensus 211 WDVImVDgP~Gy~p 224 (338)
.|+|+||.|.|..+
T Consensus 115 ~D~viiD~pp~~~~ 128 (246)
T TIGR03371 115 RDWVLIDVPRGPSP 128 (246)
T ss_pred CCEEEEECCCCchH
Confidence 49999999997644
No 68
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=21.46 E-value=1.5e+02 Score=29.03 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHhhcCCCccEE-EecCCchhhhhhhccCCC-cEEEecCChhHHHHhhhc--CCCceeEEeEecccccc
Q 019623 93 MTSAELTAVADALSRCSPSCNFL-VFGLTHETLLWKSLNFQG-HTIFVDESEFLVQSFEKN--HPDFEIYDVQYTTKVEE 168 (338)
Q Consensus 93 qt~~Ei~~~~~vL~~~raPCNfL-VFGLg~dsllW~aLN~gG-rTVFLEEd~~~i~~~~~~--~P~leay~V~Y~T~v~e 168 (338)
+--.|.+....-..+ -.++| .|--+--.-+-++ --|. +++.+|-+...++..+++ -++++.=.+. .-..+
T Consensus 109 lDqR~nR~~v~~~~~---gkrvLnlFsYTGgfsv~Aa-~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~--~~~~D 182 (286)
T PF10672_consen 109 LDQRENRKWVRKYAK---GKRVLNLFSYTGGFSVAAA-AGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHR--FIQGD 182 (286)
T ss_dssp GGGHHHHHHHHHHCT---TCEEEEET-TTTHHHHHHH-HTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEE--EEES-
T ss_pred HHHHhhHHHHHHHcC---CCceEEecCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceE--EEecC
Confidence 444555544333322 23444 4555433333333 3233 589999999999988865 3444311122 23456
Q ss_pred hHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCC
Q 019623 169 MNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPS 220 (338)
Q Consensus 169 a~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~ 220 (338)
+.+.|+.+|.. -.||||++|=|+
T Consensus 183 vf~~l~~~~~~-----------------------------~~fD~IIlDPPs 205 (286)
T PF10672_consen 183 VFKFLKRLKKG-----------------------------GRFDLIILDPPS 205 (286)
T ss_dssp HHHHHHHHHHT-----------------------------T-EEEEEE--SS
T ss_pred HHHHHHHHhcC-----------------------------CCCCEEEECCCC
Confidence 77767655531 269999999997
No 69
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.44 E-value=2e+02 Score=22.93 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=40.0
Q ss_pred cEEEecCCchhhhhhhc----cCCCcEEEecCChhHHH-HhhhcCCCceeEEeEecccccchHHHHHHHHh
Q 019623 113 NFLVFGLTHETLLWKSL----NFQGHTIFVDESEFLVQ-SFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRK 178 (338)
Q Consensus 113 NfLVFGLg~dsllW~aL----N~gGrTVFLEEd~~~i~-~~~~~~P~leay~V~Y~T~v~ea~~LL~~~r~ 178 (338)
++.|||.|....+...+ +.-|..+++.++.+.+. ......++--.--+.|.-.-++.-++++.+|+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~ 72 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKR 72 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999766544433 44455554545543332 23333444456667777777888888888886
No 70
>PRK11670 antiporter inner membrane protein; Provisional
Probab=21.33 E-value=56 Score=32.44 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=12.8
Q ss_pred cccEEEEcCCCCCCC
Q 019623 210 DWDVVLVDGPSGYFP 224 (338)
Q Consensus 210 ~WDVImVDgP~Gy~p 224 (338)
++|+|+||.|.|...
T Consensus 215 ~yDyvIID~PPg~gd 229 (369)
T PRK11670 215 DLDYLVLDMPPGTGD 229 (369)
T ss_pred cCCEEEEeCCCCCch
Confidence 689999999998654
No 71
>PRK09620 hypothetical protein; Provisional
Probab=21.16 E-value=2.7e+02 Score=25.99 Aligned_cols=75 Identities=9% Similarity=0.180 Sum_probs=52.0
Q ss_pred CcEEEecCChhHHHHhhhcCCCceeEEeEecccccc-hHHHHHHHHhcCCCCCccccccccccccccc-cCCCccccccc
Q 019623 133 GHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEE-MNPTLHAVRKQFKDDCRPMQNLLFSDCKLAI-NDMPNHVYDMD 210 (338)
Q Consensus 133 GrTVFLEEd~~~i~~~~~~~P~leay~V~Y~T~v~e-a~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL-~~LP~evYe~~ 210 (338)
..++-|+.+|+-++.+++..|+ .+-|-|--...+ -++|++.+|+. +....|-+-+ |++ .+.+..+
T Consensus 124 ~~~l~L~~~pdIl~~l~~~~~~--~~~vGFkaEt~~~~~~l~~~A~~k----------l~~k~~D~ivaN~~-~~~~g~~ 190 (229)
T PRK09620 124 APIIHFQKAPKVLKQIKQWDPE--TVLVGFKLESDVNEEELFERAKNR----------MEEAKASVMIANSP-HSLYSRG 190 (229)
T ss_pred CCeEEEEECcHHHHHHHhhCCC--CEEEEEEeccCCCHHHHHHHHHHH----------HHHcCCCEEEECCc-ccccCCC
Confidence 4589999999999999887785 567777655433 35788888753 3345555554 443 4567777
Q ss_pred ccEEEEcCCCC
Q 019623 211 WDVVLVDGPSG 221 (338)
Q Consensus 211 WDVImVDgP~G 221 (338)
--+++||. .|
T Consensus 191 ~~~~ii~~-~~ 200 (229)
T PRK09620 191 AMHYVIGQ-DG 200 (229)
T ss_pred cEEEEEeC-CC
Confidence 77888985 44
No 72
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.03 E-value=6e+02 Score=24.04 Aligned_cols=103 Identities=13% Similarity=0.235 Sum_probs=74.9
Q ss_pred CcHHHHHHHHHhhccC-CCC---CCHHHHHHHHHHHhhcCCCccEEEecCCchh-----hhhhhccCCCcEEEecCChhH
Q 019623 74 SSSIITAALLHYTLTS-NST---MTSAELTAVADALSRCSPSCNFLVFGLTHET-----LLWKSLNFQGHTIFVDESEFL 144 (338)
Q Consensus 74 lp~~v~~ALvHYAt~s-n~t---qt~~Ei~~~~~vL~~~raPCNfLVFGLg~ds-----llW~aLN~gGrTVFLEEd~~~ 144 (338)
-+..+++.++.....+ ..+ ...++|....+.|.+++ +..+||+|.-. +.|+-..-|-+.+.+++...-
T Consensus 92 ~~~~~~~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~~A~---rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~ 168 (281)
T COG1737 92 GPESILEKLLAANIAALERTLNLLDEEALERAVELLAKAR---RIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQ 168 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC---eEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHH
Confidence 3444666666655422 112 78999999999998744 78889988654 445555557777777776666
Q ss_pred HHHhhhcCCCceeEEeEecccccchHHHHHHHHhc
Q 019623 145 VQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQ 179 (338)
Q Consensus 145 i~~~~~~~P~leay~V~Y~T~v~ea~~LL~~~r~~ 179 (338)
..++..-.|+=-.--+.|+-.-+|--++++.+|+.
T Consensus 169 ~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ 203 (281)
T COG1737 169 LMQLALLTPGDVVIAISFSGYTREIVEAAELAKER 203 (281)
T ss_pred HHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 66888888988888899998888888888888873
No 73
>PF10476 DUF2448: Protein of unknown function C-terminus (DUF2448) ; InterPro: IPR018861 The proteins in the entry are restricted to chordates and their function is not known.
Probab=20.96 E-value=1.5e+02 Score=28.28 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHHHHHHHH-HHhc
Q 019623 30 HRFYLLFFLTFFTLAFTLTF-FTTA 53 (338)
Q Consensus 30 ~R~wll~~~~~ft~~~llt~-~~~~ 53 (338)
-.++||=|++|..|+||++. +...
T Consensus 22 ~qVIlLR~LAFL~CAFLla~Alyg~ 46 (204)
T PF10476_consen 22 VQVILLRFLAFLACAFLLATALYGS 46 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36777889999999999987 4444
No 74
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=20.96 E-value=5.2e+02 Score=23.09 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=40.8
Q ss_pred ccccccccEEEEcCCCCCCCC-CCCCchhHhhHHHHHhhccCCCCcceEEEecCChhHHHHhhh-hhccccccc----cc
Q 019623 205 HVYDMDWDVVLVDGPSGYFPR-APGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSE-EFLCEENLV----EV 278 (338)
Q Consensus 205 evYe~~WDVImVDgP~Gy~pe-aPGRM~aIyTAavmARar~~g~~~TdVfVHDvdR~VE~~~s~-EFLC~~nLv----e~ 278 (338)
.+-+.+=++|+||.|+..... .+..|..+.. .+-+-++.| .|=+++++-....++...+ +++|++-.. +.
T Consensus 115 ~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~--~l~~l~~~g--~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~~~~ 190 (234)
T PRK06067 115 FIKSKREDVIIIDSLTIFATYAEEDDILNFLT--EAKNLVDLG--KTILITLHPYAFSEELLSRIRSICDVYLKLRAEQI 190 (234)
T ss_pred HHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH--HHHHHHhCC--CEEEEEecCCcCCHHHHHHHHhheEEEEEEEeecc
Confidence 333345689999999955321 1222222212 121112223 4667776655544444443 788875431 11
Q ss_pred cCce-eeEEeCCC
Q 019623 279 VDKL-AHFVVEPM 290 (338)
Q Consensus 279 ~grL-~HF~Ip~~ 290 (338)
.|++ ++-.|.++
T Consensus 191 ~~~~~r~l~i~K~ 203 (234)
T PRK06067 191 GGRYVKVLEVVKL 203 (234)
T ss_pred CCEEeEEEEEEhh
Confidence 3545 44666666
No 75
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=20.81 E-value=60 Score=26.84 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=10.6
Q ss_pred cEEEEcCCCCCC
Q 019623 212 DVVLVDGPSGYF 223 (338)
Q Consensus 212 DVImVDgP~Gy~ 223 (338)
|+|+||+|.|..
T Consensus 64 d~viiD~p~~~~ 75 (179)
T cd02036 64 DYILIDSPAGIE 75 (179)
T ss_pred CEEEEECCCCCc
Confidence 999999998764
No 76
>PHA02913 TGF-beta-like protein; Provisional
Probab=20.06 E-value=54 Score=30.41 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=17.1
Q ss_pred cCCCccc-ccccccEEEEcCCCCCCC
Q 019623 200 NDMPNHV-YDMDWDVVLVDGPSGYFP 224 (338)
Q Consensus 200 ~~LP~ev-Ye~~WDVImVDgP~Gy~p 224 (338)
+.|==.+ =|+-||+|+ +|+||.+
T Consensus 80 ~~lyVDF~~dIGWdWII--APkgY~A 103 (172)
T PHA02913 80 RDFNIDFKADMGMKWIL--KPEGTHA 103 (172)
T ss_pred EEEEechhhccCcceEe--cCCCeee
Confidence 4444456 589999888 8999965
No 77
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.04 E-value=28 Score=25.86 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=16.1
Q ss_pred cccCCCcccccccccEEEEcCCCCCC
Q 019623 198 AINDMPNHVYDMDWDVVLVDGPSGYF 223 (338)
Q Consensus 198 AL~~LP~evYe~~WDVImVDgP~Gy~ 223 (338)
+|+.+.++-|+- |.||+||..+-+.
T Consensus 21 ~l~s~~~q~~~~-~eiivvddgs~d~ 45 (291)
T COG0463 21 ALESLLNQTYKD-FEIIVVDDGSTDG 45 (291)
T ss_pred HHHHHHhhhhcc-eEEEEEeCCCCCC
Confidence 344444444444 7899999887654
Done!