BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019627
(338 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 205/327 (62%), Gaps = 39/327 (11%)
Query: 51 FKRPRNYEDNESNSATYPPM----NPRMNPSMNLP-INKGITNIFFKTRLCAKFKHGACR 105
KRPR +DN N A+ P NP M PS+N P +NKG NIF+KTR+CAKF+ G CR
Sbjct: 60 LKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCR 119
Query: 106 NGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSS-----------------GGNWDDD 148
NGE CNFAHG+EDLRQPP NWQE+VG A +DR NW+DD
Sbjct: 120 NGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERPSLAPVVNNNWEDD 179
Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTG 208
QKII +MKLC+KF GEECPYGDRCNF+HED +KFR+DSG+ RESS IS+G T +
Sbjct: 180 QKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSD 239
Query: 209 SCSNQAEGNR----PV-----GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSEL 258
+ SN E NR PV VK VYWKT+LC+K+ GQCPFG+KCHFAHGQ+EL
Sbjct: 240 TASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299
Query: 259 QVIGGRTEGEAGNPSFISVKPQLVPAND-------SSPTAVLPTLNKEGQGKQCLFKWKG 311
GR EGEA N K +VPAN+ + TA LN+EG+ K+CL KW
Sbjct: 300 HNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSD 359
Query: 312 PKKINRIYADWLDDMPLAHNLPSQVES 338
KKINRIY DW+DD+P+ VES
Sbjct: 360 SKKINRIYGDWIDDLPVGQKSTKPVES 386
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 142/301 (47%), Gaps = 65/301 (21%)
Query: 79 NLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGG-RAEE 137
N ++ I +FFKT+LC KF+ G C NCNFAHGME+LR+PPPNWQE+V A E
Sbjct: 76 NTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATE 135
Query: 138 DR---------SSGGNWDDDQKI----------IHKMKLCKKFYNGEECPYGDRCNFLHE 178
R SSG D +K + CKKFY E CPYGD C FLH
Sbjct: 136 AREEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLH- 194
Query: 179 DPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN----------QAEGNRPVGSNCVKPV 228
D+ + RES AIS+ + G N A GN P+ KP
Sbjct: 195 ------DEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAASASAAAGNGPM----QKPS 244
Query: 229 YWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGG-------RTEGEAGNPSFISVKPQ 280
WKT++C KW G CPFG KCHFAHG +EL GG R + V +
Sbjct: 245 NWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQAVVSAK 304
Query: 281 LVPANDSSPTAVLPTLN----------------KEGQGKQCLFKWKGPKKINRIYADWLD 324
++ T VLP + + GQ ++ + KWKGP KI+RIY DW+D
Sbjct: 305 APAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYGDWID 364
Query: 325 D 325
+
Sbjct: 365 E 365
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 140/311 (45%), Gaps = 80/311 (25%)
Query: 84 KGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGG 143
K I +FFKT+LC KF+ G C NCNFAH +E+LR+PPPNWQE+V A E+ SGG
Sbjct: 85 KAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVA---AHEEERSGG 141
Query: 144 NWDDDQKIIH----------------------KMKLCKKFYNGEECPYGDRCNFLHEDPA 181
++ K + CKKFY E CPYG+ C FLH
Sbjct: 142 MGTPTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH---- 197
Query: 182 KFRDDSGRYRESSAISIGTTGPP--------------------VVTGSCSNQAEGNRPVG 221
D++ R RES AIS+G G VV + +
Sbjct: 198 ---DEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGI- 253
Query: 222 SNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGG---RTEGEAG------- 270
+KP WKT++C KW G CPFG KCHFAHG +EL GG EG+ G
Sbjct: 254 -QILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDT 312
Query: 271 -----NPSFISVKPQL----VPANDSSPTAVLPTLNKEGQ------GKQCLFKWKGPKKI 315
NP +S L VP N + L + G + KWKGP KI
Sbjct: 313 KQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQKPGIRTHQKWKGPAKI 372
Query: 316 NRIYADWLDDM 326
+RIY DW+DD+
Sbjct: 373 SRIYGDWIDDI 383
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 91/201 (45%), Gaps = 42/201 (20%)
Query: 150 KIIHKMKLCKKFYNGEECPY-GDRCNFLHE------------DPAKFRDDSGRYRESSAI 196
K K KLC KF G CPY C+F H + + ++ R RES A+
Sbjct: 69 KSFFKTKLCFKFRAGT-CPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAV 127
Query: 197 SIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQ 255
S+G G T +K WKT++C KW T G CPFG CHFAHG
Sbjct: 128 SLGPRGNVAQT-----------------LKSPNWKTRICNKWQTTGYCPFGSHCHFAHGP 170
Query: 256 SELQVI-GGRTEGEAGNPSFISVKPQLVPANDSSPTAVLP---------TLNKEGQGKQC 305
SEL GG EGE + ++ + D+ + V P + ++ G +
Sbjct: 171 SELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGVSSQRTSSAVTQKPNGVRT 230
Query: 306 LFKWKGPKKINRIYADWLDDM 326
KWKGP KI+R+Y DW+DD+
Sbjct: 231 QRKWKGPDKISRVYGDWIDDI 251
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 86 ITNIFFKTRLCAKFKHGAC-RNGENCNFAHGMEDLR---QPPPNWQELVGGGRAEEDRSS 141
I FFKT+LC KF+ G C + +C+FAH E+LR PPPNWQE V A +R S
Sbjct: 67 IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETV--TEASRNRES 124
Query: 142 -------GGNWDDDQKIIH-KMKLCKKFYNGEECPYGDRCNFLH 177
GN K + K ++C K+ CP+G C+F H
Sbjct: 125 FAVSLGPRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAH 168
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 26/88 (29%)
Query: 91 FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
+KT LC F + G CR G C FAHG+ +LRQP +
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQP-------------------------SR 136
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+K +LC KFY CPYG RC+F+H
Sbjct: 137 HPKYKTELCHKFYLQGRCPYGSRCHFIH 164
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 40/106 (37%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YG +C F H G R+ S
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAH--------GLGELRQPS------------------ 135
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIK-WTQGQCPFGEKCHFAHGQSE 257
+ +KT+LC K + QG+CP+G +CHF H SE
Sbjct: 136 -------------RHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259
+KT+LC +++ G+C +G KC FAHG EL+
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELR 132
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 30/116 (25%)
Query: 67 YPPMNPRMNPSMNLPINKGITNIF----FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQ 121
+ P+ PR+ P ++ +KT LC F + G CR G C FAHG+ +LRQ
Sbjct: 76 FAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 135
Query: 122 PPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
++ +K +LC KFY CPYG RC+F+H
Sbjct: 136 -------------------------ANRHPKYKTELCHKFYLQGRCPYGSRCHFIH 166
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 40/106 (37%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YG +C F H G R++
Sbjct: 104 YKTELCRTFSESGRCRYGAKCQFAH--------GLGELRQA------------------- 136
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIK-WTQGQCPFGEKCHFAHGQSE 257
NR P Y KT+LC K + QG+CP+G +CHF H SE
Sbjct: 137 ----NR-------HPKY-KTELCHKFYLQGRCPYGSRCHFIHNPSE 170
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259
+KT+LC +++ G+C +G KC FAHG EL+
Sbjct: 104 YKTELCRTFSESGRCRYGAKCQFAHGLGELR 134
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 24/142 (16%)
Query: 127 QELVGGGRAEEDRSSGG------NWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 180
E GG RA + ++G + + K+K C KF++ CP+G C+FLH P
Sbjct: 1 MEAGGGKRAAPEGTNGAAKRARASESSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFP 60
Query: 181 AKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVG---SNCVKPVYWKTKLCIK 237
++ + + +S PP G P+G N KT++C K
Sbjct: 61 GGYQAAA---KMTSHGGTAVAAPP-----------GRMPLGPGAPNGPPTSSVKTRMCNK 106
Query: 238 WTQGQ-CPFGEKCHFAHGQSEL 258
+ + C +G KCHFAHG+ EL
Sbjct: 107 YNTAEGCKWGSKCHFAHGEREL 128
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 230 WKTKLCIKWTQGQCPFGEKCHFAHGQSELQ 259
+KTKLC + +G C FG++CHFAHG+SEL+
Sbjct: 260 FKTKLCENFNKGSCTFGDRCHFAHGESELR 289
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 91 FKTRLCAKFKHGACRNGENCNFAHGMEDLRQPP 123
FKT+LC F G+C G+ C+FAHG +LR+PP
Sbjct: 260 FKTKLCENFNKGSCTFGDRCHFAHGESELRKPP 292
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 154 KMKLCKKFYNGEECPYGDRCNFLHED 179
K KLC+ F G C +GDRC+F H +
Sbjct: 261 KTKLCENFNKGS-CTFGDRCHFAHGE 285
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 76 PSMNLPINKGITN----IFFKTRLCAKFKHG-ACRNGENCNFAHGMEDLRQP 122
P +P+ G N KTR+C K+ C+ G C+FAHG +L +P
Sbjct: 80 PPGRMPLGPGAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGKP 131
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 26/88 (29%)
Query: 91 FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
+KT LC F + G CR G C FAHG+ +LRQ +
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQ-------------------------ASR 136
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+K +LC KFY CPYG RC+F+H
Sbjct: 137 HPKYKTELCHKFYLQGRCPYGSRCHFIH 164
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 40/106 (37%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YG +C F H G R++S
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAH--------GLGELRQASR----------------- 136
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIK-WTQGQCPFGEKCHFAHGQSE 257
P Y KT+LC K + QG+CP+G +CHF H SE
Sbjct: 137 -------------HPKY-KTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259
+KT+LC +++ G+C +G KC FAHG EL+
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELR 132
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 23/131 (17%)
Query: 154 KMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQ 213
K+K C KF++ CP+G+ C+F H P ++ + +++G P + +
Sbjct: 39 KLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQA------VAKTLNLGNPAVPAPARAPMDH 92
Query: 214 AEGNRPVGSNCVKPVYWKTKLCIKWTQGQ-CPFGEKCHFAHGQSELQVIGGRTEGEAGNP 272
A G N KT++C K+ + C FG+KCHFAHG+ EL G P
Sbjct: 93 A-----AGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGEREL-----------GKP 136
Query: 273 SFISVKPQLVP 283
+++S + + P
Sbjct: 137 AYMSHESAMAP 147
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 230 WKTKLCIKWTQGQCPFGEKCHFAHGQSE 257
+KTKLC + +G C FG++CHFAHG++E
Sbjct: 276 YKTKLCENFVKGTCTFGDRCHFAHGENE 303
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 91 FKTRLCAKFKHGACRNGENCNFAHGMEDLRQ 121
+KT+LC F G C G+ C+FAHG + R+
Sbjct: 276 YKTKLCENFVKGTCTFGDRCHFAHGENEQRK 306
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 92 KTRLCAKFKHG-ACRNGENCNFAHGMEDLRQPP 123
KTR+C K+ C+ G+ C+FAHG +L +P
Sbjct: 105 KTRMCTKYNTAEGCKFGDKCHFAHGERELGKPA 137
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLH 177
+K KLC+ F G C +GDRC+F H
Sbjct: 276 YKTKLCENFVKGT-CTFGDRCHFAH 299
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 26/88 (29%)
Query: 91 FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
+KT LC + + G CR G C FAHG+ +LRQ ++
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQ-------------------------ANR 130
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+K +LC KFY CPYG RC+F+H
Sbjct: 131 HPKYKTELCHKFYLQGRCPYGSRCHFIH 158
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 40/113 (35%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ + C YG +C F H G R++
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAH--------GLGELRQA------------------- 128
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIK-WTQGQCPFGEKCHFAHGQSELQVIGGR 264
NR P Y KT+LC K + QG+CP+G +CHF H +E + G+
Sbjct: 129 ----NR-------HPKY-KTELCHKFYLQGRCPYGSRCHFIHNPTEDLALPGQ 169
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 124 PNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKF 183
P+ GG RA E S + K K C KF++ CP+G+ C+FLH P +
Sbjct: 11 PDGANGAGGKRARESESF------QTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPGGY 64
Query: 184 RDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQ- 242
+ + + G P + GN V P KT+LC K+ +
Sbjct: 65 Q---------AVAKMTNLGGPAIAPPPGRMPMGNA-VPDGPPTPTV-KTRLCNKYNTAEG 113
Query: 243 CPFGEKCHFAHGQSEL 258
C +G+KCHFAHG+ EL
Sbjct: 114 CKWGDKCHFAHGEREL 129
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 81/207 (39%), Gaps = 49/207 (23%)
Query: 91 FKTRLCAKFKHG-ACRNGENCNFAHG--------MEDLRQPPPNWQELVG---------- 131
KTRLC K+ C+ G+ C+FAHG + D PPP G
Sbjct: 100 VKTRLCNKYNTAEGCKWGDKCHFAHGERELGKPMLMDSSMPPPMGPRPTGHFAPPPMPSP 159
Query: 132 --------GGRAEEDRSSG--------GNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNF 175
G A S G + K I ++ K E +
Sbjct: 160 AMSTPASFGASATAKISVDASLAGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIE 219
Query: 176 LHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVY---WKT 232
L + ++ S RE +SIG PP +G +PVG + +KT
Sbjct: 220 LEGTFDQIKNASAMVREL-IVSIGGGAPP----------QGKKPVGGSHRGGGPGSNFKT 268
Query: 233 KLCIKWTQGQCPFGEKCHFAHGQSELQ 259
KLC +T+G C FG++CHFAHG++EL+
Sbjct: 269 KLCENFTKGSCTFGDRCHFAHGENELR 295
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 91 FKTRLCAKFKHGACRNGENCNFAHGMEDLRQ 121
FKT+LC F G+C G+ C+FAHG +LR+
Sbjct: 266 FKTKLCENFTKGSCTFGDRCHFAHGENELRK 296
Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 87 TNIFFKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRA-EEDRSSGGN 144
T + K++ C KF C GE C+F H Q L G A R GN
Sbjct: 30 TGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPGGYQAVAKMTNLGGPAIAPPPGRMPMGN 89
Query: 145 W--DDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHED 179
D K +LC K+ E C +GD+C+F H +
Sbjct: 90 AVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGE 126
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 26/106 (24%)
Query: 73 RMNPSMNLPINKGITNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVG 131
R+ P+ P + + + +KT LC F+ +GAC+ G+ C FAHG+ +LR
Sbjct: 97 RLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS---------- 146
Query: 132 GGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+ +K +LC+ F+ CPYG RC+F+H
Sbjct: 147 ---------------LTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 40/121 (33%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YGD+C F H
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAH----------------------------------- 139
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGN 271
G + S P Y KT+LC + T G CP+G +CHF H E + + G + A
Sbjct: 140 ---GIHELRSLTRHPKY-KTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGGRDLSADR 195
Query: 272 P 272
P
Sbjct: 196 P 196
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 26/106 (24%)
Query: 73 RMNPSMNLPINKGITNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVG 131
R+ P+ P + + + +KT LC F+ +GAC+ G+ C FAHG+ +LR
Sbjct: 97 RLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS---------- 146
Query: 132 GGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+ +K +LC+ F+ CPYG RC+F+H
Sbjct: 147 ---------------LTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 40/121 (33%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YGD+C F H
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAH----------------------------------- 139
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGN 271
G + S P Y KT+LC + T G CP+G +CHF H E + + G + A
Sbjct: 140 ---GIHELRSLTRHPKY-KTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGGRDLSADR 195
Query: 272 P 272
P
Sbjct: 196 P 196
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 26/106 (24%)
Query: 73 RMNPSMNLPINKGITNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVG 131
R+ P+ P + + +KT LC F+ +GAC+ G+ C FAHG+ +LR
Sbjct: 97 RLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS---------- 146
Query: 132 GGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+ +K +LC+ F+ CPYG RC+F+H
Sbjct: 147 ---------------LTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 40/121 (33%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YGD+C F H
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAH----------------------------------- 139
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGN 271
G + S P Y KT+LC + T G CP+G +CHF H E + + G + A
Sbjct: 140 ---GIHELRSLTRHPKY-KTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDLSADR 195
Query: 272 P 272
P
Sbjct: 196 P 196
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 26/88 (29%)
Query: 91 FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
+KT LC + + G CR G C FAHG +LRQ ++
Sbjct: 97 YKTELCRTYSESGRCRYGAKCQFAHGPGELRQ-------------------------ANR 131
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+K +LC KFY CPYG RC+F+H
Sbjct: 132 HPKYKTELCHKFYLQGRCPYGSRCHFIH 159
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 40/113 (35%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ + C YG +C F H P + R
Sbjct: 97 YKTELCRTYSESGRCRYGAKCQFAH-GPGELR---------------------------- 127
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIK-WTQGQCPFGEKCHFAHGQSELQVIGGR 264
+ NR P Y KT+LC K + QG+CP+G +CHF H +E + G+
Sbjct: 128 --QANR-------HPKY-KTELCHKFYLQGRCPYGSRCHFIHNPTEDLALPGQ 170
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 26/93 (27%)
Query: 86 ITNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGN 144
+ + +KT LC F+ GAC+ GE C FAHG +LR
Sbjct: 127 VNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR------------------------ 162
Query: 145 WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+ +K +LC+ F+ CPYG RC+F+H
Sbjct: 163 -SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 194
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 40/115 (34%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YG++C F H
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAH----------------------------------- 156
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTE 266
G + S P Y KT+LC + T G CP+G +CHF H E + G E
Sbjct: 157 ---GFHELRSLTRHPKY-KTELCRTFHTIGFCPYGPRCHFIHNAEERRQAPGAGE 207
Score = 38.9 bits (89), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 225 VKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQVI 261
V +KT+LC + + G C +GEKC FAHG EL+ +
Sbjct: 127 VNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRSL 164
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 26/93 (27%)
Query: 86 ITNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGN 144
+ + +KT LC F+ +GAC+ GE C FAHG +LR
Sbjct: 129 VNSTRYKTELCRPFEENGACKYGEKCQFAHGFHELR------------------------ 164
Query: 145 WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+ +K +LC+ F+ CPYG RC+F+H
Sbjct: 165 -SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 196
Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 225 VKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQVI 261
V +KT+LC + + G C +GEKC FAHG EL+ +
Sbjct: 129 VNSTRYKTELCRPFEENGACKYGEKCQFAHGFHELRSL 166
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 40/115 (34%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YG++C F H
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAH----------------------------------- 158
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTE 266
G + S P Y KT+LC + T G CP+G +CHF H E + G E
Sbjct: 159 ---GFHELRSLTRHPKY-KTELCRTFHTIGFCPYGPRCHFIHNAEERRQAPGAGE 209
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 26/93 (27%)
Query: 86 ITNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGN 144
I + +KT LC F+ G C+ GE C FAHG +LR
Sbjct: 149 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS----------------------- 185
Query: 145 WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+ +K +LC+ F+ CPYG RC+F+H
Sbjct: 186 --LTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 216
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 225 VKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQVI 261
+ +KT+LC + + G C +GEKC FAHG EL+ +
Sbjct: 149 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSL 186
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 40/106 (37%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YG++C F H
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAH----------------------------------- 178
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSE 257
G + S P Y KT+LC + T G CP+G +CHF H E
Sbjct: 179 ---GFHELRSLTRHPKY-KTELCRTFHTIGFCPYGPRCHFIHNADE 220
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 26/93 (27%)
Query: 86 ITNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGN 144
I + +KT LC F+ G C+ GE C FAHG +LR
Sbjct: 122 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR------------------------ 157
Query: 145 WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+ +K +LC+ F+ CPYG RC+F+H
Sbjct: 158 -SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 189
Score = 38.5 bits (88), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 40/117 (34%)
Query: 142 GGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTT 201
GG+ +K +LC+ F C YG++C F H
Sbjct: 116 GGSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAH------------------------ 151
Query: 202 GPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSE 257
G + S P Y KT+LC + T G CP+G +CHF H E
Sbjct: 152 --------------GFHELRSLTRHPKY-KTELCRTFHTIGFCPYGPRCHFIHNADE 193
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 225 VKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQVI 261
+ +KT+LC + + G C +GEKC FAHG EL+ +
Sbjct: 122 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSL 159
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 26/93 (27%)
Query: 86 ITNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGN 144
+ + +KT LC F+ GAC+ GE C FAHG +LR
Sbjct: 97 VNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR------------------------ 132
Query: 145 WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+ +K +LC+ F+ CPYG RC+ +H
Sbjct: 133 -SLTRHPKYKTELCRTFHTIGFCPYGPRCHLIH 164
Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 225 VKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQVI 261
V +KT+LC + + G C +GEKC FAHG EL+ +
Sbjct: 97 VNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRSL 134
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 40/115 (34%), Gaps = 40/115 (34%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
+K +LC+ F C YG++C F H
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAH----------------------------------- 126
Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTE 266
G + S P Y KT+LC + T G CP+G +CH H E + G E
Sbjct: 127 ---GFHELRSLTRHPKY-KTELCRTFHTIGFCPYGPRCHLIHNAEERRQAPGAGE 177
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 43/146 (29%)
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH-EDPAKFRDDSGRYRESSAISIGTTGPPVVTG 208
K ++K +LC+ F C YG++C F H + KF+ S YR
Sbjct: 202 KTLYKTELCESFTIKGYCKYGNKCQFAHGLNELKFKKKSNNYR----------------- 244
Query: 209 SCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHG-QSELQVIGGRTE 266
TK CI W++ G CP+G++C F HG ++++ +
Sbjct: 245 -----------------------TKPCINWSKLGYCPYGKRCCFKHGDDKDVEIYQNAND 281
Query: 267 GEAGNPSFISVKPQLVPANDSSPTAV 292
G + + + + L P+N+ + T +
Sbjct: 282 GRSKDTALTPLPTSLAPSNNDNITNL 307
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 30/135 (22%)
Query: 86 ITNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGN 144
+ +KT LC F G C+ G C FAHG+ +L+ + N
Sbjct: 200 VNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNELKF-----------------KKKSNN 242
Query: 145 WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFR----DDSGRYRESSAISIGT 200
+ + K C + CPYG RC F H D + GR ++++ + T
Sbjct: 243 Y--------RTKPCINWSKLGYCPYGKRCCFKHGDDKDVEIYQNANDGRSKDTALTPLPT 294
Query: 201 TGPPVVTGSCSNQAE 215
+ P + +N ++
Sbjct: 295 SLAPSNNDNITNLSK 309
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 225 VKPVYWKTKLCIKWT-QGQCPFGEKCHFAHGQSELQ 259
V +KT+LC +T +G C +G KC FAHG +EL+
Sbjct: 200 VNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNELK 235
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 24/99 (24%)
Query: 91 FKTRLCAKFKHGA--CRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDD 148
FKTRLC G C G C FAHG+++LR A + + N
Sbjct: 274 FKTRLCMTHAAGINPCALGARCKFAHGLKELR--------------ASDIPTRYPNNK-- 317
Query: 149 QKIIHKMKLCKKFYNGEE--CPYGDRCNFLHEDPAKFRD 185
+K KLCK F G CPYG RC F+H +F++
Sbjct: 318 ----YKTKLCKNFARGGSGVCPYGLRCEFVHPSDTEFQN 352
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 227 PVYWKTKLCIKWTQG--QCPFGEKCHFAHGQSELQV 260
P +KT+LC+ G C G +C FAHG EL+
Sbjct: 271 PHNFKTRLCMTHAAGINPCALGARCKFAHGLKELRA 306
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 26/99 (26%)
Query: 80 LPINKGITNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEED 138
LP + + +KT LC F+ G C+ GE C FAHG +LR
Sbjct: 125 LPPQQPMNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELR------------------ 166
Query: 139 RSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
N K +K + C+ F++ CPYG RC+F+H
Sbjct: 167 -----NVHRHPK--YKTEYCRTFHSVGFCPYGPRCHFVH 198
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQVI 261
+KT+LC + + G+C +GEKC FAHG EL+ +
Sbjct: 136 YKTELCRPFEEAGECKYGEKCQFAHGSHELRNV 168
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 230 WKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIG 262
+KTK+C ++++G C +G++CHFAHG+SEL+ G
Sbjct: 206 YKTKICDRYSKGNCTYGDRCHFAHGESELRRSG 238
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 91 FKTRLCAKFKHGACRNGENCNFAHGMEDLRQ 121
+KT++C ++ G C G+ C+FAHG +LR+
Sbjct: 206 YKTKICDRYSKGNCTYGDRCHFAHGESELRR 236
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 154 KMKLCKKFYNGEECPYGDRCNFLHEDPAKF 183
K K C KF++ CP+GD C+FLH P +
Sbjct: 38 KSKPCTKFFSTSGCPFGDNCHFLHYVPGGY 67
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 153 HKMKLCKKFYNGEECPYGDRCNFLH 177
+K K+C ++ G C YGDRC+F H
Sbjct: 206 YKTKICDRYSKGN-CTYGDRCHFAH 229
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 26/91 (28%)
Query: 90 FFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDD 148
+KT C ++ G CR G C FAHG ++L++PP
Sbjct: 326 LYKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPP------------------------- 360
Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLHED 179
+ +K + C+ F CPYG RC FLH++
Sbjct: 361 RHPKYKSERCRSFMMYGYCPYGLRCCFLHDE 391
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 222 SNCVKP----VYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQ 259
SN V P +KT+ C W G C +G KC FAHG EL+
Sbjct: 315 SNGVAPNGKRALYKTEPCKNWQISGTCRYGSKCQFAHGNQELK 357
>sp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis
thaliana GN=At3g12130 PE=2 SV=1
Length = 248
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 230 WKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIG 262
+KTK+C ++++G C FG++CHFAHG++EL+ G
Sbjct: 214 FKTKICERFSKGNCTFGDRCHFAHGEAELRKSG 246
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 91 FKTRLCAKFKHGACRNGENCNFAHGMEDLRQ 121
FKT++C +F G C G+ C+FAHG +LR+
Sbjct: 214 FKTKICERFSKGNCTFGDRCHFAHGEAELRK 244
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 154 KMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQ 213
K K C KF++ CP+G+ C+FLH P G Y S ++ GPP+ S + Q
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLHYVP-------GGYNAVSQMT--NMGPPIPQVSRNMQ 88
Query: 214 AEGN 217
GN
Sbjct: 89 GSGN 92
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 154 KMKLCKKFYNGEECPYGDRCNFLH 177
K K+C++F G C +GDRC+F H
Sbjct: 215 KTKICERFSKGN-CTFGDRCHFAH 237
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 231 KTKLCIKW-TQGQCPFGEKCHFAH 253
K+K C K+ + CPFGE CHF H
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 24/99 (24%)
Query: 91 FKTRLCAKFKHGA--CRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDD 148
+KTRLC G C G C FAHG+++LR + + ++
Sbjct: 271 YKTRLCMMHASGIKPCDMGARCKFAHGLKELRA-----------------TDAPARYPNN 313
Query: 149 QKIIHKMKLCKKFYNGEE--CPYGDRCNFLHEDPAKFRD 185
+ +K KLCK F G CPYG RC F+H +F++
Sbjct: 314 K---YKTKLCKNFARGGTGFCPYGLRCEFVHPTDKEFQN 349
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 222 SNCVKPVYWKTKLCIKWTQG--QCPFGEKCHFAHGQSELQVI 261
++ +P +KT+LC+ G C G +C FAHG EL+
Sbjct: 263 TDSQQPPNYKTRLCMMHASGIKPCDMGARCKFAHGLKELRAT 304
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 25/86 (29%)
Query: 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKI 151
KT LC K++ GAC G C FAHG+++LR ++ R
Sbjct: 384 KTELCNKWERGACPYGARCRFAHGLQELR-------PVIRHPR----------------- 419
Query: 152 IHKMKLCKKFYNGEECPYGDRCNFLH 177
+K C+ F CPYG RC+F H
Sbjct: 420 -YKTLPCQMFAAASGCPYGHRCHFRH 444
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 231 KTKLCIKWTQGQCPFGEKCHFAHGQSELQVI 261
KT+LC KW +G CP+G +C FAHG EL+ +
Sbjct: 384 KTELCNKWERGACPYGARCRFAHGLQELRPV 414
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 44/131 (33%)
Query: 127 QELVGGGRAEEDRSSGGNWDDDQKI---IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKF 183
+E G E++ GG + + K +LC K+ G CPYG RC F H
Sbjct: 354 KEAAAAGDEEDEEDKGGGEVEVEAYRQGAAKTELCNKWERGA-CPYGARCRFAH------ 406
Query: 184 RDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQ- 242
+ RPV ++ +KT C +
Sbjct: 407 -----------------------------GLQELRPV----IRHPRYKTLPCQMFAAASG 433
Query: 243 CPFGEKCHFAH 253
CP+G +CHF H
Sbjct: 434 CPYGHRCHFRH 444
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 26/89 (29%)
Query: 90 FFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDD 148
KT LC K++ GAC G+NC FAHG+++LR ++ R
Sbjct: 232 MMKTELCNKWQETGACCYGDNCQFAHGIDELR-------PVIRHPR-------------- 270
Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+K ++C+ G CPYG RC+F H
Sbjct: 271 ----YKTEVCRMMVTGAMCPYGHRCHFRH 295
Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 210 CSNQAEGNR-PVGSNCVKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259
C Q +G R + + KT+LC KW + G C +G+ C FAHG EL+
Sbjct: 212 CVVQTKGEREALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELR 263
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 40/105 (38%)
Query: 154 KMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQ 213
K +LC K+ C YGD C F H
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAH-----------------------------------G 258
Query: 214 AEGNRPVGSNCVKPVYWKTKLC-IKWTQGQCPFGEKCHFAHGQSE 257
+ RPV ++ +KT++C + T CP+G +CHF H ++
Sbjct: 259 IDELRPV----IRHPRYKTEVCRMMVTGAMCPYGHRCHFRHSLTD 299
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 26/89 (29%)
Query: 90 FFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDD 148
FKT LC K++ G C G+ C FAHG+ +LR ++ R
Sbjct: 258 MFKTELCNKWEETGDCPYGDQCQFAHGVTELR-------PVIRHPR-------------- 296
Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+K +C+ G+ CPYG RC+F H
Sbjct: 297 ----YKTAVCRMVLAGDVCPYGHRCHFRH 321
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 45/137 (32%)
Query: 123 PPNWQELVGGGRAEEDRS-----SGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
PPN Q GG+ +++ SG + + + K +LC K+ +CPYGD+C F H
Sbjct: 224 PPNSQRAYDGGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAH 283
Query: 178 EDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIK 237
G T RPV ++ +KT +C
Sbjct: 284 ---------------------GVTEL--------------RPV----IRHPRYKTAVCRM 304
Query: 238 WTQGQ-CPFGEKCHFAH 253
G CP+G +CHF H
Sbjct: 305 VLAGDVCPYGHRCHFRH 321
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQLVPANDSS 288
+KT+LC KW + G CP+G++C FAHG +EL+ + +P + + ++V A D
Sbjct: 259 FKTELCNKWEETGDCPYGDQCQFAHGVTELRPV-------IRHPRYKTAVCRMVLAGDVC 311
Query: 289 P 289
P
Sbjct: 312 P 312
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 30/96 (31%)
Query: 83 NKGITNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSS 141
N+G+T KT LC K++ G C G++C FAHG+++LR + +
Sbjct: 219 NQGMT----KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPR-------------- 260
Query: 142 GGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+K ++C+ G+ CPYG RC+F H
Sbjct: 261 -----------YKTEVCRMVLAGDNCPYGHRCHFRH 285
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 231 KTKLCIKWTQ-GQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQLVPANDSSP 289
KT+LC KW + G CP+G+ C FAHG EL+ + +P + + ++V A D+ P
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV-------IRHPRYKTEVCRMVLAGDNCP 276
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 40/105 (38%)
Query: 154 KMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQ 213
K +LC K+ CPYGD C F H
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAH-----------------------------------G 248
Query: 214 AEGNRPVGSNCVKPVYWKTKLCIKWTQG-QCPFGEKCHFAHGQSE 257
+ RPV ++ +KT++C G CP+G +CHF H SE
Sbjct: 249 IKELRPV----IRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSE 289
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 26/89 (29%)
Query: 90 FFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDD 148
FKT LC K++ GAC G+ C FAHG+ +LR ++ R
Sbjct: 268 MFKTELCNKWEETGACPYGDQCQFAHGVAELR-------PVIRHPR-------------- 306
Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
+K ++C+ G CPYG RC+F H
Sbjct: 307 ----YKTQVCRMVLAGGVCPYGHRCHFRH 331
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQVI 261
+KT+LC KW + G CP+G++C FAHG +EL+ +
Sbjct: 269 FKTELCNKWEETGACPYGDQCQFAHGVAELRPV 301
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 40/123 (32%)
Query: 132 GGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYR 191
G + EE G ++ + + K +LC K+ CPYGD+C F H
Sbjct: 248 GVKKEEPPMGGLEFEVYNQGMFKTELCNKWEETGACPYGDQCQFAH-------------- 293
Query: 192 ESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLC-IKWTQGQCPFGEKCH 250
AE RPV ++ +KT++C + G CP+G +CH
Sbjct: 294 --------------------GVAE-LRPV----IRHPRYKTQVCRMVLAGGVCPYGHRCH 328
Query: 251 FAH 253
F H
Sbjct: 329 FRH 331
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 95 LCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHK 154
+C F+ G C G++C F+H ++ R W EEDRSS WD D K
Sbjct: 135 VCRAFQRGECTRGDSCKFSH--DEKRAANTGWGH-------EEDRSS--KWDHD-KNREG 182
Query: 155 MKLCKKFYNGEECPYGDRCNFLHEDP 180
+C+ F G EC GD C F H++
Sbjct: 183 RGVCRAFQRG-ECTRGDSCKFSHDEK 207
>sp|Q12000|TMA46_YEAST Translation machinery-associated protein 46 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TMA46 PE=1
SV=2
Length = 345
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 34/197 (17%)
Query: 16 QSYSAGSDAIGVWPQFSMSDEQQYDRLSQY-----DQQPPFK---RPRNYEDNESNSATY 67
Q+ +AG V F M ++ + ++ +Y Q P K R + E+ + A
Sbjct: 8 QAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEE 67
Query: 68 PPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQ 127
NP + + G+ K+ +CA FK G C G C F+H + R+ +
Sbjct: 68 AERRALFNPVADQRVRAGVDP---KSMVCALFKLGNCNKGAKCKFSHDLNVGRRMEK--K 122
Query: 128 ELVGGGRAEEDRSSGGNWDDDQ--KIIHKM---------KLCKKFYNGEE---------C 167
+L R+E++ + NWD+++ K+I K+CK F E C
Sbjct: 123 DLYQDTRSEKENDTMDNWDEEKLRKVILSKHGNPKTTTDKVCKYFIEAVENGKYGWFWIC 182
Query: 168 PY-GDRCNFLHEDPAKF 183
P GD+C + H P F
Sbjct: 183 PNGGDKCMYRHSLPEGF 199
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 153 HKMKLCKKFYN-GEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCS 211
HK KLC ++Y+ G CP G+ C + H + DD S+++ G S +
Sbjct: 378 HKTKLCAEYYSRGLGCPRGNTCKYAHGE-----DDLRLVVAVSSLADAGEGSSSSDSSFA 432
Query: 212 NQAEGNRPVGSNCVKPVYWKTKLCIKWTQG-QCPFGEKCHFAHGQSEL 258
++ +KTKLC +T G C F C FAHG+ EL
Sbjct: 433 ALGGEDK-----------YKTKLCKTFTSGGLCLFAANCRFAHGEVEL 469
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 92 KTRLCAKF--KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
KT+LCA++ + C G C +AHG +DLR G + SS +
Sbjct: 379 KTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVVAVSSLADAGEGSSSSDSSFAALGGED 438
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
K +K KLCK F +G C + C F H
Sbjct: 439 K--YKTKLCKTFTSGGLCLFAANCRFAH 464
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 34/88 (38%)
Query: 91 FKTRLCAKFKHGA-CRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
+KT+LC F G C NC FAHG +L + P W
Sbjct: 440 YKTKLCKTFTSGGLCLFAANCRFAHGEVELGKKEPCWY---------------------- 477
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
F++G+ CP GD C F H
Sbjct: 478 -----------FFSGQTCPRGDTCGFRH 494
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 231 KTKLCIKW-TQGQ-CPFGEKCHFAHGQSELQVI 261
KTKLC ++ ++G CP G C +AHG+ +L+++
Sbjct: 379 KTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLV 411
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 40/106 (37%)
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGS 209
K ++K +LC+ F CPYG +C F H G V S
Sbjct: 167 KQLYKTELCESFTLKGSCPYGSKCQFAH----------------------GLGELKVKKS 204
Query: 210 CSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHG 254
C N ++TK C+ W + G CP+G +C F HG
Sbjct: 205 CKN-----------------FRTKPCVNWEKLGYCPYGRRCCFKHG 233
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 230 WKTKLCIKWT-QGQCPFGEKCHFAHGQSELQV 260
+KT+LC +T +G CP+G KC FAHG EL+V
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELKV 201
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 26/91 (28%)
Query: 90 FFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDD 148
+KT LC F G+C G C FAHG+ +L+ + S N+
Sbjct: 169 LYKTELCESFTLKGSCPYGSKCQFAHGLGELKV-----------------KKSCKNF--- 208
Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLHED 179
+ K C + CPYG RC F H D
Sbjct: 209 -----RTKPCVNWEKLGYCPYGRRCCFKHGD 234
>sp|Q6IDS6|C3H35_ARATH E3 ubiquitin-protein ligase makorin OS=Arabidopsis thaliana GN=MKRN
PE=2 SV=1
Length = 323
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 59/163 (36%), Gaps = 45/163 (27%)
Query: 95 LCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHK 154
LC F HG+C GENC F+H +D PPN
Sbjct: 6 LCKFFVHGSCLKGENCEFSHDSKD----PPN----------------------------- 32
Query: 155 MKLCKKFYNGEECPYGDRCNFLHEDPAK---FRDDSGRYRESSAISIGTTGPPVVTGSCS 211
+C FY C YG RC + H A DS ES SI TT P
Sbjct: 33 -NVC-TFYQKRICLYGSRCRYDHVRAASNLPLSSDS----ESLDRSISTT-PSRHLQQQG 85
Query: 212 NQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHG 254
+ +G++ C+ P + +C G CP G +C HG
Sbjct: 86 DNNDGDKSSNVYCIHPREY--PICSFAAAGDCPRGNQCPHMHG 126
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 33/115 (28%)
Query: 91 FKTRLCAKFKH-GACRNGENCNFAHGMEDLRQP----------PP--------------- 124
+KTRLC F+ G C +NC +AHG ++LR P PP
Sbjct: 99 YKTRLCDAFRREGYCPYNDNCTYAHGQDELRVPRRRQEYYSRDPPRERRDSRSRRDDVDT 158
Query: 125 --NWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
N +E+R N ++ ++C F G C YG RC F+H
Sbjct: 159 TINRSSSSASKHHDENRRPSNNHGSS----NRRQICHNFERG-NCRYGPRCRFIH 208
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 230 WKTKLCIKWT-QGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNP 272
+KT+LC + +G CP+ + C +AHGQ EL+V R E + +P
Sbjct: 99 YKTRLCDAFRREGYCPYNDNCTYAHGQDELRVPRRRQEYYSRDP 142
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
Query: 148 DQKIIHKMKLCKKFYNGEECPYGDRCNFLH----------------EDPAKFRDDSGRYR 191
D+ +K +LC F CPY D C + H DP + R DS R
Sbjct: 94 DKHTEYKTRLCDAFRREGYCPYNDNCTYAHGQDELRVPRRRQEYYSRDPPRERRDSRSRR 153
Query: 192 ESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHF 251
+ +I + N+ N SN + ++C + +G C +G +C F
Sbjct: 154 DDVDTTINRSSSSASKHHDENRRPSNNHGSSN-------RRQICHNFERGNCRYGPRCRF 206
Query: 252 AH 253
H
Sbjct: 207 IH 208
>sp|Q8GW05|C3H47_ORYSJ Zinc finger CCCH domain-containing protein 47 OS=Oryza sativa
subsp. japonica GN=Os07g0138400 PE=2 SV=1
Length = 388
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 85 GITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGR 134
G+ N K LC+K++ G C NG C ++HG E+ R P + GGGR
Sbjct: 316 GVANAHHKIALCSKWRKGRCHNGAACRYSHGEEEQRIVP--EMRVGGGGR 363
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 221 GSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNP 272
G+ V + K LC KW +G+C G C ++HG+ E +++ G G P
Sbjct: 313 GAMGVANAHHKIALCSKWRKGRCHNGAACRYSHGEEEQRIVPEMRVGGGGRP 364
>sp|Q5VR07|C3H1_ORYSJ Zinc finger CCCH domain-containing protein 1 OS=Oryza sativa subsp.
japonica GN=Os01g0174600 PE=2 SV=1
Length = 279
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 27/121 (22%)
Query: 88 NIFFKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGR-------AEEDR 139
+F+KTR+C F G C + C FAHG E+LR P+ GG R A
Sbjct: 54 KLFYKTRVCETFVTSGRCMFEDGCTFAHGDEELR---PSLTACAGGWRKPSPSLSAAAPP 110
Query: 140 SSGGNWDDDQKIIHKM----------------KLCKKFYNGEECPYGDRCNFLHEDPAKF 183
+ +++H++ K+C +F + C +G+ C F H A+
Sbjct: 111 VAVAPTPPPAQVVHELLARGSGSGGGGHRAITKVCFEFRDKGICYFGETCAFPHVSAAEI 170
Query: 184 R 184
R
Sbjct: 171 R 171
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
Query: 134 RAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHED----PAKFRDDSGR 189
+A E S G ++ +K+ +K ++C+ F C + D C F H D P+ G
Sbjct: 38 KAVEPESGGFAYEPPEKLFYKTRVCETFVTSGRCMFEDGCTFAHGDEELRPSLTACAGGW 97
Query: 190 YRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK--TKLCIKWT-QGQCPFG 246
+ S ++S V Q + + TK+C ++ +G C FG
Sbjct: 98 RKPSPSLSAAAPPVAVAPTPPPAQVVHELLARGSGSGGGGHRAITKVCFEFRDKGICYFG 157
Query: 247 EKCHFAH 253
E C F H
Sbjct: 158 ETCAFPH 164
>sp|Q69KP0|C3H58_ORYSJ Putative zinc finger CCCH domain-containing protein 58 OS=Oryza
sativa subsp. japonica GN=Os09g0305900 PE=4 SV=1
Length = 252
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 85 GITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSS 141
G+ N K+ LC K++ G C NG C +AHG ED R P + GGG + RSS
Sbjct: 32 GVAN--HKSVLCMKWREGRCHNGVACRYAHGEEDQRIVP--EMRVGGGGTSMHARSS 84
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 231 KTKLCIKWTQGQCPFGEKCHFAHGQSELQVI 261
K+ LC+KW +G+C G C +AHG+ + +++
Sbjct: 37 KSVLCMKWREGRCHNGVACRYAHGEEDQRIV 67
>sp|Q6H7U2|C3H13_ORYSJ Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa
subsp. japonica GN=Os02g0161200 PE=2 SV=1
Length = 426
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 91 FKTRLCAKFKHGACRNGENCNFAHGMEDLRQPP 123
+KT+LCA ++ G C N + C+FAHG D+R+PP
Sbjct: 11 YKTKLCALWQRGNC-NRDTCSFAHGHGDIRRPP 42
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 230 WKTKLCIKWTQGQCPFGEKCHFAHGQSELQ 259
+KTKLC W +G C + C FAHG +++
Sbjct: 11 YKTKLCALWQRGNCN-RDTCSFAHGHGDIR 39
>sp|Q59T36|YTH1_CANAL mRNA 3'-end-processing protein YTH1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=YTH1 PE=3 SV=1
Length = 215
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 157 LCKKFYNGEECPYGDRCNFLHEDPAK------FRDDSGRYRESSAISIGTTGPPVVTGSC 210
+CK + G C GD C FLHE + F +G ++S P C
Sbjct: 70 VCKHWLRGL-CKKGDHCEFLHEYNLRKMPECLFYSKNGYCTQTSECLYLHVDPQSKIPEC 128
Query: 211 SNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIGGRT 265
N +G G NC K + + LC + G CP G +C F H + + + R
Sbjct: 129 LNYNQGFCSEGPNC-KNRHVRRVLCPLYLYGFCPKGPECEFTHPKFDFHNLNLRI 182
>sp|Q58A45|PAN3_HUMAN PAB-dependent poly(A)-specific ribonuclease subunit 3 OS=Homo
sapiens GN=PAN3 PE=1 SV=3
Length = 887
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 154 KMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPV 205
K+K C+ + + C YG+ C FLHEDPA G S+++ + G PV
Sbjct: 45 KLKYCRYYAKDKTCFYGEECQFLHEDPAA-GAAPGLGLHSNSVPLALAGAPV 95
>sp|Q7JWR9|ZC3HF_DROME Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila
melanogaster GN=CG8635 PE=1 SV=1
Length = 404
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 28/131 (21%)
Query: 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDD--Q 149
K+ +CA FK G C G+ C F+H DL Q + + +ED NWDD +
Sbjct: 96 KSVVCAFFKQGTCTKGDKCKFSH---DLSQENKVEKRSIYVDMRDED-DPMTNWDDAKLK 151
Query: 150 KIIHKMK-----------LCKKFYNGE---------ECPYGDRCNFLHEDPAKF--RDDS 187
+++ K +CK F ECP G +C + H PA + + D
Sbjct: 152 EVVEKKSSGEKQRPTTDIICKFFLEAVEKSKYGWFWECPNGGKCIYRHALPAGYVLKRDK 211
Query: 188 GRYRESSAISI 198
+ + + IS+
Sbjct: 212 KKEEKPTEISL 222
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 41/129 (31%)
Query: 77 SMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAE 136
++ LP+ G T K C F HG C+ G+NC ++H DL P
Sbjct: 9 TVTLPVTGGWT----KHVTCRYFMHGLCKEGDNCRYSH---DLTSSKP------------ 49
Query: 137 EDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAI 196
+CK F G C +G+RC F H P K + S +
Sbjct: 50 -----------------AAMMCKFFQKG-NCVFGERCRFEHCKPTKSEEVSN----PQML 87
Query: 197 SIGTTGPPV 205
+ +T PP+
Sbjct: 88 LLSSTPPPI 96
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 38/137 (27%)
Query: 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKI 151
K C F HG C+ GENC ++H + +Q
Sbjct: 20 KHVTCRYFMHGLCKEGENCRYSHDLSSCKQ------------------------------ 49
Query: 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRES---SAISIGTTGPPVVTG 208
+CK F G C +GDRC + H P+K +D+ + S +A + T PV G
Sbjct: 50 ---TMICKFFQKG-CCAFGDRCRYEHTKPSK-QDEVPSSKPSMPLTAAPLAGTPEPVSDG 104
Query: 209 SCSNQAEGNRPVGSNCV 225
+P GS V
Sbjct: 105 PGGTTGAQEKPQGSGAV 121
>sp|Q803J8|ZC3HF_DANRE Zinc finger CCCH domain-containing protein 15 OS=Danio rerio
GN=zc3h15 PE=2 SV=1
Length = 433
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 28/118 (23%)
Query: 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEE--DRSSGGNWDDD- 148
K+ LCA FK G C G+ C F+H + R+ + L GR +E ++ + NWD+
Sbjct: 101 KSVLCAFFKQGQCTKGDKCKFSHDLSLERKCEK--RSLYVDGRDDELLEKDTMENWDEKK 158
Query: 149 -QKIIHKMK------------LCKKFYNGEE---------CP-YGDRCNFLHEDPAKF 183
+++++K +CK F + E CP GD C + H P F
Sbjct: 159 LEEVVNKKHGEAEKKKAKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPVGF 216
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 231 KTKLCIKWTQGQCPFGEKCHFAHGQS 256
K+ LC + QGQC G+KC F+H S
Sbjct: 101 KSVLCAFFKQGQCTKGDKCKFSHDLS 126
>sp|Q93618|ZC3HF_CAEEL Zinc finger CCCH domain-containing protein 15 homolog
OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3
Length = 374
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 21/106 (19%)
Query: 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ-- 149
K+ LC FK G C G C F+H + + Q E+D + NWD D+
Sbjct: 92 KSLLCVFFKQGLCGKGAKCKFSHDLA-VAQKTAKKNLYADSREVEKDEETNENWDSDKLN 150
Query: 150 KIIHKMK--------LCKKFYNGE---------ECPY-GDRCNFLH 177
++++K +CK F ECP G++C + H
Sbjct: 151 EVVNKKNKNKHMIDIVCKYFLEAVENNKYGWFWECPNGGEKCQYRH 196
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 218 RPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAH 253
+PV K V K+ LC+ + QG C G KC F+H
Sbjct: 79 KPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSH 114
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=yth-1 PE=3 SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 54/159 (33%), Gaps = 58/159 (36%)
Query: 91 FKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQK 150
F + +C + G C+ GE+C F H +
Sbjct: 94 FGSLVCKHWLRGLCKKGESCEFLH----------------------------------EY 119
Query: 151 IIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSC 210
+ KM C F C GD C +LH DP + PP C
Sbjct: 120 NLRKMPECNFFVRNGYCSNGDECLYLHIDPL------------------SRLPP-----C 156
Query: 211 SNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKC 249
+ G P+G C K +++ KLC+ + G CP G+ C
Sbjct: 157 PHYERGFCPLGPRCDKK-HFRRKLCLYYLAGFCPDGKGC 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,050,790
Number of Sequences: 539616
Number of extensions: 6576399
Number of successful extensions: 11518
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 10680
Number of HSP's gapped (non-prelim): 771
length of query: 338
length of database: 191,569,459
effective HSP length: 118
effective length of query: 220
effective length of database: 127,894,771
effective search space: 28136849620
effective search space used: 28136849620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)