Query 019627
Match_columns 338
No_of_seqs 213 out of 1578
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:16:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1595 CCCH-type Zn-finger pr 99.4 1.5E-13 3.3E-18 137.8 8.0 101 90-263 198-299 (528)
2 KOG1677 CCCH-type Zn-finger pr 99.4 2.2E-13 4.7E-18 132.3 6.7 118 94-261 87-207 (332)
3 KOG1677 CCCH-type Zn-finger pr 99.2 8E-12 1.7E-16 121.4 4.4 82 83-183 122-205 (332)
4 COG5063 CTH1 CCCH-type Zn-fing 99.1 3.3E-11 7.3E-16 113.5 4.9 116 86-263 221-346 (351)
5 COG5063 CTH1 CCCH-type Zn-fing 99.0 8.1E-10 1.8E-14 104.3 8.9 133 89-260 111-303 (351)
6 KOG1040 Polyadenylation factor 99.0 1.6E-10 3.5E-15 111.8 4.2 113 90-260 74-187 (325)
7 COG5084 YTH1 Cleavage and poly 98.6 5.9E-07 1.3E-11 85.5 13.2 89 90-258 101-192 (285)
8 KOG1595 CCCH-type Zn-finger pr 98.6 6.3E-08 1.4E-12 97.8 5.7 134 86-262 110-266 (528)
9 KOG1763 Uncharacterized conser 98.5 1.1E-08 2.3E-13 96.4 -2.6 98 64-182 75-193 (343)
10 PF00642 zf-CCCH: Zinc finger 98.5 3.2E-08 6.9E-13 61.7 0.3 25 91-115 1-26 (27)
11 PF00642 zf-CCCH: Zinc finger 98.4 5.9E-08 1.3E-12 60.5 0.2 26 230-255 1-27 (27)
12 KOG1492 C3H1-type Zn-finger pr 98.3 4.2E-07 9E-12 83.2 2.6 105 93-256 206-313 (377)
13 smart00356 ZnF_C3H1 zinc finge 98.1 1.2E-06 2.6E-11 53.9 1.9 26 91-116 2-27 (27)
14 KOG1492 C3H1-type Zn-finger pr 98.1 1.7E-06 3.8E-11 79.2 3.7 105 92-258 232-337 (377)
15 COG5252 Uncharacterized conser 98.0 5.9E-07 1.3E-11 82.5 -1.2 83 92-182 84-178 (299)
16 KOG1040 Polyadenylation factor 98.0 3.8E-06 8.3E-11 81.6 3.8 115 94-260 46-162 (325)
17 smart00356 ZnF_C3H1 zinc finge 98.0 4.8E-06 1E-10 51.2 2.1 26 230-255 2-27 (27)
18 KOG2494 C3H1-type Zn-finger pr 97.9 7.2E-06 1.6E-10 78.8 3.5 63 88-181 32-95 (331)
19 KOG2494 C3H1-type Zn-finger pr 97.9 5.1E-06 1.1E-10 79.8 1.7 61 155-260 37-98 (331)
20 KOG4791 Uncharacterized conser 97.6 3.8E-05 8.3E-10 76.9 3.3 87 94-262 4-91 (667)
21 KOG2333 Uncharacterized conser 97.3 0.0001 2.2E-09 74.4 1.7 64 154-258 75-143 (614)
22 KOG2333 Uncharacterized conser 96.4 0.0011 2.4E-08 67.1 0.8 59 92-178 75-137 (614)
23 COG5084 YTH1 Cleavage and poly 96.4 0.0072 1.6E-07 57.9 6.2 54 93-180 134-190 (285)
24 KOG2185 Predicted RNA-processi 96.0 0.0029 6.2E-08 62.7 1.3 36 227-262 135-174 (486)
25 PF14608 zf-CCCH_2: Zinc finge 95.9 0.0044 9.6E-08 35.3 1.5 19 95-115 1-19 (19)
26 KOG4791 Uncharacterized conser 95.7 0.0074 1.6E-07 60.9 3.1 109 94-256 33-142 (667)
27 KOG2185 Predicted RNA-processi 95.7 0.004 8.6E-08 61.7 1.1 25 93-117 140-164 (486)
28 PF14608 zf-CCCH_2: Zinc finge 95.5 0.0087 1.9E-07 34.1 1.7 19 234-254 1-19 (19)
29 COG5252 Uncharacterized conser 95.0 0.0062 1.3E-07 56.5 -0.1 30 152-182 82-111 (299)
30 COG5152 Uncharacterized conser 94.8 0.011 2.3E-07 53.7 0.8 31 230-260 139-170 (259)
31 COG5152 Uncharacterized conser 93.7 0.028 6E-07 51.0 1.1 32 89-120 137-169 (259)
32 KOG1813 Predicted E3 ubiquitin 90.4 0.085 1.8E-06 50.6 0.2 29 230-258 184-213 (313)
33 KOG1763 Uncharacterized conser 90.1 0.075 1.6E-06 50.9 -0.5 33 229-261 89-121 (343)
34 KOG1039 Predicted E3 ubiquitin 88.3 0.17 3.7E-06 49.9 0.5 24 94-117 9-32 (344)
35 KOG3702 Nuclear polyadenylated 87.4 1.2 2.7E-05 46.9 6.2 22 232-256 625-646 (681)
36 KOG1813 Predicted E3 ubiquitin 87.1 0.2 4.3E-06 48.1 0.2 32 88-119 181-213 (313)
37 KOG1039 Predicted E3 ubiquitin 86.7 0.25 5.4E-06 48.8 0.6 24 233-256 9-32 (344)
38 PF10650 zf-C3H1: Putative zin 82.8 0.72 1.6E-05 27.6 1.2 21 94-115 1-22 (23)
39 PF10650 zf-C3H1: Putative zin 81.9 0.84 1.8E-05 27.4 1.2 20 234-254 2-22 (23)
40 KOG2202 U2 snRNP splicing fact 77.7 0.97 2.1E-05 42.7 0.8 27 90-116 149-175 (260)
41 TIGR02996 rpt_mate_G_obs repea 72.3 0.8 1.7E-05 31.5 -0.9 9 317-325 20-28 (42)
42 KOG0153 Predicted RNA-binding 70.7 1.9 4.1E-05 42.4 0.9 24 233-256 162-185 (377)
43 KOG2202 U2 snRNP splicing fact 60.0 4 8.7E-05 38.6 0.9 28 228-255 148-175 (260)
44 KOG0153 Predicted RNA-binding 59.2 4.4 9.5E-05 40.0 1.0 25 93-117 161-185 (377)
45 PF05129 Elf1: Transcription e 41.4 6.1 0.00013 30.9 -0.9 11 316-326 67-77 (81)
46 KOG3214 Uncharacterized Zn rib 39.2 7.3 0.00016 31.8 -0.8 15 317-331 69-83 (109)
47 KOG2135 Proteins containing th 37.6 46 0.001 34.3 4.4 33 87-119 206-239 (526)
48 PRK14892 putative transcriptio 32.3 9.4 0.0002 31.1 -1.2 10 317-326 64-73 (99)
49 KOG3702 Nuclear polyadenylated 29.3 1.1E+02 0.0024 32.9 5.6 22 94-118 545-566 (681)
50 PF08098 ATX_III: Anemonia sul 28.5 29 0.00063 21.2 0.8 15 234-250 8-22 (27)
No 1
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.45 E-value=1.5e-13 Score=137.82 Aligned_cols=101 Identities=30% Similarity=0.604 Sum_probs=85.2
Q ss_pred ccccccccccccccCCCCCCCCccc-CCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCC
Q 019627 90 FFKTRLCAKFKHGACRNGENCNFAH-GMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECP 168 (338)
Q Consensus 90 ~~KT~lC~~f~~G~C~~G~~C~FaH-~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~ 168 (338)
-||++.|.. +.|+.|..|.|+| +....|+.|. +..|....|..| .+|.|.
T Consensus 198 ~fKir~C~R---~~shDwteCPf~HpgEkARRRDPR-------------------------kyhYs~tpCPef-rkG~C~ 248 (528)
T KOG1595|consen 198 SFKIRRCSR---PRSHDWTECPFAHPGEKARRRDPR-------------------------KYHYSSTPCPEF-RKGSCE 248 (528)
T ss_pred eeeecccCC---ccCCCcccCCccCCCcccccCCcc-------------------------cccccCccCccc-ccCCCC
Confidence 479999954 5899999999999 6666666553 236788999988 569999
Q ss_pred CCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccCCCCCC
Q 019627 169 YGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEK 248 (338)
Q Consensus 169 ~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~C~~G~~ 248 (338)
.||.|.|+|+..|. ..+|..|||++|++- |+|++ ..
T Consensus 249 rGD~CEyaHgvfEc-----------------------------------------wLHPa~YRT~~CkDg--~~C~R-rv 284 (528)
T KOG1595|consen 249 RGDSCEYAHGVFEC-----------------------------------------WLHPARYRTRKCKDG--GYCPR-RV 284 (528)
T ss_pred CCCccccccceehh-----------------------------------------hcCHHHhccccccCC--CCCcc-ce
Confidence 99999999998763 356789999999997 99999 99
Q ss_pred CccCCCccccccCCC
Q 019627 249 CHFAHGQSELQVIGG 263 (338)
Q Consensus 249 C~FaHg~~elr~~~~ 263 (338)
|.|||..+|||....
T Consensus 285 CfFAH~~eqLR~l~~ 299 (528)
T KOG1595|consen 285 CFFAHSPEQLRPLPP 299 (528)
T ss_pred EeeecChHHhcccCC
Confidence 999999999998764
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.42 E-value=2.2e-13 Score=132.28 Aligned_cols=118 Identities=31% Similarity=0.637 Sum_probs=87.7
Q ss_pred ccccccc-cccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC-CC
Q 019627 94 RLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY-GD 171 (338)
Q Consensus 94 ~lC~~f~-~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~-G~ 171 (338)
..|.+|. ++.|.++..|+|.|...+.+..... ..+.......+|+.+|..|...|.|.| |+
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~-----------------~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge 149 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR-----------------RSRGERKPERYKTPLCRSFRKSGTCKYRGE 149 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCcc-----------------ccccccCcccccCCcceeeecCccccccCc
Confidence 6799997 7999999999999998555543210 001122334789999999999999999 99
Q ss_pred CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc-ccccCCCCCCCc
Q 019627 172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH 250 (338)
Q Consensus 172 ~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f-~~G~C~~G~~C~ 250 (338)
+|+|+|...+..... ++ +. ......|||++|.+| .+|.|+||.+|+
T Consensus 150 ~crfah~~~e~r~~~----------~~-------------~~----------~~~~~~~kt~lC~~f~~tG~C~yG~rC~ 196 (332)
T KOG1677|consen 150 QCRFAHGLEELRLPS----------SE-------------NQ----------VGNPPKYKTKLCPKFQKTGLCKYGSRCR 196 (332)
T ss_pred hhhhcCCcccccccc----------cc-------------hh----------hcCCCCCCCcCCCccccCCCCCCCCcCe
Confidence 999999976532100 00 00 112357999999999 789999999999
Q ss_pred cCCCccccccC
Q 019627 251 FAHGQSELQVI 261 (338)
Q Consensus 251 FaHg~~elr~~ 261 (338)
|+|+..+.+..
T Consensus 197 F~H~~~~~~~~ 207 (332)
T KOG1677|consen 197 FIHGEPEDRAS 207 (332)
T ss_pred ecCCCcccccc
Confidence 99999877754
No 3
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.21 E-value=8e-12 Score=121.36 Aligned_cols=82 Identities=39% Similarity=0.769 Sum_probs=65.4
Q ss_pred CCCCcccccccccccccc-cccCCC-CCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhccccccccc
Q 019627 83 NKGITNIFFKTRLCAKFK-HGACRN-GENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKK 160 (338)
Q Consensus 83 ~~~~~~~~~KT~lC~~f~-~G~C~~-G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~ 160 (338)
........|||.+|.+|. .|.|+| |++|+|+|+.++++.+. .+. .......|||++|.+
T Consensus 122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~----~~~---------------~~~~~~~~kt~lC~~ 182 (332)
T KOG1677|consen 122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS----SEN---------------QVGNPPKYKTKLCPK 182 (332)
T ss_pred ccccCcccccCCcceeeecCccccccCchhhhcCCcccccccc----cch---------------hhcCCCCCCCcCCCc
Confidence 344555689999999998 899999 99999999999998531 000 011235899999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCccc
Q 019627 161 FYNGEECPYGDRCNFLHEDPAKF 183 (338)
Q Consensus 161 f~~~G~C~~G~~C~F~H~~~e~~ 183 (338)
|..+|.|+||.+|+|+|...+..
T Consensus 183 f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 183 FQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred cccCCCCCCCCcCeecCCCcccc
Confidence 99999999999999999977543
No 4
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.14 E-value=3.3e-11 Score=113.53 Aligned_cols=116 Identities=27% Similarity=0.549 Sum_probs=92.4
Q ss_pred Cccccccc--ccccccc-cccCCC---CCCCCcc---cCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhccccc
Q 019627 86 ITNIFFKT--RLCAKFK-HGACRN---GENCNFA---HGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMK 156 (338)
Q Consensus 86 ~~~~~~KT--~lC~~f~-~G~C~~---G~~C~Fa---H~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~ 156 (338)
.....||| .+|.-|. .|+|.+ |+.|+|+ |++.++.. +..+..|||+
T Consensus 221 ~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~-------------------------k~k~~~frTe 275 (351)
T COG5063 221 QNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS-------------------------KKKKQNFRTE 275 (351)
T ss_pred ccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccc-------------------------cccccccccC
Confidence 34457899 9999996 899999 9999999 99887742 1234579999
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCc
Q 019627 157 LCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCI 236 (338)
Q Consensus 157 lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~ 236 (338)
+|.+|..-|.|+||.+|.|.|++.+.+... ++. ...|+...|+
T Consensus 276 Pcinwe~sGyc~yg~Rc~F~hgd~~~ie~~----~~~---------------------------------~~~y~~~~cr 318 (351)
T COG5063 276 PCINWEKSGYCPYGLRCCFKHGDDSDIEMY----EEA---------------------------------SLGYLDGPCR 318 (351)
T ss_pred CccchhhcccCccccccccccCChhhcccc----ccc---------------------------------cccccccccc
Confidence 999999999999999999999987754321 111 1246667799
Q ss_pred cc-ccccCCCCCCCccCCCccccccCCC
Q 019627 237 KW-TQGQCPFGEKCHFAHGQSELQVIGG 263 (338)
Q Consensus 237 ~f-~~G~C~~G~~C~FaHg~~elr~~~~ 263 (338)
-+ ..|.|+.|-+|.|.|....+....+
T Consensus 319 t~~~~g~~p~g~~~c~~~dkkn~~~s~~ 346 (351)
T COG5063 319 TRAKGGAFPSGGAVCKSFDKKNLDFSVK 346 (351)
T ss_pred cccccCccCCCCchhhccccchhhhhhh
Confidence 99 8999999999999999887765543
No 5
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.03 E-value=8.1e-10 Score=104.29 Aligned_cols=133 Identities=25% Similarity=0.449 Sum_probs=89.8
Q ss_pred cccccccccccc-cccCCCCCCCCcccCCCCcCCCCCC-----------cccccCCC-----------CCc------ccC
Q 019627 89 IFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPN-----------WQELVGGG-----------RAE------EDR 139 (338)
Q Consensus 89 ~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~r~pp~~-----------~~el~~~~-----------r~~------~~~ 139 (338)
.+|||.+|..-. .+.|+++++|.|+|.-...+..... |.+-..++ .++ .+.
T Consensus 111 g~~kt~~l~ss~~~~~~~~p~~n~fahs~~issl~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~rk 190 (351)
T COG5063 111 GLYKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQRK 190 (351)
T ss_pred ccccchhhhccccccccccCCCCcCCCccccccccccCccccccceeEEecCCccccccccccccccccccCcchhhccC
Confidence 478999998765 6899999999999987766543221 11111111 000 000
Q ss_pred C----------CCCCC------------Ccchhhcccc--cccccccCCCCCCC---CCCCCCC---CCCCccccCCCcc
Q 019627 140 S----------SGGNW------------DDDQKIIHKM--KLCKKFYNGEECPY---GDRCNFL---HEDPAKFRDDSGR 189 (338)
Q Consensus 140 ~----------~~~~~------------~~~~~~~~Kt--~lCk~f~~~G~C~~---G~~C~F~---H~~~e~~r~~s~~ 189 (338)
+ .+... .+..+.+|++ .+|..|...|.|++ |+.|.|+ |+..+-.
T Consensus 191 pks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~------ 264 (351)
T COG5063 191 PKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELK------ 264 (351)
T ss_pred cccCcCccccccccccccCchhhhhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccc------
Confidence 0 00000 1123457888 89999999999999 9999999 8853310
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc-ccccCCCCCCCccCCCcccccc
Q 019627 190 YRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQV 260 (338)
Q Consensus 190 ~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f-~~G~C~~G~~C~FaHg~~elr~ 260 (338)
+ ......|+|+.|..| ..|+|++|.+|.|+||+.++..
T Consensus 265 --------------------------~-------k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie 303 (351)
T COG5063 265 --------------------------S-------KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIE 303 (351)
T ss_pred --------------------------c-------cccccccccCCccchhhcccCccccccccccCChhhcc
Confidence 0 012246899999999 9999999999999999976543
No 6
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.03 E-value=1.6e-10 Score=111.79 Aligned_cols=113 Identities=31% Similarity=0.612 Sum_probs=81.2
Q ss_pred ccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 019627 90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY 169 (338)
Q Consensus 90 ~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~ 169 (338)
.+++++|++|+.|.|..||.|.|+|.. ++. |+..|.+|+..|.|..
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~-~~~---------------------------------k~rec~ff~~~g~c~~ 119 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY-DLT---------------------------------KMRECKFFSLFGECTN 119 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh-hhc---------------------------------cccccccccccccccc
Confidence 678999999999999999999999988 443 3457999999999999
Q ss_pred CCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccCCCCCC-
Q 019627 170 GDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEK- 248 (338)
Q Consensus 170 G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~C~~G~~- 248 (338)
+..|.|.|+++......+..+.. |. .+. ....+-..++..+|..|..|.|+-|..
T Consensus 120 ~~~c~y~h~dpqt~~k~c~~~~~------g~----------------c~~--g~~c~~~h~~~~~c~~y~~gfC~~g~q~ 175 (325)
T KOG1040|consen 120 GKDCPYLHGDPQTAIKKCKWYKE------GF----------------CRG--GPSCKKRHERKVLCPPYNAGFCPKGPQR 175 (325)
T ss_pred ccCCcccCCChhhhhhccchhhh------cc----------------CCC--cchhhhhhhcccCCCchhhhhccCCCCc
Confidence 99999999985321111111110 00 000 001112234458899999999999988
Q ss_pred CccCCCcccccc
Q 019627 249 CHFAHGQSELQV 260 (338)
Q Consensus 249 C~FaHg~~elr~ 260 (338)
|-+.|....+..
T Consensus 176 c~~~hp~~~~~~ 187 (325)
T KOG1040|consen 176 CDMLHPEFQQPP 187 (325)
T ss_pred ccccCCCCCCCh
Confidence 999999977665
No 7
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.62 E-value=5.9e-07 Score=85.51 Aligned_cols=89 Identities=28% Similarity=0.703 Sum_probs=71.5
Q ss_pred ccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 019627 90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY 169 (338)
Q Consensus 90 ~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~ 169 (338)
.+..++|++|..|.|+.|..|.|+|+..-++. -+..|+.|...|.|..
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s--------------------------------~~~~c~~Fs~~G~cs~ 148 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSS--------------------------------QGPPCRSFSLKGSCSS 148 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCcccc--------------------------------cCCCcccccccceecc
Confidence 57889999999999999999999999875531 1347998889999999
Q ss_pred CCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccc---cccCCCC
Q 019627 170 GDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWT---QGQCPFG 246 (338)
Q Consensus 170 G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~---~G~C~~G 246 (338)
|..|.|.|.++... ...|.+|. .+.|+.|
T Consensus 149 g~~c~~~h~dp~~~------------------------------------------------~~~~~~~~~~~~~f~p~g 180 (285)
T COG5084 149 GPSCGYSHIDPDSF------------------------------------------------AGNCDQYSGATYGFCPLG 180 (285)
T ss_pred CCCCCccccCcccc------------------------------------------------cccccccCcccccccCCC
Confidence 99999999985421 11255554 7899999
Q ss_pred CCCccCCCcccc
Q 019627 247 EKCHFAHGQSEL 258 (338)
Q Consensus 247 ~~C~FaHg~~el 258 (338)
..|+|.|+...+
T Consensus 181 ~~c~~~H~~~~~ 192 (285)
T COG5084 181 ASCKFSHTLKRV 192 (285)
T ss_pred Cccccccccccc
Confidence 999999988633
No 8
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.58 E-value=6.3e-08 Score=97.84 Aligned_cols=134 Identities=30% Similarity=0.560 Sum_probs=90.4
Q ss_pred CcccccccccccccccccC-CCCCCCCcccCCCCcCCCCCCcccccC--CCCCcc-----c----C-CCC-------CCC
Q 019627 86 ITNIFFKTRLCAKFKHGAC-RNGENCNFAHGMEDLRQPPPNWQELVG--GGRAEE-----D----R-SSG-------GNW 145 (338)
Q Consensus 86 ~~~~~~KT~lC~~f~~G~C-~~G~~C~FaH~~~e~r~pp~~~~el~~--~~r~~~-----~----~-~~~-------~~~ 145 (338)
+.-.+|||-.|..=..|.| ..+-.|.|+|....+|.+.....++.+ -+.+++ . . +.+ +.|
T Consensus 110 ~hL~~~k~~~~~tda~g~~~~~v~~~~~~~~~~~~r~~~~~l~e~~~~~~~~~~e~~~~~~~~~~~y~~Dp~~pdi~~~y 189 (528)
T KOG1595|consen 110 YHLRYYKTLPCVTDARGNCVKNVLHCAFAHGPNDLRPPVEDLLELQGGSGLPDDEPEVESKLDVTEYPEDPSWPDINGIY 189 (528)
T ss_pred EeccccccccCccccCCCcccCcccccccCCccccccHHHHHHhcccccCccCCCcccccccccccccCCCCcccccccc
Confidence 3445789999985558999 669999999999999877544444420 011110 0 0 112 233
Q ss_pred Ccchh--hcccccccccccCCCCCCCCCCCCCCC-CCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 019627 146 DDDQK--IIHKMKLCKKFYNGEECPYGDRCNFLH-EDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGS 222 (338)
Q Consensus 146 ~~~~~--~~~Kt~lCk~f~~~G~C~~G~~C~F~H-~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~ 222 (338)
..++. ..||++.|. .+.|..+-.|.|+| +.....|+. |
T Consensus 190 s~DeFrMy~fKir~C~----R~~shDwteCPf~HpgEkARRRDP----R------------------------------- 230 (528)
T KOG1595|consen 190 SSDEFRMYSFKIRRCS----RPRSHDWTECPFAHPGEKARRRDP----R------------------------------- 230 (528)
T ss_pred cccceEEEeeeecccC----CccCCCcccCCccCCCcccccCCc----c-------------------------------
Confidence 33443 367999996 45899999999999 544433321 1
Q ss_pred CCCCCCccccccCcccccccCCCCCCCccCCCccccccCC
Q 019627 223 NCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIG 262 (338)
Q Consensus 223 ~~~~~~~~Kt~lC~~f~~G~C~~G~~C~FaHg~~elr~~~ 262 (338)
.=.|.-..|+.|.+|.|.+||.|.|+||.-|..-+.
T Consensus 231 ----kyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHP 266 (528)
T KOG1595|consen 231 ----KYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHP 266 (528)
T ss_pred ----cccccCccCcccccCCCCCCCccccccceehhhcCH
Confidence 113556679999999999999999999998876653
No 9
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=98.48 E-value=1.1e-08 Score=96.41 Aligned_cols=98 Identities=30% Similarity=0.638 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCC
Q 019627 64 SATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGG 143 (338)
Q Consensus 64 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~ 143 (338)
.++-| ..+..+..+.| |+.+|.+|.+|+|..|+.|+|+|++...|..+. .+|+...|++
T Consensus 75 ~lfkp-~~qkv~~gvDP-----------KSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK--~dly~d~rde------- 133 (343)
T KOG1763|consen 75 ELFKP-ADQKVPKGVDP-----------KSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEK--IDLYPDTRDE------- 133 (343)
T ss_pred Hhccc-cccccccCCCc-----------hHHHHHHHhccCCCCCCcccccchHHHhhhccc--hhccccchhh-------
Confidence 34444 55555555544 999999999999999999999999998887643 2333333333
Q ss_pred CCCcch--------hhccc---ccccccccCC------C---CCCCCC-CCCCCCCCCcc
Q 019627 144 NWDDDQ--------KIIHK---MKLCKKFYNG------E---ECPYGD-RCNFLHEDPAK 182 (338)
Q Consensus 144 ~~~~~~--------~~~~K---t~lCk~f~~~------G---~C~~G~-~C~F~H~~~e~ 182 (338)
.|++.. +...+ ..+|++|... | .|+.|. .|.|.|..++.
T Consensus 134 mWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~G 193 (343)
T KOG1763|consen 134 MWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEG 193 (343)
T ss_pred hhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcc
Confidence 366431 11111 2479977441 2 399885 89999998875
No 10
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.47 E-value=3.2e-08 Score=61.65 Aligned_cols=25 Identities=52% Similarity=1.185 Sum_probs=20.4
Q ss_pred cccccccccc-cccCCCCCCCCcccC
Q 019627 91 FKTRLCAKFK-HGACRNGENCNFAHG 115 (338)
Q Consensus 91 ~KT~lC~~f~-~G~C~~G~~C~FaH~ 115 (338)
|||++|++|. +|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 6899999998 599999999999997
No 11
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.40 E-value=5.9e-08 Score=60.45 Aligned_cols=26 Identities=62% Similarity=1.372 Sum_probs=20.7
Q ss_pred cccccCccc-ccccCCCCCCCccCCCc
Q 019627 230 WKTKLCIKW-TQGQCPFGEKCHFAHGQ 255 (338)
Q Consensus 230 ~Kt~lC~~f-~~G~C~~G~~C~FaHg~ 255 (338)
||+++|++| ..|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 578999999 77999999999999974
No 12
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.27 E-value=4.2e-07 Score=83.20 Aligned_cols=105 Identities=22% Similarity=0.508 Sum_probs=65.1
Q ss_pred cccccccc-cccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 019627 93 TRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD 171 (338)
Q Consensus 93 T~lC~~f~-~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~ 171 (338)
.+.|++|. +|.|.+|..|+|.|.... ..+|.+| ..|.|...+
T Consensus 206 avycryynangicgkgaacrfvheptr------------------------------------kticpkf-lngrcnkae 248 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEPTR------------------------------------KTICPKF-LNGRCNKAE 248 (377)
T ss_pred eeEEEEecCCCcccCCceeeeeccccc------------------------------------cccChHH-hcCccCchh
Confidence 45799998 899999999999996541 1368777 457888888
Q ss_pred CCCCCCCCCccccCCCcccccccccccCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc-ccccCCCCCCC
Q 019627 172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTG-PPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKC 249 (338)
Q Consensus 172 ~C~F~H~~~e~~r~~s~~~res~~~svg~~~-~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f-~~G~C~~G~~C 249 (338)
.|.++|+.....-.++. -+-+|..- |.+.+ + +.+- .....+|..| .-|+|..|..|
T Consensus 249 dcnlsheldprripacr------yfllgkcnnpncry------v---------hihy-senapicfefakygfcelgtsc 306 (377)
T KOG1492|consen 249 DCNLSHELDPRRIPACR------YFLLGKCNNPNCRY------V---------HIHY-SENAPICFEFAKYGFCELGTSC 306 (377)
T ss_pred cCCcccccCccccchhh------hhhhccCCCCCceE------E---------EEee-cCCCceeeeehhcceecccccc
Confidence 88888886543211111 11111100 00000 0 0000 0124579999 88999999999
Q ss_pred ccCCCcc
Q 019627 250 HFAHGQS 256 (338)
Q Consensus 250 ~FaHg~~ 256 (338)
.-.|-..
T Consensus 307 knqhilq 313 (377)
T KOG1492|consen 307 KNQHILQ 313 (377)
T ss_pred ccceeee
Confidence 9888653
No 13
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.14 E-value=1.2e-06 Score=53.87 Aligned_cols=26 Identities=50% Similarity=1.100 Sum_probs=24.0
Q ss_pred cccccccccccccCCCCCCCCcccCC
Q 019627 91 FKTRLCAKFKHGACRNGENCNFAHGM 116 (338)
Q Consensus 91 ~KT~lC~~f~~G~C~~G~~C~FaH~~ 116 (338)
+|+.+|++|++|.|.+|++|+|+|+.
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence 58899999999999999999999973
No 14
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.14 E-value=1.7e-06 Score=79.17 Aligned_cols=105 Identities=23% Similarity=0.537 Sum_probs=69.6
Q ss_pred ccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 019627 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD 171 (338)
Q Consensus 92 KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~ 171 (338)
+..+|.+|++|.|.+.+.|..+|.++..|-| .|++| .-|.|. ..
T Consensus 232 rkticpkflngrcnkaedcnlsheldprrip----------------------------------acryf-llgkcn-np 275 (377)
T KOG1492|consen 232 RKTICPKFLNGRCNKAEDCNLSHELDPRRIP----------------------------------ACRYF-LLGKCN-NP 275 (377)
T ss_pred ccccChHHhcCccCchhcCCcccccCccccc----------------------------------hhhhh-hhccCC-CC
Confidence 4468999999999999999999999877654 68855 567898 58
Q ss_pred CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc-ccccCCCCCCCc
Q 019627 172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH 250 (338)
Q Consensus 172 ~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f-~~G~C~~G~~C~ 250 (338)
+|+|.|..-+.-..-+-.+..-....+|++ ......-.|.+| +.|.|.+ ..|.
T Consensus 276 ncryvhihysenapicfefakygfcelgts-------------------------cknqhilqctdyamfgscnn-pqcs 329 (377)
T KOG1492|consen 276 NCRYVHIHYSENAPICFEFAKYGFCELGTS-------------------------CKNQHILQCTDYAMFGSCNN-PQCS 329 (377)
T ss_pred CceEEEEeecCCCceeeeehhcceeccccc-------------------------cccceeeeecchhhhcCCCC-Ccce
Confidence 999999854321111111111101111110 112233459999 9999988 8999
Q ss_pred cCCCcccc
Q 019627 251 FAHGQSEL 258 (338)
Q Consensus 251 FaHg~~el 258 (338)
..||....
T Consensus 330 lyhgavsa 337 (377)
T KOG1492|consen 330 LYHGAVSA 337 (377)
T ss_pred eecceecc
Confidence 99997543
No 15
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=98.04 E-value=5.9e-07 Score=82.47 Aligned_cols=83 Identities=36% Similarity=0.791 Sum_probs=58.5
Q ss_pred ccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCccc-CCCCC-CCCcchhhcccccccccccC---CC-
Q 019627 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEED-RSSGG-NWDDDQKIIHKMKLCKKFYN---GE- 165 (338)
Q Consensus 92 KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~-~~~~~-~~~~~~~~~~Kt~lCk~f~~---~G- 165 (338)
|+.+|..|..+.|..|+.|+|+|+.++.|.... .+|+..+|+.+. -+++. .| +..-++|++|.. .|
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK--~DLYsDvRd~~ed~pl~krP~------intd~VCkffieA~e~Gk 155 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEK--PDLYSDVRDKEEDVPLGKRPW------INTDRVCKFFIEAMESGK 155 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcchHHHhhhcc--cchhhhhhhhhccCCcccCCC------CChhHHHHHHHHHHhcCC
Confidence 999999999999999999999999999887532 244455555432 23221 12 112357987743 12
Q ss_pred -----CCCCC-CCCCCCCCCCcc
Q 019627 166 -----ECPYG-DRCNFLHEDPAK 182 (338)
Q Consensus 166 -----~C~~G-~~C~F~H~~~e~ 182 (338)
.|++| .+|.|.|..++.
T Consensus 156 Ygw~W~CPng~~~C~y~H~Lp~G 178 (299)
T COG5252 156 YGWGWTCPNGNMRCSYIHKLPDG 178 (299)
T ss_pred ccceeeCCCCCceeeeeeccCcc
Confidence 39988 689999998874
No 16
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.02 E-value=3.8e-06 Score=81.63 Aligned_cols=115 Identities=26% Similarity=0.419 Sum_probs=73.2
Q ss_pred cccccccc--ccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 019627 94 RLCAKFKH--GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD 171 (338)
Q Consensus 94 ~lC~~f~~--G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~ 171 (338)
..|.++.. -.|.+|..|.+.|..... ..++.+|++| ..|.|..|+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~vcK~~-l~glC~kgD 92 (325)
T KOG1040|consen 46 ATCEFNESREKPCERGPICPKSHNDVSD--------------------------------SRGKVVCKHW-LRGLCKKGD 92 (325)
T ss_pred chhcccccCCCCccCCCCCccccCCccc--------------------------------cCCceeehhh-hhhhhhccC
Confidence 45887765 679999999999976531 2345799866 678999999
Q ss_pred CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccCCCCCCCcc
Q 019627 172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHF 251 (338)
Q Consensus 172 ~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~C~~G~~C~F 251 (338)
.|.|+|+. +.. +.++...+++. |...|.-+= +.- +.. ...+.++|+.|..|+|+.|+.|++
T Consensus 93 ~C~Flhe~-~~~-----k~rec~ff~~~--------g~c~~~~~c--~y~--h~d-pqt~~k~c~~~~~g~c~~g~~c~~ 153 (325)
T KOG1040|consen 93 QCEFLHEY-DLT-----KMRECKFFSLF--------GECTNGKDC--PYL--HGD-PQTAIKKCKWYKEGFCRGGPSCKK 153 (325)
T ss_pred cCcchhhh-hhc-----ccccccccccc--------cccccccCC--ccc--CCC-hhhhhhccchhhhccCCCcchhhh
Confidence 99999986 211 12333333221 112221000 000 001 134566899999999999999999
Q ss_pred CCCcccccc
Q 019627 252 AHGQSELQV 260 (338)
Q Consensus 252 aHg~~elr~ 260 (338)
.|....+-.
T Consensus 154 ~h~~~~~c~ 162 (325)
T KOG1040|consen 154 RHERKVLCP 162 (325)
T ss_pred hhhcccCCC
Confidence 998874433
No 17
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.96 E-value=4.8e-06 Score=51.15 Aligned_cols=26 Identities=46% Similarity=1.174 Sum_probs=23.4
Q ss_pred cccccCcccccccCCCCCCCccCCCc
Q 019627 230 WKTKLCIKWTQGQCPFGEKCHFAHGQ 255 (338)
Q Consensus 230 ~Kt~lC~~f~~G~C~~G~~C~FaHg~ 255 (338)
+|+.+|++|.+|.|.+|++|+|+|..
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence 46778999999999999999999963
No 18
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.92 E-value=7.2e-06 Score=78.76 Aligned_cols=63 Identities=21% Similarity=0.567 Sum_probs=47.8
Q ss_pred ccccccccccccccccCCCCCC-CCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627 88 NIFFKTRLCAKFKHGACRNGEN-CNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE 166 (338)
Q Consensus 88 ~~~~KT~lC~~f~~G~C~~G~~-C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~ 166 (338)
..+..-++|+.|+.|+|.+|+. |+|+|...... | .+.+...|..| .+|.
T Consensus 32 ~~wl~~eVCReF~rn~C~R~d~~CkfaHP~~~~~------------V-----------------~~g~v~aC~Ds-~kgr 81 (331)
T KOG2494|consen 32 TKWLTLEVCREFLRNTCSRGDRECKFAHPPKNCQ------------V-----------------SNGRVIACFDS-QKGR 81 (331)
T ss_pred cchhHHHHHHHHHhccccCCCccccccCCCCCCC------------c-----------------cCCeEEEEecc-ccCc
Confidence 3456778999999999999999 99999766321 1 12345689755 6789
Q ss_pred CCCCCCCCCCCCCCc
Q 019627 167 CPYGDRCNFLHEDPA 181 (338)
Q Consensus 167 C~~G~~C~F~H~~~e 181 (338)
|.+ ++|+|+|.-..
T Consensus 82 CsR-~nCkylHpp~h 95 (331)
T KOG2494|consen 82 CSR-ENCKYLHPPQH 95 (331)
T ss_pred cCc-ccceecCCChh
Confidence 996 77999998554
No 19
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.87 E-value=5.1e-06 Score=79.78 Aligned_cols=61 Identities=26% Similarity=0.660 Sum_probs=46.2
Q ss_pred ccccccccCCCCCCCCCC-CCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 019627 155 MKLCKKFYNGEECPYGDR-CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTK 233 (338)
Q Consensus 155 t~lCk~f~~~G~C~~G~~-C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~ 233 (338)
.++||.| ..+.|.+|++ |+|+|.... .. ...-+-.
T Consensus 37 ~eVCReF-~rn~C~R~d~~CkfaHP~~~-~~------------------------------------------V~~g~v~ 72 (331)
T KOG2494|consen 37 LEVCREF-LRNTCSRGDRECKFAHPPKN-CQ------------------------------------------VSNGRVI 72 (331)
T ss_pred HHHHHHH-HhccccCCCccccccCCCCC-CC------------------------------------------ccCCeEE
Confidence 4689988 5789999999 999998531 00 0011233
Q ss_pred cCcccccccCCCCCCCccCCCcccccc
Q 019627 234 LCIKWTQGQCPFGEKCHFAHGQSELQV 260 (338)
Q Consensus 234 lC~~f~~G~C~~G~~C~FaHg~~elr~ 260 (338)
.|.+|++|.|.+ ++|+|+|...+++.
T Consensus 73 aC~Ds~kgrCsR-~nCkylHpp~hlkd 98 (331)
T KOG2494|consen 73 ACFDSQKGRCSR-ENCKYLHPPQHLKD 98 (331)
T ss_pred EEeccccCccCc-ccceecCCChhhhh
Confidence 599999999999 88999999987665
No 20
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=3.8e-05 Score=76.88 Aligned_cols=87 Identities=24% Similarity=0.482 Sum_probs=64.9
Q ss_pred ccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCCC
Q 019627 94 RLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRC 173 (338)
Q Consensus 94 ~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~~C 173 (338)
..|-+|....|++++.|.|.|...-+.- ...|.+|...-.|.. .|
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~n---------------------------------~t~C~~w~~~~~C~k--~C 48 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALGN---------------------------------ETVCTLWQEGRCCRK--VC 48 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhcC---------------------------------cchhhhhhhcCcccc--cc
Confidence 3599999999999999999998765521 247998877766664 89
Q ss_pred CCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccccccc-CCCCCCCccC
Q 019627 174 NFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQ-CPFGEKCHFA 252 (338)
Q Consensus 174 ~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~-C~~G~~C~Fa 252 (338)
.|.|...... .....|.+|.+|. |.. ++|-|.
T Consensus 49 ~YRHSe~~~k----------------------------------------------r~e~~CYwe~~p~gC~k-~~CgfR 81 (667)
T KOG4791|consen 49 RYRHSEIDKK----------------------------------------------RSEIPCYWENQPTGCQK-LNCGFR 81 (667)
T ss_pred cchhhHHhhh----------------------------------------------cCcccceeecCCCccCC-Cccccc
Confidence 9999864321 1234698887777 998 999999
Q ss_pred CCccccccCC
Q 019627 253 HGQSELQVIG 262 (338)
Q Consensus 253 Hg~~elr~~~ 262 (338)
|...-|..-.
T Consensus 82 H~~pPLkg~l 91 (667)
T KOG4791|consen 82 HNRPPLKGVL 91 (667)
T ss_pred cCCCchhhhc
Confidence 9665555443
No 21
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.29 E-value=0.0001 Score=74.39 Aligned_cols=64 Identities=34% Similarity=0.831 Sum_probs=45.2
Q ss_pred cccccccccCC--CCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627 154 KMKLCKKFYNG--EECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (338)
Q Consensus 154 Kt~lCk~f~~~--G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K 231 (338)
+..+|.....+ ..|.||++|+|.|+....+.... + + .
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~---------------~-----------D---------i------ 113 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKA---------------P-----------D---------I------ 113 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccC---------------c-----------c---------c------
Confidence 35689877776 57999999999999754332110 0 0 0
Q ss_pred cccCccc-ccccCCCCCCCcc--CCCcccc
Q 019627 232 TKLCIKW-TQGQCPFGEKCHF--AHGQSEL 258 (338)
Q Consensus 232 t~lC~~f-~~G~C~~G~~C~F--aHg~~el 258 (338)
-.-|..| ..|.|++|-+|+| +|-+.+-
T Consensus 114 g~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g 143 (614)
T KOG2333|consen 114 GPSCPVFESLGFCPYGFKCRFLGAHLDIEG 143 (614)
T ss_pred CCccceeeccccCCccceeehhhcccCccc
Confidence 0239999 9999999999999 4555443
No 22
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.39 E-value=0.0011 Score=67.11 Aligned_cols=59 Identities=36% Similarity=0.780 Sum_probs=45.0
Q ss_pred ccccccccccc---cCCCCCCCCcccCCCCcCCC-CCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCC
Q 019627 92 KTRLCAKFKHG---ACRNGENCNFAHGMEDLRQP-PPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC 167 (338)
Q Consensus 92 KT~lC~~f~~G---~C~~G~~C~FaH~~~e~r~p-p~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C 167 (338)
+.+||.....| .|.+|++|+|.|+++..-.. ++ .-...|..|...|.|
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~----------------------------Dig~~Cp~f~s~G~C 126 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAP----------------------------DIGPSCPVFESLGFC 126 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCc----------------------------ccCCccceeeccccC
Confidence 56799998755 89999999999998754211 00 011369989889999
Q ss_pred CCCCCCCCCCC
Q 019627 168 PYGDRCNFLHE 178 (338)
Q Consensus 168 ~~G~~C~F~H~ 178 (338)
+||-.|+|+-.
T Consensus 127 p~G~~CRFl~a 137 (614)
T KOG2333|consen 127 PYGFKCRFLGA 137 (614)
T ss_pred Cccceeehhhc
Confidence 99999999754
No 23
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.37 E-value=0.0072 Score=57.90 Aligned_cols=54 Identities=28% Similarity=0.632 Sum_probs=41.6
Q ss_pred ccccccc-ccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccC--CCCCCC
Q 019627 93 TRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYN--GEECPY 169 (338)
Q Consensus 93 T~lC~~f-~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~--~G~C~~ 169 (338)
...|++| ..|.|..|..|.+.|....... ..|..|.. .+.|++
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~----------------------------------~~~~~~~~~~~~f~p~ 179 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFA----------------------------------GNCDQYSGATYGFCPL 179 (285)
T ss_pred CCCcccccccceeccCCCCCccccCccccc----------------------------------ccccccCcccccccCC
Confidence 6679999 5899999999999998722211 24554432 688999
Q ss_pred CCCCCCCCCCC
Q 019627 170 GDRCNFLHEDP 180 (338)
Q Consensus 170 G~~C~F~H~~~ 180 (338)
|..|++.|...
T Consensus 180 g~~c~~~H~~~ 190 (285)
T COG5084 180 GASCKFSHTLK 190 (285)
T ss_pred CCccccccccc
Confidence 99999999964
No 24
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.96 E-value=0.0029 Score=62.68 Aligned_cols=36 Identities=36% Similarity=0.757 Sum_probs=29.2
Q ss_pred CCccccccCcccccccCCCCCCCccCCCcc----ccccCC
Q 019627 227 PVYWKTKLCIKWTQGQCPFGEKCHFAHGQS----ELQVIG 262 (338)
Q Consensus 227 ~~~~Kt~lC~~f~~G~C~~G~~C~FaHg~~----elr~~~ 262 (338)
|....+.+|+||..|.|+||++|+|.||.. +||++.
T Consensus 135 PTh~sMkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~yq 174 (486)
T KOG2185|consen 135 PTHESMKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNYQ 174 (486)
T ss_pred CcchhhccchHhhccccccCcccccccCcccchhhcccCC
Confidence 345567789999999999999999999984 466553
No 25
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.93 E-value=0.0044 Score=35.35 Aligned_cols=19 Identities=42% Similarity=0.915 Sum_probs=16.4
Q ss_pred cccccccccCCCCCCCCcccC
Q 019627 95 LCAKFKHGACRNGENCNFAHG 115 (338)
Q Consensus 95 lC~~f~~G~C~~G~~C~FaH~ 115 (338)
+|++|.. |++|++|.|+|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4887766 999999999994
No 26
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.0074 Score=60.92 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=62.7
Q ss_pred ccccccccc-cCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCC
Q 019627 94 RLCAKFKHG-ACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDR 172 (338)
Q Consensus 94 ~lC~~f~~G-~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~~ 172 (338)
..|.+|+.+ .|+. .|.|.|..-.+.+ ..+.|-++.+...|. .++
T Consensus 33 t~C~~w~~~~~C~k--~C~YRHSe~~~kr--------------------------------~e~~CYwe~~p~gC~-k~~ 77 (667)
T KOG4791|consen 33 TVCTLWQEGRCCRK--VCRYRHSEIDKKR--------------------------------SEIPCYWENQPTGCQ-KLN 77 (667)
T ss_pred chhhhhhhcCcccc--cccchhhHHhhhc--------------------------------CcccceeecCCCccC-CCc
Confidence 469999976 5555 9999998765432 125786554444598 599
Q ss_pred CCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccCCCCCCCccC
Q 019627 173 CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFA 252 (338)
Q Consensus 173 C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~C~~G~~C~Fa 252 (338)
|-|.|..+. +...-.....+.. .+.+.+.-.+........-..|-+|.+|+|.-||.|-|+
T Consensus 78 CgfRH~~pP-Lkg~l~~~p~~pe------------------~ev~~~~~SAq~~sV~~~p~P~l~~~K~~e~~~D~~s~L 138 (667)
T KOG4791|consen 78 CGFRHNRPP-LKGVLPTVPESPE------------------EEVKASQLSAQQNSVQSNPSPQLRSVKKVESSEDVPSPL 138 (667)
T ss_pred cccccCCCc-hhhhccCCCCCcc------------------cccccccccCCCcccccCCchHHHHhhhhhhhccccccC
Confidence 999997643 1111000001100 011111101111111222345888899999999999999
Q ss_pred CCcc
Q 019627 253 HGQS 256 (338)
Q Consensus 253 Hg~~ 256 (338)
|...
T Consensus 139 h~P~ 142 (667)
T KOG4791|consen 139 HPPV 142 (667)
T ss_pred CCCc
Confidence 9873
No 27
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.72 E-value=0.004 Score=61.71 Aligned_cols=25 Identities=48% Similarity=1.119 Sum_probs=22.9
Q ss_pred cccccccccccCCCCCCCCcccCCC
Q 019627 93 TRLCAKFKHGACRNGENCNFAHGME 117 (338)
Q Consensus 93 T~lC~~f~~G~C~~G~~C~FaH~~~ 117 (338)
-.+|.||+.|.|+++++|+|+|+..
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hccchHhhccccccCcccccccCcc
Confidence 3589999999999999999999876
No 28
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.55 E-value=0.0087 Score=34.13 Aligned_cols=19 Identities=32% Similarity=0.738 Sum_probs=15.9
Q ss_pred cCcccccccCCCCCCCccCCC
Q 019627 234 LCIKWTQGQCPFGEKCHFAHG 254 (338)
Q Consensus 234 lC~~f~~G~C~~G~~C~FaHg 254 (338)
+|++|.. |.+|++|.|+|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4887733 999999999995
No 29
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=95.02 E-value=0.0062 Score=56.47 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=24.4
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCcc
Q 019627 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAK 182 (338)
Q Consensus 152 ~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~ 182 (338)
..|+.+|-.| ..+.|..|+.|.|+|+..+.
T Consensus 82 dpK~~vcalF-~~~~c~kg~~ckF~h~~ee~ 111 (299)
T COG5252 82 DPKTVVCALF-LNKTCAKGDACKFAHGKEEA 111 (299)
T ss_pred CchhHHHHHh-ccCccccCchhhhhcchHHH
Confidence 4578899866 56799999999999996543
No 30
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.77 E-value=0.011 Score=53.66 Aligned_cols=31 Identities=26% Similarity=0.833 Sum_probs=25.8
Q ss_pred cccccCccc-ccccCCCCCCCccCCCcccccc
Q 019627 230 WKTKLCIKW-TQGQCPFGEKCHFAHGQSELQV 260 (338)
Q Consensus 230 ~Kt~lC~~f-~~G~C~~G~~C~FaHg~~elr~ 260 (338)
+...+|++| .+|+|-||+.|.|.|...++..
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~Kt 170 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDFKT 170 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhhhhhhhc
Confidence 344579999 9999999999999998875543
No 31
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.72 E-value=0.028 Score=51.02 Aligned_cols=32 Identities=31% Similarity=0.789 Sum_probs=27.3
Q ss_pred cccccccccccc-cccCCCCCCCCcccCCCCcC
Q 019627 89 IFFKTRLCAKFK-HGACRNGENCNFAHGMEDLR 120 (338)
Q Consensus 89 ~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~r 120 (338)
+-|.-.+|+.|. +|.|-||+.|+|.|..++..
T Consensus 137 iD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~K 169 (259)
T COG5152 137 IDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFK 169 (259)
T ss_pred eecCcccccchhhcccccCCchhhhhhhhhhhh
Confidence 446677999997 99999999999999887654
No 32
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=0.085 Score=50.58 Aligned_cols=29 Identities=28% Similarity=0.949 Sum_probs=25.2
Q ss_pred cccccCccc-ccccCCCCCCCccCCCcccc
Q 019627 230 WKTKLCIKW-TQGQCPFGEKCHFAHGQSEL 258 (338)
Q Consensus 230 ~Kt~lC~~f-~~G~C~~G~~C~FaHg~~el 258 (338)
+...+|+.| .+|+|-||+.|.|+|....+
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 445689999 99999999999999988755
No 33
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=90.07 E-value=0.075 Score=50.88 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=28.9
Q ss_pred ccccccCcccccccCCCCCCCccCCCccccccC
Q 019627 229 YWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVI 261 (338)
Q Consensus 229 ~~Kt~lC~~f~~G~C~~G~~C~FaHg~~elr~~ 261 (338)
-.|+.+|-+|..|.|..|+.|.|+|+....+..
T Consensus 89 DPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~ 121 (343)
T KOG1763|consen 89 DPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKK 121 (343)
T ss_pred CchHHHHHHHhccCCCCCCcccccchHHHhhhc
Confidence 457889999999999999999999999876654
No 34
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.27 E-value=0.17 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.917 Sum_probs=23.2
Q ss_pred ccccccccccCCCCCCCCcccCCC
Q 019627 94 RLCAKFKHGACRNGENCNFAHGME 117 (338)
Q Consensus 94 ~lC~~f~~G~C~~G~~C~FaH~~~ 117 (338)
.||++|+.|.|++|+.|+|.|...
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcccccccccceeeeeccCc
Confidence 799999999999999999999987
No 35
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=87.39 E-value=1.2 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=15.9
Q ss_pred cccCcccccccCCCCCCCccCCCcc
Q 019627 232 TKLCIKWTQGQCPFGEKCHFAHGQS 256 (338)
Q Consensus 232 t~lC~~f~~G~C~~G~~C~FaHg~~ 256 (338)
+.+|+|+ |.|.+ -.|+|.|...
T Consensus 625 ~~~CrY~--pnCrn-m~C~F~HPk~ 646 (681)
T KOG3702|consen 625 RGLCRYR--PNCRN-MQCKFYHPKT 646 (681)
T ss_pred cccceec--cCcCC-ccccccCCcc
Confidence 4568887 77777 7788888664
No 36
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=0.2 Score=48.11 Aligned_cols=32 Identities=31% Similarity=0.830 Sum_probs=27.6
Q ss_pred ccccccccccccc-cccCCCCCCCCcccCCCCc
Q 019627 88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMEDL 119 (338)
Q Consensus 88 ~~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~ 119 (338)
-+=|--.+|+.|. +|.|.||+.|+|.|...+.
T Consensus 181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred eeecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 3446778999998 9999999999999988765
No 37
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=0.25 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.952 Sum_probs=23.0
Q ss_pred ccCcccccccCCCCCCCccCCCcc
Q 019627 233 KLCIKWTQGQCPFGEKCHFAHGQS 256 (338)
Q Consensus 233 ~lC~~f~~G~C~~G~~C~FaHg~~ 256 (338)
.+|+||..|+|.+|+.|+|.|...
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcccccccccceeeeeccCc
Confidence 789999999999999999999987
No 38
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=82.81 E-value=0.72 Score=27.64 Aligned_cols=21 Identities=33% Similarity=0.776 Sum_probs=17.4
Q ss_pred ccccccccc-cCCCCCCCCcccC
Q 019627 94 RLCAKFKHG-ACRNGENCNFAHG 115 (338)
Q Consensus 94 ~lC~~f~~G-~C~~G~~C~FaH~ 115 (338)
.+|.+..+| .|.. +.|.|.|.
T Consensus 1 ~lC~yEl~Gg~Cnd-~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCND-PDCEFQHF 22 (23)
T ss_pred CCCccccCCCeeCC-CCCCcccc
Confidence 379999987 9966 79999994
No 39
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=81.89 E-value=0.84 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=16.7
Q ss_pred cCcccccc-cCCCCCCCccCCC
Q 019627 234 LCIKWTQG-QCPFGEKCHFAHG 254 (338)
Q Consensus 234 lC~~f~~G-~C~~G~~C~FaHg 254 (338)
+|.|..+| .|.. +.|.|.|-
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQHF 22 (23)
T ss_pred CCccccCCCeeCC-CCCCcccc
Confidence 69988666 9988 89999993
No 40
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=77.66 E-value=0.97 Score=42.67 Aligned_cols=27 Identities=33% Similarity=0.845 Sum_probs=24.4
Q ss_pred ccccccccccccccCCCCCCCCcccCC
Q 019627 90 FFKTRLCAKFKHGACRNGENCNFAHGM 116 (338)
Q Consensus 90 ~~KT~lC~~f~~G~C~~G~~C~FaH~~ 116 (338)
-|+..+|..|..+.|.+|..|+|.|.-
T Consensus 149 ~~rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 149 DFREAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred chhhhhhcccccccCCCCCcCcchhhh
Confidence 368889999998899999999999965
No 41
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=72.28 E-value=0.8 Score=31.46 Aligned_cols=9 Identities=67% Similarity=1.531 Sum_probs=7.6
Q ss_pred ccccccccc
Q 019627 317 RIYADWLDD 325 (338)
Q Consensus 317 ~iy~dw~d~ 325 (338)
=+|+||+|+
T Consensus 20 LvYADWL~e 28 (42)
T TIGR02996 20 LVYADWLDE 28 (42)
T ss_pred HHHHHHHHH
Confidence 389999986
No 42
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.68 E-value=1.9 Score=42.45 Aligned_cols=24 Identities=25% Similarity=0.843 Sum_probs=22.0
Q ss_pred ccCcccccccCCCCCCCccCCCcc
Q 019627 233 KLCIKWTQGQCPFGEKCHFAHGQS 256 (338)
Q Consensus 233 ~lC~~f~~G~C~~G~~C~FaHg~~ 256 (338)
-+|.+|..|.|.+|+.|.|.|...
T Consensus 162 ~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 162 HICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred ccccceeeccccccccccccccCC
Confidence 489999999999999999999775
No 43
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=60.00 E-value=4 Score=38.63 Aligned_cols=28 Identities=21% Similarity=0.681 Sum_probs=25.2
Q ss_pred CccccccCcccccccCCCCCCCccCCCc
Q 019627 228 VYWKTKLCIKWTQGQCPFGEKCHFAHGQ 255 (338)
Q Consensus 228 ~~~Kt~lC~~f~~G~C~~G~~C~FaHg~ 255 (338)
..++..+|..|..+.|.+|..|-|.|..
T Consensus 148 T~~rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 148 TDFREAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred CchhhhhhcccccccCCCCCcCcchhhh
Confidence 4688899999977799999999999976
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=59.23 E-value=4.4 Score=39.96 Aligned_cols=25 Identities=28% Similarity=0.875 Sum_probs=22.8
Q ss_pred cccccccccccCCCCCCCCcccCCC
Q 019627 93 TRLCAKFKHGACRNGENCNFAHGME 117 (338)
Q Consensus 93 T~lC~~f~~G~C~~G~~C~FaH~~~ 117 (338)
--||.+|..|.|++|+.|.|.|...
T Consensus 161 p~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 161 PHICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred CccccceeeccccccccccccccCC
Confidence 3589999999999999999999876
No 45
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=41.39 E-value=6.1 Score=30.92 Aligned_cols=11 Identities=27% Similarity=0.972 Sum_probs=7.6
Q ss_pred ccccccccccc
Q 019627 316 NRIYADWLDDM 326 (338)
Q Consensus 316 ~~iy~dw~d~~ 326 (338)
--||.||||..
T Consensus 67 iDVY~~wiD~~ 77 (81)
T PF05129_consen 67 IDVYSEWIDAC 77 (81)
T ss_dssp THHHHHHHHHH
T ss_pred cchhHHHHHHH
Confidence 34788888853
No 46
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=39.17 E-value=7.3 Score=31.78 Aligned_cols=15 Identities=33% Similarity=0.895 Sum_probs=10.9
Q ss_pred cccccccccccccCC
Q 019627 317 RIYADWLDDMPLAHN 331 (338)
Q Consensus 317 ~iy~dw~d~~~~~~~ 331 (338)
-||-||||.---|.+
T Consensus 69 DVYSdWiDaCe~vn~ 83 (109)
T KOG3214|consen 69 DVYSDWIDACEAVNN 83 (109)
T ss_pred HHHHHHHHHHHHhhc
Confidence 489999997655544
No 47
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=37.65 E-value=46 Score=34.34 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.7
Q ss_pred cccccccccccccc-cccCCCCCCCCcccCCCCc
Q 019627 87 TNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDL 119 (338)
Q Consensus 87 ~~~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~ 119 (338)
...++-...|.+|. +|.|.+|+.|.+.|+...+
T Consensus 206 ~ks~~s~~r~k~fee~g~~~r~el~p~~hg~~~v 239 (526)
T KOG2135|consen 206 EKSRNSENRRKFFEEFGVLERGELCPTHHGCVPV 239 (526)
T ss_pred ccccccHHhhhhhHhhceeeecccccccccccee
Confidence 33455666899997 8999999999999987644
No 48
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=32.33 E-value=9.4 Score=31.10 Aligned_cols=10 Identities=20% Similarity=0.590 Sum_probs=7.5
Q ss_pred cccccccccc
Q 019627 317 RIYADWLDDM 326 (338)
Q Consensus 317 ~iy~dw~d~~ 326 (338)
-||.+|||..
T Consensus 64 DVY~~wiD~~ 73 (99)
T PRK14892 64 DVYNKFIDLY 73 (99)
T ss_pred hhHHHHHHHH
Confidence 4788888864
No 49
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=29.31 E-value=1.1e+02 Score=32.94 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=16.6
Q ss_pred ccccccccccCCCCCCCCcccCCCC
Q 019627 94 RLCAKFKHGACRNGENCNFAHGMED 118 (338)
Q Consensus 94 ~lC~~f~~G~C~~G~~C~FaH~~~e 118 (338)
..|.++.+ |. +..|.|+|....
T Consensus 545 ~~Cky~~~--Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 545 TRCKYGPA--CT-SAECEFAHPTAA 566 (681)
T ss_pred ccccCCCc--CC-chhhhhcCCcch
Confidence 35777776 66 789999997654
No 50
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=28.47 E-value=29 Score=21.22 Aligned_cols=15 Identities=40% Similarity=1.183 Sum_probs=7.2
Q ss_pred cCcccccccCCCCCCCc
Q 019627 234 LCIKWTQGQCPFGEKCH 250 (338)
Q Consensus 234 lC~~f~~G~C~~G~~C~ 250 (338)
+|+++ |.|+.|..|+
T Consensus 8 mc~~~--~gC~WGQ~~~ 22 (27)
T PF08098_consen 8 MCKYT--GGCPWGQNCY 22 (27)
T ss_dssp ---TT--TT-SSS-SS-
T ss_pred cceee--cCCccccccc
Confidence 45554 7799999986
Done!