BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019629
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/306 (47%), Positives = 193/306 (63%), Gaps = 6/306 (1%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L+ FY SC +AE +V+ A+N + LIRMHFHDCFVRGCDASVL++STA
Sbjct: 1 DLQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTAN 60
Query: 88 NKAERDAVPN-LSLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
N AE+DA+PN SL GFEVI KS +E+ CP VSCADI+A A RDS + ++
Sbjct: 61 NTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNI--TYQ 118
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTF 206
V +GRRDG+VS+A+EA+ +PSP N ++L +F +K LT ++V LSG H+IGV+HC+
Sbjct: 119 VPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSS 178
Query: 207 FSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLAD--TTTTAELDPGSFRKFDSHYYDIL 264
F+NRLYNF DP+L P YAA L+ C + + T T LD + D+ YY +
Sbjct: 179 FTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGV 238
Query: 265 IENKGLFQSDAALLTNKGARNIV-MELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKK 323
GL SD AL+T V N + ++FAQ+M +MG + VLTGTQGEIR
Sbjct: 239 QLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTN 298
Query: 324 CSVINN 329
CSV+N+
Sbjct: 299 CSVVNS 304
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 6/305 (1%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +C +A IVRS + S+ + A LIR+HFHDCFV GCDAS+L++ T
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
++E++A PN+ S GF V++ IK+ LE+ CPG+VSC+D++ALA+ SVS P W
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLA-GGPS-WT 119
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTF 206
VL GRRD + A A+ +PSP + S + F+ GL DLV LSG HT G + C
Sbjct: 120 VLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGV 179
Query: 207 FSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIE 266
F+NRL+NF+G G+ DP+L+ + L+ C +T LD + FD++Y+ L
Sbjct: 180 FNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQS 239
Query: 267 NKGLFQSDAALLTNKGARNIVMEL---RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKK 323
N GL QSD L + G+ I + NQ FF FAQSM MG ++ LTG+ GEIR
Sbjct: 240 NDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLD 299
Query: 324 CSVIN 328
C +N
Sbjct: 300 CKKVN 304
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 172/302 (56%), Gaps = 11/302 (3%)
Query: 29 LRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGN 88
L NFY C +A ++S A + A L+R+HFHDCFV+GCDASVL++ T+
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 89 KAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEV 147
E+ A PN S+ GFEVI+ IKS++ES CPG+VSCADI+A+A RDSV W V
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGAS--WNV 119
Query: 148 LTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFF 207
L GRRD + + + A+ LP+PF N S L F++KG T K+LV LSG HTIG + CT F
Sbjct: 120 LLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAF 179
Query: 208 SNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIEN 267
R+YN + ++DP YA L+ C S+ T + D + KFD+ YY L
Sbjct: 180 RTRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNK 232
Query: 268 KGLFQSDAALLTNKGARNIVMELRNQDKFF-TEFAQSMKRMGAMNVLTGTQGEIRKKCSV 326
KGL SD L + V N F T+F +M +MG ++ LTGT G+IR C
Sbjct: 233 KGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRK 292
Query: 327 IN 328
N
Sbjct: 293 TN 294
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 187/305 (61%), Gaps = 6/305 (1%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FYR++C + IV + + + ++P + A L+R+HFHDCFV+GCD SVL+N+T
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
++E+DA+PN+ S+ G +V+N+IK+ +E+ CP VSCADI+A+A ++ W
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAE--IASVLGGGPGWP 118
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTF 206
V GRRD + A+ LP+PF N ++LK +F +GL DLV LSGGHT G + C+
Sbjct: 119 VPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCST 178
Query: 207 FSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIE 266
F NRLYNF+ G+ DP+L+ Y L+ +C A LD + +FD+ YY L++
Sbjct: 179 FINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQ 238
Query: 267 NKGLFQSDAALLTNKGARNIVME---LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKK 323
GL QSD L + GA I + NQ+ FF+ F SM +MG + VLTG +GEIR +
Sbjct: 239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQ 298
Query: 324 CSVIN 328
C+ +N
Sbjct: 299 CNFVN 303
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/307 (41%), Positives = 178/307 (57%), Gaps = 6/307 (1%)
Query: 26 GGELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINST 85
GG L FY +C +A +VR+I + S+ + A LIR+HFHDCFV GCDAS+L++++
Sbjct: 1 GGSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNS 60
Query: 86 AGNKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL 144
+E++A PN S GF V++ IK+ LE+ CPG+VSC D++ALA++ SVS P
Sbjct: 61 GSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLS-GGPS- 118
Query: 145 WEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHC 204
W V GRRD + A A+ +PSP S + F+ GL DLV LSG HT G + C
Sbjct: 119 WTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATC 178
Query: 205 TFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDIL 264
FSNRL+NF+G G+ DP+L+ + L+ C + + LD + FD++Y+ L
Sbjct: 179 GVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNL 238
Query: 265 IENKGLFQSDAALLTNKGARNIVMEL---RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
N GL QSD L + G+ I + NQ FF FAQSM MG ++ LTG+ GEIR
Sbjct: 239 QSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIR 298
Query: 322 KKCSVIN 328
C N
Sbjct: 299 LDCKKTN 305
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 228 bits (580), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 182/317 (57%), Gaps = 9/317 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 118
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 298
Query: 322 KKCSVINNPDSLLHSSI 338
C V+N+ +SLLH +
Sbjct: 299 LNCRVVNS-NSLLHDMV 314
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 176/307 (57%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 119
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + ++D + FD+ YY L
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLE 239
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 299
Query: 322 KKCSVIN 328
C V+N
Sbjct: 300 LNCRVVN 306
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 175/307 (57%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 119
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 299
Query: 322 KKCSVIN 328
C V+N
Sbjct: 300 LNCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 223 bits (569), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 175/307 (57%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 118
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 298
Query: 322 KKCSVIN 328
C V+N
Sbjct: 299 LNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 223 bits (569), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 175/307 (57%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 118
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 298
Query: 322 KKCSVIN 328
C V+N
Sbjct: 299 LNCRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 174/307 (56%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 119
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 299
Query: 322 KKCSVIN 328
C V+N
Sbjct: 300 LNCRVVN 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 177/308 (57%), Gaps = 14/308 (4%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L + Y SC + IVR + + A LIR+HFHDCFV GCDAS+L++ G
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD---G 57
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+E+ A+PN+ S GFEVI+ IK+ +E+ CPG+VSCADI+ LA RDSV P W
Sbjct: 58 ADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLS-GGPG-WR 115
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTF 206
V GR+DG V+ A+ L PSPF + F L + D+V LSG HT G + C
Sbjct: 116 VALGRKDGLVANQNSANNL-PSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAV 174
Query: 207 FSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIE 266
FSNRL+NFTG G+ D +L+ + L+T C ++ TA LD + FD++Y+ L+E
Sbjct: 175 FSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLE 234
Query: 267 NKGLFQSDAALLTNKGARNIVMEL-----RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
KGL SD L ++ A N +L R+Q FF +F +M RMG N+ G GE+R
Sbjct: 235 GKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMG--NISNGASGEVR 292
Query: 322 KKCSVINN 329
C VINN
Sbjct: 293 TNCRVINN 300
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 174/307 (56%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 119
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 299
Query: 322 KKCSVIN 328
C V+N
Sbjct: 300 LNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 175/307 (57%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 118
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV LSGGH+ G + C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCR 178
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 298
Query: 322 KKCSVIN 328
C V+N
Sbjct: 299 LNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 174/307 (56%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 118
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV L GGHT G + C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCR 178
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 298
Query: 322 KKCSVIN 328
C V+N
Sbjct: 299 LNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 174/307 (56%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HF DCFV GCDAS+L+++T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 119
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 299
Query: 322 KKCSVIN 328
C V+N
Sbjct: 300 LNCRVVN 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 174/307 (56%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++R+HFHDCFV GCDAS+L+++T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 119
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
+RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 180 SIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 299
Query: 322 KKCSVIN 328
C V+N
Sbjct: 300 LNCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 173/307 (56%), Gaps = 8/307 (2%)
Query: 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAG 87
+L FY +SC + +IVR S+P + A ++ +HF DCFV GCDAS+L+++T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 88 NKAERDAVPNL-SLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWE 146
+ E+DA N S GF VI+ +K+ +ES CP VSCAD++ +A + SV+ P W
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPS-WR 118
Query: 147 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLT-VKDLVVLSGGHTIGVSHCT 205
V GRRD + A+ LP+PF +LK +F + GL DLV LSGGHT G + C
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 206 FFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265
F +RLYNF+ G DP+L+ Y L+ C + + + D + FD+ YY L
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 266 ENKGLFQSDAALLTNKGARNIVMELR----NQDKFFTEFAQSMKRMGAMNVLTGTQGEIR 321
E KGL QSD L ++ A + + +R + FF F ++M RMG + LTGTQG+IR
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIR 298
Query: 322 KKCSVIN 328
C V+N
Sbjct: 299 LNCRVVN 305
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 174/303 (57%), Gaps = 15/303 (4%)
Query: 32 NFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAE 91
+FY +C AE IVR + + L A L+R+HFHDCFV+GCDASVL++ +A E
Sbjct: 12 DFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGE 71
Query: 92 RDAVPNLSL--GGFEVINEIKSELESRCPG-IVSCADIVALATRDSVSFQFQKPDLWEVL 148
+ A PNL+L F+ +N+I+ LE C G +VSC+DI+ALA RDSV PD + V
Sbjct: 72 QQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVS-GGPD-YRVP 129
Query: 149 TGRRDGSVSIAAEADLL--LPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTF 206
GRRD S S A+ D+L LP P +N L GL DLV +SGGHTIG++HC+
Sbjct: 130 LGRRD-SRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSS 188
Query: 207 FSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIE 266
F +RL+ DP++ P + + LK C + T LD + FD+ YY L+
Sbjct: 189 FEDRLFP-----RPDPTISPTFLSRLKRTCPAKGTDRRTV-LDVRTPNVFDNKYYIDLVN 242
Query: 267 NKGLFQSDAALLTNKGARNIVMEL-RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCS 325
+GLF SD L TN R IV ++Q FF +F S+ +MG M V T QGE+R+ CS
Sbjct: 243 REGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCS 302
Query: 326 VIN 328
V N
Sbjct: 303 VRN 305
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 161 GLTDQDIVALSGGHTIGAAH-----KEASGFEGPWTSNPLI------------------- 196
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 161 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 196
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 161 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 196
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 149 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 184
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 185 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 233 DYAEAHQKLSELG 245
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 161 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 196
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 149 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 184
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 185 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 233 DYAEAHQKLSELG 245
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 149 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 184
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 185 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 233 DYAEAHQKLSELG 245
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 161 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 196
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 161 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 196
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 161 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 196
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GLT +D+V LSGGHTIG +H F G +P +
Sbjct: 149 GLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 184
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E +GL Q SD ALL++ R +V + ++D FF
Sbjct: 185 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 299 EFAQSMKRMGAMN 311
++A++ +++ +
Sbjct: 233 DYAEAHQKLSELG 245
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 41/133 (30%)
Query: 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTT 243
GL+ +D+V LSGGHTIG +H F G +P +
Sbjct: 149 GLSDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI------------------- 184
Query: 244 TTAELDPGSFRKFDSHYYDILI--ENKGLFQ--SDAALLTNKGARNIVMEL-RNQDKFFT 298
FD+ Y+ L+ E GL Q SD ALLT+ R +V + ++D FF
Sbjct: 185 ------------FDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFA 232
Query: 299 EFAQSMKRMGAMN 311
++A++ ++ +
Sbjct: 233 DYAEAHLKLSELG 245
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 100/277 (36%), Gaps = 73/277 (26%)
Query: 58 DLPAKLIRMHFH-----DCFVRGCD---ASVLINST---AGNKAERDAVPNLSLGGFEVI 106
+L LIR+ +H DCF + AS+ AGNK G ++
Sbjct: 25 ELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNK------------GLDIP 72
Query: 107 NEIKSELESRCPGIVSCADIVALATRDSVSFQFQK--PDLWEVLTGRRDGSVSIAAEADL 164
+ L+ + P I S AD+ LA ++ + P W GR D D
Sbjct: 73 RKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCW----GRVDAKDGSVCGPDG 127
Query: 165 LLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTF-------------FSNRL 211
LP S +++ F G ++ V L G HT G +H F F N
Sbjct: 128 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSF 187
Query: 212 YNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLF 271
FT D+D L+P K + L D TT + +
Sbjct: 188 --FTQLLDEDWVLNP------KVEQMQLMDRATTKLM---------------------ML 218
Query: 272 QSDAALLTNKGARNIV-MELRNQDKFFTEFAQSMKRM 307
SD LL + R V + ++ D+F +FA + K++
Sbjct: 219 PSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKL 255
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 99/277 (35%), Gaps = 73/277 (26%)
Query: 58 DLPAKLIRMHFH-----DCFVRGCD---ASVLINST---AGNKAERDAVPNLSLGGFEVI 106
+L LIR+ +H DCF + AS+ AGNK G ++
Sbjct: 24 ELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNK------------GLDIP 71
Query: 107 NEIKSELESRCPGIVSCADIVALATRDSVSFQFQK--PDLWEVLTGRRDGSVSIAAEADL 164
+ L+ + P I S AD+ LA ++ + P W GR D D
Sbjct: 72 RKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCW----GRVDAKDGSVCGPDG 126
Query: 165 LLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTF-------------FSNRL 211
LP S +++ F G ++ V L G HT G H F F N
Sbjct: 127 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSF 186
Query: 212 YNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLF 271
FT D+D L+P K + L D TT + +
Sbjct: 187 --FTQLLDEDWVLNP------KVEQMQLMDRATTKLM---------------------ML 217
Query: 272 QSDAALLTNKGARNIV-MELRNQDKFFTEFAQSMKRM 307
SD LL + R V + ++ D+F +FA + K++
Sbjct: 218 PSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKL 254
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 99/277 (35%), Gaps = 73/277 (26%)
Query: 58 DLPAKLIRMHFH-----DCFVRGCD---ASVLINST---AGNKAERDAVPNLSLGGFEVI 106
+L LIR+ +H DCF + AS+ AGNK G ++
Sbjct: 25 ELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNK------------GLDIP 72
Query: 107 NEIKSELESRCPGIVSCADIVALATRDSVSFQFQK--PDLWEVLTGRRDGSVSIAAEADL 164
+ L+ + P I S AD+ LA ++ + P W GR D D
Sbjct: 73 RKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCW----GRVDAKDGSVCGPDG 127
Query: 165 LLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTF-------------FSNRL 211
LP S +++ F G ++ V L G HT G H F F N
Sbjct: 128 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSF 187
Query: 212 YNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLF 271
FT D+D L+P K + L D TT + +
Sbjct: 188 --FTQLLDEDWVLNP------KVEQMQLMDRATTKLM---------------------ML 218
Query: 272 QSDAALLTNKGARNIV-MELRNQDKFFTEFAQSMKRM 307
SD LL + R V + ++ D+F +FA + K++
Sbjct: 219 PSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKL 255
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVYLLASHSIAAA 174
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 28/208 (13%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 139
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H N Y G
Sbjct: 140 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---KNSGYEGPGGAAN 195
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + Y L K + + D S Y +L N L Q L
Sbjct: 196 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTNYSLIQDPKYL--- 245
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 246 ----SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIAAA 174
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202
GR D ++AA D L+P PF + + D G + ++V L H+I +
Sbjct: 125 GRPD---AVAASPDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 28/208 (13%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 139
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H N Y G
Sbjct: 140 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---KNSGYEGPGGAAN 195
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + Y L K + + D S + +D +L+ +
Sbjct: 196 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTDYSLIQD 241
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 28/208 (13%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 139
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H N Y G
Sbjct: 140 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---KNSGYEGPGGAAN 195
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + Y L K + + D S + +D +L+ +
Sbjct: 196 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTDYSLIQD 241
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 28/208 (13%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 141
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H N Y G
Sbjct: 142 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---KNSGYEGPGGAAN 197
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + Y L K + + D S + +D +L+ +
Sbjct: 198 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTDYSLIQD 243
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 244 PKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 28/208 (13%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 136
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H N Y G
Sbjct: 137 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---KNSGYEGPGGAAN 192
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + Y L K + + D S + +D +L+ +
Sbjct: 193 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTDYSLIQD 238
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 28/208 (13%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 137
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H N Y G
Sbjct: 138 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---KNSGYEGPGGAAN 193
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + Y L K + + D S + +D +L+ +
Sbjct: 194 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTDYSLIQD 239
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 240 PKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 32/156 (20%)
Query: 167 PSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHC--TFFSNRLYNFTGNGDQDPSL 224
PSP + L+ F GL K++V LSG HT+G S + + +T +G P
Sbjct: 136 PSPAQH---LRDVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGG 192
Query: 225 DPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKG----LFQSDAALLTN 280
A +L KFD+ Y+ + E + + +DAAL +
Sbjct: 193 QSWTAQWL----------------------KFDNSYFKDIKERRDEDLLVLPTDAALFED 230
Query: 281 KGARNIVMEL-RNQDKFFTEFAQSMKRMGAMNVLTG 315
+ + + + FF ++A++ ++ + G
Sbjct: 231 PSFKVYAEKYAADPEAFFKDYAEAHAKLSNLGAKFG 266
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 30/208 (14%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 142
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H + + G G
Sbjct: 143 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGGGAN 196
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + Y L K + + D S + +D +L+ +
Sbjct: 197 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTDYSLIQD 242
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 243 PKYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 30/208 (14%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 136
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H + + G G
Sbjct: 137 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGGGAN 190
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + Y L K + + D S + +D +L+ +
Sbjct: 191 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTDYSLIQD 236
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 237 PKYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 139
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G HT+G +H + + G
Sbjct: 140 D-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL-----KNSGYEGPWTA 193
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+P++ F + +L + E + + ++DS +++ +D +L+ +
Sbjct: 194 NPNV------FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMML------PTDYSLIQD 241
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 30/208 (14%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 137
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H + + G G
Sbjct: 138 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGGGAN 191
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + Y L K + + D S + +D +L+ +
Sbjct: 192 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTDYSLIQD 237
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 238 PKYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 139
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G HT+G +H N
Sbjct: 140 D-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK-----------NSGY 187
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ D F + +L + E + + ++DS +++ +D +L+ +
Sbjct: 188 EGPWDATNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMML------PTDYSLIQD 241
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 28/208 (13%)
Query: 102 GFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDL-WEVLTGRRDGSVSIAA 160
GF+ + I E +S D+ +L +V + Q P + W GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQ-EMQGPKIPWRC--GRVDTPEDTTP 136
Query: 161 EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQ 220
+ + LP + ++ F + +++V L G H +G +H N Y
Sbjct: 137 D-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---KNSGYEGPWGAAN 192
Query: 221 DPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN 280
+ + +Y L K + + D S + +D +L+ +
Sbjct: 193 NVFTNEKYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTDYSLIQD 238
Query: 281 KGARNIVMELRN-QDKFFTEFAQSMKRM 307
+IV E N QDKFF +F+++ +++
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 90 AERDAVPNLSLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVL- 148
AE + +P+ ++ ++ E+ P IVS D++ ++ F+F + DL +VL
Sbjct: 57 AEDEGIPSTAIREISLLKELHH------PNIVSLIDVIHSERCLTLVFEFMEKDLKKVLD 110
Query: 149 ---TGRRDGSVSI 158
TG +D + I
Sbjct: 111 ENKTGLQDSQIKI 123
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 90 AERDAVPNLSLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVL- 148
AE + +P+ ++ ++ E+ P IVS D++ ++ F+F + DL +VL
Sbjct: 57 AEDEGIPSTAIREISLLKELHH------PNIVSLIDVIHSERCLTLVFEFMEKDLKKVLD 110
Query: 149 ---TGRRDGSVSI 158
TG +D + I
Sbjct: 111 ENKTGLQDSQIKI 123
>pdb|3TJ1|A Chain A, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
pdb|3TJ1|B Chain B, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
Length = 649
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 181 NDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSL 239
NDK L + ++ S + I S TF + NF + P +Y F+K C S+
Sbjct: 111 NDKNLNILLDILSSNINRIESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSI 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,054,758
Number of Sequences: 62578
Number of extensions: 415932
Number of successful extensions: 1602
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 67
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)