Query 019627
Match_columns 338
No_of_seqs 213 out of 1578
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.6 3E-16 1E-20 120.2 3.1 69 88-181 7-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.5 1.8E-14 6.2E-19 110.2 3.4 68 151-257 8-76 (77)
3 2d9n_A Cleavage and polyadenyl 99.4 1E-13 3.4E-18 106.6 5.0 56 90-180 7-62 (77)
4 2rhk_C Cleavage and polyadenyl 99.2 5.5E-12 1.9E-16 95.7 2.2 60 87-181 10-69 (72)
5 2cqe_A KIAA1064 protein; CCCH 99.2 1.3E-11 4.5E-16 99.0 3.6 51 91-180 11-61 (98)
6 3d2q_A Muscleblind-like protei 99.0 2.3E-10 7.7E-15 86.2 3.4 60 92-180 5-65 (70)
7 2cqe_A KIAA1064 protein; CCCH 98.9 5.8E-10 2E-14 89.4 4.7 52 152-257 10-62 (98)
8 2d9n_A Cleavage and polyadenyl 98.9 4.1E-10 1.4E-14 86.3 3.4 58 152-259 7-65 (77)
9 3d2q_A Muscleblind-like protei 98.9 4.2E-10 1.4E-14 84.7 2.5 64 154-260 5-69 (70)
10 2e5s_A Otthump00000018578; ZF- 98.8 5.7E-10 2E-14 89.4 0.6 61 92-181 19-80 (98)
11 2rhk_C Cleavage and polyadenyl 98.8 1.2E-09 4.1E-14 82.7 2.0 57 152-258 13-70 (72)
12 2e5s_A Otthump00000018578; ZF- 98.7 2.4E-09 8.1E-14 85.8 1.2 67 152-261 17-84 (98)
13 3d2n_A Muscleblind-like protei 98.7 6.7E-09 2.3E-13 80.7 3.4 62 88-180 4-66 (83)
14 2d9m_A Zinc finger CCCH-type d 98.6 8.4E-09 2.9E-13 76.9 0.8 35 229-263 17-51 (69)
15 3d2n_A Muscleblind-like protei 98.5 3E-08 1E-12 77.0 2.9 63 153-260 7-70 (83)
16 2rpp_A Muscleblind-like protei 98.5 4.9E-08 1.7E-12 76.7 2.9 62 88-180 12-74 (89)
17 2d9m_A Zinc finger CCCH-type d 98.4 1.7E-08 5.9E-13 75.2 -0.9 30 92-121 19-48 (69)
18 2rpp_A Muscleblind-like protei 98.3 2E-07 6.9E-12 73.2 2.0 62 154-260 16-78 (89)
19 3u9g_A Zinc finger CCCH-type a 98.0 3.5E-06 1.2E-10 76.3 3.8 95 94-257 90-199 (229)
20 2fc6_A Nuclear, target of EGR1 96.1 0.0015 5E-08 45.2 1.1 27 91-117 18-45 (50)
21 2fc6_A Nuclear, target of EGR1 95.9 0.002 6.9E-08 44.5 0.8 28 153-180 18-45 (50)
22 2lhn_A Nuclear polyadenylated 94.3 0.0028 9.7E-08 48.5 0.0 21 93-116 9-29 (80)
23 3u1l_A PRE-mRNA-splicing facto 93.2 0.017 6E-07 52.8 0.3 25 233-257 71-95 (240)
24 3u9g_A Zinc finger CCCH-type a 92.9 0.073 2.5E-06 48.1 3.9 47 91-181 149-199 (229)
25 3u1l_A PRE-mRNA-splicing facto 91.9 0.037 1.3E-06 50.6 0.6 25 93-117 70-94 (240)
26 3v33_A Ribonuclease ZC3H12A; r 46.8 4.1 0.00014 36.7 0.0 24 92-117 191-214 (223)
27 1wii_A Hypothetical UPF0222 pr 46.4 2.9 9.9E-05 32.0 -0.9 12 316-327 68-79 (85)
28 3v33_A Ribonuclease ZC3H12A; r 40.9 5.7 0.0002 35.7 0.0 24 231-256 191-214 (223)
29 2kqb_A Aprataxin and PNK-like 26.8 36 0.0012 26.1 2.4 10 241-250 57-66 (89)
30 2kuo_A Aprataxin and PNK-like 20.6 26 0.0009 27.0 0.5 10 241-250 62-71 (91)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.59 E-value=3e-16 Score=120.17 Aligned_cols=69 Identities=42% Similarity=0.912 Sum_probs=31.2
Q ss_pred ccccccccccccc-cccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627 88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE 166 (338)
Q Consensus 88 ~~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~ 166 (338)
+..|||++|++|+ +|.|++|++|+|+|+..+++.... +..+++.+|++|...|.
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~-------------------------~~~~k~~~C~~f~~~G~ 61 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR-------------------------HPKYKTELCHKFKLQGR 61 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-------------------------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc-------------------------cccccCCcccchhhCcC
Confidence 3568999999996 899999999999999998875321 12578899998988999
Q ss_pred CCCCCCCCCCCCCCc
Q 019627 167 CPYGDRCNFLHEDPA 181 (338)
Q Consensus 167 C~~G~~C~F~H~~~e 181 (338)
|++|++|+|+|...+
T Consensus 62 C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 62 CPYGSRCHFIHNPTE 76 (77)
T ss_dssp ---------------
T ss_pred CCCcCcCCCCCCCCC
Confidence 999999999998654
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.46 E-value=1.8e-14 Score=110.18 Aligned_cols=68 Identities=35% Similarity=0.811 Sum_probs=28.3
Q ss_pred hcccccccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 019627 151 IIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYW 230 (338)
Q Consensus 151 ~~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~ 230 (338)
..+|+++|++|...|.|.+|++|+|+|+..+.... .....+
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~---------------------------------------~~~~~~ 48 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA---------------------------------------NRHPKY 48 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT---------------------------------------C-----
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccc---------------------------------------cccccc
Confidence 36899999988888999999999999997542110 001257
Q ss_pred ccccCccc-ccccCCCCCCCccCCCccc
Q 019627 231 KTKLCIKW-TQGQCPFGEKCHFAHGQSE 257 (338)
Q Consensus 231 Kt~lC~~f-~~G~C~~G~~C~FaHg~~e 257 (338)
++.+|++| .+|.|++|++|+|+|+..|
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ----------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 88999988 8999999999999999875
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=106.58 Aligned_cols=56 Identities=34% Similarity=0.737 Sum_probs=48.2
Q ss_pred ccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 019627 90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY 169 (338)
Q Consensus 90 ~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~ 169 (338)
.+|+++|++|+.|.|++|++|.|+|++...+ +.+|++|...|.|.
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~----------------------------------~~~C~~f~~~G~C~- 51 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMTK----------------------------------MPECYFYSKFGECS- 51 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSCCTTT----------------------------------SCBCHHHHHTCCCC-
T ss_pred CCcceeCHhHccCcCCCCCCCCCccccccCc----------------------------------CCCCcccCCCCccC-
Confidence 3589999999999999999999999877432 34899887769999
Q ss_pred CCCCCCCCCCC
Q 019627 170 GDRCNFLHEDP 180 (338)
Q Consensus 170 G~~C~F~H~~~ 180 (338)
|++|+|+|..+
T Consensus 52 ~~~C~f~H~~~ 62 (77)
T 2d9n_A 52 NKECPFLHIDP 62 (77)
T ss_dssp CSSCSSBCCCT
T ss_pred CCCeeccCCCc
Confidence 89999999964
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.18 E-value=5.5e-12 Score=95.67 Aligned_cols=60 Identities=33% Similarity=0.661 Sum_probs=49.7
Q ss_pred cccccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627 87 TNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE 166 (338)
Q Consensus 87 ~~~~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~ 166 (338)
.....|+++|++|+.|.|++|++|.|+|+.... ++.+|++|...|.
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~----------------------------------~~~~C~~f~~~G~ 55 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT----------------------------------KMSECYFYSKFGE 55 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTT----------------------------------SCCBCHHHHHHSC
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCccccccc----------------------------------cCCcccccCCCCC
Confidence 334568999999999999999999999987543 2358997766599
Q ss_pred CCCCCCCCCCCCCCc
Q 019627 167 CPYGDRCNFLHEDPA 181 (338)
Q Consensus 167 C~~G~~C~F~H~~~e 181 (338)
|.+ ++|+|+|..+.
T Consensus 56 C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 56 CSN-KECPFLHIDPE 69 (72)
T ss_dssp CSB-TTCCSBCCCCC
T ss_pred CCC-CCeeccCCCcc
Confidence 999 99999999764
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.16 E-value=1.3e-11 Score=99.01 Aligned_cols=51 Identities=35% Similarity=0.747 Sum_probs=45.9
Q ss_pred cccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 019627 91 FKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG 170 (338)
Q Consensus 91 ~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G 170 (338)
+|+++|++|++|.|++|++|+|+|+ . .+|++|...|.|++|
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~-----~----------------------------------~~C~~f~~~G~C~~G 51 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHG-----D----------------------------------FPCKLYHTTGNCING 51 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSS-----S----------------------------------SBCSHHHHTSCCSSC
T ss_pred CCCccCcccccCcCCCCCCCCCCCC-----C----------------------------------CcCcCcccCCcCCCC
Confidence 5899999999999999999999998 1 279988778999999
Q ss_pred CCCCCCCCCC
Q 019627 171 DRCNFLHEDP 180 (338)
Q Consensus 171 ~~C~F~H~~~ 180 (338)
++|+|+|...
T Consensus 52 ~~C~f~H~~~ 61 (98)
T 2cqe_A 52 DDCMFSHDPL 61 (98)
T ss_dssp TTCSSBCCCC
T ss_pred CCCcccCCCC
Confidence 9999999854
No 6
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.97 E-value=2.3e-10 Score=86.18 Aligned_cols=60 Identities=22% Similarity=0.692 Sum_probs=48.0
Q ss_pred ccccccccccccCCCCC-CCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 019627 92 KTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG 170 (338)
Q Consensus 92 KT~lC~~f~~G~C~~G~-~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G 170 (338)
|.++|++|++|.|.+|+ .|+|+|...+....+ ...++.+|++|. .|.|.+|
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~---------------------------~~~~~~vC~~fl-kG~C~r~ 56 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDT---------------------------NDNTVTVCMDYI-KGRCSRE 56 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBT---------------------------TTTEEEBCHHHH-TTCCCCT
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccc---------------------------cCCcceeccccC-cCCCCCC
Confidence 77899999999999999 599999987653210 134678999775 5899999
Q ss_pred CCCCCCCCCC
Q 019627 171 DRCNFLHEDP 180 (338)
Q Consensus 171 ~~C~F~H~~~ 180 (338)
.|+|+|..+
T Consensus 57 -~C~y~H~~~ 65 (70)
T 3d2q_A 57 -KCKYFHPPA 65 (70)
T ss_dssp -TCCSBCCCH
T ss_pred -CcCeeCCHH
Confidence 999999853
No 7
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.94 E-value=5.8e-10 Score=89.36 Aligned_cols=52 Identities=31% Similarity=0.691 Sum_probs=44.8
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (338)
Q Consensus 152 ~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K 231 (338)
.+|+.+|++| ..|.|.+|++|+|+|+.
T Consensus 10 ~~k~~lC~~f-~~G~C~~G~~C~f~H~~---------------------------------------------------- 36 (98)
T 2cqe_A 10 PKKRELCKFY-ITGFCARAENCPYMHGD---------------------------------------------------- 36 (98)
T ss_dssp SCCCSBCTTT-TTTCCSCSTTCSSBSSS----------------------------------------------------
T ss_pred CCCCccCccc-ccCcCCCCCCCCCCCCC----------------------------------------------------
Confidence 4678899977 68999999999999981
Q ss_pred cccCccc-ccccCCCCCCCccCCCccc
Q 019627 232 TKLCIKW-TQGQCPFGEKCHFAHGQSE 257 (338)
Q Consensus 232 t~lC~~f-~~G~C~~G~~C~FaHg~~e 257 (338)
.+|++| .+|.|++|++|+|+|....
T Consensus 37 -~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 37 -FPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp -SBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred -CcCcCcccCCcCCCCCCCcccCCCCc
Confidence 149999 7999999999999999653
No 8
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.1e-10 Score=86.26 Aligned_cols=58 Identities=33% Similarity=0.689 Sum_probs=46.6
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (338)
Q Consensus 152 ~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K 231 (338)
.+|+.+|++|.. |.|.+|+.|.|+|+... .+
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~------------------------------------------------~~ 37 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDM------------------------------------------------TK 37 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCT------------------------------------------------TT
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCcccccc------------------------------------------------Cc
Confidence 457889997765 99999999999998531 13
Q ss_pred cccCccccc-ccCCCCCCCccCCCccccc
Q 019627 232 TKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259 (338)
Q Consensus 232 t~lC~~f~~-G~C~~G~~C~FaHg~~elr 259 (338)
+.+|++|++ |.|. |++|+|+|...+..
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred CCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 457999966 9999 89999999986543
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.90 E-value=4.2e-10 Score=84.70 Aligned_cols=64 Identities=22% Similarity=0.702 Sum_probs=50.2
Q ss_pred cccccccccCCCCCCCCC-CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 019627 154 KMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT 232 (338)
Q Consensus 154 Kt~lCk~f~~~G~C~~G~-~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt 232 (338)
|..+|++| ..|.|.+|+ .|+|+|...+.. ......++
T Consensus 5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~-----------------------------------------~~~~~~~~ 42 (70)
T 3d2q_A 5 RLEVCREY-QRGNCNRGENDCRFAHPADSTM-----------------------------------------IDTNDNTV 42 (70)
T ss_dssp EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSC-----------------------------------------CBTTTTEE
T ss_pred cchhCHHH-hcCCCCCCCCCCCCccCccccc-----------------------------------------ccccCCcc
Confidence 56799988 679999999 599999864310 01123467
Q ss_pred ccCcccccccCCCCCCCccCCCcccccc
Q 019627 233 KLCIKWTQGQCPFGEKCHFAHGQSELQV 260 (338)
Q Consensus 233 ~lC~~f~~G~C~~G~~C~FaHg~~elr~ 260 (338)
.+|.+|++|.|.+| +|+|+|...+|+.
T Consensus 43 ~vC~~flkG~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 43 TVCMDYIKGRCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp EBCHHHHTTCCCCT-TCCSBCCCHHHHC
T ss_pred eeccccCcCCCCCC-CcCeeCCHHHHhc
Confidence 88999989999999 9999999988764
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=5.7e-10 Score=89.40 Aligned_cols=61 Identities=25% Similarity=0.663 Sum_probs=49.0
Q ss_pred ccccccccccccCCCCC-CCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 019627 92 KTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG 170 (338)
Q Consensus 92 KT~lC~~f~~G~C~~G~-~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G 170 (338)
|.++|++|+.|.|.+|+ .|+|+|...+....+ ...++.+|.+| ..|.|.++
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~---------------------------~~~~~~vC~~f-lkG~C~r~ 70 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDT---------------------------SDNTVTVCMDY-IKGRCMRE 70 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCT---------------------------TTCEEEBCHHH-HHTCCCCT
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhccccc---------------------------cCCccccchhh-ccCCCCCC
Confidence 78999999999999999 899999987653211 02456799866 55899998
Q ss_pred CCCCCCCCCCc
Q 019627 171 DRCNFLHEDPA 181 (338)
Q Consensus 171 ~~C~F~H~~~e 181 (338)
.|+|.|....
T Consensus 71 -~C~y~H~~~~ 80 (98)
T 2e5s_A 71 -KCKYFHPPAH 80 (98)
T ss_dssp -TCCSBCCCHH
T ss_pred -CcCccCChHH
Confidence 9999998653
No 11
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=82.70 Aligned_cols=57 Identities=33% Similarity=0.676 Sum_probs=45.4
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (338)
Q Consensus 152 ~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K 231 (338)
..++.+|++|.. |.|.+|+.|.|+|+... .+
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~------------------------------------------------~~ 43 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDM------------------------------------------------TK 43 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCT------------------------------------------------TS
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCcccccc------------------------------------------------cc
Confidence 346789997755 99999999999998421 13
Q ss_pred cccCccccc-ccCCCCCCCccCCCcccc
Q 019627 232 TKLCIKWTQ-GQCPFGEKCHFAHGQSEL 258 (338)
Q Consensus 232 t~lC~~f~~-G~C~~G~~C~FaHg~~el 258 (338)
+.+|++|++ |.|.+ ++|+|.|...+.
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCcccccCCCCCCCC-CCeeccCCCccc
Confidence 457999976 99999 999999987654
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=2.4e-09 Score=85.81 Aligned_cols=67 Identities=24% Similarity=0.636 Sum_probs=51.6
Q ss_pred cccccccccccCCCCCCCCC-CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 019627 152 IHKMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYW 230 (338)
Q Consensus 152 ~~Kt~lCk~f~~~G~C~~G~-~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~ 230 (338)
..|..+|++|.. |.|.+|+ .|+|+|....... .....
T Consensus 17 ~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-----------------------------------------~~~~~ 54 (98)
T 2e5s_A 17 TDKLEVCREFQR-GNCARGETDCRFAHPADSTMI-----------------------------------------DTSDN 54 (98)
T ss_dssp SSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-----------------------------------------CTTTC
T ss_pred hhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-----------------------------------------cccCC
Confidence 346789998865 8999999 7999999643110 01134
Q ss_pred ccccCcccccccCCCCCCCccCCCccccccC
Q 019627 231 KTKLCIKWTQGQCPFGEKCHFAHGQSELQVI 261 (338)
Q Consensus 231 Kt~lC~~f~~G~C~~G~~C~FaHg~~elr~~ 261 (338)
++.+|.+|++|.|.+| +|+|.|...+|...
T Consensus 55 ~~~vC~~flkG~C~r~-~C~y~H~~~~l~~~ 84 (98)
T 2e5s_A 55 TVTVCMDYIKGRCMRE-KCKYFHPPAHLQAK 84 (98)
T ss_dssp EEEBCHHHHHTCCCCT-TCCSBCCCHHHHHH
T ss_pred ccccchhhccCCCCCC-CcCccCChHHHHHH
Confidence 6778999999999998 99999999877653
No 13
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.70 E-value=6.7e-09 Score=80.70 Aligned_cols=62 Identities=23% Similarity=0.596 Sum_probs=49.2
Q ss_pred ccccccccccccccccCCCCC-CCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627 88 NIFFKTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE 166 (338)
Q Consensus 88 ~~~~KT~lC~~f~~G~C~~G~-~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~ 166 (338)
..|.|.++|++|+.|.|.+|+ .|+|+|....+.. ...++..|..| ..|.
T Consensus 4 ~~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~-----------------------------~~~~~~vC~df-lkG~ 53 (83)
T 3d2n_A 4 TKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQV-----------------------------ENGRVIACFDS-LKGR 53 (83)
T ss_dssp CGGGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE-----------------------------ETTEEECCHHH-HTTC
T ss_pred cccccchhcHHHhcCCCCCCCCCCCCcCCCccccc-----------------------------cCCceeehhHh-hhcc
Confidence 457789999999999999997 9999998764311 01245689877 5689
Q ss_pred CCCCCCCCCCCCCC
Q 019627 167 CPYGDRCNFLHEDP 180 (338)
Q Consensus 167 C~~G~~C~F~H~~~ 180 (338)
|.++ .|+|.|...
T Consensus 54 C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 54 CSRE-NCKYLHPPP 66 (83)
T ss_dssp CCCS-SCSSCCCCH
T ss_pred ccCC-CcceeCChH
Confidence 9998 999999854
No 14
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=8.4e-09 Score=76.87 Aligned_cols=35 Identities=34% Similarity=0.725 Sum_probs=30.9
Q ss_pred ccccccCcccccccCCCCCCCccCCCccccccCCC
Q 019627 229 YWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIGG 263 (338)
Q Consensus 229 ~~Kt~lC~~f~~G~C~~G~~C~FaHg~~elr~~~~ 263 (338)
..+.+||++|.+|.|++|++|+||||..||+....
T Consensus 17 ~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~ 51 (69)
T 2d9m_A 17 TGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEE 51 (69)
T ss_dssp CSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHHHH
T ss_pred CCCcccCcccCcCCCCCCCccCCcCCHHHHhhHHH
Confidence 44679999999999999999999999999998533
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.54 E-value=3e-08 Score=76.97 Aligned_cols=63 Identities=21% Similarity=0.553 Sum_probs=48.3
Q ss_pred ccccccccccCCCCCCCCC-CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627 153 HKMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK 231 (338)
Q Consensus 153 ~Kt~lCk~f~~~G~C~~G~-~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K 231 (338)
.+..+|+.|.. |.|.+|+ .|+|+|..... . ....+
T Consensus 7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~-~------------------------------------------~~~~~ 42 (83)
T 3d2n_A 7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSC-Q------------------------------------------VENGR 42 (83)
T ss_dssp GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTC-C------------------------------------------EETTE
T ss_pred ccchhcHHHhc-CCCCCCCCCCCCcCCCccc-c------------------------------------------ccCCc
Confidence 45679998866 9999997 99999985320 0 00124
Q ss_pred cccCcccccccCCCCCCCccCCCcccccc
Q 019627 232 TKLCIKWTQGQCPFGEKCHFAHGQSELQV 260 (338)
Q Consensus 232 t~lC~~f~~G~C~~G~~C~FaHg~~elr~ 260 (338)
..+|.+|++|.|.++ .|+|.|....+..
T Consensus 43 ~~vC~dflkG~C~r~-~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 43 VIACFDSLKGRCSRE-NCKYLHPPPHLKT 70 (83)
T ss_dssp EECCHHHHTTCCCCS-SCSSCCCCHHHHH
T ss_pred eeehhHhhhccccCC-CcceeCChHHHHH
Confidence 567999999999998 9999999877654
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.49 E-value=4.9e-08 Score=76.75 Aligned_cols=62 Identities=21% Similarity=0.575 Sum_probs=48.5
Q ss_pred ccccccccccccccccCCCCC-CCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627 88 NIFFKTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE 166 (338)
Q Consensus 88 ~~~~KT~lC~~f~~G~C~~G~-~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~ 166 (338)
..+.+.++|+.|++|.|.+|+ .|+|+|........ ..++..|..| ..|.
T Consensus 12 ~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~-----------------------------~~~~~vC~df-lkG~ 61 (89)
T 2rpp_A 12 TKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVE-----------------------------NGRVIACFDS-LKGR 61 (89)
T ss_dssp CSSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB-----------------------------TTBEEBCHHH-HHTC
T ss_pred CCcchhhhchHHhcCCCCCCCCCCCCcCCCcccccc-----------------------------CCceeeehhh-hhCc
Confidence 345588999999999999998 99999987753110 1245689877 5689
Q ss_pred CCCCCCCCCCCCCC
Q 019627 167 CPYGDRCNFLHEDP 180 (338)
Q Consensus 167 C~~G~~C~F~H~~~ 180 (338)
|.++ .|+|.|...
T Consensus 62 C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 62 CSRE-NCKYLHPPT 74 (89)
T ss_dssp CCCT-TCCSBCCCH
T ss_pred CCCC-CcceecCHH
Confidence 9987 999999854
No 17
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.7e-08 Score=75.21 Aligned_cols=30 Identities=33% Similarity=0.947 Sum_probs=28.2
Q ss_pred ccccccccccccCCCCCCCCcccCCCCcCC
Q 019627 92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQ 121 (338)
Q Consensus 92 KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~ 121 (338)
|++||.+|.+|.|+||++|+|||+.+||+.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 669999999999999999999999999975
No 18
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.29 E-value=2e-07 Score=73.22 Aligned_cols=62 Identities=21% Similarity=0.573 Sum_probs=47.5
Q ss_pred cccccccccCCCCCCCCC-CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 019627 154 KMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT 232 (338)
Q Consensus 154 Kt~lCk~f~~~G~C~~G~-~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt 232 (338)
+..+|+.|.. |.|.+|+ .|+|+|...... + ..-+.
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~------------------------------v-------------~~~~~ 51 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQ------------------------------V-------------ENGRV 51 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSC------------------------------C-------------BTTBE
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCcccc------------------------------c-------------cCCce
Confidence 4568998865 8999998 999999854210 0 01235
Q ss_pred ccCcccccccCCCCCCCccCCCcccccc
Q 019627 233 KLCIKWTQGQCPFGEKCHFAHGQSELQV 260 (338)
Q Consensus 233 ~lC~~f~~G~C~~G~~C~FaHg~~elr~ 260 (338)
..|.+|++|.|.++ .|+|.|....|..
T Consensus 52 ~vC~dflkG~C~r~-~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 52 IACFDSLKGRCSRE-NCKYLHPPTHLKT 78 (89)
T ss_dssp EBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred eeehhhhhCcCCCC-CcceecCHHHHHH
Confidence 67999999999997 9999999876654
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.98 E-value=3.5e-06 Score=76.26 Aligned_cols=95 Identities=25% Similarity=0.583 Sum_probs=61.4
Q ss_pred ccccccccccCC----CCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchh-------hccccccccccc
Q 019627 94 RLCAKFKHGACR----NGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQK-------IIHKMKLCKKFY 162 (338)
Q Consensus 94 ~lC~~f~~G~C~----~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~-------~~~Kt~lCk~f~ 162 (338)
=+|++|+.|.|+ .+..|+|+|++.... |..-| +..+. .+-..++-. +..=.++|.+|
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~----N~~vL----k~h~l---~~L~~~eL~~LLLQnDp~lLPeiC~~Y- 157 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQ----NFQIL----KNHEL---SGLNQEELACLLVQSDPFFLPEICKSY- 157 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTTCHH----HHHHH----HHTTC---TTCCHHHHHHHHHTTCGGGSCCBCTTC-
T ss_pred eechhhhcCcCCcccCCCCCcccccccCchh----HHHHH----HHcCc---ccCCHhHhhheeccCCCccCchHHHHh-
Confidence 379999999993 468899999886431 11000 00000 000000000 01123689988
Q ss_pred CC----CCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc
Q 019627 163 NG----EECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW 238 (338)
Q Consensus 163 ~~----G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f 238 (338)
++ |.|.+++.|..+|. |.+|
T Consensus 158 kG~g~~g~C~~~~~C~kLHI--------------------------------------------------------C~~F 181 (229)
T 3u9g_A 158 KGEGRKQTCGQPQPCERLHI--------------------------------------------------------CEHF 181 (229)
T ss_dssp CCSSSCCSCSSSSCCCSBCS--------------------------------------------------------CHHH
T ss_pred CCCCCCCcCCCCCCCcceec--------------------------------------------------------cchh
Confidence 53 58999999998885 9999
Q ss_pred ccccCCCCCCCccCCCccc
Q 019627 239 TQGQCPFGEKCHFAHGQSE 257 (338)
Q Consensus 239 ~~G~C~~G~~C~FaHg~~e 257 (338)
..|.|.| ..|.-.|...+
T Consensus 182 l~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 182 TRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp HTTCCCC-SSCSSCCCTTS
T ss_pred hcCCcCC-CCccCccCccC
Confidence 9999999 89999998743
No 20
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.14 E-value=0.0015 Score=45.23 Aligned_cols=27 Identities=30% Similarity=0.699 Sum_probs=24.6
Q ss_pred cccccccccc-cccCCCCCCCCcccCCC
Q 019627 91 FKTRLCAKFK-HGACRNGENCNFAHGME 117 (338)
Q Consensus 91 ~KT~lC~~f~-~G~C~~G~~C~FaH~~~ 117 (338)
.++.||..|. -|.|++|.+|.++|+++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 3789999998 69999999999999986
No 21
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.85 E-value=0.002 Score=44.53 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=25.1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCC
Q 019627 153 HKMKLCKKFYNGEECPYGDRCNFLHEDP 180 (338)
Q Consensus 153 ~Kt~lCk~f~~~G~C~~G~~C~F~H~~~ 180 (338)
.++.+|..|...|.|++|..|.++|+..
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 3567999999999999999999999964
No 22
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.33 E-value=0.0028 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=17.1
Q ss_pred cccccccccccCCCCCCCCcccCC
Q 019627 93 TRLCAKFKHGACRNGENCNFAHGM 116 (338)
Q Consensus 93 T~lC~~f~~G~C~~G~~C~FaH~~ 116 (338)
.+.|+|+.. |.+ ..|.|.|..
T Consensus 9 ~e~CKf~~~--Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 9 LEQCKFGTH--CTN-KRCKYRHAR 29 (80)
Confidence 467988875 989 999999954
No 23
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.19 E-value=0.017 Score=52.81 Aligned_cols=25 Identities=28% Similarity=0.830 Sum_probs=22.2
Q ss_pred ccCcccccccCCCCCCCccCCCccc
Q 019627 233 KLCIKWTQGQCPFGEKCHFAHGQSE 257 (338)
Q Consensus 233 ~lC~~f~~G~C~~G~~C~FaHg~~e 257 (338)
.+|.||.+|.|.+|+.|.|.|....
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSCCC
T ss_pred eEcCccccCCCCCCCCCCccCCCCC
Confidence 4899998899999999999998643
No 24
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=92.91 E-value=0.073 Score=48.12 Aligned_cols=47 Identities=26% Similarity=0.670 Sum_probs=37.9
Q ss_pred cccccccccc----cccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627 91 FKTRLCAKFK----HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE 166 (338)
Q Consensus 91 ~KT~lC~~f~----~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~ 166 (338)
+=-++|.+|+ .|.|.+++.|...| +|++| ..|.
T Consensus 149 lLPeiC~~YkG~g~~g~C~~~~~C~kLH------------------------------------------IC~~F-l~G~ 185 (229)
T 3u9g_A 149 FLPEICKSYKGEGRKQTCGQPQPCERLH------------------------------------------ICEHF-TRGN 185 (229)
T ss_dssp GSCCBCTTCCCSSSCCSCSSSSCCCSBC------------------------------------------SCHHH-HTTC
T ss_pred cCchHHHHhCCCCCCCcCCCCCCCccee------------------------------------------ccchh-hcCC
Confidence 3447899993 25999999999888 79866 5689
Q ss_pred CCCCCCCCCCCCCCc
Q 019627 167 CPYGDRCNFLHEDPA 181 (338)
Q Consensus 167 C~~G~~C~F~H~~~e 181 (338)
|.+ ..|+-+|+..+
T Consensus 186 C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 186 CSY-LNCLRSHNLMD 199 (229)
T ss_dssp CCC-SSCSSCCCTTS
T ss_pred cCC-CCccCccCccC
Confidence 999 89999999643
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.88 E-value=0.037 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=22.3
Q ss_pred cccccccccccCCCCCCCCcccCCC
Q 019627 93 TRLCAKFKHGACRNGENCNFAHGME 117 (338)
Q Consensus 93 T~lC~~f~~G~C~~G~~C~FaH~~~ 117 (338)
..+|-||..|.|.+|+.|.|.|.+.
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred CeEcCccccCCCCCCCCCCccCCCC
Confidence 3499999999999999999999754
No 26
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=46.77 E-value=4.1 Score=36.66 Aligned_cols=24 Identities=25% Similarity=0.593 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCCCCCcccCCC
Q 019627 92 KTRLCAKFKHGACRNGENCNFAHGME 117 (338)
Q Consensus 92 KT~lC~~f~~G~C~~G~~C~FaH~~~ 117 (338)
+..+|.|=+ .|.||.+|+|-|...
T Consensus 191 ~~~~~~~~~--~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGR--KCTYGIKCRFFHPER 214 (223)
T ss_dssp --------------------------
T ss_pred CCCCCCCCc--ccccCCcceecCCcc
Confidence 456798855 599999999999754
No 27
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=46.44 E-value=2.9 Score=32.01 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=8.9
Q ss_pred cccccccccccc
Q 019627 316 NRIYADWLDDMP 327 (338)
Q Consensus 316 ~~iy~dw~d~~~ 327 (338)
--||.||||..-
T Consensus 68 iDVYs~WiDac~ 79 (85)
T 1wii_A 68 VDVYSDWIDACE 79 (85)
T ss_dssp THHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 358999998654
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=40.89 E-value=5.7 Score=35.70 Aligned_cols=24 Identities=29% Similarity=0.719 Sum_probs=0.0
Q ss_pred ccccCcccccccCCCCCCCccCCCcc
Q 019627 231 KTKLCIKWTQGQCPFGEKCHFAHGQS 256 (338)
Q Consensus 231 Kt~lC~~f~~G~C~~G~~C~FaHg~~ 256 (338)
+..+|.|- -.|.+|.+|+|.|.+.
T Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYG--RKCTYGIKCRFFHPER 214 (223)
T ss_dssp --------------------------
T ss_pred CCCCCCCC--cccccCCcceecCCcc
Confidence 56789985 3699999999999875
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=26.80 E-value=36 Score=26.07 Aligned_cols=10 Identities=40% Similarity=1.325 Sum_probs=0.0
Q ss_pred ccCCCCCCCc
Q 019627 241 GQCPFGEKCH 250 (338)
Q Consensus 241 G~C~~G~~C~ 250 (338)
-.|+||.+|.
T Consensus 57 p~C~YG~~CY 66 (89)
T 2kqb_A 57 PECPYGPSCY 66 (89)
T ss_dssp ----------
T ss_pred CCCCCchhhh
Confidence 4689999996
No 30
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=20.58 E-value=26 Score=26.97 Aligned_cols=10 Identities=40% Similarity=1.325 Sum_probs=8.1
Q ss_pred ccCCCCCCCc
Q 019627 241 GQCPFGEKCH 250 (338)
Q Consensus 241 G~C~~G~~C~ 250 (338)
-.|+||.+|.
T Consensus 62 p~C~YG~~CY 71 (91)
T 2kuo_A 62 PECPYGPSCY 71 (91)
T ss_dssp CBCTTGGGCC
T ss_pred CCCCCchhhh
Confidence 4689999995
Done!