Query 019626
Match_columns 338
No_of_seqs 175 out of 1538
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mav_A Farnesyl pyrophosphate 22.2 3.2E+02 0.011 25.9 8.9 51 138-193 105-155 (395)
2 3dh4_A Sodium/glucose cotransp 9.5 1.2E+03 0.04 22.6 13.3 19 145-163 337-355 (530)
3 2kdc_A Diacylglycerol kinase; 8.6 3.4E+02 0.012 21.6 4.0 29 149-179 63-91 (121)
4 1wlp_A Cytochrome B-245 light 6.5 2.3E+02 0.0077 16.6 1.4 12 31-42 6-17 (26)
5 3pde_A Farnesyl-diphosphate sy 5.3 3.7E+02 0.013 24.8 2.9 56 141-201 73-130 (309)
6 3p8l_A Geranyltranstransferase 5.1 3.9E+02 0.013 24.5 3.0 56 142-202 75-132 (302)
7 3m0g_A Farnesyl diphosphate sy 4.9 5.3E+02 0.018 23.4 3.8 58 139-201 62-121 (297)
8 3uca_A Geranyltranstransferase 4.7 4.3E+02 0.015 24.5 2.9 54 142-200 98-153 (324)
9 2jp3_A FXYD domain-containing 4.6 5.9E+02 0.02 18.3 2.9 16 187-202 21-36 (67)
10 2xq2_A Sodium/glucose cotransp 4.6 2.1E+03 0.073 21.0 13.3 19 145-163 366-384 (593)
No 1
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=22.20 E-value=3.2e+02 Score=25.90 Aligned_cols=51 Identities=14% Similarity=-0.016 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHH
Q 019626 138 KMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGF 193 (338)
Q Consensus 138 ~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~ 193 (338)
...+-+..+.=++|.++-+..|+.|.+.= +| .+|-.--.-....|+..+=.
T Consensus 105 ~~~~~~A~aiEliH~asLiHDDImD~s~~---RR--G~pt~h~~~g~~~Ail~GD~ 155 (395)
T 3mav_A 105 EKAACLAWCIEILQAAFLVADDIMDKGEM---RR--NKYCWYLLKDVETKNAVNDV 155 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSE---ET--TEECGGGSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhcCCCC---CC--CchhhhhccchHHHHHhhhH
Confidence 33444555556899999999999775332 23 45555555556666555433
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=9.46 E-value=1.2e+03 Score=22.56 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 019626 145 CGALLLRGAGCTVNDLLDR 163 (338)
Q Consensus 145 l~~~l~~~a~~~lND~~D~ 163 (338)
+...+...++...||++..
T Consensus 337 ~ss~l~s~st~~~~Diy~~ 355 (530)
T 3dh4_A 337 LASMLNSTATIFTMDIYKE 355 (530)
T ss_dssp HHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhHHHHHhHHHHH
Confidence 3444556677788888754
No 3
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=8.60 E-value=3.4e+02 Score=21.56 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhcccccccccCCCCCCCcccc
Q 019626 149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVAS 179 (338)
Q Consensus 149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~s 179 (338)
.+-...-.+|.-.+.-.|+..+. ..|+..
T Consensus 63 ~lVl~~EllNTAIE~vvD~v~~e--~h~lak 91 (121)
T 2kdc_A 63 MLVMIVEILNSAIEAVVDRIGSE--YHELSG 91 (121)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCC--SCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc--cCHHHH
Confidence 44577788899998888887543 566653
No 4
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=6.45 E-value=2.3e+02 Score=16.64 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=7.1
Q ss_pred CCCCCCCCCcch
Q 019626 31 SNPILNPKLNPH 42 (338)
Q Consensus 31 ~~~~~~~~~~~~ 42 (338)
++|-.||+.||.
T Consensus 6 kqpP~nPPPRpP 17 (26)
T 1wlp_A 6 KQPPSNPPPRPP 17 (26)
T ss_dssp CCCCSSCCCCCC
T ss_pred cCCCCCcCCCCc
Confidence 455566666664
No 5
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=5.31 E-value=3.7e+02 Score=24.78 Aligned_cols=56 Identities=18% Similarity=-0.052 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhhc--ccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q 019626 141 ALFGCGALLLRGAGCTVNDL--LDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGI 201 (338)
Q Consensus 141 ll~~l~~~l~~~a~~~lND~--~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l 201 (338)
.-+..+.=+++.++-+..|+ .|-+.= +| .+|-.-.......|+..+-.+...++-+
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD~s~~---RR--G~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 130 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMDNDAL---RR--GEPTNHVKFGAGMATLAGDGLLTLAFQW 130 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTTCCSE---ET--TEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCchhccCCCC---CC--CCcchhhhcChHHHHHHHHHHHHHHHHH
Confidence 33455566889999999999 775332 23 3455544555666666655555555433
No 6
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=5.13 E-value=3.9e+02 Score=24.45 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhc--ccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 019626 142 LFGCGALLLRGAGCTVNDL--LDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGIL 202 (338)
Q Consensus 142 l~~l~~~l~~~a~~~lND~--~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~ 202 (338)
-+..+.=+++.++-+..|+ .|.+.= +| .+|-.-.......|+..+=.++..++-+.
T Consensus 75 ~~A~avEliH~asLIHDDIP~mD~s~~---RR--G~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 132 (302)
T 3p8l_A 75 QVAASLEMIHTYSLIHDDLPAMDDDDL---RR--GKPTNHKVFGEATAILAGDGLLTGAFQLL 132 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTCCSE---ET--TEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCchhccCCCc---cC--CCcchhhhcChHHHHHHHHHHHHHHHHHH
Confidence 3445566889999999999 665432 23 35555445566666666655555554433
No 7
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=4.94 E-value=5.3e+02 Score=23.44 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc--ccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q 019626 139 MMALFGCGALLLRGAGCTVNDL--LDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGI 201 (338)
Q Consensus 139 ~~ll~~l~~~l~~~a~~~lND~--~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l 201 (338)
...-+..+.=+++.++-+..|+ .|- |.. +| .+|-.-..-....|+..+=.++..++-+
T Consensus 62 ~~~~~A~avEliH~asLIHDDip~mD~--s~~-RR--G~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 121 (297)
T 3m0g_A 62 QAMPAALAVEALHAYSLVHDDMPCMDN--DDL-RR--GLPTVHKKWDDATAVLAGDALQTLAFEL 121 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTC--CSE-ET--TEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccCC--CCc-cC--CCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 3444555666889999999999 554 331 33 4565555566777777666555555443
No 8
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=4.70 E-value=4.3e+02 Score=24.50 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhc--ccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH
Q 019626 142 LFGCGALLLRGAGCTVNDL--LDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLG 200 (338)
Q Consensus 142 l~~l~~~l~~~a~~~lND~--~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~ 200 (338)
-+..+.=+++.++-+..|+ .|-+.=| | .+|-.-..-....|+..+=.++..++-
T Consensus 98 ~~A~aiEliH~aSLIHDDIP~mD~s~~R---R--G~pt~h~~~G~~~AIlaGD~Ll~~A~~ 153 (324)
T 3uca_A 98 TPAMAIEMIHTYSLIHDDLPCMDNDDLR---R--GKPTNHKVFGEAIAVLAGDALLNEAMK 153 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCSEE---T--TEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCchhccCCCCC---C--CCccHHHhcChHHHHHHHHHHHHHHHH
Confidence 3445556889999999999 7754322 3 345444444556666655555544443
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=4.61 E-value=5.9e+02 Score=18.27 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019626 187 GLSFLGFQLLLGLGIL 202 (338)
Q Consensus 187 A~~~~~~l~~lgl~l~ 202 (338)
.++++++++++|+++.
T Consensus 21 GLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 21 GLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHH
Confidence 5667777777776654
No 10
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=4.60 E-value=2.1e+03 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 019626 145 CGALLLRGAGCTVNDLLDR 163 (338)
Q Consensus 145 l~~~l~~~a~~~lND~~D~ 163 (338)
+...+...++...||++-+
T Consensus 366 ~~s~l~a~st~~~~Diy~~ 384 (593)
T 2xq2_A 366 LASMLNSTATIFTMDIYKE 384 (593)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444566777788888753
Done!