BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019626
         (338 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DPK|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota
 pdb|4DPK|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota
 pdb|4DPK|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota
 pdb|4DPK|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota
 pdb|4DPM|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Coa
 pdb|4DPM|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Coa
 pdb|4DPM|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Coa
 pdb|4DPM|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Coa
 pdb|4DPM|E Chain E, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Coa
 pdb|4DPM|F Chain F, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Coa
 pdb|4DPL|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Nadp
 pdb|4DPL|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Nadp
 pdb|4DPL|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Nadp
 pdb|4DPL|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
           Crenarchaeota In Complex With Nadp
          Length = 359

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 8/43 (18%)

Query: 30  PSNPILNPKLNPHIAKLTNHDRWVPNSEQNFRYVWVASICTTP 72
           P  P+L P+LNPH   L +        EQ  R  W   I TTP
Sbjct: 117 PDVPLLVPELNPHTISLID--------EQRKRREWKGFIVTTP 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,634,484
Number of Sequences: 62578
Number of extensions: 298176
Number of successful extensions: 637
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 1
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)