Query 019626
Match_columns 338
No_of_seqs 175 out of 1538
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 04:40:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019626.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019626hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1diha2 d.81.1.3 (A:131-240) D 8.8 77 0.0056 22.9 2.1 28 149-176 9-37 (110)
2 d1rqja_ a.128.1.1 (A:) Farnesy 8.3 3.8E+02 0.028 21.8 7.1 62 139-203 65-126 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 7.0 2.1E+02 0.015 23.6 4.5 60 141-203 64-123 (290)
4 d1te7a_ b.122.1.7 (A:) Hypothe 5.0 1.8E+02 0.013 20.8 2.3 18 274-291 11-28 (103)
5 d1hfes_ a.137.4.1 (S:) Fe-only 4.3 92 0.0067 21.9 0.2 24 33-56 23-46 (88)
6 d1ltqa1 c.108.1.9 (A:153-301) 3.9 1.6E+02 0.012 20.7 1.4 19 274-292 130-148 (149)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.9 8.4E+02 0.061 19.4 6.4 18 218-236 40-57 (248)
8 d2iaya1 d.376.1.1 (A:1-113) Hy 3.7 1E+02 0.0073 22.7 -0.1 29 39-69 18-47 (113)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 3.5 4.1E+02 0.03 14.6 4.1 6 210-215 21-26 (33)
10 d2c9wa1 a.271.1.1 (A:149-198) 2.5 3.4E+02 0.025 16.7 1.6 11 94-104 34-44 (50)
No 1
>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=8.85 E-value=77 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhcccccc-cccCCCCCCCc
Q 019626 149 LLRGAGCTVNDLLDRDI-DNMVERTRLRP 176 (338)
Q Consensus 149 l~~~a~~~lND~~D~~i-D~~~~rt~~RP 176 (338)
+...++-.+|+++|.++ |..++.+++-|
T Consensus 9 l~~~~a~~l~~~~dieI~E~HH~~K~DaP 37 (110)
T d1diha2 9 LLEKAAKVMGDYTDIEIIEAHHRHKVDAP 37 (110)
T ss_dssp HHHHHHHHHTTTSEEEEEEEECTTCCSSS
T ss_pred HHHHHHHhcccccChhhHHHHHhcCCCCC
Confidence 44566677889999885 77776655554
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=8.30 E-value=3.8e+02 Score=21.80 Aligned_cols=62 Identities=15% Similarity=0.055 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 019626 139 MMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILL 203 (338)
Q Consensus 139 ~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~ 203 (338)
...-+..+.=++|.++-+..|+.|.|.|.. +| .+|-.-.+.....|+..+-.+...+.-+..
T Consensus 65 ~~~~~A~aiEllH~asLiHDDI~d~d~~~~-RR--G~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~ 126 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYSLIHDDLPAMDDDDL-RR--GLPTCHVKFGEANAILAGDALQTLAFSILS 126 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCCE-ET--TEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHccchhhhhhhc-cc--ccccceeeeCcchhhhhcchHHHHHHHHHH
Confidence 444556667789999999999999887653 34 456555556667777777666666655443
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=7.00 E-value=2.1e+02 Score=23.56 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 019626 141 ALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILL 203 (338)
Q Consensus 141 ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~ 203 (338)
+-...+.=++|.++-+..|+.|.|-|.. +| .+|-.-.+-....|...+-.+...+.-+..
T Consensus 64 ~~~A~avEllH~asLIHDDI~d~D~~~~-RR--g~pt~~~~~g~~~Ail~Gd~l~~~a~~l~~ 123 (290)
T d1rtra_ 64 MKSAIALEMIHTYSLIHDDLPAMDNDDY-RR--GKLTNHKVYGEWTAILAGDALLTKAFELIS 123 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTTCCSE-ET--TEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhhhh-hh--cchhhHHHhhhhHHHHcCcchhHHHHHHHH
Confidence 3345566689999999999998887763 44 567776677777777777666655555443
No 4
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=4.97 E-value=1.8e+02 Score=20.82 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.1
Q ss_pred cHHHHHhcCCceeeEeeC
Q 019626 274 DKEDDLKVGVKSTALRFG 291 (338)
Q Consensus 274 D~e~D~~~G~kTlav~~G 291 (338)
..|.|..+|+||+.+|--
T Consensus 11 Rfe~dIlsGkKTITIRD~ 28 (103)
T d1te7a_ 11 RFQDDILAGRKTITIRDE 28 (103)
T ss_dssp HHHHHHHTCCCEEEEECG
T ss_pred hhhHHHhcCCceEEeccc
Confidence 568999999999988753
No 5
>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=4.30 E-value=92 Score=21.88 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.6
Q ss_pred CCCCCCCcchhhhccccccccCCC
Q 019626 33 PILNPKLNPHIAKLTNHDRWVPNS 56 (338)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~ 56 (338)
|+-.|.-||.+++.|.+|...+||
T Consensus 23 ~iR~s~eNp~V~~LY~e~Lg~P~S 46 (88)
T d1hfes_ 23 PVRASQDNTQVKALYKSYLEKPLG 46 (88)
T ss_dssp SCCSGGGCHHHHHHHHHTTCSTTS
T ss_pred CcCCCCcCHHHHHHHHHHHcCcCc
Confidence 556778899999999999988887
No 6
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=3.91 E-value=1.6e+02 Score=20.68 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=13.1
Q ss_pred cHHHHHhcCCceeeEeeCc
Q 019626 274 DKEDDLKVGVKSTALRFGD 292 (338)
Q Consensus 274 D~e~D~~~G~kTlav~~G~ 292 (338)
|+|.-+++|++++-|..|.
T Consensus 130 dv~a~~~~Gi~~~~V~~Gd 148 (149)
T d1ltqa1 130 VVEMWRRIGVECWQVASGD 148 (149)
T ss_dssp HHHHHHHTTCCEEECSCCC
T ss_pred HHHHHHHCCCcEEEeCCCC
Confidence 6666667777777776663
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.89 E-value=8.4e+02 Score=19.38 Aligned_cols=18 Identities=11% Similarity=0.392 Sum_probs=8.5
Q ss_pred HHHHhccCCcccCchhHHH
Q 019626 218 LLVFSYPLMKRFTFWPQAY 236 (338)
Q Consensus 218 ~~~~~Ys~lKr~~~~~~~v 236 (338)
+..++|- -||..++.-+.
T Consensus 40 ~~~~vy~-s~r~~p~kyi~ 57 (248)
T d2r6gf1 40 AGLYIFA-NRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHS-SSCCTTHHHHH
T ss_pred heEEEEE-ccCccceehhh
Confidence 3445552 45555554343
No 8
>d2iaya1 d.376.1.1 (A:1-113) Hypothetical protein Lp2179 {Lactobacillus plantarum [TaxId: 1590]}
Probab=3.68 E-value=1e+02 Score=22.74 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred Ccchhhhcccccc-ccCCCCCCccccccccee
Q 019626 39 LNPHIAKLTNHDR-WVPNSEQNFRYVWVASIC 69 (338)
Q Consensus 39 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 69 (338)
.+|.+|+|+-..- ....+.+||++ .|...
T Consensus 18 isp~iKkyTL~D~gF~~tk~Gnf~l--~r~Ld 47 (113)
T d2iaya1 18 LSPTVKKYTLMDLGFVKGRSGAFSF--ERSLD 47 (113)
T ss_dssp ECTTCCHHHHHHTTCEECTTSCEEE--EEEES
T ss_pred ECcccceEEEecccceeccCccEEE--EeccC
Confidence 3577899988886 67778999998 44444
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=3.48 E-value=4.1e+02 Score=14.60 Aligned_cols=6 Identities=33% Similarity=0.213 Sum_probs=2.4
Q ss_pred HHHHHH
Q 019626 210 RILGAS 215 (338)
Q Consensus 210 ~~l~~~ 215 (338)
+++|..
T Consensus 21 fw~gv~ 26 (33)
T d1xmec1 21 FWLGVY 26 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 10
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.50 E-value=3.4e+02 Score=16.68 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=9.4
Q ss_pred cccHHHHHHHH
Q 019626 94 YLPRQARAYAK 104 (338)
Q Consensus 94 ~~~~~l~~yl~ 104 (338)
.+|++++.|++
T Consensus 34 PLP~~Lk~YL~ 44 (50)
T d2c9wa1 34 PLPTRLKDYLE 44 (50)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 46899999987
Done!