BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019627
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 26/88 (29%)
Query: 91 FKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
+KT LC F+ G C+ GE C FAHG +LR + +
Sbjct: 4 YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPK---------------------- 41
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+K +LC+ F+ CPYG RC+F+H
Sbjct: 42 ---YKTELCRTFHTIGFCPYGPRCHFIH 66
Score = 35.8 bits (81), Expect = 0.031, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 40/106 (37%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YG++C F H
Sbjct: 4 YKTELCRPFEESGTCKYGEKCQFAH----------------------------------- 28
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSE 257
G + S P Y KT+LC + T G CP+G +CHF H E
Sbjct: 29 ---GFHELRSLTRHPKY-KTELCRTFHTIGFCPYGPRCHFIHNADE 70
Score = 35.0 bits (79), Expect = 0.056, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259
+KT+LC + + G C +GEKC FAHG EL+
Sbjct: 4 YKTELCRPFEESGTCKYGEKCQFAHGFHELR 34
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 26/93 (27%)
Query: 86 ITNIFFKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGN 144
T+ +KT LC + + G CR G C FAHG+ +LRQ
Sbjct: 5 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA---------------------- 42
Query: 145 WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
++ +K +LC KF CPYG RC+F+H
Sbjct: 43 ---NRHPKYKTELCHKFKLQGRCPYGSRCHFIH 72
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 230 WKTKLCIKW-TQGQCPFGEKCHFAHGQSE 257
+KT+LC K+ QG+CP+G +CHF H +E
Sbjct: 48 YKTELCHKFKLQGRCPYGSRCHFIHNPTE 76
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 221 GSNCVKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259
GS+ +KT+LC +++ G+C +G KC FAHG EL+
Sbjct: 1 GSHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR 40
>pdb|2D9M|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 3 In
Zinc Finger Ccch-Type Domain Containing 7a
Length = 69
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 234 LCIKWTQGQCPFGEKCHFAHGQSELQ 259
+C ++ G CP G C FAHG +EL
Sbjct: 22 ICDRYMNGTCPEGNSCKFAHGNAELH 47
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 95 LCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSG 142
+C ++ +G C G +C FAHG +L + W+E + + +++SG
Sbjct: 22 ICDRYMNGTCPEGNSCKFAHGNAELHE----WEERRDALKMKLNKASG 65
>pdb|1JE6|A Chain A, Structure Of The Mhc Class I Homolog Micb
Length = 275
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 194 SAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQ 240
S ++I T PP+V +CS +EGN V C ++ + + W Q
Sbjct: 175 SGVAIRRTVPPMVNVTCSEVSEGNITV--TCRASSFYPRNITLTWRQ 219
>pdb|2WY3|A Chain A, Structure Of The Hcmv Ul16-Micb Complex Elucidates Select
Binding Of A Viral Immunoevasin To Diverse Nkg2d Ligands
pdb|2WY3|C Chain C, Structure Of The Hcmv Ul16-Micb Complex Elucidates Select
Binding Of A Viral Immunoevasin To Diverse Nkg2d Ligands
Length = 319
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 194 SAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQ 240
S ++I T PP+V +CS +EGN V C ++ + + W Q
Sbjct: 175 SGVAIRRTVPPMVNVTCSEVSEGNITV--TCRASSFYPRNITLTWRQ 219
>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|B Chain B, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|C Chain C, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|D Chain D, Crystal Structure Of The Zinc Finger Of Zgpat
Length = 167
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 215 EGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQ 255
+G+ V + P + K C + +G+C F E C F+HGQ
Sbjct: 59 DGSAGVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQ 99
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 96 CAKFKHGACRNGENCNFAHG----MEDLR 120
C F G CR ENC F+HG +++LR
Sbjct: 79 CPFFLEGKCRFKENCRFSHGQVVSLDELR 107
>pdb|4AH2|B Chain B, Hla-Dr1 With Covalently Linked Clip106-120 In Canonical
Orientation
Length = 229
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 146 DDDQKIIHKMKLCKKFYNG-EECPYGDRCNFLHEDPAKFRDDSGRYRESSAI 196
D + + ++K F+NG E +RC + E+ +F D G YR + +
Sbjct: 33 DTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTEL 84
>pdb|3BSZ|H Chain H, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|N Chain N, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
Length = 215
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 17/169 (10%)
Query: 103 ACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFY 162
+C+ ++ M ++Q P E +GG + +S +QK K KL
Sbjct: 21 SCKASGYSFTSYWMHWIKQRPGQGLEWIGGVYPGDSHTS-----YNQKFKGKAKLTA--V 73
Query: 163 NGEECPYGDRCNFLHEDPAKF----------RDDSGRYRESSAISIGTTGPPVVTGSCSN 212
Y + + +ED A + +D G+ + S TT P V + +
Sbjct: 74 TSASTAYMELSSLTNEDSAVYYCTRSGFDYGNEDWGQGTTLTVSSAKTTPPSVYPLAPGS 133
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVI 261
A+ N V C+ Y+ + + W G G A QS+L +
Sbjct: 134 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL 182
>pdb|2H00|A Chain A, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|B Chain B, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|C Chain C, Human Methyltransferase 10 Domain Containing Protein
Length = 254
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 120 RQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNF 175
R+PPP+ V G E + GG + ++IIH KK C G +C+
Sbjct: 166 RRPPPSS---VNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSL 218
>pdb|2DTG|A Chain A, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
pdb|3LOH|A Chain A, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 220
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 113 AHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDR 172
A+G+ +RQPP E +G + GN D + + ++ + K N + +
Sbjct: 31 AYGVNWVRQPPGKGLEWLGMIWGD------GNTDYNSALKSRLSISKD--NSKSQVFLKM 82
Query: 173 CNFLHEDPAKF---RDDSGR-----YRESSAISIG---TTGPPVVTGSCSNQAEGNRPVG 221
+ +D A++ RD G + + +++++ TT P V + + A+ N V
Sbjct: 83 NSLQTDDTARYYCARDPYGSKPMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVT 142
Query: 222 SNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVI 261
C+ Y+ + + W G G A QS+L +
Sbjct: 143 LGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL 182
>pdb|1FDL|H Chain H, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
pdb|1CIC|D Chain D, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 218
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 19/158 (12%)
Query: 114 HGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRC 173
+G+ +RQPP E +G + GN D + + ++ + K + + +
Sbjct: 32 YGVNWVRQPPGKGLEWLGMIWGD------GNTDYNSALKSRLSISK---DNSKSQVFLKM 82
Query: 174 NFLH-EDPAKF---------RDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSN 223
N LH +D A++ D G+ + S TT P V + + A+ N V
Sbjct: 83 NSLHTDDTARYYCARERDYRLDYWGQGTTLTVSSASTTPPSVFPLAPGSAAQTNSMVTLG 142
Query: 224 CVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVI 261
C+ Y+ + + W G G A QS+L +
Sbjct: 143 CLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,182,946
Number of Sequences: 62578
Number of extensions: 484462
Number of successful extensions: 1454
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1429
Number of HSP's gapped (non-prelim): 38
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)