Query 019626
Match_columns 338
No_of_seqs 175 out of 1538
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:15:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1381 Para-hydroxybenzoate-p 100.0 6.6E-49 1.4E-53 362.3 10.4 244 87-331 53-305 (353)
2 PLN02809 4-hydroxybenzoate non 100.0 1.6E-45 3.5E-50 351.6 26.9 238 95-332 2-248 (289)
3 PRK12878 ubiA 4-hydroxybenzoat 100.0 4.3E-44 9.3E-49 345.5 28.2 250 82-332 13-274 (314)
4 PRK12873 ubiA prenyltransferas 100.0 4.7E-44 1E-48 341.5 25.8 236 96-333 4-253 (294)
5 PRK12870 ubiA 4-hydroxybenzoat 100.0 4.7E-44 1E-48 341.8 24.8 237 94-333 4-249 (290)
6 PRK12848 ubiA 4-hydroxybenzoat 100.0 1E-42 2.2E-47 331.2 26.9 236 96-334 2-246 (282)
7 TIGR01474 ubiA_proteo 4-hydrox 100.0 1.1E-42 2.4E-47 330.9 26.7 234 99-333 1-243 (281)
8 PRK12847 ubiA 4-hydroxybenzoat 100.0 5.9E-42 1.3E-46 326.3 26.9 230 97-328 5-243 (285)
9 PRK12886 ubiA prenyltransferas 100.0 1.6E-40 3.4E-45 317.7 27.5 232 96-333 5-246 (291)
10 PRK12888 ubiA prenyltransferas 100.0 1.1E-40 2.5E-45 317.6 25.4 230 98-333 1-243 (284)
11 PRK13106 ubiA prenyltransferas 100.0 1.4E-40 3.1E-45 318.9 25.2 232 95-333 11-260 (300)
12 PRK12895 ubiA prenyltransferas 100.0 1.1E-40 2.3E-45 317.7 23.9 229 98-333 2-242 (286)
13 PRK12874 ubiA prenyltransferas 100.0 1.1E-39 2.4E-44 311.8 27.4 234 95-333 4-251 (291)
14 TIGR01475 ubiA_other putative 100.0 3.2E-39 6.9E-44 307.0 25.2 230 98-333 1-242 (282)
15 PRK12876 ubiA prenyltransferas 100.0 4E-39 8.6E-44 307.8 25.1 227 97-327 2-251 (300)
16 COG0382 UbiA 4-hydroxybenzoate 100.0 1.9E-38 4.1E-43 302.7 24.9 236 95-333 6-251 (289)
17 PRK12869 ubiA protoheme IX far 100.0 5.9E-38 1.3E-42 298.2 28.1 227 98-331 1-240 (279)
18 PRK04375 protoheme IX farnesyl 100.0 1.7E-37 3.6E-42 297.4 27.7 225 97-327 8-245 (296)
19 TIGR01473 cyoE_ctaB protoheme 100.0 3.9E-37 8.4E-42 292.5 26.9 228 100-332 1-242 (280)
20 PRK13362 protoheme IX farnesyl 100.0 2.2E-36 4.9E-41 290.8 28.2 230 97-332 11-253 (306)
21 PRK09573 (S)-2,3-di-O-geranylg 100.0 7E-35 1.5E-39 276.9 25.2 226 98-333 2-238 (279)
22 PLN02776 prenyltransferase 100.0 1E-34 2.2E-39 281.6 26.4 220 108-330 1-233 (341)
23 COG0109 CyoE Polyprenyltransfe 100.0 7.7E-36 1.7E-40 282.3 18.1 231 96-332 15-258 (304)
24 PRK12884 ubiA prenyltransferas 100.0 1.1E-33 2.4E-38 268.2 25.6 226 97-332 2-238 (279)
25 PRK12882 ubiA prenyltransferas 100.0 6.5E-33 1.4E-37 262.9 24.4 227 98-332 3-240 (276)
26 PRK12871 ubiA prenyltransferas 100.0 6.4E-31 1.4E-35 252.0 27.3 228 97-331 3-256 (297)
27 PRK12392 bacteriochlorophyll c 100.0 1.1E-30 2.4E-35 253.7 28.3 230 96-333 9-264 (331)
28 PRK12883 ubiA prenyltransferas 100.0 6.4E-31 1.4E-35 249.4 25.9 226 98-332 2-236 (277)
29 PRK07566 bacteriochlorophyll/c 100.0 2.1E-30 4.5E-35 250.4 28.3 195 96-300 24-239 (314)
30 PRK06080 1,4-dihydroxy-2-napht 100.0 4E-30 8.7E-35 245.5 27.6 226 98-328 2-247 (293)
31 PLN00012 chlorophyll synthetas 100.0 7.8E-30 1.7E-34 251.2 29.4 216 96-323 82-324 (375)
32 TIGR01476 chlor_syn_BchG bacte 100.0 1.4E-29 3E-34 240.9 23.8 194 101-301 2-212 (283)
33 PRK12887 ubiA tocopherol phyty 100.0 3.2E-29 7E-34 241.5 24.9 227 96-329 10-265 (308)
34 TIGR02056 ChlG chlorophyll syn 100.0 1.7E-28 3.6E-33 236.3 26.2 195 96-300 13-233 (306)
35 PRK05951 ubiA prenyltransferas 100.0 2.7E-28 5.8E-33 233.9 27.2 228 97-329 2-253 (296)
36 PRK13387 1,4-dihydroxy-2-napht 100.0 9.8E-27 2.1E-31 225.1 26.6 225 98-326 2-266 (317)
37 KOG1380 Heme A farnesyltransfe 99.9 2.2E-28 4.7E-33 231.1 5.9 250 36-292 18-291 (409)
38 TIGR00751 menA 1,4-dihydroxy-2 99.9 6.1E-25 1.3E-29 209.6 25.3 200 110-311 1-226 (284)
39 PRK13595 ubiA prenyltransferas 99.9 3.8E-25 8.3E-30 210.6 22.9 202 100-311 10-231 (292)
40 PF01040 UbiA: UbiA prenyltran 99.9 1.1E-25 2.4E-30 208.4 18.3 179 116-297 3-193 (257)
41 PRK08238 hypothetical protein; 99.9 4.2E-25 9.2E-30 224.1 21.1 191 96-293 188-386 (479)
42 COG1575 MenA 1,4-dihydroxy-2-n 99.9 6.2E-24 1.3E-28 201.8 26.3 225 96-324 5-251 (303)
43 PRK07419 1,4-dihydroxy-2-napht 99.9 5.7E-24 1.2E-28 204.6 25.5 217 96-321 9-246 (304)
44 PLN02922 prenyltransferase 99.9 1.7E-23 3.7E-28 202.2 28.2 207 97-312 13-251 (315)
45 PRK13105 ubiA prenyltransferas 99.9 1.6E-23 3.5E-28 199.4 25.0 197 105-312 4-223 (282)
46 PRK12324 phosphoribose diphosp 99.9 2.3E-23 4.9E-28 199.6 25.0 173 97-273 9-182 (295)
47 TIGR02235 menA_cyano-plnt 1,4- 99.9 2.9E-23 6.2E-28 198.2 24.5 198 109-312 6-224 (285)
48 PRK12875 ubiA prenyltransferas 99.9 8.2E-23 1.8E-27 194.7 25.5 208 96-314 5-230 (282)
49 PRK12872 ubiA prenyltransferas 99.9 8.3E-23 1.8E-27 194.1 20.9 221 98-327 3-239 (285)
50 PLN02878 homogentisate phytylt 99.9 2E-22 4.3E-27 190.3 19.8 176 138-315 23-222 (280)
51 PRK13592 ubiA prenyltransferas 99.9 3.5E-22 7.5E-27 190.0 20.6 212 97-320 3-245 (299)
52 PRK13591 ubiA prenyltransferas 99.9 1.1E-19 2.4E-24 174.1 24.3 166 145-318 65-248 (307)
53 KOG4581 Predicted membrane pro 99.3 3.3E-13 7.2E-18 123.4 3.0 197 97-300 59-279 (359)
54 PRK13105 ubiA prenyltransferas 92.8 1.5 3.2E-05 42.2 11.5 60 144-207 166-225 (282)
55 PRK12875 ubiA prenyltransferas 91.7 2.7 5.8E-05 40.4 11.8 59 144-206 171-229 (282)
56 PRK12872 ubiA prenyltransferas 91.5 2.6 5.6E-05 39.9 11.5 37 144-181 167-203 (285)
57 TIGR01475 ubiA_other putative 90.8 1.8 4E-05 41.2 9.7 38 143-181 163-200 (282)
58 COG1575 MenA 1,4-dihydroxy-2-n 89.7 4.2 9E-05 39.6 11.1 30 142-171 180-209 (303)
59 PRK12847 ubiA 4-hydroxybenzoat 89.5 2.6 5.5E-05 40.3 9.5 40 142-182 169-208 (285)
60 PRK12884 ubiA prenyltransferas 89.3 4.3 9.4E-05 38.4 10.9 36 145-181 162-197 (279)
61 PRK13591 ubiA prenyltransferas 89.2 2.3 5.1E-05 41.4 9.0 25 156-181 197-221 (307)
62 PRK07419 1,4-dihydroxy-2-napht 89.0 6.1 0.00013 38.4 11.7 44 149-196 185-228 (304)
63 PRK06080 1,4-dihydroxy-2-napht 88.8 5.6 0.00012 38.0 11.3 52 143-198 173-224 (293)
64 PLN02922 prenyltransferase 88.5 4.7 0.0001 39.4 10.6 46 147-196 197-242 (315)
65 PRK12871 ubiA prenyltransferas 88.3 5.7 0.00012 38.4 11.1 39 143-182 180-218 (297)
66 PRK13387 1,4-dihydroxy-2-napht 88.0 2.6 5.7E-05 41.1 8.6 52 143-198 194-245 (317)
67 TIGR02235 menA_cyano-plnt 1,4- 86.3 11 0.00023 36.3 11.6 48 147-198 170-217 (285)
68 PRK07566 bacteriochlorophyll/c 86.0 7.8 0.00017 37.7 10.6 32 149-181 200-231 (314)
69 TIGR01474 ubiA_proteo 4-hydrox 85.0 9.3 0.0002 36.5 10.5 40 143-183 165-204 (281)
70 PLN00012 chlorophyll synthetas 84.8 13 0.00028 37.3 11.8 34 147-181 261-294 (375)
71 PRK12874 ubiA prenyltransferas 83.8 35 0.00075 32.9 13.9 38 143-181 172-209 (291)
72 PRK05951 ubiA prenyltransferas 83.7 13 0.00027 35.9 10.9 37 149-189 182-218 (296)
73 PRK12888 ubiA prenyltransferas 81.9 13 0.00029 35.6 10.2 44 136-181 158-201 (284)
74 TIGR00751 menA 1,4-dihydroxy-2 81.2 17 0.00037 34.9 10.6 47 148-198 174-220 (284)
75 PRK09573 (S)-2,3-di-O-geranylg 80.2 7.2 0.00016 37.0 7.7 37 144-181 160-196 (279)
76 PRK12887 ubiA tocopherol phyty 80.0 7.7 0.00017 37.7 7.9 37 143-180 187-223 (308)
77 PRK12882 ubiA prenyltransferas 80.0 25 0.00054 33.3 11.3 47 143-193 162-208 (276)
78 PRK12392 bacteriochlorophyll c 79.7 8.1 0.00018 38.0 8.1 38 144-182 186-223 (331)
79 TIGR02056 ChlG chlorophyll syn 79.5 8.4 0.00018 37.3 8.0 42 148-193 193-234 (306)
80 COG0382 UbiA 4-hydroxybenzoate 79.5 25 0.00055 33.5 11.2 40 140-180 169-208 (289)
81 PRK12895 ubiA prenyltransferas 79.2 33 0.00071 33.1 11.9 41 142-183 163-203 (286)
82 TIGR01476 chlor_syn_BchG bacte 78.6 9.7 0.00021 36.2 8.0 32 149-181 172-203 (283)
83 PRK12883 ubiA prenyltransferas 78.4 8 0.00017 36.6 7.4 33 148-181 164-196 (277)
84 PRK12878 ubiA 4-hydroxybenzoat 77.8 31 0.00068 33.6 11.4 45 136-182 191-235 (314)
85 PRK13106 ubiA prenyltransferas 76.0 9.3 0.0002 37.1 7.2 40 143-183 182-221 (300)
86 PRK12870 ubiA 4-hydroxybenzoat 75.8 27 0.00058 33.6 10.2 43 142-185 170-212 (290)
87 PRK12848 ubiA 4-hydroxybenzoat 73.3 31 0.00068 32.8 10.0 42 141-183 165-206 (282)
88 PRK12886 ubiA prenyltransferas 67.6 42 0.00092 32.2 9.5 40 142-182 166-205 (291)
89 PF01040 UbiA: UbiA prenyltran 67.5 38 0.00083 30.8 9.0 21 274-294 47-68 (257)
90 PRK12873 ubiA prenyltransferas 66.7 79 0.0017 30.7 11.2 37 144-181 176-212 (294)
91 PRK12869 ubiA protoheme IX far 64.2 60 0.0013 30.9 9.8 21 274-294 60-81 (279)
92 PRK04375 protoheme IX farnesyl 57.7 1.5E+02 0.0033 28.4 11.4 38 143-181 172-209 (296)
93 PLN02809 4-hydroxybenzoate non 57.4 1.4E+02 0.0031 28.7 11.1 39 143-182 171-209 (289)
94 COG4147 DhlC Predicted symport 51.1 24 0.00051 36.7 4.7 89 142-239 357-453 (529)
95 TIGR01473 cyoE_ctaB protoheme 48.1 1.9E+02 0.0041 27.3 10.3 23 158-181 178-200 (280)
96 PRK12876 ubiA prenyltransferas 44.1 2.8E+02 0.006 27.0 10.8 34 149-183 183-216 (300)
97 PLN02878 homogentisate phytylt 42.2 1.5E+02 0.0032 28.7 8.5 40 149-192 167-206 (280)
98 PRK13362 protoheme IX farnesyl 40.7 2.4E+02 0.0052 27.3 9.8 20 274-293 71-91 (306)
99 PF14256 YwiC: YwiC-like prote 39.5 2.4E+02 0.0051 23.9 13.3 13 113-125 7-19 (129)
100 PRK12324 phosphoribose diphosp 36.1 4.1E+02 0.0089 25.7 10.7 19 274-292 70-89 (295)
101 PF05977 MFS_3: Transmembrane 35.2 2.8E+02 0.0061 28.9 10.0 32 289-321 340-373 (524)
102 PRK13595 ubiA prenyltransferas 32.8 4.7E+02 0.01 25.4 12.7 59 146-208 177-235 (292)
103 TIGR03750 conj_TIGR03750 conju 28.5 2.7E+02 0.0058 23.2 6.8 35 165-203 5-39 (111)
104 PF15176 LRR19-TM: Leucine-ric 27.6 37 0.00081 27.8 1.5 21 317-337 14-34 (102)
105 PLN02776 prenyltransferase 24.5 7E+02 0.015 24.7 13.7 29 174-202 186-216 (341)
106 PRK13592 ubiA prenyltransferas 24.3 6.8E+02 0.015 24.5 11.5 18 274-292 70-87 (299)
107 PF12046 DUF3529: Protein of u 22.2 1.9E+02 0.0042 25.9 5.2 51 174-224 68-127 (173)
108 TIGR03510 XapX XapX domain. Th 21.4 1.5E+02 0.0032 21.1 3.4 37 215-251 8-44 (49)
109 COG0109 CyoE Polyprenyltransfe 21.3 6.7E+02 0.014 24.6 9.0 52 274-325 76-137 (304)
No 1
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.6e-49 Score=362.31 Aligned_cols=244 Identities=63% Similarity=1.073 Sum_probs=230.0
Q ss_pred cccchhccccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 019626 87 KSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDID 166 (338)
Q Consensus 87 ~~~~~~~~~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD 166 (338)
+++|... .|++|++|+||+|++||+++|+..+|+.|+.++|+..|..++..++.++.+|+++++++||++||+.|+|+|
T Consensus 53 sss~~~~-~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD 131 (353)
T KOG1381|consen 53 SSSLVAS-SPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKDLD 131 (353)
T ss_pred chhhhhc-CCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence 3444442 578899999999999999999999999999999997777778888999999999999999999999999999
Q ss_pred ccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHH
Q 019626 167 NMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGAL 246 (338)
Q Consensus 167 ~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l 246 (338)
++++|||.|||++|++|++||+.+..++..+|+.+..++||.+..+|..++...+.|+.+||++.|||+++|++++++.+
T Consensus 132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAl 211 (353)
T KOG1381|consen 132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGAL 211 (353)
T ss_pred hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 019626 247 LGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNAD 317 (338)
Q Consensus 247 ~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~ 317 (338)
+||.|+.|+.++...+++|+...+|++ |.+||.+.|+|+++.++|++++.|+.++.+..++.+.++|++.+
T Consensus 212 lGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~La~aG~~s~ 291 (353)
T KOG1381|consen 212 LGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASD 291 (353)
T ss_pred hcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHHHHhhhccC
Confidence 999999999988888889999999997 99999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 019626 318 IGIYLLLVVFCSSR 331 (338)
Q Consensus 318 lg~~y~~~~~i~~~ 331 (338)
.+|+||++++..+-
T Consensus 292 q~~pyy~~lg~~~~ 305 (353)
T KOG1381|consen 292 QTWPYYAALGAVAA 305 (353)
T ss_pred CCchHHHHHHHHHH
Confidence 99999998766553
No 2
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=1.6e-45 Score=351.63 Aligned_cols=238 Identities=79% Similarity=1.320 Sum_probs=215.9
Q ss_pred ccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCC
Q 019626 95 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRL 174 (338)
Q Consensus 95 ~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~ 174 (338)
+|+++++|+||+|++||.++++..+|+.+|..+++..++.+++..+++++++.+++++++|++||++|+|+|++|+||++
T Consensus 2 ~~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~ 81 (289)
T PLN02809 2 LPPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKL 81 (289)
T ss_pred CchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCC
Confidence 57899999999999999999999999999999986334446777778899999999999999999999999999999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626 175 RPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG 254 (338)
Q Consensus 175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g 254 (338)
||+|+|++|++||+.+..++.++|+.+++.+|+.++.++..++++.++||++||+++++++++|+++++++++||.+++|
T Consensus 82 RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~av~g 161 (289)
T PLN02809 82 RPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVKG 161 (289)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHhcCcchHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626 255 SLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLV 325 (338)
Q Consensus 255 ~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~ 325 (338)
++++..++++++..++|+. |+|||+++|+||+|+++|++++.+++.++.+++.++...++..++|+.|+++
T Consensus 162 ~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 241 (289)
T PLN02809 162 SLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGWPYYAG 241 (289)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 9887665446777788884 9999999999999999999988888888888888888899999999999986
Q ss_pred HHHHHHh
Q 019626 326 VFCSSRL 332 (338)
Q Consensus 326 ~~i~~~~ 332 (338)
..+.+.+
T Consensus 242 ~~~~~~~ 248 (289)
T PLN02809 242 LAAAAGH 248 (289)
T ss_pred HHHHHHH
Confidence 6655544
No 3
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=4.3e-44 Score=345.48 Aligned_cols=250 Identities=46% Similarity=0.811 Sum_probs=219.9
Q ss_pred CCCcccccchhccccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCC---CCCcHHHHHHHHHHHHHHHHHHHHhh
Q 019626 82 SSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRG---HFPDFKMMALFGCGALLLRGAGCTVN 158 (338)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g---~~~~l~~~ll~~l~~~l~~~a~~~lN 158 (338)
..+.+.++|+...+|+++++|+||+|++||++.++.++|+++|.++|...+ +..++..+++++++++++++++|++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~N 92 (314)
T PRK12878 13 VADAPSGNWVDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYN 92 (314)
T ss_pred ccccccccchhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456655578999999999999999999999999999999986431 13566677889999999999999999
Q ss_pred hcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHH
Q 019626 159 DLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLG 238 (338)
Q Consensus 159 D~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~g 238 (338)
||+|+|+|++|+||++||+++|++|++||+.++.++.++|+.+++..|+.++.+++.+++..+.||++||++++++.++|
T Consensus 93 d~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~G 172 (314)
T PRK12878 93 DIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAYPFMKRITWWPQFFLG 172 (314)
T ss_pred HHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 99999999999999999999999999999999999999999999889999999999999889999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHH
Q 019626 239 LTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSL 309 (338)
Q Consensus 239 l~~al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l 309 (338)
+++++++++||++++|++++..++ +++..++|+. |+|||+++|+||+|+++|++++.+++.++++..+++
T Consensus 173 l~~~~~~l~g~~a~~g~~~~~~~~-l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~ 251 (314)
T PRK12878 173 LAFSWGALMGWAAHFGSLSLAAVL-LYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLM 251 (314)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHH-HHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999987765 7777888875 999999999999999999999998887777777777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHh
Q 019626 310 ALSGYNADIGIYLLLVVFCSSRL 332 (338)
Q Consensus 310 ~~~g~~~~lg~~y~~~~~i~~~~ 332 (338)
.+.+...++|+.|+++++..++.
T Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~ 274 (314)
T PRK12878 252 GLAFWLAGVPLLALLGLLAAAAH 274 (314)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777899998776665554
No 4
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.7e-44 Score=341.46 Aligned_cols=236 Identities=32% Similarity=0.513 Sum_probs=211.9
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR 175 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R 175 (338)
|+++++|+||+|++||.++++.++|+++|..++.. + .+++...+++++|.+++++++|++||+.|+|+|++|+||++|
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~-~-~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 81 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPS-A-PPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNR 81 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCC
Confidence 67899999999999999999999999999887642 2 356767888999999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHH
Q 019626 176 PVASGLLTPFQGLSFLGFQLLLGLGILLQL----NNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAA 251 (338)
Q Consensus 176 PI~sG~IS~~~A~~~~~~l~~lgl~l~~~l----~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a 251 (338)
|+|+|++|++||+.++.++.++++.+++.+ |+.++.++.+++++..+||++||++.++|+++|+++++++++||.|
T Consensus 82 Pl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~A 161 (294)
T PRK12873 82 PLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCWGFAVLIPWAA 161 (294)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999888765 6788888888888899999999999999999999999999999999
Q ss_pred hcCCCCHHHH-HHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 019626 252 VKGSLDLAVV-FPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIY 321 (338)
Q Consensus 252 ~~g~~~~~~l-l~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~ 321 (338)
++|++++... +.+++..++|+. |+|||+++|+||+|+++|+++..+...+++++++++...|+..++|+.
T Consensus 162 v~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~~~~~~~~ll~~~g~~~~l~~~ 241 (294)
T PRK12873 162 AEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLALAAFIAQVGFI 241 (294)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 9999986433 235678889986 999999999999999999877777778999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 019626 322 LLLVVFCSSRLL 333 (338)
Q Consensus 322 y~~~~~i~~~~~ 333 (338)
||+++.+.+.++
T Consensus 242 y~~~~~~~~~~l 253 (294)
T PRK12873 242 FWPFWLIASIGM 253 (294)
T ss_pred HHHHHHHHHHHH
Confidence 998877766544
No 5
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=4.7e-44 Score=341.82 Aligned_cols=237 Identities=37% Similarity=0.587 Sum_probs=215.6
Q ss_pred cccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCC
Q 019626 94 YLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTR 173 (338)
Q Consensus 94 ~~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~ 173 (338)
..|+++++|+|++|++||.+.++.++|+++|..+|.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||+
T Consensus 4 ~~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~-~-~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~ 81 (290)
T PRK12870 4 TLEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAH-G-LPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTR 81 (290)
T ss_pred CcchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCccc
Confidence 3568999999999999999999999999999999863 3 4677778888999999999999999999999999999999
Q ss_pred CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhc
Q 019626 174 LRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVK 253 (338)
Q Consensus 174 ~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~ 253 (338)
+||+|+|++|++||..++.++.++|+.+++++|+.++.+++.++++.++||++||++.++|+++|+++++++++||.+++
T Consensus 82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~a~~ 161 (290)
T PRK12870 82 FRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVT 161 (290)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccccceeeehHHHHhHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 019626 254 GSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLL 324 (338)
Q Consensus 254 g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~ 324 (338)
|++++..++ +++..++|+. |+|||+++|+||+|+++|++++.+++.++.++..++...++..++|++|++
T Consensus 162 g~~~~~~~~-l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~ 240 (290)
T PRK12870 162 GHLDLGTWL-LWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFWI 240 (290)
T ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 999987776 7778888875 999999999999999999999999888777778778888888899999998
Q ss_pred HHHHHHHhh
Q 019626 325 VVFCSSRLL 333 (338)
Q Consensus 325 ~~~i~~~~~ 333 (338)
++++.+.++
T Consensus 241 ~~~~~~~~l 249 (290)
T PRK12870 241 GLAIAAVLW 249 (290)
T ss_pred HHHHHHHHH
Confidence 776665554
No 6
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=1e-42 Score=331.22 Aligned_cols=236 Identities=39% Similarity=0.729 Sum_probs=211.0
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR 175 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R 175 (338)
|+++++|+||+|++||.+..+.++|+++|..+|.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||++|
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~-~-~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R 79 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAAD-G-IPDLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNR 79 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCC
Confidence 67899999999999999999999999999999863 3 356666777889999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCC
Q 019626 176 PVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGS 255 (338)
Q Consensus 176 PI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~ 255 (338)
|+|+|++|++||+.++.++.++|+++++.+|+.++.+++.+++..++|+++||++.++++++|+++++++++||.+++|+
T Consensus 80 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~g~~~~~g~~a~~~~ 159 (282)
T PRK12848 80 PLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYPFMKRYTHLPQVVLGAAFGWGIPMAFAAVQGS 159 (282)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHhcCcccHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999888888999998999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019626 256 LDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVV 326 (338)
Q Consensus 256 ~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~~ 326 (338)
++...++ +++..++|+. |+|||+++|+||+|+++|+|++.++..++.+...++.+.++..++|+.|++++
T Consensus 160 ~~~~~~~-l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 238 (282)
T PRK12848 160 VPLEAWL-LFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYWGL 238 (282)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 9888776 7778888875 99999999999999999999988887766666666666677778899999887
Q ss_pred HHHHHhhh
Q 019626 327 FCSSRLLS 334 (338)
Q Consensus 327 ~i~~~~~~ 334 (338)
++.++.+.
T Consensus 239 ~~~~~~~~ 246 (282)
T PRK12848 239 LVAAALFV 246 (282)
T ss_pred HHHHHHHH
Confidence 77766553
No 7
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=1.1e-42 Score=330.94 Aligned_cols=234 Identities=53% Similarity=0.945 Sum_probs=208.7
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccc
Q 019626 99 ARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVA 178 (338)
Q Consensus 99 l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~ 178 (338)
|++|.||+|++||.++++..+|+++|..+|...++.+++...++.+++++++++++|++|||+|+|+|++|+||++||+|
T Consensus 1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~ 80 (281)
T TIGR01474 1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLA 80 (281)
T ss_pred ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCC
Confidence 47899999999999999999999999999864333456666777888999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCCH
Q 019626 179 SGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDL 258 (338)
Q Consensus 179 sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~ 258 (338)
+|++|++||+.++.++.++|+.+++.+|+.+..+++.+++..+.||++||+++++++++|+++++++++||.+++|++++
T Consensus 81 sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~ 160 (281)
T TIGR01474 81 SGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLST 160 (281)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhchhcccccccHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 019626 259 AVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCS 329 (338)
Q Consensus 259 ~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~~~i~ 329 (338)
..++ +++..++|+. |+|||+++|+||+|+++|++++.+...++++...++.+.+...+.|+.|++++++.
T Consensus 161 ~~~l-l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 239 (281)
T TIGR01474 161 AAWV-LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLGLAAA 239 (281)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 7765 6677778874 99999999999999999999887777777777777778888888899999876655
Q ss_pred HHhh
Q 019626 330 SRLL 333 (338)
Q Consensus 330 ~~~~ 333 (338)
+.++
T Consensus 240 ~~~~ 243 (281)
T TIGR01474 240 ALLL 243 (281)
T ss_pred HHHH
Confidence 5443
No 8
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=5.9e-42 Score=326.33 Aligned_cols=230 Identities=41% Similarity=0.744 Sum_probs=203.5
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP 176 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP 176 (338)
+++++|+|++|++||.+.++..+|+++|.++|.. +..+++..+++++++++++++++|++|||+|+|+|++|+||++||
T Consensus 5 ~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~-~~~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rp 83 (285)
T PRK12847 5 MKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASH-SLLPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRP 83 (285)
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhC-ccCCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCC
Confidence 4799999999999999999999999999999864 222577778889999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626 177 VASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSL 256 (338)
Q Consensus 177 I~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~ 256 (338)
+++|++|++||+.++.++.++|+.+++++|+.++.+++++++.+++||+.||+++++++++|+++++++++||.+++|++
T Consensus 84 l~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~l~~~~a~~g~~ 163 (285)
T PRK12847 84 LASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQL 163 (285)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 019626 257 DLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVF 327 (338)
Q Consensus 257 ~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~~~ 327 (338)
++..++ +++..++|+. |+|||+++|+||+|+++|+|++.++..+..+...++.+.++..+.+..||.++.
T Consensus 164 ~~~~~~-l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 242 (285)
T PRK12847 164 DIEAIL-LYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAIL 242 (285)
T ss_pred cHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 988776 7777788875 999999999999999999999988876555555556666666667666665444
Q ss_pred H
Q 019626 328 C 328 (338)
Q Consensus 328 i 328 (338)
+
T Consensus 243 ~ 243 (285)
T PRK12847 243 A 243 (285)
T ss_pred H
Confidence 3
No 9
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.6e-40 Score=317.70 Aligned_cols=232 Identities=24% Similarity=0.373 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR 175 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R 175 (338)
.+++++|+||+|++++. +...++++|..+|.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||++|
T Consensus 5 ~~~~~~y~~L~r~~~~~---~~~~~~~~g~~lA~~-~-~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 79 (291)
T PRK12886 5 LTKLKVFLEMIKFSHTL---FALPFAGIGAVLAAL-G-LPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR 79 (291)
T ss_pred HHHHHHHHHHhCccchH---HHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence 47899999999998884 445567788888752 3 356767888899999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCC
Q 019626 176 PVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGS 255 (338)
Q Consensus 176 PI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~ 255 (338)
|+++|++|++||+.+...+.+.++.+++.+|+.+..+++++++....||++||++.++++++|+++++++++||.+++|+
T Consensus 80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~ 159 (291)
T PRK12886 80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRGT 159 (291)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999977777777777778999999888888888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626 256 LDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLV 325 (338)
Q Consensus 256 ~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~ 325 (338)
+++..++ +++..++|+. |+|||+++|+||+|+++|++++.++. .+.++++++++++++..+.|+.|+++
T Consensus 160 ~~~~~~l-l~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 238 (291)
T PRK12886 160 IELPAIL-LGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLAG 238 (291)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 9888776 6777788874 99999999999999999999988876 67788888899999989999999987
Q ss_pred HHHHHHhh
Q 019626 326 VFCSSRLL 333 (338)
Q Consensus 326 ~~i~~~~~ 333 (338)
+.+.+.++
T Consensus 239 ~~~~~~~~ 246 (291)
T PRK12886 239 LAVTGILL 246 (291)
T ss_pred HHHHHHHH
Confidence 76666554
No 10
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-40 Score=317.62 Aligned_cols=230 Identities=23% Similarity=0.364 Sum_probs=200.7
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcC---CCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCC
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAP---RGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRL 174 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~---~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~ 174 (338)
++++|+|++|++|. +...|.....++++. .+ .+++..+++.+++.+++++++|++|||+|+|+|++|+||++
T Consensus 1 ~~~~~~~l~r~~~~----~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~ 75 (284)
T PRK12888 1 RVRAFLRLVAIEHS----VFALPFAYIAALTAMFASDG-SVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAG 75 (284)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCC
Confidence 37899999999987 455566544444331 23 45777788899999999999999999999999999999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626 175 RPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG 254 (338)
Q Consensus 175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g 254 (338)
||+|+|++|++||+.++.++.++++.++..+|+.++.++.++++..+.|+++||+++++|+++|+++++++++||.+++|
T Consensus 76 RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g 155 (284)
T PRK12888 76 RELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPVGAWIAVTG 155 (284)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998888888888899999888888888889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHH
Q 019626 255 SLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLL 324 (338)
Q Consensus 255 ~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~ 324 (338)
++++..++ +++..++|+. |+|||+++|+||+|+++|+|++.+++ .++++++++++++++..++|+.|++
T Consensus 156 ~~~~~~~l-l~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~ 234 (284)
T PRK12888 156 TWSWPAVL-LGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWI 234 (284)
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 99987776 7778888875 99999999999999999999988765 6788888888999999999999998
Q ss_pred HHHHHHHhh
Q 019626 325 VVFCSSRLL 333 (338)
Q Consensus 325 ~~~i~~~~~ 333 (338)
++++.+.++
T Consensus 235 ~~~~~~~~l 243 (284)
T PRK12888 235 GLAITAGAF 243 (284)
T ss_pred HHHHHHHHH
Confidence 776665543
No 11
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-40 Score=318.92 Aligned_cols=232 Identities=20% Similarity=0.255 Sum_probs=199.7
Q ss_pred ccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCC
Q 019626 95 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRL 174 (338)
Q Consensus 95 ~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~ 174 (338)
..+++++|+||+|++|+.+. ..++++|..+|.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||++
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~---l~~~~~g~~la~~-~-~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~ 85 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFS---LPMAYLGAFVAIK-G-IPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN 85 (300)
T ss_pred hHHHHHHHHHHHccccHHHH---HHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence 35789999999999999644 4568888888753 3 46777788899999999999999999999999999999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626 175 RPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG 254 (338)
Q Consensus 175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g 254 (338)
||+|+|++|++||+.+..++.+.++++++++|+.+..++..+++..+.||++||+++++|+++|+++++++++||.+++|
T Consensus 86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g 165 (300)
T PRK13106 86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLG 165 (300)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhcCCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998888888888888899999888888887888999999999999999999999999999999887
Q ss_pred CCC--------HHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHh
Q 019626 255 SLD--------LAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNA 316 (338)
Q Consensus 255 ~~~--------~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~ 316 (338)
... ...++ +++..++|+. |+|+|++.|+||+|+++| +++..++ .+++++++++.++++..
T Consensus 166 ~~~~~~~~~l~~~~~~-l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~ 243 (300)
T PRK13106 166 LYANSLIQVLLRVPWL-FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYY 243 (300)
T ss_pred CcccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 542 22232 5667788885 999999999999999999 6666554 69999999999999999
Q ss_pred hhhHHHHHHHHHHHHhh
Q 019626 317 DIGIYLLLVVFCSSRLL 333 (338)
Q Consensus 317 ~lg~~y~~~~~i~~~~~ 333 (338)
++|+.|++++.+.+.++
T Consensus 244 ~lg~~y~~~~~~~~~~l 260 (300)
T PRK13106 244 GLGPIAIAATILHGLIM 260 (300)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 99999998877766554
No 12
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-40 Score=317.70 Aligned_cols=229 Identities=20% Similarity=0.267 Sum_probs=196.3
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV 177 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI 177 (338)
++|.|+|++|+++. .+.+.-.++|..+|.. + .+++..+++.+++.+++++++|++||++|+|+|++|+||++||+
T Consensus 2 ~~~~~~el~k~~~t---~~al~~a~~g~~lA~~-~-~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHT---VFDLPFILAGYVIAAG-H-YIHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHH---HHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 57899999877765 2333344567777642 2 34555566778889999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCC
Q 019626 178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLD 257 (338)
Q Consensus 178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~ 257 (338)
|+|++|++||+.+..++.++|+.+++++|+.++.++...+.+...|+++||+++++|+++|++.++++++||.+++|+++
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~~ 156 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAFP 156 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999888888877788888899999999999999999999999999999887
Q ss_pred HH--HHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626 258 LA--VVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLV 325 (338)
Q Consensus 258 ~~--~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~ 325 (338)
+. .++ +++..++|+. |+|||++.|+||+|+++|++++.+++ .+++++++++.++|+... |+.|+++
T Consensus 157 ~~~~~~~-l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~~y~~~ 234 (286)
T PRK12895 157 YNLLIYI-IFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TLWYLAA 234 (286)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence 43 233 7888999986 99999999999999999999998776 688999999999998776 8999988
Q ss_pred HHHHHHhh
Q 019626 326 VFCSSRLL 333 (338)
Q Consensus 326 ~~i~~~~~ 333 (338)
+.+.+.++
T Consensus 235 ~~~~~~~l 242 (286)
T PRK12895 235 LIIIYTLV 242 (286)
T ss_pred HHHHHHHH
Confidence 87766554
No 13
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-39 Score=311.85 Aligned_cols=234 Identities=25% Similarity=0.382 Sum_probs=198.1
Q ss_pred ccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhc----CCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q 019626 95 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAA----PRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVE 170 (338)
Q Consensus 95 ~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~----~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~ 170 (338)
..+++|+|+|++|++++...... .++|..+|. ..+ .+++..+++++++++++++++|++|||+|+|+|++|+
T Consensus 4 ~~~~l~~y~~l~r~~~~~~~l~~---a~~g~~la~~~~~~~~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~ 79 (291)
T PRK12874 4 FTKKLKDISELVVFKHSIFSLPF---IFIAMIVASKQKNDTG-WFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNP 79 (291)
T ss_pred HHHHHHHHHHHHhhccHHHHHHH---HHHHHHHHhhhhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence 45789999999999998544332 344444443 123 3577788889999999999999999999999999999
Q ss_pred CCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHH
Q 019626 171 RTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWA 250 (338)
Q Consensus 171 rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~ 250 (338)
||++||+|+|++|++||+.++.++.++++.+++++|+.+..+++..+++...||++||+++++|+++|+++++++++||.
T Consensus 80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~~ 159 (291)
T PRK12874 80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGVV 159 (291)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888889999888887777889999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhH
Q 019626 251 AVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGI 320 (338)
Q Consensus 251 a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~ 320 (338)
+++|+++...++ +++..++|+. |+|+|+++|+||+|+++|++++.++. .+++..+.++...++..+.++
T Consensus 160 av~g~~~~~~~~-l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (291)
T PRK12874 160 AVLGEIPLWSVF-LALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGL 238 (291)
T ss_pred HHcCCCcHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 999999877665 6777788886 99999999999999999999887764 566667777777777777777
Q ss_pred HHHHHHHHHHHhh
Q 019626 321 YLLLVVFCSSRLL 333 (338)
Q Consensus 321 ~y~~~~~i~~~~~ 333 (338)
.|++++.+++..+
T Consensus 239 ~~~~~~~~~~~~l 251 (291)
T PRK12874 239 FAYLGVIVSALIL 251 (291)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777666554
No 14
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=3.2e-39 Score=307.02 Aligned_cols=230 Identities=29% Similarity=0.391 Sum_probs=197.8
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV 177 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI 177 (338)
++|+|+||+|++++... ...+.+|..+|.. + .+++..+++++++++++++++|++|||+|+|+|++|+||++||+
T Consensus 1 ~~~~~~~L~r~~~~~~~---~~~~~~g~~la~~-~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFA---LPFAYAGALLAAK-G-LPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHH---HHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 47899999999888432 2234457777643 3 45777788899999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCC
Q 019626 178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLD 257 (338)
Q Consensus 178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~ 257 (338)
++|++|+++|+.++.++.++++.++..+|+.+..++..+.+..+.|+++||+++++++++|+++++++++||.+++|+++
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~ 155 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIYPYTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTIS 155 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHhccccccHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999998888888888899999888888888899999999999999999999999999999999999888
Q ss_pred --HHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626 258 --LAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLV 325 (338)
Q Consensus 258 --~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~ 325 (338)
...++ +++..++|+. |+|+|+++|+||+|+++|+|++.++. .+..++++++.+++...+.|+.|+++
T Consensus 156 ~~~~~~l-l~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~ 234 (282)
T TIGR01475 156 FFLVAWL-LGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLA 234 (282)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 65555 6677777775 99999999999999999988877665 56778888888899989899999987
Q ss_pred HHHHHHhh
Q 019626 326 VFCSSRLL 333 (338)
Q Consensus 326 ~~i~~~~~ 333 (338)
+.+.+.++
T Consensus 235 ~~~~~~~l 242 (282)
T TIGR01475 235 LILIGLIL 242 (282)
T ss_pred HHHHHHHH
Confidence 77766443
No 15
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4e-39 Score=307.85 Aligned_cols=227 Identities=25% Similarity=0.256 Sum_probs=192.5
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHH-HHHhhcC----CCC---CCcHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMW-SITMAAP----RGH---FPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNM 168 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~-g~~lA~~----~g~---~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~ 168 (338)
+++|.|.|++|++|. ++.+|... |+.+|+. .++ .|+|..++++.++.+++++++|++||++|+|+|++
T Consensus 2 ~~~~~~~~~i~~~ht----~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~ 77 (300)
T PRK12876 2 MRIKYFQQLINCKYA----LFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKK 77 (300)
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCC
Confidence 468999999999998 78889875 4455541 134 57888889999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHH
Q 019626 169 VERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLG 248 (338)
Q Consensus 169 ~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g 248 (338)
|+||++||+|+|++|++||+.++..+.++++++++++|+.++.++.++++..++||++||+++++|+++|+++++++++|
T Consensus 78 ~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~~KR~t~~~~~vLGl~~~~~~l~~ 157 (300)
T PRK12876 78 NPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILMN 157 (300)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888889999999999999998889999999999999999999999999999
Q ss_pred HHHhcCC-CCHHHHH---HHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHH-HHHHHHHHHHHHHHHH
Q 019626 249 WAAVKGS-LDLAVVF---PMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWT-TGFGIACISSLALSGY 314 (338)
Q Consensus 249 ~~a~~g~-~~~~~ll---~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l-~~~~~~~i~~l~~~g~ 314 (338)
|.+++++ +++.... ...+..++|.. |+|+|++.|+||+|+++|++++..+ ..++++.++++.+.++
T Consensus 158 ~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~ 237 (300)
T PRK12876 158 FFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGY 237 (300)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877 5542211 12233444543 9999999999999999999998655 4688888998999999
Q ss_pred HhhhhHHHHH-HHH
Q 019626 315 NADIGIYLLL-VVF 327 (338)
Q Consensus 315 ~~~lg~~y~~-~~~ 327 (338)
..++|++||+ +++
T Consensus 238 ~~~l~~~~y~~~~~ 251 (300)
T PRK12876 238 FVSNKKIFYLCSLV 251 (300)
T ss_pred HhhccHHHHHHHHH
Confidence 9999988554 444
No 16
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-38 Score=302.73 Aligned_cols=236 Identities=39% Similarity=0.569 Sum_probs=209.8
Q ss_pred ccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCC
Q 019626 95 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRL 174 (338)
Q Consensus 95 ~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~ 174 (338)
.+++++.|.+++|++||+++.+..+|+++|..++. .+.+++...++++++.+++++++|++||++|+|+|++|+||++
T Consensus 6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~ 83 (289)
T COG0382 6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAA--SGLPSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKN 83 (289)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccC
Confidence 46789999999999999999999999999999986 2344567788899999999999999999999999999999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626 175 RPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG 254 (338)
Q Consensus 175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g 254 (338)
||+|+|++|+++|+.+..++.++++.+++++|+.++.++..++++.+.|+.+||.+.+++..+|.++++++++|+.++.|
T Consensus 84 RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~ 163 (289)
T COG0382 84 RPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGG 163 (289)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999997799999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHH
Q 019626 255 SLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGI-YLLL 324 (338)
Q Consensus 255 ~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~-~y~~ 324 (338)
+.+...++ +++..++|+. |+|+|++.|+||+|+.+|++++.+++.+..+..+.+...++..+.+. .|++
T Consensus 164 ~~~~~~~~-l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (289)
T COG0382 164 SLPLLAWL-LLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLL 242 (289)
T ss_pred ccchHHHH-HHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 87777776 7778888876 99999999999999999999999998644455555666666666664 8888
Q ss_pred HHHHHHHhh
Q 019626 325 VVFCSSRLL 333 (338)
Q Consensus 325 ~~~i~~~~~ 333 (338)
++.+.+.++
T Consensus 243 ~~~~~~~~~ 251 (289)
T COG0382 243 GLLVAALLL 251 (289)
T ss_pred HHHHHHHHH
Confidence 777766554
No 17
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=5.9e-38 Score=298.21 Aligned_cols=227 Identities=26% Similarity=0.330 Sum_probs=191.8
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV 177 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI 177 (338)
|+|+|+|++ ||...++..+|+++|.+++.. +.+++..+++.+++.++.++++|++|||+|+|+|++|+||++||+
T Consensus 1 ~~~~~~~l~---rp~~~~~~~~~~~~g~~la~~--~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLL---KPRVIWLLDLAAVAGYFLAAK--HGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHh---HHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 478999986 677788999999999999842 235676777888999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHH-HHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626 178 ASGLLTPFQGLSFLGFQLLLGLGILLQ-LNNFSRI-LGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKG 254 (338)
Q Consensus 178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~-l~~~~~~-l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g 254 (338)
|+|++|++||..++.++.++|+.++++ +|+.+.. +++...++.+.||. +||+++++++++|+++++++++||++++|
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g 155 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTG 155 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999887 8887654 34445578899997 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH------HHHHh---cHHHHHhcCCceeeEeeCcchHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 019626 255 SLDLAVVFPMYISG------VFWTL---DKEDDLKVGVKSTALRFGDSSKEWT-TGFGIACISSLALSGYNADIGIYLLL 324 (338)
Q Consensus 255 ~~~~~~ll~l~~~~------~~w~~---D~e~D~~~G~kTlav~~G~k~a~~l-~~~~~~~i~~l~~~g~~~~lg~~y~~ 324 (338)
++++..++ +++.. ++|+. |+|||+++|+||+|+++|+|++.++ ..++++.+++++.++. .+.|+.|++
T Consensus 156 ~~~~~~~l-l~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~ 233 (279)
T PRK12869 156 SLDLEAVL-LSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGLIGLI 233 (279)
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHH
Confidence 99887665 44444 44443 9999999999999999999987765 4577777777777777 788999998
Q ss_pred HHHHHHH
Q 019626 325 VVFCSSR 331 (338)
Q Consensus 325 ~~~i~~~ 331 (338)
++.+.+.
T Consensus 234 ~~~~~~~ 240 (279)
T PRK12869 234 LVAILSA 240 (279)
T ss_pred HHHHHHH
Confidence 7765443
No 18
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.7e-37 Score=297.43 Aligned_cols=225 Identities=27% Similarity=0.388 Sum_probs=193.0
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP 176 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP 176 (338)
+++++|+|++ ||..+.+..+|+++|.++|.. + .+++..+++++++++++++++|++|||+|+|+|++|+||++||
T Consensus 8 ~~~~~y~~L~---rp~~~~~~~~~~~~G~~la~~-~-~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp 82 (296)
T PRK04375 8 ATLKDYLALT---KPRVISLNLFTALGGMLLAPP-G-VPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP 82 (296)
T ss_pred hhHHHHHHHh---HHHHHHHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence 5799999986 677788999999999999853 3 3577778889999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH-HHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhc
Q 019626 177 VASGLLTPFQGLSFLGFQLLLGLGILLQ-LNNFSRILGASSLL-LVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVK 253 (338)
Q Consensus 177 I~sG~IS~~~A~~~~~~l~~lgl~l~~~-l~~~~~~l~~~~l~-~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~ 253 (338)
+|+|++|++||+.++.++.++|+.++++ .|+.+..++.++++ +.++||+ +||++.+++.++|+++++++++||.+++
T Consensus 83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~ 162 (296)
T PRK04375 83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVT 162 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHhC
Confidence 9999999999999999999999988755 57777777777654 6789998 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHHHHHhhhhHHHH
Q 019626 254 GSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALSGYNADIGIYLL 323 (338)
Q Consensus 254 g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~g~~~~lg~~y~ 323 (338)
|++++..++ +++..++|+. |+|||+++|+||+|+++|++++.+++. +.++.+++.++++..+..|+.|+
T Consensus 163 g~~~~~~~~-l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 241 (296)
T PRK04375 163 GSLSWEALI-LFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYL 241 (296)
T ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 999887776 7778888874 999999999999999999998887764 55555555666666666899999
Q ss_pred HHHH
Q 019626 324 LVVF 327 (338)
Q Consensus 324 ~~~~ 327 (338)
+...
T Consensus 242 ~~~~ 245 (296)
T PRK04375 242 VVAL 245 (296)
T ss_pred HHHH
Confidence 8433
No 19
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=3.9e-37 Score=292.47 Aligned_cols=228 Identities=25% Similarity=0.362 Sum_probs=192.6
Q ss_pred HHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcccc
Q 019626 100 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVAS 179 (338)
Q Consensus 100 ~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~s 179 (338)
|+|+|+ .||..+.+..+|+++|.++|.. +..+++..+++++++++++++++|++|||+|+|+|++|+||++||+++
T Consensus 1 ~~~~~l---~rp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQL---TKPRIISLLLITAFAGMWLAPG-GALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHH---ccHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 357776 5677788999999999999853 222567778889999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHH-HHHhcc-CCcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626 180 GLLTPFQGLSFLGFQLLLGLGIL-LQLNNFSRILGASSLL-LVFSYP-LMKRFTFWPQAYLGLTFNWGALLGWAAVKGSL 256 (338)
Q Consensus 180 G~IS~~~A~~~~~~l~~lgl~l~-~~l~~~~~~l~~~~l~-~~~~Ys-~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~ 256 (338)
|++|++||..++.++.++|+.++ +.+|+....++.++++ +.++|| .+||+++++++++|+.+++++++||.+++|++
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~ 156 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSI 156 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998844 5589888888888875 489999 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHH-H
Q 019626 257 DLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLL-V 325 (338)
Q Consensus 257 ~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~-~ 325 (338)
++..++ +++..++|+. |+|||+++|+||+|+++|+|++.++. ...+..+....+++..+.+|+.|++ +
T Consensus 157 ~~~~~~-l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 235 (280)
T TIGR01473 157 SLGAWL-LFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVA 235 (280)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 987765 6666777754 99999999999999999999887765 4566666667777778889999995 4
Q ss_pred HHHHHHh
Q 019626 326 VFCSSRL 332 (338)
Q Consensus 326 ~~i~~~~ 332 (338)
++++..+
T Consensus 236 ~~~~~~~ 242 (280)
T TIGR01473 236 TLLGALF 242 (280)
T ss_pred HHHHHHH
Confidence 4444443
No 20
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=2.2e-36 Score=290.82 Aligned_cols=230 Identities=22% Similarity=0.274 Sum_probs=194.3
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP 176 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP 176 (338)
+++|+|+|++ ||+.+....+|+++|.+++.. + .+++..+++.+++.++.++++|++|||+|+|+|++|+||++||
T Consensus 11 ~~l~~~~~L~---RP~~~~~~~~~~~~G~~la~~-~-~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RP 85 (306)
T PRK13362 11 ASLKDYIQVT---KPGIIFGNVISVAGGFFLASK-G-HVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRV 85 (306)
T ss_pred HHHHHHHHHh---CHHHHHHHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCC
Confidence 5689999985 688888999999999999842 3 3566667777889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH-HHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhc
Q 019626 177 VASGLLTPFQGLSFLGFQLLLGLGILL-QLNNFSRILGASSL-LLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVK 253 (338)
Q Consensus 177 I~sG~IS~~~A~~~~~~l~~lgl~l~~-~l~~~~~~l~~~~l-~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~ 253 (338)
+|+|++|++||+.++.++.++|+.++. ..|+.+..++.+++ .+.++||. +||++.++++++|+++++++++||.+++
T Consensus 86 lpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~ 165 (306)
T PRK13362 86 TVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVT 165 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998664 56888777776665 46889995 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHH
Q 019626 254 GSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLL 323 (338)
Q Consensus 254 g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~ 323 (338)
|++++..++ +++..++|+. |+|||+++|+||+|+++|+|++.+.. ...++.+...+++...+..|+.|+
T Consensus 166 g~~~~~~~~-l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~~g~~g~~y~ 244 (306)
T PRK13362 166 GQFDAGALI-LLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPLAGYTGIGYL 244 (306)
T ss_pred CCCcHHHHH-HHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 999988776 7788888884 99999999999999999998877665 445555565666666666788898
Q ss_pred HHHHHHHHh
Q 019626 324 LVVFCSSRL 332 (338)
Q Consensus 324 ~~~~i~~~~ 332 (338)
+.+.+.+..
T Consensus 245 ~~~~~~~~~ 253 (306)
T PRK13362 245 AVAAATSLW 253 (306)
T ss_pred HHHHHHHHH
Confidence 866665543
No 21
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=7e-35 Score=276.86 Aligned_cols=226 Identities=22% Similarity=0.292 Sum_probs=189.9
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV 177 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI 177 (338)
++++|+|++|++++ ...++|+++|.+++.. + .+++..+++++++++++++++|++|||+|+|+|++|++ +||+
T Consensus 2 ~~~~~~~l~Rp~~~---~~~~~~~~~g~~la~~-~-~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~--~Rpl 74 (279)
T PRK09573 2 SIKAYFELIRPKNC---IGASIGAIIGYLIASN-F-KIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINKP--ERPI 74 (279)
T ss_pred CHHHHHHHHhHhHH---HHHHHHHHHHHHHHcc-C-CcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccCC--CCCc
Confidence 47899999776654 5677799999988853 2 34666778899999999999999999999999999985 8999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626 178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGSL 256 (338)
Q Consensus 178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~ 256 (338)
|+|++|++||+.++.++.++|+.+++.+|+.++.+++++++..++|+. +||++.++|.+.|...+..+++|+.+.++.
T Consensus 75 ~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~- 153 (279)
T PRK09573 75 PSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAKDLKKTGLIGNLIVAYLTGLSFIFGGLAVFNV- 153 (279)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 999999999999999999999999999999999999999988999995 999999999999998888899999888763
Q ss_pred CHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019626 257 DLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLVV 326 (338)
Q Consensus 257 ~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~~ 326 (338)
...++ ++...++|+. |+|+|+++|+||+|+++|+|++.+++ .+.++.+.++.+++..+..|+.|++++
T Consensus 154 -~~~~~-l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 231 (279)
T PRK09573 154 -LRIII-LFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVV 231 (279)
T ss_pred -hHHHH-HHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343 5556667763 99999999999999999999988876 466777777777777766899999877
Q ss_pred HHHHHhh
Q 019626 327 FCSSRLL 333 (338)
Q Consensus 327 ~i~~~~~ 333 (338)
.+.+..+
T Consensus 232 ~~~~~~~ 238 (279)
T PRK09573 232 IICDILF 238 (279)
T ss_pred HHHhHHH
Confidence 6655443
No 22
>PLN02776 prenyltransferase
Probab=100.00 E-value=1e-34 Score=281.56 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=181.7
Q ss_pred cccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHH
Q 019626 108 LDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQG 187 (338)
Q Consensus 108 l~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A 187 (338)
+.||+.+.+.++.++.|+.+|.. +.+++..+++.++|++++++++|++||++|+|+|++|+||++||+|+|++|+++|
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~--~~~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A 78 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSG--EAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHA 78 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHH
Confidence 36888899999999999999852 2357777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHH-HHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 019626 188 LSFLGFQLLLGLGI-LLQLNNFSRILGASSLL-LVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMY 265 (338)
Q Consensus 188 ~~~~~~l~~lgl~l-~~~l~~~~~~l~~~~l~-~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~~~ll~l~ 265 (338)
+.++.++.++|+.+ ++++|+.+..+++.+++ +...||++||+++++.+++++.+++++++||.|++|++++..++ ++
T Consensus 79 ~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~~~~~-Lf 157 (341)
T PLN02776 79 VAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGAIPPLMGWAAASGQLDAGAMV-LA 157 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHccCCchhHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HH
Confidence 99999999999855 56789999999888764 57899999999999876666667799999999999999998887 88
Q ss_pred HHHHHHHh---------cHHHHHhcCCceeeEee--CcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 019626 266 ISGVFWTL---------DKEDDLKVGVKSTALRF--GDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCSS 330 (338)
Q Consensus 266 ~~~~~w~~---------D~e~D~~~G~kTlav~~--G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~~~i~~ 330 (338)
+..++|+. |.|||+++|+|++|+.. |++++.++.....+.....+++......|++|++...+.+
T Consensus 158 ~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~~~~a~~l~ 233 (341)
T PLN02776 158 AALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLT 233 (341)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888986 99999999999999976 5677777775544444444444444545666665444333
No 23
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-36 Score=282.34 Aligned_cols=231 Identities=27% Similarity=0.370 Sum_probs=200.9
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR 175 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R 175 (338)
.+++|+|+|| .||+...+.++.++.|+.+|.. + ..++..+++..+|..+..+++|++|+++|+|+|++|+||++|
T Consensus 15 ~~~~k~yl~L---tKPrvi~L~~it~~~g~~lA~~-~-~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R 89 (304)
T COG0109 15 RSTIKDYLQL---TKPRVISLLLITAFAGMLLAPR-G-SINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR 89 (304)
T ss_pred HHHHHHHHHH---hCCeeeehHHHHHHHHHHHccc-c-cccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence 3689999997 7899999999999999999974 3 346778889999999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH-HHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHh
Q 019626 176 PVASGLLTPFQGLSFLGFQLLLGLGIL-LQLNNFSRILGASSL-LLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAV 252 (338)
Q Consensus 176 PI~sG~IS~~~A~~~~~~l~~lgl~l~-~~l~~~~~~l~~~~l-~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~ 252 (338)
|+++|+|+|+||+.++.++.++|+.+. +.+|+...+++++++ +++++||. +||+++++.+++|+.+++|+++||+|+
T Consensus 90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAv 169 (304)
T COG0109 90 PLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAV 169 (304)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeeee
Confidence 999999999999999999999999988 778999999999887 68999996 999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcch-HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 019626 253 KGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSS-KEWTTGFGIACISSLALSGYNADIGIYL 322 (338)
Q Consensus 253 ~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~-a~~l~~~~~~~i~~l~~~g~~~~lg~~y 322 (338)
+|++++..++ +++..++||. .+||++++|++++|+..|++. +..+....++.....+++...+..|+.|
T Consensus 170 tg~~~~~a~~-Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y 248 (304)
T COG0109 170 TGSISLGAIL-LFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLY 248 (304)
T ss_pred eCCCCchHHH-HHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 9999998876 6777777774 999999999999999999975 4555566666666666666655567888
Q ss_pred HHHHHHHHHh
Q 019626 323 LLVVFCSSRL 332 (338)
Q Consensus 323 ~~~~~i~~~~ 332 (338)
.+.+.+.+..
T Consensus 249 ~v~a~~l~~~ 258 (304)
T COG0109 249 LVVATLLGAW 258 (304)
T ss_pred HHHHHHHHHH
Confidence 8766665543
No 24
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-33 Score=268.17 Aligned_cols=226 Identities=19% Similarity=0.254 Sum_probs=186.0
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP 176 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP 176 (338)
+++++|+|++|+.++ ....+++++|.++|.. ..+ +..+++++++.+++++++|++|||+|+|+|++| |+ +||
T Consensus 2 ~~l~~~~~l~R~~~~---~~~~~~~~~g~~la~~--~~~-~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~-~Rp 73 (279)
T PRK12884 2 TKMKAYLELLRPEHG---LMAGIAVVLGAIIALG--GLP-LDEALLGFLTAFFASGSANALNDYFDYEVDRIN-RP-DRP 73 (279)
T ss_pred hHHHHHHHHhhhhHH---HHHHHHHHHHHHHHCC--CCc-hHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CC-CCC
Confidence 479999999877665 4666778899988753 222 345677889999999999999999999999999 53 999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCC
Q 019626 177 VASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGS 255 (338)
Q Consensus 177 I~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~ 255 (338)
+++|++|+++++.++.++.++++.++..+|+..+.++++++++++.||. +||++.+++++.|++.+++++.|+.+.++.
T Consensus 74 l~~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 153 (279)
T PRK12884 74 IPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGEL 153 (279)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999998888888889999997 899998899999999999999999887654
Q ss_pred CCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626 256 LDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLV 325 (338)
Q Consensus 256 ~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~ 325 (338)
.+ ..++ ++...++|+. |+|||+++|+||+|+++|+|++.+++ .+.+...++..+++..+..++.|++.
T Consensus 154 ~~-~~~~-l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 231 (279)
T PRK12884 154 NE-AVIL-LAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAP 231 (279)
T ss_pred ch-HHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 43 3443 4555666654 99999999999999999999988876 45666666666677777778899876
Q ss_pred HHHHHHh
Q 019626 326 VFCSSRL 332 (338)
Q Consensus 326 ~~i~~~~ 332 (338)
+.+.+.+
T Consensus 232 ~~~~~~~ 238 (279)
T PRK12884 232 VLVADLI 238 (279)
T ss_pred HHHHHHH
Confidence 6654443
No 25
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.5e-33 Score=262.88 Aligned_cols=227 Identities=22% Similarity=0.283 Sum_probs=180.9
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV 177 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI 177 (338)
++|+|+|++|+.+ ..+..+|+++|.+++.. ..++....++.+++.+++++++|++|||+|+|+|++|+| +||+
T Consensus 3 ~~~~~~~l~Rp~~---~~~~~~~~~~g~~~a~~--~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~--~Rpl 75 (276)
T PRK12882 3 TVRGYLELTRPVN---AVVAGVAAFIGAFIAGG--ILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRINRP--DRPI 75 (276)
T ss_pred CHHHHHHHHhhhH---HHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCC--CCCc
Confidence 4789999876654 45777789999998843 233443467788999999999999999999999998864 8999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626 178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGSL 256 (338)
Q Consensus 178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~ 256 (338)
++|++|++||+.++.++.++|+.+++.+|+.++.++..+++..++|+. +||++.+++.+.|...+..++.|+.+.+...
T Consensus 76 ~~G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~ 155 (276)
T PRK12882 76 PSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEG 155 (276)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999988888999996 8999888888887766656777776655333
Q ss_pred CHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019626 257 DLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALSGYNADIGIYLLLVV 326 (338)
Q Consensus 257 ~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~g~~~~lg~~y~~~~ 326 (338)
....+. +++..++|+. |+|+|+++|+||+|+++|+|++.++.. +.++.++...++.+....|+.|++.+
T Consensus 156 ~~~~~~-l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 234 (276)
T PRK12882 156 LLALLV-LFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGLWYLVLV 234 (276)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333333 5555556653 999999999999999999999888764 55666666666666778899999876
Q ss_pred HHHHHh
Q 019626 327 FCSSRL 332 (338)
Q Consensus 327 ~i~~~~ 332 (338)
.+.+.+
T Consensus 235 ~~~~~~ 240 (276)
T PRK12882 235 APADLV 240 (276)
T ss_pred HHHHHH
Confidence 665543
No 26
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.4e-31 Score=252.05 Aligned_cols=228 Identities=21% Similarity=0.209 Sum_probs=166.1
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccC-CC----
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMV-ER---- 171 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~-~r---- 171 (338)
+++++|+|++|++ ...+...|+++|.++|....+.+++...+++++++.++..++|++|||+|+|+|++| +|
T Consensus 3 ~~~~~~~~l~Rp~---~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAH---FLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4789999998754 333444555688888742122357765554455555666778999999999999864 32
Q ss_pred ----CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHhccCCcccCchh--HHHHHhHH
Q 019626 172 ----TRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNN----FSRILGASSLLLVFSYPLMKRFTFWP--QAYLGLTF 241 (338)
Q Consensus 172 ----t~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~----~~~~l~~~~l~~~~~Ys~lKr~~~~~--~~v~gl~~ 241 (338)
|++||+++|++|++||+.++.++.++|+.++..++. ..+.+++.+.+.++.|+..||.+.++ ++++|+.+
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~G~~~~ 159 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVKKRNQKYPVAQLLGRTDF 159 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 479999999999999999999999999888766544 45566777778899999888876665 44566778
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHH-HHHHHHHHHHHHHH
Q 019626 242 NWGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEW-TTGFGIACISSLAL 311 (338)
Q Consensus 242 al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~-l~~~~~~~i~~l~~ 311 (338)
++++++||. ++|+++...++ +++..++|+. |+|||+++|+||+|+++|++++.+ +..+..+.++ ..
T Consensus 160 ~~~~~~g~~-~~g~~~~~~~l-l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l--~~ 235 (297)
T PRK12871 160 TLFPAAGYL-CYGQPDMTALL-YMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFL--AA 235 (297)
T ss_pred HHHHHHHHH-HhCCCcHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHH--HH
Confidence 888888875 57888887765 6677788875 999999999999999999997764 4444444443 23
Q ss_pred HHHHhhhhHH-HHHHHHHHHH
Q 019626 312 SGYNADIGIY-LLLVVFCSSR 331 (338)
Q Consensus 312 ~g~~~~lg~~-y~~~~~i~~~ 331 (338)
.+...++|+. |+..+.+.+.
T Consensus 236 ~~~~~~~g~~~~~~~~~~~~~ 256 (297)
T PRK12871 236 IFFLRELGPIALYGFLAGFVL 256 (297)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 3556677866 4444344443
No 27
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=1.1e-30 Score=253.73 Aligned_cols=230 Identities=23% Similarity=0.320 Sum_probs=178.5
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHH----HHHHHHHHHHHHHHHHHHhhhcccccccccCCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFK----MMALFGCGALLLRGAGCTVNDLLDRDIDNMVER 171 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~----~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~r 171 (338)
.+++|+|+|++| |. +++.++|+++|.++|.. +..+++. .+..++++..+..+++|++|||+|+|+|++|+|
T Consensus 9 ~~~~k~~l~L~k---P~-t~l~~~p~~~g~~lA~g-~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~r 83 (331)
T PRK12392 9 VDKIRAHLELLD---PV-TWISVFPCLAGGVMASG-AMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEP 83 (331)
T ss_pred hHHHHHHHHHHC---HH-HHHHHHHHHHHHHHHcC-CCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCC
Confidence 468999999865 53 44689999999998852 1112221 122234444556678999999999999999999
Q ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHHhcc---C-CcccCchhHHHHHh
Q 019626 172 TRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNN--------FSRILGASSLLLVFSYP---L-MKRFTFWPQAYLGL 239 (338)
Q Consensus 172 t~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~--------~~~~l~~~~l~~~~~Ys---~-lKr~~~~~~~v~gl 239 (338)
| ||+++|++|++|++.++.++.++|++++..++. ..+..++++++++++|| + +||...+++..+|+
T Consensus 84 t--Rpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl 161 (331)
T PRK12392 84 T--RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGF 161 (331)
T ss_pred C--CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHH
Confidence 5 999999999999999999999998887766542 22334567788899996 2 78887778888899
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHH-HHHHHH
Q 019626 240 TFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGI-ACISSL 309 (338)
Q Consensus 240 ~~al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~-~~i~~l 309 (338)
++++.+.+++.+..|++++..++ +++..++|+. |+|+|++.|+||+|+++|++++.+++.+.. ++++.+
T Consensus 162 ~~~~~~~~~~~a~~g~~~~~~~~-l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~ 240 (331)
T PRK12392 162 SYGFITFLSANALFSDIRPEVVW-LAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVF 240 (331)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHH
Confidence 99888888888888888877655 5556666654 999999999999999999999998876544 777778
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhh
Q 019626 310 ALSGYNADIGIYLLLVVFCSSRLL 333 (338)
Q Consensus 310 ~~~g~~~~lg~~y~~~~~i~~~~~ 333 (338)
+..++..++++.||+.+.+.+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ 264 (331)
T PRK12392 241 AWLAWSWGFTVLMYFILVGLVLNI 264 (331)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888889988888776666554
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=6.4e-31 Score=249.40 Aligned_cols=226 Identities=21% Similarity=0.326 Sum_probs=173.1
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV 177 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI 177 (338)
++|+|+|++ ||+.+.+..++.+.|.+++.. +.+++...++++++.++.++++|++|||+|+|+|++|++ +||+
T Consensus 2 ~l~~~~~l~---Rp~~~~~~~~~~~~G~~la~~--~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~--~Rpl 74 (277)
T PRK12883 2 ELKAFIEIT---RPHNCILAGIVGILGSLVALG--GIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRP--NRPL 74 (277)
T ss_pred CHHHHHHHH---hhhHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCC--CCCC
Confidence 478899985 555666778888888888742 244555566778888899999999999999999998764 8999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626 178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGSL 256 (338)
Q Consensus 178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~ 256 (338)
++|++|+++|..++.++.++|+.+++.+|+..+.+++.+.+++++|+. +||.+.+++.+.|...+..++.|+.++ +++
T Consensus 75 ~sG~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~-~~~ 153 (277)
T PRK12883 75 PRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAV-GRI 153 (277)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHHHHh-ccc
Confidence 999999999999999999999999999999999888888888999997 899888888888887766667888776 667
Q ss_pred CHHHHHH--HHHHHHHHHh-----cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 019626 257 DLAVVFP--MYISGVFWTL-----DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALSGYNADIGIYLLLVVFC 328 (338)
Q Consensus 257 ~~~~ll~--l~~~~~~w~~-----D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~g~~~~lg~~y~~~~~i 328 (338)
++..++. .++..+.++. |+|+|+++|+||+|+++|+|++.++.. +.++.++...++.. .+.++.|+..+.+
T Consensus 154 ~~~~~~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~-~~~~~~y~~~~~~ 232 (277)
T PRK12883 154 GLAGYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVK-AGIGLGYLPIIIV 232 (277)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHH
Confidence 7654431 1222222322 999999999999999999998887764 44444444444433 3447778765554
Q ss_pred HHHh
Q 019626 329 SSRL 332 (338)
Q Consensus 329 ~~~~ 332 (338)
+..+
T Consensus 233 ~~~~ 236 (277)
T PRK12883 233 DAII 236 (277)
T ss_pred HHHH
Confidence 4443
No 29
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.98 E-value=2.1e-30 Score=250.38 Aligned_cols=195 Identities=21% Similarity=0.307 Sum_probs=158.2
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHH------HHHHHHHHHHHHHHHHHhhhcccccccccC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKM------MALFGCGALLLRGAGCTVNDLLDRDIDNMV 169 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~------~ll~~l~~~l~~~a~~~lND~~D~~iD~~~ 169 (338)
++++++|++++| |+.+...++|.+.|++.+.. .++.. ++.++++..++++++|++|||+|+|+|++|
T Consensus 24 ~~~~~~~~~l~R---P~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~ 96 (314)
T PRK07566 24 TSIWKARLQLMK---PITWFPPMWAFLCGAVSSGA----FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAIN 96 (314)
T ss_pred chHHHHHHHHhC---CcchHHHHHHHHHHHHHcCC----CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccC
Confidence 578999999865 56666777888878775421 22222 344667788899999999999999999998
Q ss_pred CCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc----CCcccCchhHHHHHhHH-HHH
Q 019626 170 ERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYP----LMKRFTFWPQAYLGLTF-NWG 244 (338)
Q Consensus 170 ~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys----~lKr~~~~~~~v~gl~~-al~ 244 (338)
+| +||+++|++|+++++.++.++.++|+.+++.+|+....+++.+++.+++|| .+||+++++++++|+++ +++
T Consensus 97 ~~--~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~ 174 (314)
T PRK07566 97 EP--YRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLP 174 (314)
T ss_pred CC--CCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHH
Confidence 76 899999999999999999999999999999999999999999998899999 38999999999998875 567
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH
Q 019626 245 ALLGWAAVKG-SLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG 300 (338)
Q Consensus 245 ~l~g~~a~~g-~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~ 300 (338)
++.|+.+.++ .+++..++ +++...+|.. |+|+|+++|+||+|+++|+|++.+++.
T Consensus 175 ~~~g~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~ 239 (314)
T PRK07566 175 WWAGAAAFGAGLPSWPIVI-LALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIAC 239 (314)
T ss_pred HHHHHHHhccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHH
Confidence 7888887764 56666554 3333333332 999999999999999999999888764
No 30
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.98 E-value=4e-30 Score=245.54 Aligned_cols=226 Identities=20% Similarity=0.112 Sum_probs=179.4
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccCCCCCCC
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDR--DIDNMVERTRLR 175 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~--~iD~~~~rt~~R 175 (338)
++|+|+|++ ||..+...++|+++|.++|...+ ..++..+++.+++++++++++|.+|||+|+ |+|+++.|+++|
T Consensus 2 ~~~~~~~~~---Rp~~~~~~~~p~l~G~~~a~~~~-~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELA---RPKTLPAAFAPVLVGTALAYWLG-SFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 478899985 56667789999999999985433 357777888999999999999999999998 689888888899
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhccCCc---ccCchhHHHHHhHHHHHH-HH
Q 019626 176 PVASGLLTPFQGLSFLGFQLLLGLGIL----LQLNNFSRILGASSLLLVFSYPLMK---RFTFWPQAYLGLTFNWGA-LL 247 (338)
Q Consensus 176 PI~sG~IS~~~A~~~~~~l~~lgl~l~----~~l~~~~~~l~~~~l~~~~~Ys~lK---r~~~~~~~v~gl~~al~~-l~ 247 (338)
|+++|++|++++..++.++.+++++++ ...++..+.+++++++.+++||..| ++..++|+..|++++... ..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~ 157 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLG 157 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999988877776655444 4457888888899999999999633 355689999888876554 44
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhh
Q 019626 248 GWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNAD 317 (338)
Q Consensus 248 g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~ 317 (338)
+++.+++++++..++ +.++..+|+. |+|+|+++|+||+|+++|+|++.+++ .+..++.++.....+.+.
T Consensus 158 ~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~ 236 (293)
T PRK06080 158 TYYLQAGTVDSAVFL-PALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGL 236 (293)
T ss_pred HHHHhcCCCCHHHHH-HHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577778888877665 4445555543 99999999999999999999988876 577777887777777777
Q ss_pred hhHHHHHHHHH
Q 019626 318 IGIYLLLVVFC 328 (338)
Q Consensus 318 lg~~y~~~~~i 328 (338)
+++.|+..++.
T Consensus 237 ~~~~~ll~ll~ 247 (293)
T PRK06080 237 ASPWGLLFLLS 247 (293)
T ss_pred hhHHHHHHHHH
Confidence 78777754443
No 31
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.97 E-value=7.8e-30 Score=251.19 Aligned_cols=216 Identities=25% Similarity=0.327 Sum_probs=162.2
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHH------HHHHHHHHHHHHHHHHHHhhhcccccccccC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFK------MMALFGCGALLLRGAGCTVNDLLDRDIDNMV 169 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~------~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~ 169 (338)
.+++|+|+|+ .||+.+...++|++.|.+.. |+. +|. ..++++++..++++++|++|||+|+|+|++|
T Consensus 82 ~~~~k~~l~L---~RP~t~~~~~~~v~~G~~~~---g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~ 154 (375)
T PLN00012 82 TDIWKIRLQL---TKPVTWPPLVWGVLCGAAAS---GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAIN 154 (375)
T ss_pred hHHHHHHHHH---hCHHHHHHHHHHHHHHHHHc---CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccC
Confidence 4789999997 56777888899999998842 322 332 2466778888999999999999999999999
Q ss_pred CCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHhcc----CCcccCchhHHHHH
Q 019626 170 ERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQL-------NNFSRILGASSLLLVFSYP----LMKRFTFWPQAYLG 238 (338)
Q Consensus 170 ~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l-------~~~~~~l~~~~l~~~~~Ys----~lKr~~~~~~~v~g 238 (338)
+| +||+++|++|+++++..+.++.++++.+++.+ |+..+++++++++.+++|| .+||++++++++.|
T Consensus 155 ~~--~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG 232 (375)
T PLN00012 155 EP--YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALG 232 (375)
T ss_pred CC--CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHH
Confidence 86 89999999999999998777777666665543 4567778888888899998 38999999988877
Q ss_pred hHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHH
Q 019626 239 LTFN-WGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISS 308 (338)
Q Consensus 239 l~~a-l~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~ 308 (338)
..++ +++..|+ +++|.+++..++ +++..++|.. |+|+|+++|+||+||++|++++.+++...+.....
T Consensus 233 ~~~~~lp~~~g~-a~~g~~s~~~il-lal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l 310 (375)
T PLN00012 233 ASYISLPWWAGQ-ALFGTLTPDVVV-LTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQL 310 (375)
T ss_pred HHHHHHHHHHHH-HHcCCCCHHHHH-HHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHH
Confidence 7654 4555555 668888887765 4444445543 99999999999999999999998887543333333
Q ss_pred HHHHHHHhhhhHHHH
Q 019626 309 LALSGYNADIGIYLL 323 (338)
Q Consensus 309 l~~~g~~~~lg~~y~ 323 (338)
. +.++....+..+|
T Consensus 311 ~-~~~~l~~~~~~~y 324 (375)
T PLN00012 311 S-VAGYLLAIGKPYY 324 (375)
T ss_pred H-HHHHHHHHhHHHH
Confidence 3 3334444433333
No 32
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.97 E-value=1.4e-29 Score=240.94 Aligned_cols=194 Identities=21% Similarity=0.279 Sum_probs=152.7
Q ss_pred HHHHHHccccchHHHHHHHHHHHHHHhhcCCCCC-CcHHHH-HHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccc
Q 019626 101 AYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHF-PDFKMM-ALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVA 178 (338)
Q Consensus 101 ~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~-~~l~~~-ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~ 178 (338)
+|+|+ .||+.+....+|++.|.+++....+. .++... +.++++..++++++|++|||+|+|+|++|++ +||++
T Consensus 2 ~~~~l---~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~--~Rpi~ 76 (283)
T TIGR01476 2 AHIEL---MKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEP--QRPIP 76 (283)
T ss_pred ceeEe---cCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCC--CCCCC
Confidence 45554 67777889999999999887322222 345433 3367788999999999999999999999986 89999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccC----CcccCchhHHHHHhHHH-HHHHHHHHHh
Q 019626 179 SGLLTPFQGLSFLGFQLLLGLGILLQLNNFS-RILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFN-WGALLGWAAV 252 (338)
Q Consensus 179 sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~-~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~a-l~~l~g~~a~ 252 (338)
+|++|+++++.++.++..+++++++.++.+. ..+++.+++.+++||. +||++++++++.|++++ .+...++.+.
T Consensus 77 ~G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~ 156 (283)
T TIGR01476 77 SGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIF 156 (283)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888876655 6778888888999994 89998899999888754 4555566554
Q ss_pred cCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHH
Q 019626 253 KGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGF 301 (338)
Q Consensus 253 ~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~ 301 (338)
+++++..++ ..+...+|.. |+|+|+++|+||+|+++|+|++.+++..
T Consensus 157 -~~~~~~~~~-~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~ 212 (283)
T TIGR01476 157 -APLTWQSVV-VALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVT 212 (283)
T ss_pred -CCCCHHHHH-HHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHH
Confidence 567776554 2333333321 9999999999999999999999888643
No 33
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.97 E-value=3.2e-29 Score=241.47 Aligned_cols=227 Identities=21% Similarity=0.181 Sum_probs=162.0
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcC-CCCCCcHHHHHHHHHHHHHHHHHHHH----hhhcccccccccCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAP-RGHFPDFKMMALFGCGALLLRGAGCT----VNDLLDRDIDNMVE 170 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~-~g~~~~l~~~ll~~l~~~l~~~a~~~----lND~~D~~iD~~~~ 170 (338)
.+.+++|+|++|++++.++.+. ...+..++.. .+..+++. .+...++.++.+.++|+ +|||+|+|+|++|+
T Consensus 10 ~~~l~~~~~l~Rp~t~igt~l~---~~~~~l~a~~~~~~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ink 85 (308)
T PRK12887 10 TSWLYALWKFSRPHTIIGTSLS---VLGLYLIAIAASSNTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINK 85 (308)
T ss_pred hHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC
Confidence 4678999999999999866554 4444444321 11112222 45566777777888888 99999999999998
Q ss_pred CCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHHHH
Q 019626 171 RTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWGAL 246 (338)
Q Consensus 171 rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~~l 246 (338)
+ +||+++|++|+++++.+..++.++|+++++.+|+..+.+++++.+++++||. +||++.++++..+...+..+.
T Consensus 86 p--~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~ 163 (308)
T PRK12887 86 P--HLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVN 163 (308)
T ss_pred C--CCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHH
Confidence 6 8999999999999999999999999999999999999999999999999994 899988887755444443333
Q ss_pred HH----HHHh---cCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHH
Q 019626 247 LG----WAAV---KGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSL 309 (338)
Q Consensus 247 ~g----~~a~---~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l 309 (338)
.| +.+. .+.++...++ +.+..++|+. |+|+|++.|+||+|+++|+|++.+++. +..++.+..
T Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~ 242 (308)
T PRK12887 164 LGLFLHFQWLLGGSVLIPPTVWL-LTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGM 242 (308)
T ss_pred HHHHHHHHHHHhccccCcHHHHH-HHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33 2221 2245555554 4445555553 999999999999999999999988763 444444444
Q ss_pred HHHHH--HhhhhHHHH-HHHHHH
Q 019626 310 ALSGY--NADIGIYLL-LVVFCS 329 (338)
Q Consensus 310 ~~~g~--~~~lg~~y~-~~~~i~ 329 (338)
++.+. ....+..|+ .+..+.
T Consensus 243 i~~~~~~~~~~~~~~~~~~~~~~ 265 (308)
T PRK12887 243 IAVGLLSLPTVNPAFLIVSHLIL 265 (308)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 43333 233445555 344433
No 34
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.97 E-value=1.7e-28 Score=236.33 Aligned_cols=195 Identities=22% Similarity=0.308 Sum_probs=154.7
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHH------HHHHHHHHHHHHHHHHHhhhcccccccccC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKM------MALFGCGALLLRGAGCTVNDLLDRDIDNMV 169 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~------~ll~~l~~~l~~~a~~~lND~~D~~iD~~~ 169 (338)
.+++|+|+|+ .||+.+...++|++.|...+ +++ ++.. ++.+++++.++++++|++|||+|+|+|+.|
T Consensus 13 ~~~~~~~~~l---~RP~~~~~~~~~~~~G~~~~---~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~ 85 (306)
T TIGR02056 13 TNIWKIRLQL---MKPITWIPLIWGVVCGAAAS---GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAIN 85 (306)
T ss_pred hhHHHHHHHH---cChHhhHHHHHHHHHHHHHc---CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC
Confidence 4678999998 55677778899999998853 222 3322 355567889999999999999999999999
Q ss_pred CCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHhcc----CCcccCchhHHHHH
Q 019626 170 ERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQL-------NNFSRILGASSLLLVFSYP----LMKRFTFWPQAYLG 238 (338)
Q Consensus 170 ~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l-------~~~~~~l~~~~l~~~~~Ys----~lKr~~~~~~~v~g 238 (338)
+| +||+++|++|+++++.++.++.++++++++.+ ++..+.+++++++.+++|| .+||+++++++..|
T Consensus 86 ~~--~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 86 EP--YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALG 163 (306)
T ss_pred CC--CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHH
Confidence 87 79999999999999999999888888877654 3567788888998899999 28898889888877
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH
Q 019626 239 LTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG 300 (338)
Q Consensus 239 l~~al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~ 300 (338)
..++..+..++.+++|++++..++ +++...+|+. |+|+|+++|+||+|+++|+|++.+++.
T Consensus 164 ~~~~~~~~~~~~a~~g~~~~~~~l-~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~ 233 (306)
T TIGR02056 164 ASYIALPWWAGHALFGELNPDIAV-LTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICV 233 (306)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHH
Confidence 665544444433667888887665 4444445543 999999999999999999999888865
No 35
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=2.7e-28 Score=233.86 Aligned_cols=228 Identities=18% Similarity=0.135 Sum_probs=169.9
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccCCCC--
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDR--DIDNMVERT-- 172 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~--~iD~~~~rt-- 172 (338)
+++|.|++. .||....++++|+++|.++|....+..++..+++++++++++|+++|++|||+|+ |.|++ +||
T Consensus 2 ~~~~~~~~~---~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~-~rt~~ 77 (296)
T PRK05951 2 QNAKLFFIF---TRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH-ETTGY 77 (296)
T ss_pred ccHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc-cccCC
Confidence 478999997 4577778999999999999875433468888999999999999999999999995 55654 455
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhccC---CcccCchhHHHHHhHHH-HH
Q 019626 173 RLRPVASGLLTPFQGLSFLGFQLLLGLGIL----LQLNNFSRILGASSLLLVFSYPL---MKRFTFWPQAYLGLTFN-WG 244 (338)
Q Consensus 173 ~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~----~~l~~~~~~l~~~~l~~~~~Ys~---lKr~~~~~~~v~gl~~a-l~ 244 (338)
++||+++|++|++|+..++.++.++++.++ +..++..+.+++++++.++.||. ..++.+++|...+++++ ..
T Consensus 78 ~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~ 157 (296)
T PRK05951 78 RQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHML 157 (296)
T ss_pred CCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHH
Confidence 689999999999999999888776665443 34577788899999999999972 33445789999988877 44
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHHHHH---HHHHHHHHH
Q 019626 245 ALLGWAAVKGSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTGFGI---ACISSLALS 312 (338)
Q Consensus 245 ~l~g~~a~~g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~~~~---~~i~~l~~~ 312 (338)
++..++++++.+++..++ ..+...+++ + |+|+|+++|+||+|+++|+|++.+...+.. +.++...+.
T Consensus 158 vlg~~~~~~~~~~~~~~~-~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a~~~~~~~~~~~~~~~~~~~~ 236 (296)
T PRK05951 158 VMGLIYVWLGNLSSPNLL-AGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGAALYIFALLSPYVILQILLIA 236 (296)
T ss_pred HHHHHHHHhCcccHHHHH-HHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555677888888877654 233322222 1 999999999999999999999944333333 344444445
Q ss_pred HHHhhhhHHHHHHHHHH
Q 019626 313 GYNADIGIYLLLVVFCS 329 (338)
Q Consensus 313 g~~~~lg~~y~~~~~i~ 329 (338)
++....++.+++++...
T Consensus 237 g~~~~~~l~~ll~lp~~ 253 (296)
T PRK05951 237 ILTPLISLWALLSLLVA 253 (296)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 55555555666555443
No 36
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=9.8e-27 Score=225.06 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=169.5
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccC--CCCCCC
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMV--ERTRLR 175 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~--~rt~~R 175 (338)
++|.|++++| |....++++|+++|.++|...++..++..+++++++++++|+++|++|||+|++.|+++ .++.+|
T Consensus 2 ~~~~~~~~~R---p~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~ 78 (317)
T PRK13387 2 SAKLFLKLVE---IHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGN 78 (317)
T ss_pred CHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcc
Confidence 3688998854 56667999999999999864333457878888999999999999999999997654444 334579
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHHHHH
Q 019626 176 PVASGLLTPFQGLSFLGFQLLLGLG----ILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWGALL 247 (338)
Q Consensus 176 PI~sG~IS~~~A~~~~~~l~~lgl~----l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~~l~ 247 (338)
++++|.+|++++...+.++.+++++ +++..|+..+.+|+++++.+++||. +||+ +++|+..++++++.++.
T Consensus 79 ~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~-gLGe~~v~i~~G~~~v~ 157 (317)
T PRK13387 79 GIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRM-PLGEIFSGLTMGFGIFL 157 (317)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccC-ccHHHHHHHHHHHHHHH
Confidence 9999999999999888887776666 6667899999999999999999983 5555 48999999888766554
Q ss_pred -HHHHhcCCCCHHHHH-------------------HHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHH
Q 019626 248 -GWAAVKGSLDLAVVF-------------------PMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWT 298 (338)
Q Consensus 248 -g~~a~~g~~~~~~ll-------------------~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l 298 (338)
+++.+++.+++..++ ...++..+.+ + |+|+|+++|+||+|+++|+|++.++
T Consensus 158 g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l 237 (317)
T PRK13387 158 LAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVL 237 (317)
T ss_pred HHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHH
Confidence 466777776654321 0122222211 1 9999999999999999999999988
Q ss_pred H-HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019626 299 T-GFGIACISSLALSGYNADIGIYLLLVV 326 (338)
Q Consensus 299 ~-~~~~~~i~~l~~~g~~~~lg~~y~~~~ 326 (338)
+ .+.+++.+..+.....+.+++.+++.+
T Consensus 238 ~~~l~~~a~l~~~~~v~~g~lp~~~ll~l 266 (317)
T PRK13387 238 FAILFYASYLAIAVIVLMGYISPWALLSF 266 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6 456666666665555555666655443
No 37
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.95 E-value=2.2e-28 Score=231.06 Aligned_cols=250 Identities=21% Similarity=0.316 Sum_probs=199.2
Q ss_pred CCCCcchhhhccccccccCCC--CCCcccccccceeccCCCCCCC-CCCCCCccc----ccchhcc-----cc-HHHHHH
Q 019626 36 NPKLNPHIAKLTNHDRWVPNS--EQNFRYVWVASICTTPSQSSVE-KETSSSNEK----SSWIDLY-----LP-RQARAY 102 (338)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~----~~~~~~~-----~~-~~l~~y 102 (338)
.|..+|++..|.+|++.++++ ++.+.-.....++...++.+.+ .+..||.+- ..|+... +| +..+.|
T Consensus 18 rp~p~p~~~~~~~~~~a~~~k~q~~~~~~~~~~~is~s~~d~~~~~a~~~pd~~v~~~~~~~~s~~l~ly~lp~k~~~~y 97 (409)
T KOG1380|consen 18 RPLPNPVLIPFSRETSAVNSKSQPTVMTTLTAKLISLSRKDANTVFATATPDSQVTATTGRWSSRPLALYTLPGKYARCY 97 (409)
T ss_pred cCCCCCccchhhhhhhcccccccCcccccccccceecccCccccchhhcCCCcceeecchhhcccchhhcCCCcchHHHH
Confidence 355568888999999999887 3333322222233333333211 112222221 1344332 23 456899
Q ss_pred HHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626 103 AKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL 182 (338)
Q Consensus 103 l~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I 182 (338)
+|| .||+.+.++++.++-|+++|.++ .++..+++..+|+.+..+++|.+|++++...|.+|+||+.||+++|+|
T Consensus 98 ~eL---sK~rLT~LVV~tt~~gYalap~p---~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~i 171 (409)
T KOG1380|consen 98 LEL---SKPRLTMLVVLTTMTGYALAPGP---FSFPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRI 171 (409)
T ss_pred HHh---cccceEEEEeeeccccccccccC---CCcchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCcc
Confidence 997 78888889999999999998643 467778899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH-HHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCCHHH
Q 019626 183 TPFQGLSFLGFQLLLGLGILLQ-LNNFSRILGASSL-LLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAV 260 (338)
Q Consensus 183 S~~~A~~~~~~l~~lgl~l~~~-l~~~~~~l~~~~l-~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~~~ 260 (338)
||.+|+.++.+....|+.+.++ +|+....+|...+ ++..+|+++||..+.+.+++++.+++|+++||+|.+|..++..
T Consensus 172 sp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTPlKrihiinTWvGavVGAIPPLMGwAAasg~l~~ga 251 (409)
T KOG1380|consen 172 SPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTPLKRIHIINTWVGAVVGAIPPLMGWAAASGLLDPGA 251 (409)
T ss_pred ChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccchhhhhhhhhHHHHHhccCCccchhhhhccCCCccH
Confidence 9999999999999999887765 8999999999988 6799999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCc
Q 019626 261 VFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGD 292 (338)
Q Consensus 261 ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~ 292 (338)
++ +....+.|++ -++|+.++|.+++++.--.
T Consensus 252 ~i-La~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~ 291 (409)
T KOG1380|consen 252 MI-LAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPG 291 (409)
T ss_pred HH-HHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccc
Confidence 87 7778889997 6778889999999998543
No 38
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.94 E-value=6.1e-25 Score=209.58 Aligned_cols=200 Identities=20% Similarity=0.103 Sum_probs=152.5
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCCCCccccCCCCHHHH
Q 019626 110 KPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDNMVERTRLRPVASGLLTPFQG 187 (338)
Q Consensus 110 rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~~~~rt~~RPI~sG~IS~~~A 187 (338)
||+....+++|+++|.++|...+ ..++..+++++++++++|+++|.+|||+|++ .|+.++.+..|++++|.+|++++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v 79 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREV 79 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHH
Confidence 57777899999999999997655 5688889999999999999999999999974 57654444589999999999999
Q ss_pred HHHHHHHHHHHHH----HHHHhhH------HHHHHHHHHHHHHHhccC-Cc--ccCchhHHHHHhHHHHH-HHHHHHHhc
Q 019626 188 LSFLGFQLLLGLG----ILLQLNN------FSRILGASSLLLVFSYPL-MK--RFTFWPQAYLGLTFNWG-ALLGWAAVK 253 (338)
Q Consensus 188 ~~~~~~l~~lgl~----l~~~l~~------~~~~l~~~~l~~~~~Ys~-lK--r~~~~~~~v~gl~~al~-~l~g~~a~~ 253 (338)
...+.++++++++ +.+..++ ..+.+|+++++.+++||. .+ ++..++|+..+++++.. ++.++++++
T Consensus 80 ~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~ 159 (284)
T TIGR00751 80 KTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQA 159 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9888777765544 4444565 456788899999999994 33 23457899999887754 455578889
Q ss_pred CCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHH
Q 019626 254 GSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLAL 311 (338)
Q Consensus 254 g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~ 311 (338)
|++++..++ ..++..+.+ + |+|+|+++|+||+|+++|+|++.++.. +...+.++.++
T Consensus 160 ~~~~~~~ll-~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~ 226 (284)
T TIGR00751 160 HRVDWVGIL-PAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV 226 (284)
T ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence 999987664 222222221 1 999999999999999999999988864 44444443333
No 39
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=3.8e-25 Score=210.57 Aligned_cols=202 Identities=19% Similarity=0.133 Sum_probs=145.2
Q ss_pred HHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcH--HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626 100 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDF--KMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV 177 (338)
Q Consensus 100 ~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l--~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI 177 (338)
+..-++.+..||..|...++|+.+|+..+ |+..+| ..+++++......+.+.|.+|||+|+|+|++|+| +||+
T Consensus 10 ~~l~~ll~~sRP~~wi~t~~~~~~G~~~~---g~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr--~~~i 84 (292)
T PRK13595 10 LPLRRLLLISRPALWVNTVGTLVTGVWLT---GHLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPR--KGGW 84 (292)
T ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHHHHh---cCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC--CCCC
Confidence 33334455689999999999999999766 333565 4566666777788999999999999999999999 5889
Q ss_pred ccCCCCHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHHHHHHH
Q 019626 178 ASGLLTPFQGLSFLGFQLLL----GLGILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWGALLGW 249 (338)
Q Consensus 178 ~sG~IS~~~A~~~~~~l~~l----gl~l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~~l~g~ 249 (338)
++|++|++++..+...+... ++.+++..|+.++.+...+.++.+.||. +|++..++.+.. ...+++...+
T Consensus 85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g~p~~~~- 162 (292)
T PRK13595 85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYALPLALP- 162 (292)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHHHHHHHH-
Confidence 99999999999875544443 5566677888888888888899999984 555555544432 3345544444
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHH
Q 019626 250 AAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLAL 311 (338)
Q Consensus 250 ~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~ 311 (338)
.++.|.......+ +..++|.. |+|+||+.|+||+|+++|+|++.+++ .+.+++.++...
T Consensus 163 ~~~~g~~~~~~~l---~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~ 231 (292)
T PRK13595 163 ALALGAPVPWPPL---LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP 231 (292)
T ss_pred HHHcCCcchHHHH---HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH
Confidence 4455554332221 23334443 99999999999999999999998887 445554444333
No 40
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.94 E-value=1.1e-25 Score=208.36 Aligned_cols=179 Identities=26% Similarity=0.343 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHH
Q 019626 116 LLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQL 195 (338)
Q Consensus 116 l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~ 195 (338)
+++.|+++|.+.+.. +..++..+....++.++.+.++|.+||+.|+|.|++++++++||+++|+++++++...+.++.
T Consensus 3 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~ 80 (257)
T PF01040_consen 3 LSFLPVLAGLALASG--GPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILL 80 (257)
T ss_pred HHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHH
Confidence 567788888555532 234676777788888899999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcc---CCcccCchhHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHH
Q 019626 196 LLGLGILLQLNNFSRILGASSLLLVFSYP---LMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYIS--GVF 270 (338)
Q Consensus 196 ~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys---~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~~~ll~l~~~--~~~ 270 (338)
++++.+++..++..+.+.++..+.+++|+ .+||++.+++++.|++++..+..|+.+++++.+...++ ++.. .+.
T Consensus 81 ~l~l~l~~~~~~~~~~~~~~~~~~~~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (257)
T PF01040_consen 81 LLGLLLALLLGPWFLLILLLGFLLGLLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFL-LAIFFFLLI 159 (257)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHH-HHHHHHHHH
Confidence 99999998899988888888888889999 58999988999999999999999999988776655443 2222 111
Q ss_pred HH------h-cHHHHHhcCCceeeEeeCcchHHH
Q 019626 271 WT------L-DKEDDLKVGVKSTALRFGDSSKEW 297 (338)
Q Consensus 271 w~------~-D~e~D~~~G~kTlav~~G~k~a~~ 297 (338)
+. . |+|+|+++|+||+|+++|++++..
T Consensus 160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 11 2 999999999999999999999887
No 41
>PRK08238 hypothetical protein; Validated
Probab=99.93 E-value=4.2e-25 Score=224.09 Aligned_cols=191 Identities=25% Similarity=0.260 Sum_probs=154.8
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR 175 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R 175 (338)
+.++++|++++|++++.++.+..+|.+++..+. ....+...++.+++.+++.+++|++||++|+|+|++|+||++|
T Consensus 188 ~~~~~~~~~l~Rp~q~~kn~l~~~p~l~a~~~~----~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~R 263 (479)
T PRK08238 188 PARLRTWLKALRVHQWAKNLLVFVPLLAAHQFG----DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRR 263 (479)
T ss_pred chHHHHHHHHhCCcHHHHHHHHHHHHHHhcccC----ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCC
Confidence 578999999999999999988888887653221 1122445667888888999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626 176 PVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKG 254 (338)
Q Consensus 176 PI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g 254 (338)
|++||++|+++|+.++.+++++|+++++.+|+.++.+.+..+++.+.||+ +||++.++++++|+++++++++|+.+.+
T Consensus 264 PlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ys~~lKr~~~~~~~~la~~~~lr~~~G~~a~~- 342 (479)
T PRK08238 264 PFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTLAYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIG- 342 (479)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHhcCCccccchHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999999999999776666677788899997 9999999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHHHh-------cHHHHHhcCCceeeEeeCcc
Q 019626 255 SLDLAVVFPMYISGVFWTL-------DKEDDLKVGVKSTALRFGDS 293 (338)
Q Consensus 255 ~~~~~~ll~l~~~~~~w~~-------D~e~D~~~G~kTlav~~G~k 293 (338)
++...|+..+...+++.. |++.++..|. +-.+.-|..
T Consensus 343 -~~~s~wll~~~~~~~l~la~~KR~~El~~~~~~~~-~r~~~~~Y~ 386 (479)
T PRK08238 343 -VALSFWLLAFSMFFFLSLALVKRYTELRRALQRGK-PKIAGRGYR 386 (479)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC-ccccCCCCC
Confidence 566666533444444443 8888878776 434444443
No 42
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.93 E-value=6.2e-24 Score=201.84 Aligned_cols=225 Identities=17% Similarity=0.119 Sum_probs=171.1
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccc--cCCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDN--MVER 171 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~--~~~r 171 (338)
.++.+.|+|++| |+.+..++.|.++|.++|...+...++..++++++++.+++++.|..|||+|++ .|. ..++
T Consensus 5 ~~~~~~wl~~~r---P~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~ 81 (303)
T COG1575 5 TSKTQLWLELAR---PKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRL 81 (303)
T ss_pred cHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccc
Confidence 356789999865 455568999999999999854433578889999999999999999999999964 565 4456
Q ss_pred CCCCccccCCCCHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHhccC-Ccc--cCchhHHHHHhHHHHH
Q 019626 172 TRLRPVASGLLTPFQGLSFLGFQLLLG----LGILLQLNNFSRILGASSLLLVFSYPL-MKR--FTFWPQAYLGLTFNWG 244 (338)
Q Consensus 172 t~~RPI~sG~IS~~~A~~~~~~l~~lg----l~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr--~~~~~~~v~gl~~al~ 244 (338)
++++-+.+.+++++.++.....+.... +.++...+|..+.+|+++++.+++|+. .|+ +.+++|+..|+++++.
T Consensus 82 ~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l 161 (303)
T COG1575 82 KQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPL 161 (303)
T ss_pred cccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHH
Confidence 678899999999999888776655444 334456688888899999999999996 554 5678999999998755
Q ss_pred -HHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHH
Q 019626 245 -ALLGWAAVKGSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSG 313 (338)
Q Consensus 245 -~l~g~~a~~g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g 313 (338)
+..+++.+++++++..++ ..++....+ + |+|+|+++|++|+||++|++.+..+. .+...+..+.++..
T Consensus 162 ~v~g~~yiqt~~~~~~~ll-~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~ 240 (303)
T COG1575 162 IVLGAYYIQTGRLSWAILL-PSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFV 240 (303)
T ss_pred HHHHHHHHhcccchHHHHH-HHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHH
Confidence 455688899999988665 222222211 1 99999999999999999999987764 55555566555554
Q ss_pred HHhhhhHHHHH
Q 019626 314 YNADIGIYLLL 324 (338)
Q Consensus 314 ~~~~lg~~y~~ 324 (338)
......++++.
T Consensus 241 i~~~~~~~~ll 251 (303)
T COG1575 241 ILGLFPVWGLL 251 (303)
T ss_pred HHHhchHHHHH
Confidence 55555555544
No 43
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.93 E-value=5.7e-24 Score=204.56 Aligned_cols=217 Identities=19% Similarity=0.045 Sum_probs=160.4
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDNMVERTR 173 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~~~~rt~ 173 (338)
+++++.|++. .||.....+++|+++|.++|...++..++..+++++++++++|+++|.+|||+|++ .|+. ++
T Consensus 9 ~~~~~~w~~a---~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~-- 82 (304)
T PRK07419 9 PSRRKLWLAA---IKPPMYSVAIMPILVGTAWALGETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN-KF-- 82 (304)
T ss_pred ccHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc--
Confidence 4678999887 56778889999999999999754445688889999999999999999999999975 7884 22
Q ss_pred CCccccCCCCHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHH-
Q 019626 174 LRPVASGLLTPFQGLSFLGFQLLLGLG----ILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWG- 244 (338)
Q Consensus 174 ~RPI~sG~IS~~~A~~~~~~l~~lgl~----l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~- 244 (338)
...+++..+++++...+.++.+++++ +++..||..+.+|+++++.+++||. +|+ .+++|+..+++++..
T Consensus 83 -~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y-~gLGE~~v~l~~G~l~ 160 (304)
T PRK07419 83 -HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGY-QGLGEPLCFLAFGPLA 160 (304)
T ss_pred -cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCC-CCchHHHHHHHHHHHH
Confidence 23446666789988887776655554 4455688888999999999999983 444 457999999887754
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHHHH
Q 019626 245 ALLGWAAVKGSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALSGY 314 (338)
Q Consensus 245 ~l~g~~a~~g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~g~ 314 (338)
+..++++++|.+++..++ ..++..+.+ + |+|+|+++|+||+|+++|+|++.+++. +...+.++.+....
T Consensus 161 v~g~~yv~t~~~~~~~~~-~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~ 239 (304)
T PRK07419 161 VAAALYSQTPSWSLIPLA-ASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVL 239 (304)
T ss_pred HHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999987664 222211111 1 999999999999999999999998874 44444444443333
Q ss_pred HhhhhHH
Q 019626 315 NADIGIY 321 (338)
Q Consensus 315 ~~~lg~~ 321 (338)
.+.+.++
T Consensus 240 ~g~~p~~ 246 (304)
T PRK07419 240 LGFWPWT 246 (304)
T ss_pred HhhhHHH
Confidence 3334443
No 44
>PLN02922 prenyltransferase
Probab=99.93 E-value=1.7e-23 Score=202.23 Aligned_cols=207 Identities=18% Similarity=0.052 Sum_probs=149.8
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCCC
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDNMVERTRL 174 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~~~~rt~~ 174 (338)
+++|.|++.+ ||......++|+++|.++|....+..+|..+++++++++++|++.|.+|||+|++ .|+.++.+..
T Consensus 13 ~~~~~w~~a~---Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAI---KLPMYSVALVPLTVGAAAAYLQTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHh---CcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 5789999985 5667779999999999999754345688889999999999999999999999964 6775332223
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHH---H--hhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHHH
Q 019626 175 RPVASGLLTPFQGLSFLGFQLLLGLGILL---Q--LNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWGA 245 (338)
Q Consensus 175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~---~--l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~~ 245 (338)
|++ | |++++...+.++.++++...+ . .+|..+++|+++++.+++||. +| +.+++|+..+++++..+
T Consensus 90 ~~~--~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~-y~gLGE~~v~i~fG~l~ 164 (315)
T PLN02922 90 NLV--G--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLS-YKGLGEPLCFAAFGPLA 164 (315)
T ss_pred Ccc--c--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccc-cCcchHHHHHHHHHHHH
Confidence 443 3 999998887777666553221 2 367788899999999999983 33 45689999888876544
Q ss_pred HH-HHHHhcC----------CCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH-HHHH
Q 019626 246 LL-GWAAVKG----------SLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIA 304 (338)
Q Consensus 246 l~-g~~a~~g----------~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~ 304 (338)
+. .|.+++| .+++..++ ..++..+++ + |+|+|+++|+||+|+++|+|++.++.. +...
T Consensus 165 v~g~y~~~~~~~~~~~~~~~~~~~~~~l-~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ 243 (315)
T PLN02922 165 TTAFYLALASGAGGSEMAILPLTPTVLS-ASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLL 243 (315)
T ss_pred HHHHHHHhcccccccccccccccHHHHH-HHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHH
Confidence 44 4667666 23444443 323322222 1 999999999999999999999988864 4444
Q ss_pred HHHHHHHH
Q 019626 305 CISSLALS 312 (338)
Q Consensus 305 ~i~~l~~~ 312 (338)
+.+..+..
T Consensus 244 ~y~~~i~~ 251 (315)
T PLN02922 244 LYSLLAAL 251 (315)
T ss_pred HHHHHHHH
Confidence 44444433
No 45
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=1.6e-23 Score=199.42 Aligned_cols=197 Identities=18% Similarity=0.118 Sum_probs=135.2
Q ss_pred HHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHH----HhhhcccccccccCCCCCCCccccC
Q 019626 105 LARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGC----TVNDLLDRDIDNMVERTRLRPVASG 180 (338)
Q Consensus 105 L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~----~lND~~D~~iD~~~~rt~~RPI~sG 180 (338)
+.|+.||+.|....+|+.+|+.+| ++.++| .+++. +++++...| .+|||+|+|.|++|+|+..| .|
T Consensus 4 ~~~~~rP~~wi~~a~pf~~g~~la---~~~~~~-~~l~~---~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~---~g 73 (282)
T PRK13105 4 LLLSSRPISWINTAYPFAAAYLLA---GGEIDW-LFVVG---TVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV---EG 73 (282)
T ss_pred HHHhcccHHHhccHHHHHHHHHHH---CCCCCh-HHHHH---HHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC---CC
Confidence 345688999999999999988888 234555 33333 334444444 55999999999999997655 48
Q ss_pred CCCHHHHHHHHH----HHHH-HHHHHHHHhhHHHHHHHHHHHHHHHhccCCc-c--cCchhHH-HHHhHHHHHHHHHHHH
Q 019626 181 LLTPFQGLSFLG----FQLL-LGLGILLQLNNFSRILGASSLLLVFSYPLMK-R--FTFWPQA-YLGLTFNWGALLGWAA 251 (338)
Q Consensus 181 ~IS~~~A~~~~~----~l~~-lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lK-r--~~~~~~~-v~gl~~al~~l~g~~a 251 (338)
.++++|+..... +..+ .++.+....++.++.++.++++.++.||..| | +.++++. ..+..+..+.+.|...
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~ 153 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVL 153 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 899999843333 3233 3444444458888889999999999999644 2 2334444 2333333445666555
Q ss_pred hcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHH
Q 019626 252 VKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALS 312 (338)
Q Consensus 252 ~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~ 312 (338)
.++.+++..++ +.....+|.. |+|+||++|+||+|+++|+|++.+++ .++++++++....
T Consensus 154 ~~~~~~~~~~l-~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~ 223 (282)
T PRK13105 154 AGAPFTAALWA-VLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLAL 223 (282)
T ss_pred hhccccHHHHH-HHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667766554 4445555543 99999999999999999999999886 5666666665543
No 46
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=2.3e-23 Score=199.57 Aligned_cols=173 Identities=18% Similarity=0.154 Sum_probs=141.1
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP 176 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP 176 (338)
+++++|+|++|++++..+.+...|.+++..... ...+...++.+++.+++++++|++||++|+|+|++|+||++||
T Consensus 9 ~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~~----~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RP 84 (295)
T PRK12324 9 NLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLLN----PGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRP 84 (295)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCC
Confidence 579999999999998888777777766644321 1134455667777788899999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCC
Q 019626 177 VASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGS 255 (338)
Q Consensus 177 I~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~ 255 (338)
+++|++|+++|+.++.++.++|+++++.+|+.++.+.+..+++.+.||. +||++.++.+..+.++++.++.|+.+.+.+
T Consensus 85 lasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~d~l~va~~~~lr~~~G~~a~~~~ 164 (295)
T PRK12324 85 IASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLLVYLVLNLAYSFKLKHQPVLDVFCIASGFVLRAIAGGVAIGVP 164 (295)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999998999887777777788899997 899999999999999999999999887765
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 019626 256 LDLAVVFPMYISGVFWTL 273 (338)
Q Consensus 256 ~~~~~ll~l~~~~~~w~~ 273 (338)
++...++..+....+|..
T Consensus 165 ~s~wll~~~~~~~lfla~ 182 (295)
T PRK12324 165 LSPWLLLCTALLSLFLAA 182 (295)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 554433222244566665
No 47
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.92 E-value=2.9e-23 Score=198.19 Aligned_cols=198 Identities=20% Similarity=0.110 Sum_probs=146.9
Q ss_pred ccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCCCCccccCCCCHHH
Q 019626 109 DKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDNMVERTRLRPVASGLLTPFQ 186 (338)
Q Consensus 109 ~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~~~~rt~~RPI~sG~IS~~~ 186 (338)
.||.....+++|+++|.++|...++..|+..+++++++++++|+++|.+|||+|++ .|+.+..+ ..++..++++
T Consensus 6 ~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~----~~~~~~~~~~ 81 (285)
T TIGR02235 6 IKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHS----IVNLTGSRSL 81 (285)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCC----cccccCcHHH
Confidence 57888889999999999999754445688889999999999999999999999965 58743222 2233345788
Q ss_pred HHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHH-HHHHHHHHhcCCCC
Q 019626 187 GLSFLGFQLLLGLG----ILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNW-GALLGWAAVKGSLD 257 (338)
Q Consensus 187 A~~~~~~l~~lgl~----l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al-~~l~g~~a~~g~~~ 257 (338)
+...+.++.+++++ +.+..+|..+.+|+++++.+++||. +|+ .+++|+..+++++. .+..+++.++|.++
T Consensus 82 v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y-~gLGE~~v~l~~G~l~v~g~~yvqt~~~~ 160 (285)
T TIGR02235 82 VFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGY-QGLGEPICWLCFGPLAIAAALYAQSQSFS 160 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCC-CCccHHHHHHHHHHHHHHHHHHHhCCcCc
Confidence 77776666555544 4455678888899999999999983 444 56799999988774 44556888899999
Q ss_pred HHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHH
Q 019626 258 LAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALS 312 (338)
Q Consensus 258 ~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~ 312 (338)
+..++ ..++..+.+ + |+|+|+++|+||+|+++|+|++.++.. +...+.++.+..
T Consensus 161 ~~~~l-~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~ 224 (285)
T TIGR02235 161 LIPWK-ASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIA 224 (285)
T ss_pred HHHHH-HHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHH
Confidence 88765 222222221 1 999999999999999999999988864 444444444333
No 48
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=8.2e-23 Score=194.75 Aligned_cols=208 Identities=23% Similarity=0.225 Sum_probs=135.5
Q ss_pred cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHH--HHHHHHHhhhcccccccccCCCCC
Q 019626 96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALL--LRGAGCTVNDLLDRDIDNMVERTR 173 (338)
Q Consensus 96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l--~~~a~~~lND~~D~~iD~~~~rt~ 173 (338)
+.++|.|+++ .||+.+...+.|+++|.++|...+. ..+...++++++.++ .+...|.+|||+|+|+|+.|+|++
T Consensus 5 ~~~~~~l~~l---~RP~~~~~~~~p~l~G~~lA~~~~~-~~~~~~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 5 GDRLRYLLVL---SRPRFWLYLAGPVVVGVAYAADSVA-DLFSPAAVALFAYFLFPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred HHHHHHHHHH---hCccchHHHHHHHHHHHHHHhccCc-ccccHHHHHHHHHHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence 3567777665 7899999999999999999975321 112223333444333 122334589999999999999987
Q ss_pred -CCccc-cCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---C-CcccCchhHHHHHhHHHHHHHH
Q 019626 174 -LRPVA-SGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYP---L-MKRFTFWPQAYLGLTFNWGALL 247 (338)
Q Consensus 174 -~RPI~-sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys---~-lKr~~~~~~~v~gl~~al~~l~ 247 (338)
.||++ +|+.....+ ......+++.+....++....+.+..++..+.|| . +|+++..+..+.|+ +.++.+.
T Consensus 81 ~~r~~~~s~~~~~~~~---~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~~~~~~~ 156 (282)
T PRK12875 81 REREVRYRGDRRVLVA---VALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-YILPGVA 156 (282)
T ss_pred CCCCccHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-HHHHHHH
Confidence 57776 332222222 2223344555555555544434445568889998 2 66665433333344 3577788
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHH
Q 019626 248 GWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGY 314 (338)
Q Consensus 248 g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~ 314 (338)
+|++++|++++..++ +..++|+. |+|+|+++|+||+|+++|+|++.+++ .+++++.++....+.
T Consensus 157 ~y~~~tg~~~~~~l~---~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~ 230 (282)
T PRK12875 157 AYALVSGSLPPLLAV---AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDL 230 (282)
T ss_pred HHHHHcCCCcHHHHH---HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999988765433 23344443 99999999999999999999988665 567777776666543
No 49
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=8.3e-23 Score=194.10 Aligned_cols=221 Identities=18% Similarity=0.162 Sum_probs=148.2
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626 98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV 177 (338)
Q Consensus 98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI 177 (338)
-+++++++.|..+-. ........+..... ..++......++++++.+.++|++|||+|+|+|++|+| +||.
T Consensus 3 ~~~~~~~~~~~~~~~---~a~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~--~R~~ 73 (285)
T PRK12872 3 LLFAFLKLFRYGNLL---IAALGQSLVYMASL----LLGLPISWLLLLITFLIAAAVYIINYLTDLEEDIINKP--ERVV 73 (285)
T ss_pred HHHHHHHHHHHccHH---HHHHHHHHHHHHHH----HHcChhHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCC--chHH
Confidence 478899988877542 22222222211100 01222345677788899999999999999999999988 7888
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccC-----CcccCchhHHHHHhHHHHH-HHHHHH
Q 019626 178 ASGLLTPFQGLSFLGFQLLLGLGIL-LQLNNFSRILGASSLLLVFSYPL-----MKRFTFWPQAYLGLTFNWG-ALLGWA 250 (338)
Q Consensus 178 ~sG~IS~~~A~~~~~~l~~lgl~l~-~~l~~~~~~l~~~~l~~~~~Ys~-----lKr~~~~~~~v~gl~~al~-~l~g~~ 250 (338)
++++...+.+..+..+...+|+.+. ...|+..+.+++++.+.+++|+. +||.+.+++++.|...+.. ++.+++
T Consensus 74 ~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~ 153 (285)
T PRK12872 74 FSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVY 153 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 8554444444444444444444443 23488888888888888999984 5677778899988876644 455666
Q ss_pred HhcCCCCHHHHH---HHHHHHHHHHh-----cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHH
Q 019626 251 AVKGSLDLAVVF---PMYISGVFWTL-----DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIY 321 (338)
Q Consensus 251 a~~g~~~~~~ll---~l~~~~~~w~~-----D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~ 321 (338)
+.++.++...++ .++...+.|+. |+|+|+++|+||+|+++|+|++.++. .+.++.++.+++....+..++.
T Consensus 154 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (285)
T PRK12872 154 YYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLL 233 (285)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence 666656655443 23344555554 99999999999999999999888776 5677777777777666555555
Q ss_pred HHHHHH
Q 019626 322 LLLVVF 327 (338)
Q Consensus 322 y~~~~~ 327 (338)
++..+.
T Consensus 234 ~~~~~~ 239 (285)
T PRK12872 234 LLVLLL 239 (285)
T ss_pred HHHHHH
Confidence 554433
No 50
>PLN02878 homogentisate phytyltransferase
Probab=99.90 E-value=2e-22 Score=190.26 Aligned_cols=176 Identities=18% Similarity=0.235 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-H
Q 019626 138 KMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGAS-S 216 (338)
Q Consensus 138 ~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~-~ 216 (338)
...+...+++++++.....+|||+|+|+||+||| +||||||++|+++|+.+..++.++|+++++.+|++.+...+. +
T Consensus 23 ~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP--~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~~l~~al~~~ 100 (280)
T PLN02878 23 TGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKP--YLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVS 100 (280)
T ss_pred HHHHHHHHHHHhhhhheechhhhhhhcccccCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 3455677888899999999999999999999999 899999999999999999999999999999999876555544 5
Q ss_pred HHHHHhccC-CcccCchhHHH-HHhHH----HHHHHHHHH-----HhcC---CCCHHHHH-HHHHHHHHHHh-------c
Q 019626 217 LLLVFSYPL-MKRFTFWPQAY-LGLTF----NWGALLGWA-----AVKG---SLDLAVVF-PMYISGVFWTL-------D 274 (338)
Q Consensus 217 l~~~~~Ys~-lKr~~~~~~~v-~gl~~----al~~l~g~~-----a~~g---~~~~~~ll-~l~~~~~~w~~-------D 274 (338)
+++++.|+. +|......+.+ .+.|+ +...-+||+ .+.| .++...++ .++...+.+.. |
T Consensus 101 ~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~D 180 (280)
T PLN02878 101 FVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180 (280)
T ss_pred HHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcC
Confidence 588899983 32221111111 22222 111112332 1113 22323332 12222223322 9
Q ss_pred HHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHH
Q 019626 275 KEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYN 315 (338)
Q Consensus 275 ~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~ 315 (338)
+|+|++.|+||+|+++|++++.+++ .+..++.+...+.|..
T Consensus 181 ieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~ 222 (280)
T PLN02878 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGAS 222 (280)
T ss_pred chhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998886 3555555544444443
No 51
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.90 E-value=3.5e-22 Score=190.01 Aligned_cols=212 Identities=15% Similarity=0.076 Sum_probs=141.4
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhh----cCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCC
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMA----APRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERT 172 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA----~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt 172 (338)
++++-|.+=+=+..|++.... +..+...+- .....+......++.+++.++..+++|++|||+|+|+|++|+|
T Consensus 3 k~~~iy~~e~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P- 79 (299)
T PRK13592 3 KRLNVYLKEMYPLLPRLILSL--TLFFEIYMITLLSNHISSFRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFP- 79 (299)
T ss_pred hhHHHHHHHhccchhhhHHHH--HHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCC-
Confidence 456677665444455433222 222222211 1112223344566677778888999999999999999999998
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-----cC-CcccCchhHHHHHhHHHHHHH
Q 019626 173 RLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSY-----PL-MKRFTFWPQAYLGLTFNWGAL 246 (338)
Q Consensus 173 ~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Y-----s~-lKr~~~~~~~v~gl~~al~~l 246 (338)
+||+|||++|+++|..++.++.++++.+.... ...+...+..+.| +. +||....+++..+...+.+++
T Consensus 80 -~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i~~~~i~~lY~~lm~a~~~K~~~l~gNl~Va~ltg~~f~ 153 (299)
T PRK13592 80 -HRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNVGWFLFLYIYGTLMSFWFFKRDKIQNSLPLALVTHNPVM 153 (299)
T ss_pred -CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcccCCCcchhhhhhccchhh
Confidence 89999999999999999999877776665443 2233344455666 64 999999999998887776664
Q ss_pred HH---------HHHhcCCCCHHH--HH---HHHHHHHHHHh-----cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHH
Q 019626 247 LG---------WAAVKGSLDLAV--VF---PMYISGVFWTL-----DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACI 306 (338)
Q Consensus 247 ~g---------~~a~~g~~~~~~--ll---~l~~~~~~w~~-----D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i 306 (338)
.| ..+ .|...... ++ ..|+...-+.+ | |||++ |.+|+|+++|.|++.+++ ++.++.+
T Consensus 154 ~g~~~~~~~fg~~~-~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v 230 (299)
T PRK13592 154 MILNLYTISFVCYK-YNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDI 230 (299)
T ss_pred hchhhhhhhhhhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHH
Confidence 43 111 12211111 22 12223333343 8 78885 599999999999988876 6788888
Q ss_pred HHHHHHHH-HhhhhH
Q 019626 307 SSLALSGY-NADIGI 320 (338)
Q Consensus 307 ~~l~~~g~-~~~lg~ 320 (338)
+.+.++.+ .+.+|+
T Consensus 231 ~~s~lp~~~~g~~g~ 245 (299)
T PRK13592 231 LTNFALLWNISHVGV 245 (299)
T ss_pred HHhhHHHHHhhhhHH
Confidence 88888988 777777
No 52
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.86 E-value=1.1e-19 Score=174.14 Aligned_cols=166 Identities=17% Similarity=0.102 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Q 019626 145 CGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYP 224 (338)
Q Consensus 145 l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys 224 (338)
+.+.+...++|++|||+|+|+|+.|++ +||++ +++.++.++.+..++|+.+++..|+. .+++++.+.+++|+
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P--~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~ll~~l~g~lYS 136 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRS--ELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLAFLPFITGYLYS 136 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCc--ccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHhc
Confidence 334566899999999999999999987 89886 89999999999999999999999974 36778888899999
Q ss_pred C----------CcccCchhHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------h-cHHHHHhcCCceee
Q 019626 225 L----------MKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWT------L-DKEDDLKVGVKSTA 287 (338)
Q Consensus 225 ~----------lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~------~-D~e~D~~~G~kTla 287 (338)
. .|+.+++++++.|+..+.....+....++.+-....+.++....++. + |+|+|+++|+||+|
T Consensus 137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLP 216 (307)
T PRK13591 137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSLIPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLP 216 (307)
T ss_pred CCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEE
Confidence 4 34566788999988877644322111122211111111111111111 1 99999999999999
Q ss_pred EeeCcchHHHHH-HHHHHHHHHHHHHHHHhhh
Q 019626 288 LRFGDSSKEWTT-GFGIACISSLALSGYNADI 318 (338)
Q Consensus 288 v~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~l 318 (338)
+++|++++.++. ...+++.++..+....+.+
T Consensus 217 V~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l 248 (307)
T PRK13591 217 VSLGEQKTRNLLLGIHLFSHLVLGIALIFGVI 248 (307)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988876 4455444444444343333
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.35 E-value=3.3e-13 Score=123.38 Aligned_cols=197 Identities=19% Similarity=0.164 Sum_probs=138.5
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCC--cHHHHHHHHHHHHHHHHHHHHhhhccc--ccccccCCCC
Q 019626 97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFP--DFKMMALFGCGALLLRGAGCTVNDLLD--RDIDNMVERT 172 (338)
Q Consensus 97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~--~l~~~ll~~l~~~l~~~a~~~lND~~D--~~iD~~~~rt 172 (338)
+|.+.|+-. .||+....++.|+..|.++|....+.. .+..+.++.++.+.+++++|.+|.|+| +++|++. .
T Consensus 59 ~k~~sylla---lrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~kk--a 133 (359)
T KOG4581|consen 59 MKCASYLLA---LRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKK--A 133 (359)
T ss_pred HHHHHHHhh---hcccccccccchHhhhhHHHHhhccccchhHHHHHHHHhhheeeecccchhhhhhhhhhcccccc--c
Confidence 477888765 467778899999999999997432222 344556677777889999999999999 4788864 3
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHHH---HHhhHHHH-HHH---HHHHHHHHhccC---CcccCchhHHH-HHhHH
Q 019626 173 RLRPVASGLLTPFQGLSFLGFQLLLGLGIL---LQLNNFSR-ILG---ASSLLLVFSYPL---MKRFTFWPQAY-LGLTF 241 (338)
Q Consensus 173 ~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~---~~l~~~~~-~l~---~~~l~~~~~Ys~---lKr~~~~~~~v-~gl~~ 241 (338)
.+|.++...+.+.++..++.++..+|+..+ +.+++.-+ -++ ..++--.+.|+- .|... ++.++ +-..+
T Consensus 134 ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyia-lgdliili~fg 212 (359)
T KOG4581|consen 134 DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIA-LGDLIILILFG 212 (359)
T ss_pred cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecccceEEEe-ccCEEEEEeec
Confidence 489999999999999999999888776643 33444322 112 223334678883 45443 33333 33345
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH
Q 019626 242 NWGALLGWAAVKGSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG 300 (338)
Q Consensus 242 al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~ 300 (338)
.+.++++++.++|++++..+. ..++..+-+ . |.|.||.+|+-|+++.+|...+..++.
T Consensus 213 piavlfaf~~q~g~l~~~~l~-yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~ 279 (359)
T KOG4581|consen 213 PIAVLFAFAIQTGHLAIFPLG-YAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYA 279 (359)
T ss_pred hHHHHHHHHHhcCceeEEeeh-heeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHH
Confidence 677889999999998765543 112211211 1 999999999999999999988877764
No 54
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=92.77 E-value=1.5 Score=42.23 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 019626 144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNN 207 (338)
Q Consensus 144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~ 207 (338)
.++..+...+...+||+-|.|-||++.+ |.+|. ++.++.+..++.++.+++.++....++
T Consensus 166 ~~~~~~~~~a~~ii~~irDie~Dr~~G~---~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~~ 225 (282)
T PRK13105 166 LAAFFLWGMASHAFGAVQDVVADREAGI---ASIAT-VLGARRTVRLAVGLYAAAAVLMLALPW 225 (282)
T ss_pred HHHHHHHHHHHHHHHhCcchHhHHHcCC---ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455778889999999999998643 33332 566788888877777777665554443
No 55
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=91.70 E-value=2.7 Score=40.43 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 019626 144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLN 206 (338)
Q Consensus 144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~ 206 (338)
+++..+...+-..+||+.|+|-|++..+ |.++. ++.++.+..+..++.+++..+....+
T Consensus 171 ~~a~~l~~~~~~~in~i~Die~D~~aGi---~Tlav-~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 171 VAGGWLWAMGMHTFSAIPDIEPDRAAGI---RTTAT-VLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHcCC---ccchh-hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444577777799999999999997643 33332 55566677666666665555544444
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=91.55 E-value=2.6 Score=39.94 Aligned_cols=37 Identities=19% Similarity=0.031 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
.+..++.....+++||.-|+|-|+++.++ +=|..-|+
T Consensus 167 ~~~~fl~~~~~~~~~d~~D~e~D~~~G~~-Tlpv~lG~ 203 (285)
T PRK12872 167 AVFIFLKSFIREIVFDIKDIEGDRKSGLK-TLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHcCCc-ccchhcch
Confidence 34444556777789999999999987552 45555555
No 57
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=90.79 E-value=1.8 Score=41.18 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
..+..++.+.+-..+||..|+|-|++..++ .=|+.-|+
T Consensus 163 l~~~~~~w~~~~~~i~~~~D~e~D~~~G~~-tlpv~~G~ 200 (282)
T TIGR01475 163 LGIGVGFWIAGFDLIYAIQDYEFDRKNGLH-SIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHcCCC-chHHHhch
Confidence 445556677788899999999999987653 56776773
No 58
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=89.71 E-value=4.2 Score=39.61 Aligned_cols=30 Identities=20% Similarity=0.009 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccCCC
Q 019626 142 LFGCGALLLRGAGCTVNDLLDRDIDNMVER 171 (338)
Q Consensus 142 l~~l~~~l~~~a~~~lND~~D~~iD~~~~r 171 (338)
+..+.+.+..+..+..|+..|.|.|+++.|
T Consensus 180 l~slp~gil~~~Il~aNNirDie~D~~~gk 209 (303)
T COG1575 180 LPSLPVGILIANILLANNLRDIEEDIRNGK 209 (303)
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHhcCC
Confidence 344555566778888999999999999876
No 59
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.52 E-value=2.6 Score=40.28 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626 142 LFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL 182 (338)
Q Consensus 142 l~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I 182 (338)
+..+..++.+.+-..+|++.|+|-|+++.++ .=|+.-|+-
T Consensus 169 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-tl~v~~G~~ 208 (285)
T PRK12847 169 LLYIGCIFWTIGYDTIYAYQDKKDDLKIGVK-STAIYFGNK 208 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCCc-hhHHHhccc
Confidence 4455566777888899999999999987653 556666653
No 60
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=89.32 E-value=4.3 Score=38.37 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 145 CGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 145 l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
+..++.+.+-+..||+.|+|-|++..++ .=|..-|+
T Consensus 162 ~~~~~~~~~~~~~~~~~D~e~D~~~G~~-Tl~v~~G~ 197 (279)
T PRK12884 162 AMAFLMTLGREIMKDIEDVEGDRLRGAR-TLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHcCCe-eechHhcH
Confidence 4445666777899999999999987542 34544444
No 61
>PRK13591 ubiA prenyltransferase; Provisional
Probab=89.21 E-value=2.3 Score=41.42 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=19.0
Q ss_pred HhhhcccccccccCCCCCCCccccCC
Q 019626 156 TVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 156 ~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
.+||+.|.|-|+++.++ +=|+.=|+
T Consensus 197 iindirDiEGDr~~G~k-TLPV~lG~ 221 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIK-TLPVSLGE 221 (307)
T ss_pred HHHHhhhhHhHHHcCCe-eEEEEECH
Confidence 68999999999987652 45665554
No 62
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=88.96 E-value=6.1 Score=38.44 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHH
Q 019626 149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLL 196 (338)
Q Consensus 149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~ 196 (338)
+........||+-|+|.|+++.|. +=|. ++.++.+..+...+.+
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~ly~~l~~ 228 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKR-SPIV---RLGTKRGAQLLPWIVG 228 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCc-ceee---eechHhHHHHHHHHHH
Confidence 456777889999999999998652 3344 3444555444443333
No 63
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=88.78 E-value=5.6 Score=37.95 Aligned_cols=52 Identities=21% Similarity=0.080 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG 198 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lg 198 (338)
..+...+........||+.|+|.|+++.++ +=|. ++.++.+..+...+..++
T Consensus 173 ~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~-Tl~v---~lG~~~a~~~~~~l~~~~ 224 (293)
T PRK06080 173 PALPCGLLIGAVLLANNIRDIETDRENGKN-TLAV---RLGDKNARRLHAALLALA 224 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHcCCe-eEEe---eECcHhHHHHHHHHHHHH
Confidence 344445667778899999999999987552 3344 333444444444433333
No 64
>PLN02922 prenyltransferase
Probab=88.46 E-value=4.7 Score=39.40 Aligned_cols=46 Identities=17% Similarity=0.058 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHH
Q 019626 147 ALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLL 196 (338)
Q Consensus 147 ~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~ 196 (338)
..+........||+.|+|.|+++.|. +=|. ++.++.+..+...+..
T Consensus 197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~l~~~l~~ 242 (315)
T PLN02922 197 VGLTTTLILFCSHFHQIDGDRAVGKM-SPLV---RLGTEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHHHHHccCcchhhHHHcCcc-ceee---EEChHHHHHHHHHHHH
Confidence 33556677889999999999998662 3344 3445555544444333
No 65
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=88.31 E-value=5.7 Score=38.42 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL 182 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I 182 (338)
..+..++.+..-...||+.|+|-|+++.++ .=|+.-|+-
T Consensus 180 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-Tlpv~~G~~ 218 (297)
T PRK12871 180 YMVFFYPWTMAHLGLNDFIDLENDRARGMK-SIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHcCCe-eeeeeechH
Confidence 445566778888999999999999987653 567766653
No 66
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=87.96 E-value=2.6 Score=41.13 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG 198 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lg 198 (338)
..+...+..+.....||+.|+|.|+++.|. +=|. ++.++.+..+..++..++
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~-TL~v---~lG~~~a~~l~~~l~~~a 245 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRY-TLVY---YIGREKGVVLFAILFYAS 245 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCe-eeee---eEcHHhHHHHHHHHHHHH
Confidence 344445666777899999999999998652 3343 444555555544444443
No 67
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=86.33 E-value=11 Score=36.33 Aligned_cols=48 Identities=10% Similarity=-0.067 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 019626 147 ALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG 198 (338)
Q Consensus 147 ~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lg 198 (338)
..+...+....||.-|+|.|+++.|. +=|. ++.++.+..+...+..++
T Consensus 170 ~gl~~~~iL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~l~~~l~~~~ 217 (285)
T TIGR02235 170 VGLATTLILFCSHFHQVEDDLAHGKR-SPVV---RLGTKLAAKIVPWVISLS 217 (285)
T ss_pred HHHHHHHHHHhcCCccchhHHHcCCc-ceeh---eecHHhHHHHHHHHHHHH
Confidence 33566788889999999999988652 3333 444555555544444433
No 68
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=85.98 E-value=7.8 Score=37.67 Aligned_cols=32 Identities=25% Similarity=0.132 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
+...+...+||+.|+|-|++..++ .=|+.-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~-Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLR-SLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCc-ccceeEcH
Confidence 445666899999999999987542 45665554
No 69
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=85.04 E-value=9.3 Score=36.46 Aligned_cols=40 Identities=15% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCC
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLT 183 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS 183 (338)
.+++.++.+.+-..+|++.|+|-|++...+ +=|+.-|+-.
T Consensus 165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~-tlpv~~G~~~ 204 (281)
T TIGR01474 165 LYLANILWTLGYDTIYAMQDKEDDIKIGVK-STALRFGDNT 204 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHcCCC-cccHHhhhhh
Confidence 456667778888899999999999986542 5666667533
No 70
>PLN00012 chlorophyll synthetase; Provisional
Probab=84.79 E-value=13 Score=37.26 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 147 ALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 147 ~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
.++...+-...||+-|+|-|++...+ .=|+.-|+
T Consensus 261 ~~l~~lai~ivnd~~Die~Dr~aG~~-TLpV~~G~ 294 (375)
T PLN00012 261 YSIAGLGIAIVNDFKSIEGDRALGLQ-SLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHcCCc-ccceeech
Confidence 34566778889999999999987432 45665665
No 71
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=83.78 E-value=35 Score=32.86 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
..+..++.+.+-..+|++.|+|-|++...+ .=|+.-|+
T Consensus 172 l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~-slpv~~G~ 209 (291)
T PRK12874 172 LALGVMFWVAGFDLLYSLQDMEFDKKRGLH-SIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHcCCC-cccHHhhh
Confidence 345556778888899999999999876542 45666665
No 72
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=83.73 E-value=13 Score=35.87 Aligned_cols=37 Identities=19% Similarity=0.045 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHH
Q 019626 149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLS 189 (338)
Q Consensus 149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~ 189 (338)
+........||.-|+|.|+++.+ |.++. ++.++.+..
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~---~Tlav-~lG~~~a~~ 218 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGI---PTLAV-IFGRRGAAL 218 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCC---eeeee-eEcHhhHHH
Confidence 44567788999999999998765 33333 555666633
No 73
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=81.89 E-value=13 Score=35.57 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 136 DFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 136 ~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
++..+ +..+..++.+.+-..+|++.|+|-|++...+ +=|+.-|+
T Consensus 158 ~~~~~-ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~-sl~v~~G~ 201 (284)
T PRK12888 158 SWPAV-LLGLAVGLWIGGFDLIYACQDAEVDRRIGVR-SVPARFGV 201 (284)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHCCCc-CcchhhCc
Confidence 44333 3455566777888999999999999976542 45555554
No 74
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=81.15 E-value=17 Score=34.91 Aligned_cols=47 Identities=21% Similarity=0.083 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 019626 148 LLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG 198 (338)
Q Consensus 148 ~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lg 198 (338)
.+...+....||.-|+|.|+++.|. +=|. ++.++.+..+...+...+
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~-Tl~v---~lG~~~a~~l~~~l~~~a 220 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKN-TLAV---RLGDARTRMYHQGLLAVA 220 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCE-eehh---hcchHhHHHHHHHHHHHH
Confidence 3455777789999999999988652 2333 455566655544444333
No 75
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=80.24 E-value=7.2 Score=37.02 Aligned_cols=37 Identities=19% Similarity=0.077 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
++..++.+.+-..+||+-|+|.|++..++ .=|+.-|+
T Consensus 160 ~~~~f~~~~~~~~~~~~~D~~~D~~~G~~-tlpv~~G~ 196 (279)
T PRK09573 160 FLCAFFSTWSREIVKDIEDIEGDLKENVI-TLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHCCCc-cccHHhhH
Confidence 34445556677788999999999976553 45665553
No 76
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=80.01 E-value=7.7 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.072 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccC
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASG 180 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG 180 (338)
..+..++...+-..+||+.|+|-|+++.++ +=|+.=|
T Consensus 187 ~~~~~~~~~~~~~l~~di~D~egD~~~Gi~-Tlav~lG 223 (308)
T PRK12887 187 LTLFVLVFTFAIAIFKDIPDMEGDRQYQIT-TFTLRLG 223 (308)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHcCCc-chhHHHh
Confidence 334445666778889999999999987652 3444333
No 77
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=79.96 E-value=25 Score=33.25 Aligned_cols=47 Identities=19% Similarity=0.070 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHH
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGF 193 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~ 193 (338)
..+..++...+-..+||+.|.|-|++...+ .=|+.-|+ +.+......
T Consensus 162 l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~-tlpv~~G~---~~t~~~~~~ 208 (276)
T PRK12882 162 LFALAALATLAREIIKDVEDIEGDRAEGAR-TLPILIGV---RKALYVAAA 208 (276)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHcCCc-cccHHhhH---HHHHHHHHH
Confidence 344445556777899999999999987542 44554444 444444333
No 78
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=79.74 E-value=8.1 Score=38.00 Aligned_cols=38 Identities=16% Similarity=-0.034 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626 144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL 182 (338)
Q Consensus 144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I 182 (338)
.+..++...+-..+||..|+|-|++..++ +=|+.=|+=
T Consensus 186 ~~~~~l~~~~~~~i~d~~D~egD~~~G~k-TlpV~~G~~ 223 (331)
T PRK12392 186 AGLNFFMAIALIIMNDFKSVEGDKEGGLK-SLTVMIGAK 223 (331)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHcCCe-eeEeEEcHh
Confidence 33445666777889999999999987542 556655544
No 79
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=79.54 E-value=8.4 Score=37.30 Aligned_cols=42 Identities=14% Similarity=-0.088 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHH
Q 019626 148 LLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGF 193 (338)
Q Consensus 148 ~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~ 193 (338)
.+...+-...||+.|+|.|+++.++ +=|. ++.++.+......
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~-Tlpv---~lG~~~a~~~~~~ 234 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQ-SLPV---AFGIETAAWICVG 234 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCc-Ccch---hcChHHHHHHHHH
Confidence 3456777789999999999987542 3444 3444555444443
No 80
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=79.47 E-value=25 Score=33.46 Aligned_cols=40 Identities=20% Similarity=0.053 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccC
Q 019626 140 MALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASG 180 (338)
Q Consensus 140 ~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG 180 (338)
..+.+++..+...+-.+++|+.|+|-|+++..+ +-|..-|
T Consensus 169 ~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~-s~~~~~G 208 (289)
T COG0382 169 AWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLK-SLPVLFG 208 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchHhcCCc-chHHHhC
Confidence 344556666777888899999999999987653 3444334
No 81
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=79.16 E-value=33 Score=33.08 Aligned_cols=41 Identities=10% Similarity=-0.021 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCC
Q 019626 142 LFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLT 183 (338)
Q Consensus 142 l~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS 183 (338)
+..++.++-..+=.++.++.|+|-|++..- ++=|+.=|+=.
T Consensus 163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv-~S~a~~fG~~~ 203 (286)
T PRK12895 163 IIFISSSLWIAGFDIIYVIPDIEYDKINGL-KTIMNTYGIKN 203 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHcCC-CchHHHHCCcc
Confidence 455666777777889999999999997643 24455445433
No 82
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=78.56 E-value=9.7 Score=36.18 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
+...+...+||+.|+|-|+++.++ +=|+.-|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~-Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLR-SLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCc-CcceEEcH
Confidence 445566789999999999987542 45555555
No 83
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=78.43 E-value=8 Score=36.62 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 148 LLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 148 ~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
++...+-...||.-|+|-|++..++ .=|+.-|+
T Consensus 164 fl~~~~~~~~~~~~D~e~D~~~G~~-Tlpv~~G~ 196 (277)
T PRK12883 164 FLVNVAREIMKDIEDIEGDKAKGAK-TLPIIIGK 196 (277)
T ss_pred HHHHHHHHHHhhhhhhccHHHcCCc-CcChHhcH
Confidence 4445566678999999999987653 45665554
No 84
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=77.76 E-value=31 Score=33.56 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626 136 DFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL 182 (338)
Q Consensus 136 ~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I 182 (338)
++..+ +.+++.++.+..-..++++.|+|-|++... +.=|..-|+=
T Consensus 191 ~~~~~-~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi-~slpv~~G~~ 235 (314)
T PRK12878 191 SLAAV-LLYAGSIAWTIGYDTIYAHQDKEDDALIGV-KSTARLFGDH 235 (314)
T ss_pred chHHH-HHHHHHHHHHHHHHHHHHhhhHhhHHHcCC-cccchHhchh
Confidence 44333 344556677788888899999999998653 2556666663
No 85
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=76.02 E-value=9.3 Score=37.06 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCC
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLT 183 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS 183 (338)
..++.++...+-.++|+..|+|-|++...+ +=|+.=|+-+
T Consensus 182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~-Slpv~~G~~a 221 (300)
T PRK13106 182 FVIGTILWAAGFDLYNHIPDAEFDREMGLH-SFAVVLGKWA 221 (300)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHCCCC-ccHHHHhhhH
Confidence 444566677777899999999999976542 5566566333
No 86
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=75.80 E-value=27 Score=33.55 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHH
Q 019626 142 LFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPF 185 (338)
Q Consensus 142 l~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~ 185 (338)
+..+..++.+.+-..+|++.|+|-|++...+ .=|+.-|+=+..
T Consensus 170 ~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~-slav~~G~~~~~ 212 (290)
T PRK12870 170 LLWAATVFWTLGFDTVYAMSDREDDLRIGVN-SSAIFFGRYAPE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHCCCc-chhHHhccccHH
Confidence 3455667888889999999999999986543 456655655443
No 87
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=73.26 E-value=31 Score=32.82 Aligned_cols=42 Identities=21% Similarity=0.079 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCC
Q 019626 141 ALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLT 183 (338)
Q Consensus 141 ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS 183 (338)
.+.++..++-+..-...|++.|+|-|++...+ .=|+.-|+=.
T Consensus 165 ~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-tlpv~~G~~~ 206 (282)
T PRK12848 165 WLLFLANILWTVAYDTQYAMVDRDDDLKIGIK-STAILFGRYD 206 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHhhHHHcCCc-cccHHhcccc
Confidence 34556667777888899999999999987542 5566666543
No 88
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=67.59 E-value=42 Score=32.23 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626 142 LFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL 182 (338)
Q Consensus 142 l~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I 182 (338)
+.++..++.+.+-..+|++.|+|-|++...+ .=|+.-|+-
T Consensus 166 ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~-slpv~~G~~ 205 (291)
T PRK12886 166 LLGLAVLFWVAGFDILYALQDLEFDRKEGLH-SIPAKLGVN 205 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhHHHcCCc-CcchhcCch
Confidence 3444455556666689999999999976542 567766663
No 89
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=67.50 E-value=38 Score=30.78 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=14.8
Q ss_pred cHHHHHhc-CCceeeEeeCcch
Q 019626 274 DKEDDLKV-GVKSTALRFGDSS 294 (338)
Q Consensus 274 D~e~D~~~-G~kTlav~~G~k~ 294 (338)
|.|.|+.+ +.+.-|+.-|+-+
T Consensus 47 D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 47 DYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred hhhcCcccccccCcchhHHHHh
Confidence 99999986 4566666666644
No 90
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=66.69 E-value=79 Score=30.65 Aligned_cols=37 Identities=22% Similarity=0.071 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
.++.++-+..=.++=...|+|-|++..-+ .=|..-|+
T Consensus 176 ~~~~~~W~~~~d~iyA~qD~edD~~~Gv~-slpv~~G~ 212 (294)
T PRK12873 176 WLATLLWTFGFDTVYAMADRRDDAKIGLN-SSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHcCCc-ccchhcCh
Confidence 35566667777788888899999986542 56766775
No 91
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=64.25 E-value=60 Score=30.86 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=15.9
Q ss_pred cHHHHHhcCC-ceeeEeeCcch
Q 019626 274 DKEDDLKVGV-KSTALRFGDSS 294 (338)
Q Consensus 274 D~e~D~~~G~-kTlav~~G~k~ 294 (338)
|+|-|++..+ +.-|+.-|+-+
T Consensus 60 D~~iD~~~~Rt~~RPl~sG~is 81 (279)
T PRK12869 60 ERDIDKVMSRTSKRPTPVGLVN 81 (279)
T ss_pred hcCCCCCCCCCCCCCcCCCCcC
Confidence 9999998765 56777777743
No 92
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=57.67 E-value=1.5e+02 Score=28.39 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
.++..++.+..-...|.+.|+|-|++... +.=|+.-|+
T Consensus 172 l~~~~~lw~~~~~~~~~~~d~~D~~~~G~-~tlpv~~G~ 209 (296)
T PRK04375 172 LFLIIFLWTPPHFWALAIFRKDDYAAAGI-PMLPVVKGI 209 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHcCC-CccceeeCH
Confidence 44555666666677778889888865432 245655554
No 93
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=57.39 E-value=1.4e+02 Score=28.67 Aligned_cols=39 Identities=13% Similarity=-0.083 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626 143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL 182 (338)
Q Consensus 143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I 182 (338)
..++.++-+..=.++-...|+|-|++...+ .=|+.-|+-
T Consensus 171 l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~-sl~v~~G~~ 209 (289)
T PLN02809 171 LYASGVCWTLVYDTIYAHQDKEDDLKVGVK-STALRFGDD 209 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhHHhCCCc-ccchhhcHH
Confidence 344444445555577778899999987542 456655654
No 94
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=51.05 E-value=24 Score=36.70 Aligned_cols=89 Identities=21% Similarity=0.098 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHH
Q 019626 142 LFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILL-------QLNNFSRILGA 214 (338)
Q Consensus 142 l~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~-------~l~~~~~~l~~ 214 (338)
+...+.+++..++-+-+|++|.-+|+.. ++++++--+||. ..+..+++..++. ++--+.+.++.
T Consensus 357 LstaaGL~l~iasavsHDiY~~vik~~a--se~~~v~vaRi~-------~v~~~vva~~lgi~~~gnVaflVa~AF~lAa 427 (529)
T COG4147 357 LSTAAGLLLVIASAVSHDLYAMVIKKGA--TEKKEVRVARIA-------VVILGVVAILLGILPPGNVAFLVALAFALAA 427 (529)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHhCCCC--CccceehhHHHH-------HHHHHHHHHHheecCCccHHHHHHHHHHHHH
Confidence 3445556777888889999999888762 334444333333 3333333333322 12122333444
Q ss_pred HHHHHHHhccC-CcccCchhHHHHHh
Q 019626 215 SSLLLVFSYPL-MKRFTFWPQAYLGL 239 (338)
Q Consensus 215 ~~l~~~~~Ys~-lKr~~~~~~~v~gl 239 (338)
.+.+-...++. -||.+..+-+..++
T Consensus 428 Sa~fPvivlglfWKr~n~~GAi~G~~ 453 (529)
T COG4147 428 SANFPVIVLGLFWKRLNTAGAIAGML 453 (529)
T ss_pred HcccchhhHHHHHhhccHHhHHHHHH
Confidence 44455566664 78887766555433
No 95
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=48.09 E-value=1.9e+02 Score=27.30 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=12.9
Q ss_pred hhcccccccccCCCCCCCccccCC
Q 019626 158 NDLLDRDIDNMVERTRLRPVASGL 181 (338)
Q Consensus 158 ND~~D~~iD~~~~rt~~RPI~sG~ 181 (338)
+.+.|+|-|++..++ .=|+.-|+
T Consensus 178 ~a~~~~~dd~~~G~~-tl~v~~G~ 200 (280)
T TIGR01473 178 LALKYKDDYRAAGIP-MLPVVKGE 200 (280)
T ss_pred HHHHhhhhHHHCCCc-cCCcccCH
Confidence 345778888655432 44554554
No 96
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=44.10 E-value=2.8e+02 Score=27.01 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhcccccccccCCCCCCCccccCCCC
Q 019626 149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLT 183 (338)
Q Consensus 149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS 183 (338)
+..++-.++.+..|+|-|++..- +.=|+.-|+-+
T Consensus 183 ~~~~g~DiiYa~qD~e~D~~~Gl-~Slpv~fG~~~ 216 (300)
T PRK12876 183 MIIAANDIIYAIQDLEFDRKEGL-FSIPARFGEKK 216 (300)
T ss_pred HHHHHHHHHHHHcCHhhHHHcCC-ccchHHHCchh
Confidence 33344556778999999997643 24566555543
No 97
>PLN02878 homogentisate phytyltransferase
Probab=42.22 E-value=1.5e+02 Score=28.68 Aligned_cols=40 Identities=13% Similarity=-0.015 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHH
Q 019626 149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLG 192 (338)
Q Consensus 149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~ 192 (338)
++..+-..+||+-|.|=|++...+ +=|+. +.++.+..++.
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~-Tlpv~---lG~~~~~~i~~ 206 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIR-SFSVR---LGQKRVFWLCV 206 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCc-eechh---hChHHHHHHHH
Confidence 444566699999999999987552 44553 33444444433
No 98
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=40.67 E-value=2.4e+02 Score=27.31 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=15.4
Q ss_pred cHHHHHhcCC-ceeeEeeCcc
Q 019626 274 DKEDDLKVGV-KSTALRFGDS 293 (338)
Q Consensus 274 D~e~D~~~G~-kTlav~~G~k 293 (338)
|+|-|++..+ +.-|+--|+-
T Consensus 71 D~~iD~~~~Rt~~RPlpsG~i 91 (306)
T PRK13362 71 DRDIDAKMQRTRNRVTVTGEI 91 (306)
T ss_pred HhCcCCCCCCCCCCCCCCCCC
Confidence 9999988665 4678878874
No 99
>PF14256 YwiC: YwiC-like protein
Probab=39.45 E-value=2.4e+02 Score=23.89 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q 019626 113 GTWLLAWPCMWSI 125 (338)
Q Consensus 113 ~~~l~~iP~~~g~ 125 (338)
.|.+..+|.+.|.
T Consensus 7 AW~Ml~~P~l~G~ 19 (129)
T PF14256_consen 7 AWAMLLVPFLLGM 19 (129)
T ss_pred hHHHHHHHHHHHH
Confidence 4678888999998
No 100
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=36.13 E-value=4.1e+02 Score=25.70 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=14.2
Q ss_pred cHHHHHhc-CCceeeEeeCc
Q 019626 274 DKEDDLKV-GVKSTALRFGD 292 (338)
Q Consensus 274 D~e~D~~~-G~kTlav~~G~ 292 (338)
|+|.|+++ ..|.-|..-|+
T Consensus 70 D~e~Dr~~prk~~RPlasG~ 89 (295)
T PRK12324 70 DVEADRLHPTKRNRPIASGV 89 (295)
T ss_pred HHHhhccCCCCCCCCCCCCc
Confidence 99999996 44556666676
No 101
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=35.22 E-value=2.8e+02 Score=28.93 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=13.6
Q ss_pred eeCcchHHHHHHH-HHHHHHHHHHHHHH-hhhhHH
Q 019626 289 RFGDSSKEWTTGF-GIACISSLALSGYN-ADIGIY 321 (338)
Q Consensus 289 ~~G~k~a~~l~~~-~~~~i~~l~~~g~~-~~lg~~ 321 (338)
..|+-.+.+.... ...++. .++.|.. ...|..
T Consensus 340 ~~GRv~si~~~~~~g~~~lG-sll~G~la~~~g~~ 373 (524)
T PF05977_consen 340 VRGRVFSIYQMVFFGGMPLG-SLLWGFLADHFGVR 373 (524)
T ss_pred HHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCHH
Confidence 3455555554433 333333 3444443 334543
No 102
>PRK13595 ubiA prenyltransferase; Provisional
Probab=32.82 E-value=4.7e+02 Score=25.40 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHH
Q 019626 146 GALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNF 208 (338)
Q Consensus 146 ~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~ 208 (338)
+.++...+..++=|+.|.|-||+..-+ +=|+ ++.++.+..++..+.+++..+...+++.
T Consensus 177 a~~~w~~g~dii~ai~DiegDr~~Gi~-Slpv---~lG~r~a~~~a~~~~~~a~~~~~~~~~~ 235 (292)
T PRK13595 177 ALMAWSVGKHAFDAAQDIPADRAAGTR-TVAT---TLGVRGTALYALAWFLLAGALLWPVSRL 235 (292)
T ss_pred HHHHHHHHHHHHHhccChHhHHHcCCe-echH---HhCcHhHHHHHHHHHHHHHHHHHHhcch
Confidence 334555788899999999999986431 2333 4556777777777777777766665543
No 103
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.53 E-value=2.7e+02 Score=23.19 Aligned_cols=35 Identities=29% Similarity=0.139 Sum_probs=25.0
Q ss_pred ccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 019626 165 IDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILL 203 (338)
Q Consensus 165 iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~ 203 (338)
-|+.|+. |.+=+=+|..|....+.+...+|+.++.
T Consensus 5 p~RLN~e----PvV~rGlT~~El~~~~~~~~~~gl~~g~ 39 (111)
T TIGR03750 5 PDRLNRE----PVVFRGLTADELGVAAGVGLAAGLVLGL 39 (111)
T ss_pred chhhcCC----CceecccCHHHHHHHHHHHHHHHHHHHH
Confidence 3777644 6666678899988888777777766553
No 104
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.59 E-value=37 Score=27.77 Aligned_cols=21 Identities=24% Similarity=0.225 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHhhhccc
Q 019626 317 DIGIYLLLVVFCSSRLLSLVI 337 (338)
Q Consensus 317 ~lg~~y~~~~~i~~~~~~~~~ 337 (338)
+-.|+|++|+++.++.+|++|
T Consensus 14 g~sW~~LVGVv~~al~~SlLI 34 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLI 34 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHH
Confidence 446999999999999999877
No 105
>PLN02776 prenyltransferase
Probab=24.47 E-value=7e+02 Score=24.74 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=18.3
Q ss_pred CCcccc--CCCCHHHHHHHHHHHHHHHHHHH
Q 019626 174 LRPVAS--GLLTPFQGLSFLGFQLLLGLGIL 202 (338)
Q Consensus 174 ~RPI~s--G~IS~~~A~~~~~~l~~lgl~l~ 202 (338)
.-|++. |+-+..+...+...+..++++..
T Consensus 186 mlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~ 216 (341)
T PLN02776 186 MLSLADATGRRTALVALRNCLYLAPLGFLAY 216 (341)
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665 45567777777766666666543
No 106
>PRK13592 ubiA prenyltransferase; Provisional
Probab=24.29 E-value=6.8e+02 Score=24.47 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=14.5
Q ss_pred cHHHHHhcCCceeeEeeCc
Q 019626 274 DKEDDLKVGVKSTALRFGD 292 (338)
Q Consensus 274 D~e~D~~~G~kTlav~~G~ 292 (338)
|+|.|+. +++.-|+--|+
T Consensus 70 D~EIDrI-N~P~RPLPsG~ 87 (299)
T PRK13592 70 DYETDRR-LFPHRALPSGR 87 (299)
T ss_pred hHHHhhh-cCCCCCCCcCC
Confidence 9999965 47888888887
No 107
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=22.16 E-value=1.9e+02 Score=25.93 Aligned_cols=51 Identities=20% Similarity=0.045 Sum_probs=26.3
Q ss_pred CCccccCCCCHHH--HHHHHH----HHHHHHHHHHHH---hhHHHHHHHHHHHHHHHhcc
Q 019626 174 LRPVASGLLTPFQ--GLSFLG----FQLLLGLGILLQ---LNNFSRILGASSLLLVFSYP 224 (338)
Q Consensus 174 ~RPI~sG~IS~~~--A~~~~~----~l~~lgl~l~~~---l~~~~~~l~~~~l~~~~~Ys 224 (338)
+....+|.+.+.. |..+.. .+.++|+++... .|++.+.+.+++=+.+++|-
T Consensus 68 ~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lLsPlAG~~Yw 127 (173)
T PF12046_consen 68 EVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLLSPLAGIFYW 127 (173)
T ss_pred cEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHhhhhhhhhh
Confidence 4566788885444 433322 222333333332 24556666666666666663
No 108
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=21.44 E-value=1.5e+02 Score=21.14 Aligned_cols=37 Identities=35% Similarity=0.330 Sum_probs=25.5
Q ss_pred HHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHH
Q 019626 215 SSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAA 251 (338)
Q Consensus 215 ~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a 251 (338)
.+++.+.+|+..|=..+.|....|+..-++...|+.+
T Consensus 8 ~G~~vG~~~~~l~vp~PAPP~laGl~gi~gm~~G~~~ 44 (49)
T TIGR03510 8 AGLLVGALYSLLKVPSPAPPVLAGLVGLLGMLLGEQA 44 (49)
T ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhHHH
Confidence 4567788888877666667677667666666667644
No 109
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=21.32 E-value=6.7e+02 Score=24.60 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=25.7
Q ss_pred cHHHHHhcC-CceeeEeeCc---chHHHHH-HHHHHHHHHH-----HHHHHHhhhhHHHHHH
Q 019626 274 DKEDDLKVG-VKSTALRFGD---SSKEWTT-GFGIACISSL-----ALSGYNADIGIYLLLV 325 (338)
Q Consensus 274 D~e~D~~~G-~kTlav~~G~---k~a~~l~-~~~~~~i~~l-----~~~g~~~~lg~~y~~~ 325 (338)
|+|=|++-. =+.-|+.-|+ +.+.... .+.++.+..+ ++++++.-.|+.+|++
T Consensus 76 DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~ 137 (304)
T COG0109 76 DRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVV 137 (304)
T ss_pred hhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888887743 2344666665 3344333 2344444433 2344444455555543
Done!