Query 019629
Match_columns 338
No_of_seqs 180 out of 1495
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:17:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 2E-107 3E-112 783.6 26.7 299 24-328 20-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1E-100 3E-105 733.4 25.4 297 28-327 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.1E-71 2.4E-76 516.8 7.3 227 45-292 1-229 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 6.6E-69 1.4E-73 509.7 19.0 230 43-325 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 8.4E-66 1.8E-70 482.9 16.3 229 40-314 11-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.3E-64 2.9E-69 473.4 19.2 230 31-313 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 3.4E-64 7.3E-69 485.2 19.1 237 41-329 16-288 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 3.7E-62 8E-67 456.4 19.1 219 42-313 17-248 (251)
9 cd00314 plant_peroxidase_like 100.0 2.8E-58 6E-63 432.5 15.8 223 44-309 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 8.4E-55 1.8E-59 426.5 18.2 257 43-318 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 6.4E-52 1.4E-56 429.1 19.8 252 43-314 55-404 (716)
12 cd08201 plant_peroxidase_like_ 100.0 7.9E-51 1.7E-55 380.1 10.8 219 45-309 27-264 (264)
13 PRK15061 catalase/hydroperoxid 100.0 1.9E-48 4.1E-53 401.3 19.2 254 43-315 57-411 (726)
14 cd08200 catalase_peroxidase_2 100.0 1.1E-36 2.4E-41 288.2 15.5 221 46-311 16-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 3.4E-32 7.4E-37 282.5 14.8 220 44-312 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 9.8E-32 2.1E-36 277.8 14.9 220 47-312 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 7.3E-28 1.6E-32 239.3 15.7 234 58-311 93-416 (730)
18 COG0376 KatG Catalase (peroxid 99.3 2.4E-11 5.2E-16 122.3 13.1 214 48-311 453-725 (730)
19 PF11895 DUF3415: Domain of un 69.3 4.9 0.00011 31.7 2.8 30 295-328 2-31 (80)
20 COG3763 Uncharacterized protei 44.3 26 0.00056 27.0 2.9 30 43-72 23-52 (71)
21 PF09680 Tiny_TM_bacill: Prote 32.0 47 0.001 20.3 2.1 19 6-24 3-21 (24)
22 KOG0427 Ubiquitin conjugating 30.7 35 0.00076 29.4 2.0 41 14-71 117-159 (161)
23 PRK01844 hypothetical protein; 28.2 74 0.0016 24.7 3.1 29 44-72 24-52 (72)
24 PF08782 c-SKI_SMAD_bind: c-SK 26.4 22 0.00047 29.0 -0.0 15 67-82 4-18 (96)
25 TIGR01732 tiny_TM_bacill conse 26.1 71 0.0015 19.9 2.2 18 6-23 5-22 (26)
26 PRK00523 hypothetical protein; 24.7 1E+02 0.0023 23.8 3.4 28 44-71 25-52 (72)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.6e-107 Score=783.60 Aligned_cols=299 Identities=46% Similarity=0.813 Sum_probs=284.1
Q ss_pred hcCCCCCcCcccccChhHHHHHHHHHHHHHhcCCCccchhhhhhcccccCCCCCceEeecCCCCCcccccCCCCCCCchh
Q 019629 24 CQGGELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLSLGGF 103 (338)
Q Consensus 24 ~~~~~l~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~aa~lLRL~FHDcfv~GCDgSill~~~~~~~~E~~~~~N~~L~g~ 103 (338)
+++++|+++||++|||++|+||++.|++.+.+||+++|++|||+||||||+||||||||+++ ..||++++|.+|+||
T Consensus 20 ~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l~Gf 96 (324)
T PLN03030 20 VQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLLRGY 96 (324)
T ss_pred chhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCcchH
Confidence 34567999999999999999999999999999999999999999999999999999999964 369999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchhhhhcCCCCCCCCHHHHHHHHHhC
Q 019629 104 EVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDK 183 (338)
Q Consensus 104 ~~I~~iK~~le~~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~~a~~~lP~p~~~~~~l~~~F~~~ 183 (338)
++|+.||+++|++||++||||||||+||||||+++ || |.|+|++||||+++|.+.++. +||.|+.++++|++.|+++
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~-gG-P~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~ 173 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLT-NG-LTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAK 173 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhcccccc-CC-CceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999 99 999999999999999887774 8999999999999999999
Q ss_pred CCCccCcEEeeccccccccccccccccccccCCCC-CCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchHHHH
Q 019629 184 GLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNG-DQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYD 262 (338)
Q Consensus 184 Gls~~dlVaLsGaHtiG~~hc~~f~~Rl~~f~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~Yy~ 262 (338)
||+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|+..|++.||..+++++.+++|+.||.+|||+||+
T Consensus 174 Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~ 253 (324)
T PLN03030 174 GLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFS 253 (324)
T ss_pred CCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHH
Confidence 99999999999999999999999999999999875 58999999999999999996433344688999999999999999
Q ss_pred HHhhcccCCccchhccCCcchHHHHHHhhc-h----HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 019629 263 ILIENKGLFQSDAALLTNKGARNIVMELRN-Q----DKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 328 (338)
Q Consensus 263 ~l~~~~glL~SD~~L~~d~~t~~~V~~yA~-~----~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~vn 328 (338)
||++++|+|+|||+|++|++|+++|++||. + ++|+++|++||+|||+|+|+||.+||||++|++||
T Consensus 254 nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 254 NLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 999999999999999999999999999997 5 49999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.3e-100 Score=733.41 Aligned_cols=297 Identities=55% Similarity=0.931 Sum_probs=287.5
Q ss_pred CCCcCcccccChhHHHHHHHHHHHHHhcCCCccchhhhhhcccccCCCCCceEeecCCCCCcccccCCCCCCCchhHHHH
Q 019629 28 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLSLGGFEVIN 107 (338)
Q Consensus 28 ~l~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~aa~lLRL~FHDcfv~GCDgSill~~~~~~~~E~~~~~N~~L~g~~~I~ 107 (338)
||+++||++|||++|+||++.|++.+.++++++|++|||+||||||+||||||||+++.++.+|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 59999999999999999999999999999999999999999999999999999999887677899999999999999999
Q ss_pred HHHHHhhhcCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchhhhhcCCCCCCCCHHHHHHHHHhCCCCc
Q 019629 108 EIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTV 187 (338)
Q Consensus 108 ~iK~~le~~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~~a~~~lP~p~~~~~~l~~~F~~~Gls~ 187 (338)
.||+++|+.||++||||||||||||+||+++ || |.|+|++||+|+.++.+..+ .+||.|+.+++++++.|+++||++
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~-GG-P~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLA-GG-PSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceecc-CC-CcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999999 99 99999999999998887665 789999999999999999999999
Q ss_pred cCcEEeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchHHHHHHhhc
Q 019629 188 KDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIEN 267 (338)
Q Consensus 188 ~dlVaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~ 267 (338)
+|||||+||||||++||.+|.+|||+|+|++.+||+|++.|+..|++.||+.+++++.+++|+.||.+|||+||++|+.+
T Consensus 158 ~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~ 237 (298)
T cd00693 158 TDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAG 237 (298)
T ss_pred HHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhc
Confidence 99999999999999999999999999999988999999999999999999865566788999999999999999999999
Q ss_pred ccCCccchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHhhcCCCCCCCCCccccccccc
Q 019629 268 KGLFQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVI 327 (338)
Q Consensus 268 ~glL~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~v 327 (338)
+|+|+|||+|+.|++|+++|++||. |+.|+++|+.||+||++|+|+||.+||||++|++|
T Consensus 238 ~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 238 RGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred ccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999999999999999 99999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.1e-71 Score=516.84 Aligned_cols=227 Identities=47% Similarity=0.785 Sum_probs=209.4
Q ss_pred HHHHHHHHHhcCCCccchhhhhhcccccC-CCCCceEeecCCCCCcccccCCCCCCCc-hhHHHHHHHHHhhhcCCCCCc
Q 019629 45 VRSITWKNAASNPDLPAKLIRMHFHDCFV-RGCDASVLINSTAGNKAERDAVPNLSLG-GFEVINEIKSELESRCPGIVS 122 (338)
Q Consensus 45 V~~~v~~~~~~~~~~aa~lLRL~FHDcfv-~GCDgSill~~~~~~~~E~~~~~N~~L~-g~~~I~~iK~~le~~cp~~VS 122 (338)
||+.|++.+..+++++|+||||+|||||+ +|||||||+. ..|+++++|.+|+ ++++|+.||+++|.+||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 89999999999999999999999999999 9999999993 3799999999999 999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchhhhhcCCCCCCCCHHHHHHHHHhCCCCccCcEEeecccccccc
Q 019629 123 CADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVS 202 (338)
Q Consensus 123 cADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~~a~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHtiG~~ 202 (338)
|||||++|||+||+++ || |.|+|++||+|+.++++.++ .+||.|+.++++|++.|+++|||++|||||+||||||++
T Consensus 76 ~ADiialAa~~av~~~-GG-P~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~ 152 (230)
T PF00141_consen 76 CADIIALAARDAVELC-GG-PRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRA 152 (230)
T ss_dssp HHHHHHHHHHHHHHHT-TG-GHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEE
T ss_pred HHHHHHHHhhhccccc-cc-cccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccc
Confidence 9999999999999999 99 99999999999999999877 789999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchHHHHHHhhcccCCccchhccCCcc
Q 019629 203 HCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKG 282 (338)
Q Consensus 203 hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~ 282 (338)
||.+|. ||| + .+||+||+.|+.. .| ..+ +++.+++| ||.+|||+||+++++++|+|+||++|++|++
T Consensus 153 ~c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~-~~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~ 219 (230)
T PF00141_consen 153 HCSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSG-GDNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPE 219 (230)
T ss_dssp SGGCTG-GTS-C----SSGTTSTHHHHHH---SS-STS-GCTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTT
T ss_pred eecccc-ccc-c----cccccccccccee---cc-CCC-cccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHH
Confidence 999999 999 4 5799999999987 99 332 33378888 9999999999999999999999999999999
Q ss_pred hHHHHHHhhc
Q 019629 283 ARNIVMELRN 292 (338)
Q Consensus 283 t~~~V~~yA~ 292 (338)
|+.+|++||+
T Consensus 220 t~~~V~~yA~ 229 (230)
T PF00141_consen 220 TRPIVERYAQ 229 (230)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999984
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=6.6e-69 Score=509.67 Aligned_cols=230 Identities=26% Similarity=0.386 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhccccc-------CCCCCceEeecCCCCCcccccCCCCCCCc-hhHHHHHHHHHhh
Q 019629 43 DIVRSITWKNAASNPDLPAKLIRMHFHDCF-------VRGCDASVLINSTAGNKAERDAVPNLSLG-GFEVINEIKSELE 114 (338)
Q Consensus 43 ~iV~~~v~~~~~~~~~~aa~lLRL~FHDcf-------v~GCDgSill~~~~~~~~E~~~~~N~~L~-g~~~I~~iK~~le 114 (338)
+.+++++ ..+.++|.++|.+|||+||||| ++||||||+++ .|+++++|.+|+ ||++|+.||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-
Confidence 4455566 4577899999999999999999 99999999985 699999999995 999999999987
Q ss_pred hcCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchhhhhcCCCCCCCCHHHHHHHHHhCCCCccCcEEee
Q 019629 115 SRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLS 194 (338)
Q Consensus 115 ~~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~~a~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs 194 (338)
++|||||||+||||+||+++ || |.|+|++||+|++++++ +.+||+|+.+++++++.|+++|||++|||||+
T Consensus 87 ----~~VScADilalAardAV~~~-GG-P~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLs 157 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVT-GG-PTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALS 157 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhc-CC-CccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhc
Confidence 48999999999999999999 99 99999999999999864 46899999999999999999999999999999
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchHHHHHHhhc--ccC--
Q 019629 195 GGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIEN--KGL-- 270 (338)
Q Consensus 195 GaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~--~gl-- 270 (338)
||||||++||. |+ +|.| | . ..||.+|||+||++++.+ +|+
T Consensus 158 GAHTiG~ahc~----r~-g~~g--------------------~----------~-~~Tp~~FDN~Yy~~ll~~~~~gll~ 201 (289)
T PLN02608 158 GGHTLGRAHPE----RS-GFDG--------------------P----------W-TKEPLKFDNSYFVELLKGESEGLLK 201 (289)
T ss_pred ccccccccccc----CC-CCCC--------------------C----------C-CCCCCccChHHHHHHHcCCcCCccc
Confidence 99999999994 55 3322 1 1 168999999999999999 788
Q ss_pred CccchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 019629 271 FQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCS 325 (338)
Q Consensus 271 L~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~ 325 (338)
|+|||+|+.|++|+.+|++||. |++|+++|++||+||++|+|+||.+||+.+.-+
T Consensus 202 L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 202 LPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred cccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 7999999999999999999999 999999999999999999999999999988654
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=8.4e-66 Score=482.90 Aligned_cols=229 Identities=24% Similarity=0.304 Sum_probs=207.1
Q ss_pred hHHHHHHHHHHHHHhcCCCccchhhhhhcccccCCCCCceEeecCCC---CCcccccCCCCCCC-chhHHHHHHHHHhhh
Q 019629 40 SAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTA---GNKAERDAVPNLSL-GGFEVINEIKSELES 115 (338)
Q Consensus 40 ~~e~iV~~~v~~~~~~~~~~aa~lLRL~FHDcfv~GCDgSill~~~~---~~~~E~~~~~N~~L-~g~~~I~~iK~~le~ 115 (338)
..++||++.|++.+. +++++|.+|||+|||||+ ||+|++++... .+.+|+++++|.+| ++|++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 999999999999999994 87777775432 22469999999999 7999999999987
Q ss_pred cCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchhhhhcCCCCCCCCHHHHHHHHHhCCCCccCcEEeec
Q 019629 116 RCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSG 195 (338)
Q Consensus 116 ~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~~a~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsG 195 (338)
| +|||||||++|||+||+.+ || |.|+|++||+|+.++....++.+||.|+.+++++++.|+++|||++|||||+|
T Consensus 86 --~-~VScADilalAar~Av~~~-GG-P~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsG 160 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEM-GG-PKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSG 160 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHc-CC-CccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcc
Confidence 4 8999999999999999999 99 99999999999999987777788999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchHHHHHHhhccc------
Q 019629 196 GHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKG------ 269 (338)
Q Consensus 196 aHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~g------ 269 (338)
|||||++||.. ++|.|. |..||.+|||+||++|+.++|
T Consensus 161 aHTiG~a~c~~-----~~~~g~-------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~ 204 (253)
T cd00691 161 AHTLGRCHKER-----SGYDGP-------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPG 204 (253)
T ss_pred cceeecccccC-----CCCCCC-------------------------------CCCCCCcccHHHHHHHhcCCCccCcCc
Confidence 99999999953 233220 115899999999999999999
Q ss_pred --CCccchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHhhcCCCCC
Q 019629 270 --LFQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRMGAMNVLT 314 (338)
Q Consensus 270 --lL~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~t 314 (338)
+|+||++|+.|++|+.+|++||. +++|+++|++||+||++++|..
T Consensus 205 ~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 205 LLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred ceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999 9999999999999999999863
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.3e-64 Score=473.43 Aligned_cols=230 Identities=27% Similarity=0.404 Sum_probs=207.2
Q ss_pred cCcccc--cChhHHHHHHHHHHHHHhcCCCccchhhhhhcc-----cccCC--CCCceEeecCCCCCcccccCCCCCCC-
Q 019629 31 KNFYRD--SCKSAEDIVRSITWKNAASNPDLPAKLIRMHFH-----DCFVR--GCDASVLINSTAGNKAERDAVPNLSL- 100 (338)
Q Consensus 31 ~~fY~~--sCp~~e~iV~~~v~~~~~~~~~~aa~lLRL~FH-----Dcfv~--GCDgSill~~~~~~~~E~~~~~N~~L- 100 (338)
.+||.. -|+.+++.+++.+++.+ .+++++|.||||+|| ||+++ ||||||..+ +|+++++|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~------~E~~~~~N~gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD------AEQAHGANSGIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc------ccccCCCccCHH
Confidence 357764 48999999999999977 889999999999999 88876 999999553 69999999999
Q ss_pred chhHHHHHHHHHhhhcCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchhhhhcCCCCCCCCHHHHHHHH
Q 019629 101 GGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNF 180 (338)
Q Consensus 101 ~g~~~I~~iK~~le~~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~~a~~~lP~p~~~~~~l~~~F 180 (338)
+||++|+.||+++ ++|||||||+||||+||+++ || |.|+|++||+|++++++ +.+||.|+.++++|++.|
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilalAardAV~~~-GG-P~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F 145 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVT-GG-PDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVF 145 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhc-CC-CeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHH
Confidence 6999999999998 48999999999999999999 99 99999999999999875 457999999999999999
Q ss_pred Hh-CCCCccCcEEeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchH
Q 019629 181 ND-KGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSH 259 (338)
Q Consensus 181 ~~-~Gls~~dlVaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~ 259 (338)
++ +|||++|||||+||||||++|| .|+ +|.| + ++ .||.+|||+
T Consensus 146 ~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g--------------------~----------~~-~tp~~fDn~ 189 (250)
T PLN02364 146 AKQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEG--------------------A----------WT-SNPLIFDNS 189 (250)
T ss_pred HHhcCCCHHHheeeecceeeccccC----CCC-CCCC--------------------C----------CC-CCCCccchH
Confidence 97 6999999999999999999999 454 3322 0 11 689999999
Q ss_pred HHHHHhhc--ccCCc--cchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHhhcCCCC
Q 019629 260 YYDILIEN--KGLFQ--SDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRMGAMNVL 313 (338)
Q Consensus 260 Yy~~l~~~--~glL~--SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~ 313 (338)
||++|+.+ +|+|. |||+|+.|++|+.+|++||. +++|+++|++||+||++|++-
T Consensus 190 Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 190 YFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999 89876 99999999999999999999 999999999999999999863
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.4e-64 Score=485.24 Aligned_cols=237 Identities=22% Similarity=0.308 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHhcCC---CccchhhhhhcccccC------------CCCCceEeecCCCCCcccccCCCCCCCchhHH
Q 019629 41 AEDIVRSITWKNAASNP---DLPAKLIRMHFHDCFV------------RGCDASVLINSTAGNKAERDAVPNLSLGGFEV 105 (338)
Q Consensus 41 ~e~iV~~~v~~~~~~~~---~~aa~lLRL~FHDcfv------------~GCDgSill~~~~~~~~E~~~~~N~~L~g~~~ 105 (338)
+|..|++.+++.+..+. ..|+.+|||+||||++ +||||||||+++ .|+++++|.||+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~--~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD--EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH--HH
Confidence 48899999999998554 5677799999999996 899999999853 699999999998 99
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchhhhhcCCCCCCCCHHHHHHHHHhCCC
Q 019629 106 INEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGL 185 (338)
Q Consensus 106 I~~iK~~le~~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~~a~~~lP~p~~~~~~l~~~F~~~Gl 185 (338)
|+.||..+|+.| |||||||+||||+||+.++|| |.|+|++||+|++++.+ +.+||.|+.++++|++.|+++||
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GG-P~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf 162 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGA-PRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGF 162 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCC-CcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCC
Confidence 999999999998 999999999999999954499 99999999999999875 45899999999999999999999
Q ss_pred CccCcEEeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchHHHHHHh
Q 019629 186 TVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILI 265 (338)
Q Consensus 186 s~~dlVaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~Yy~~l~ 265 (338)
|++|||||+||||||++|. +||+++. .++| .||.+|||+||+|++
T Consensus 163 ~~~E~VaLsGAHTiG~a~~---------------~Dps~~g-------------------~p~D-~TP~~FDn~Yf~~ll 207 (328)
T cd00692 163 SPDELVALLAAHSVAAQDF---------------VDPSIAG-------------------TPFD-STPGVFDTQFFIETL 207 (328)
T ss_pred CHHHHhhhcccccccccCC---------------CCCCCCC-------------------CCCC-CCcchhcHHHHHHHH
Confidence 9999999999999999982 3666641 4577 699999999999987
Q ss_pred -hccc-------------------CCccchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHhhcCCCCCCCCCcccccc
Q 019629 266 -ENKG-------------------LFQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKC 324 (338)
Q Consensus 266 -~~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C 324 (338)
.+++ +|+||++|+.|++|+.+|++||+ |++|+++|++||+||++|||. ...+.+|
T Consensus 208 ~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dc 283 (328)
T cd00692 208 LKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDC 283 (328)
T ss_pred HcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccC
Confidence 4555 49999999999999999999999 999999999999999999876 3589999
Q ss_pred ccccC
Q 019629 325 SVINN 329 (338)
Q Consensus 325 ~~vn~ 329 (338)
+.|++
T Consensus 284 s~v~p 288 (328)
T cd00692 284 SDVIP 288 (328)
T ss_pred cccCC
Confidence 99994
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=3.7e-62 Score=456.42 Aligned_cols=219 Identities=23% Similarity=0.323 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhhcccccC-------CCCCceEeecCCCCCcccccCCCCCCCc-hhHHHHHHHHHh
Q 019629 42 EDIVRSITWKNAASNPDLPAKLIRMHFHDCFV-------RGCDASVLINSTAGNKAERDAVPNLSLG-GFEVINEIKSEL 113 (338)
Q Consensus 42 e~iV~~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GCDgSill~~~~~~~~E~~~~~N~~L~-g~~~I~~iK~~l 113 (338)
.+-++..+.+.+ .+...+|.+|||+||||.+ +||||||+++ .|+++++|.||+ ++++|+.||+++
T Consensus 17 ~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~ 89 (251)
T PLN02879 17 VQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF 89 (251)
T ss_pred HHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc
Confidence 344577777766 4579999999999999964 8999999874 699999999999 999999999998
Q ss_pred hhcCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchhhhhcCCCCCCCCHHHHHHHHHhCCCCccCcEEe
Q 019629 114 ESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVL 193 (338)
Q Consensus 114 e~~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~~a~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaL 193 (338)
++|||||||+||||+||+.+ || |.|+|++||+|+.++.+ +.+||.|+.++++|++.|+++|||++|||||
T Consensus 90 -----~~VScADilalAa~~AV~~~-GG-P~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVAL 159 (251)
T PLN02879 90 -----PILSYADFYQLAGVVAVEIT-GG-PEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVAL 159 (251)
T ss_pred -----CCcCHHHHHHHHHHHHHHhc-CC-CccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeee
Confidence 48999999999999999999 99 99999999999999865 4689999999999999999999999999999
Q ss_pred eccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchHHHHHHhhc--ccC-
Q 019629 194 SGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIEN--KGL- 270 (338)
Q Consensus 194 sGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~--~gl- 270 (338)
|||||||++||. | ++|.| .+| .||.+|||+||++|+.+ +|+
T Consensus 160 sGaHTiG~ah~~----r-~g~~g------------------------------~~d-~tp~~FDN~Yy~~ll~~~~~gll 203 (251)
T PLN02879 160 SGGHTLGRCHKE----R-SGFEG------------------------------AWT-PNPLIFDNSYFKEILSGEKEGLL 203 (251)
T ss_pred eccccccccccc----c-ccCCC------------------------------CCC-CCccceeHHHHHHHHcCCcCCCc
Confidence 999999999994 3 33322 122 58999999999999999 888
Q ss_pred -CccchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHhhcCCCC
Q 019629 271 -FQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRMGAMNVL 313 (338)
Q Consensus 271 -L~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~ 313 (338)
|+||++|+.|++|+++|++||. |++||++|++||+||++||+.
T Consensus 204 ~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 204 QLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred cchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 6799999999999999999999 999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.8e-58 Score=432.54 Aligned_cols=223 Identities=30% Similarity=0.439 Sum_probs=204.3
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhcccccCC--------CCCceEeecCCCCCcccccCCCCCCC-chhHHHHHHHHHhh
Q 019629 44 IVRSITWKNAASNPDLPAKLIRMHFHDCFVR--------GCDASVLINSTAGNKAERDAVPNLSL-GGFEVINEIKSELE 114 (338)
Q Consensus 44 iV~~~v~~~~~~~~~~aa~lLRL~FHDcfv~--------GCDgSill~~~~~~~~E~~~~~N~~L-~g~~~I~~iK~~le 114 (338)
.|++.|++.+.+++++++++|||+||||++. ||||||+++ +|+++++|.+| +++++|+.||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 4889999999999999999999999999996 999999998 39999999986 79999999999999
Q ss_pred hcCCCCCcHHHHHHhhhhhhhhccc-CCCceeEEeCCCCCCCCCc--hhhhhcCCCCCCCCHHHHHHHHHhCCCCccCcE
Q 019629 115 SRCPGIVSCADIVALATRDSVSFQF-QKPDLWEVLTGRRDGSVSI--AAEADLLLPSPFANFSELKKNFNDKGLTVKDLV 191 (338)
Q Consensus 115 ~~cp~~VScADilalAar~av~~~~-GG~P~~~v~~GR~D~~~s~--~~~a~~~lP~p~~~~~~l~~~F~~~Gls~~dlV 191 (338)
. |++|||||||++|+++||+.++ || |.|+|++||+|+.++. ...+..++|.|+.+++++++.|+++||+++|||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~gg-p~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~V 152 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGG-PLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELV 152 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCC-CeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHH
Confidence 8 8999999999999999999986 77 9999999999999764 233456788888899999999999999999999
Q ss_pred Eee-ccccc-cccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchHHHHHHhhcc-
Q 019629 192 VLS-GGHTI-GVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENK- 268 (338)
Q Consensus 192 aLs-GaHti-G~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~- 268 (338)
||+ ||||+ |++||..|..|+ | .+|+.||.+|||+||++++.++
T Consensus 153 AL~~GaHti~G~~~~~~~~~~~------------------------~----------~~~~~tp~~fDN~yy~~l~~~~~ 198 (255)
T cd00314 153 ALSAGAHTLGGKNHGDLLNYEG------------------------S----------GLWTSTPFTFDNAYFKNLLDMNW 198 (255)
T ss_pred hhccCCeeccCcccCCCCCccc------------------------C----------CCCCCCCCccchHHHHHHhcCCc
Confidence 999 99999 999998877664 2 1245799999999999999988
Q ss_pred ---------------cCCccchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHhhc
Q 019629 269 ---------------GLFQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRMGA 309 (338)
Q Consensus 269 ---------------glL~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~ 309 (338)
++|+||++|+.|++|+.+|++||. +++|+++|++||+||++
T Consensus 199 ~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 199 EWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred ccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999 99999999999999974
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=8.4e-55 Score=426.52 Aligned_cols=257 Identities=19% Similarity=0.230 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHhcC--------CCccchhhhhhcccccC-------CCCC-ceEeecCCCCCcccccCCCCCCCc-hhHH
Q 019629 43 DIVRSITWKNAASN--------PDLPAKLIRMHFHDCFV-------RGCD-ASVLINSTAGNKAERDAVPNLSLG-GFEV 105 (338)
Q Consensus 43 ~iV~~~v~~~~~~~--------~~~aa~lLRL~FHDcfv-------~GCD-gSill~~~~~~~~E~~~~~N~~L~-g~~~ 105 (338)
+.|++.+++.+... ...+|.+|||+|||+.+ +|++ |+|.++ +|++++.|.+|. ++.+
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL~~a~~~ 118 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNLDKARRL 118 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhHHHHHHH
Confidence 78899999888754 37999999999999985 7997 899887 699999999997 8999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchh-------------------------
Q 019629 106 INEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAA------------------------- 160 (338)
Q Consensus 106 I~~iK~~le~~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~------------------------- 160 (338)
++.||+++. ..||+||+|+||+..||+.+ || |.|++.+||.|...+...
T Consensus 119 L~pik~k~~----~~iS~ADL~~LaG~~AiE~~-Gg-p~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl 192 (409)
T cd00649 119 LWPIKQKYG----NKISWADLMILAGNVALESM-GF-KTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPL 192 (409)
T ss_pred HHHHHHHcC----CCccHHHHHHHHHHHHHHHc-CC-CcccccCCCCccCCCccccccCcchhcccccccccchhhccch
Confidence 999999874 47999999999999999999 99 999999999999754320
Q ss_pred ------------hhhcCCCCCCCCHHHHHHHHHhCCCCccCcEEe-eccccccccccccccccccccCCCCCCCCCCCHH
Q 019629 161 ------------EADLLLPSPFANFSELKKNFNDKGLTVKDLVVL-SGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPR 227 (338)
Q Consensus 161 ------------~a~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaL-sGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~ 227 (338)
+....||.|..++.+|++.|++||||++||||| +||||||++||.+|.+|| ++||.+++.
T Consensus 193 ~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl-------g~dP~~~~~ 265 (409)
T cd00649 193 AAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHV-------GPEPEAAPI 265 (409)
T ss_pred hhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccC-------CCCCCcCHH
Confidence 112269999999999999999999999999999 599999999999999998 269999999
Q ss_pred HHHHHH--hcCCCCCC-CCCcccCC---CCCCcccchHHHHHHhh-----------------------------------
Q 019629 228 YAAFLK--TKCKSLAD-TTTTAELD---PGSFRKFDSHYYDILIE----------------------------------- 266 (338)
Q Consensus 228 ~~~~L~--~~Cp~~~~-~~~~~~lD---~~tp~~FDN~Yy~~l~~----------------------------------- 266 (338)
|++.|+ +.||...+ +..++.+| +.||.+|||+||++|+.
T Consensus 266 ~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~ 345 (409)
T cd00649 266 EQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKK 345 (409)
T ss_pred HHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccc
Confidence 999995 89996433 33456788 47999999999999998
Q ss_pred -cccCCccchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 019629 267 -NKGLFQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRM--GAMNVLTGTQG 318 (338)
Q Consensus 267 -~~glL~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km--~~lgv~tg~~G 318 (338)
+++||+||++|+.|++++++|++||. +++||++|++||+|| ..|||++--.|
T Consensus 346 ~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 346 HAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 56999999999999999999999999 999999999999999 69999886554
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=6.4e-52 Score=429.11 Aligned_cols=252 Identities=20% Similarity=0.220 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHhcC--------CCccchhhhhhcccccC-------CCC-CceEeecCCCCCcccccCCCCCCCc-hhHH
Q 019629 43 DIVRSITWKNAASN--------PDLPAKLIRMHFHDCFV-------RGC-DASVLINSTAGNKAERDAVPNLSLG-GFEV 105 (338)
Q Consensus 43 ~iV~~~v~~~~~~~--------~~~aa~lLRL~FHDcfv-------~GC-DgSill~~~~~~~~E~~~~~N~~L~-g~~~ 105 (338)
+.|++.+++.+... ...+|.+|||+||++.+ +|| .|+|.++ +|++++.|.+|. ++.+
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~N~~Ldka~~l 128 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPDNVNLDKARRL 128 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchhhhhHHHHHHH
Confidence 56899999988764 37999999999999986 788 5899887 689999999996 8899
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCc---------------------------
Q 019629 106 INEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSI--------------------------- 158 (338)
Q Consensus 106 I~~iK~~le~~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~--------------------------- 158 (338)
++.||++ ||++|||||||+||+++||+.+ || |.|+|.+||+|+..+.
T Consensus 129 L~pIk~k----yp~~VS~ADLivLAG~vAVE~~-Gg-p~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a 202 (716)
T TIGR00198 129 LWPIKKK----YGNKLSWADLIILAGTVAYESM-GL-KVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLA 202 (716)
T ss_pred HHHHHHH----CCCceeHHHHHHHHHHHHHHHh-CC-CccCCCCCCCCCCCcccccccccccchhhccccccccccccch
Confidence 9999875 7889999999999999999999 99 9999999999994332
Q ss_pred ----------hhhhhcCCCCCCCCHHHHHHHHHhCCCCccCcEEee-ccccccccccccccccccccCCCCCCCCCCCHH
Q 019629 159 ----------AAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLS-GGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPR 227 (338)
Q Consensus 159 ----------~~~a~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~ 227 (338)
+.. ...+|.|..++.+|++.|++||||++|||||+ ||||||++||.+|.+|| ++||++++.
T Consensus 203 ~~~~Gliyvnpeg-~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~~ 274 (716)
T TIGR00198 203 ATEMGLIYVNPEG-PDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAPI 274 (716)
T ss_pred hhhccccccCccc-ccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCCCcCHH
Confidence 111 22699999999999999999999999999995 99999999999999998 379999999
Q ss_pred HHHHHHhcCCCCC---CCCCcccCC---CCCCcccchHHHHHHhhc----------------------------------
Q 019629 228 YAAFLKTKCKSLA---DTTTTAELD---PGSFRKFDSHYYDILIEN---------------------------------- 267 (338)
Q Consensus 228 ~~~~L~~~Cp~~~---~~~~~~~lD---~~tp~~FDN~Yy~~l~~~---------------------------------- 267 (338)
|++.|+..||... .+..++.+| +.||.+|||+||+||+..
T Consensus 275 ~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~ 354 (716)
T TIGR00198 275 EEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHN 354 (716)
T ss_pred HHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccc
Confidence 9999999998632 222356777 579999999999999974
Q ss_pred ccCCccchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHhh--cCCCCC
Q 019629 268 KGLFQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRMG--AMNVLT 314 (338)
Q Consensus 268 ~glL~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~--~lgv~t 314 (338)
.++|+||++|..|++++++|++||. ++.|+++|++||+||+ .+|++.
T Consensus 355 ~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 355 PIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred cCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 6899999999999999999999999 9999999999999998 566554
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=7.9e-51 Score=380.10 Aligned_cols=219 Identities=23% Similarity=0.281 Sum_probs=183.2
Q ss_pred HHHHHHHHHhcCCCccchhhhhhccccc-------CCCCCceEeecCCCCCccccc-CCCCCCCchhHHHHHHHHHhhhc
Q 019629 45 VRSITWKNAASNPDLPAKLIRMHFHDCF-------VRGCDASVLINSTAGNKAERD-AVPNLSLGGFEVINEIKSELESR 116 (338)
Q Consensus 45 V~~~v~~~~~~~~~~aa~lLRL~FHDcf-------v~GCDgSill~~~~~~~~E~~-~~~N~~L~g~~~I~~iK~~le~~ 116 (338)
|...-..+...++++++.||||+||||| ++||||||+++.. .+|+. .+.|.+|++|+.|+.+
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~------- 96 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSP------- 96 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeeccC-------
Confidence 3334444566889999999999999999 8999999999843 46776 5567788888887554
Q ss_pred CCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchhhhhcCCCCCCCCHHHHHHHHHhCCCCccCcEEeec-
Q 019629 117 CPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSG- 195 (338)
Q Consensus 117 cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~~a~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsG- 195 (338)
+||||||||||||+||+++ || |.|+|++||+|++++.+. .||.|+.++++|++.|+++||+++|||+|+|
T Consensus 97 ---~VScADiialAa~~AV~~~-GG-P~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsgg 167 (264)
T cd08201 97 ---RSSMADLIAMGVVTSVASC-GG-PVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVAC 167 (264)
T ss_pred ---ccCHHHHHHHHHHHHHHHc-CC-CeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecC
Confidence 6999999999999999999 99 999999999999998764 4999999999999999999999999999995
Q ss_pred cccccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCcccchHHHHHHhhccc------
Q 019629 196 GHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKG------ 269 (338)
Q Consensus 196 aHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~g------ 269 (338)
|||||++||..|.++.- |. . ..+...++| .||.+|||+||.+++.+..
T Consensus 168 aHTiG~ahc~~f~~~~~---------~g---------------~-~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~ 221 (264)
T cd08201 168 GHTLGGVHSEDFPEIVP---------PG---------------S-VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVV 221 (264)
T ss_pred CeeeeecccccchhhcC---------Cc---------------c-ccCCCCCCC-CCccccchHHHHHHhcCCCCCceee
Confidence 99999999998877641 10 0 001134566 6999999999999998742
Q ss_pred ----CCccchhccCCcchHHHHHHhhchHHHHHHHHHHHHHhhc
Q 019629 270 ----LFQSDAALLTNKGARNIVMELRNQDKFFTEFAQSMKRMGA 309 (338)
Q Consensus 270 ----lL~SD~~L~~d~~t~~~V~~yA~~~~F~~~Fa~Am~Km~~ 309 (338)
.++||..+++.+.... ++..|++..|.+.++..+.||.+
T Consensus 222 ~~~~~~~sd~r~f~~d~n~t-~~~l~~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 222 GPNNTTNSDLRIFSSDGNVT-MNELASPDTFQKTCADILQRMID 264 (264)
T ss_pred cCCCCccchhhheecCccHH-HHHhcChHHHHHHHHHHHHHHhC
Confidence 4689999998765544 78888988999999999999974
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.9e-48 Score=401.34 Aligned_cols=254 Identities=19% Similarity=0.230 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHhcC--------CCccchhhhhhcccccC-------CCCC-ceEeecCCCCCcccccCCCCCCCc-hhHH
Q 019629 43 DIVRSITWKNAASN--------PDLPAKLIRMHFHDCFV-------RGCD-ASVLINSTAGNKAERDAVPNLSLG-GFEV 105 (338)
Q Consensus 43 ~iV~~~v~~~~~~~--------~~~aa~lLRL~FHDcfv-------~GCD-gSill~~~~~~~~E~~~~~N~~L~-g~~~ 105 (338)
+.|++.+.+.+... ...+|.+|||+||++.+ +||+ |+|.+. +|.+++.|.+|. ++.+
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------pe~~w~~N~gL~ka~~~ 130 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------PLNSWPDNVNLDKARRL 130 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------ccccchhhhhHHHHHHH
Confidence 57899999888754 37999999999999986 7996 888886 689999999997 8999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHhhhhhhhhcccCCCceeEEeCCCCCCCCCchh-------------------------
Q 019629 106 INEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAA------------------------- 160 (338)
Q Consensus 106 I~~iK~~le~~cp~~VScADilalAar~av~~~~GG~P~~~v~~GR~D~~~s~~~------------------------- 160 (338)
++.||+++. ..||+||+|+||+..||+.+ || |.|++.+||.|...+...
T Consensus 131 L~pik~ky~----~~iS~ADLi~LaG~vAiE~~-Gg-p~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~p 204 (726)
T PRK15061 131 LWPIKQKYG----NKISWADLMILAGNVALESM-GF-KTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENP 204 (726)
T ss_pred HHHHHHHhC----CCccHHHHHHHHHHHHHHHc-CC-CccCcCCCCCCCcCCccccccCccccccccccccccccccccc
Confidence 999999884 57999999999999999999 99 999999999998654321
Q ss_pred -------------hhhcCCCCCCCCHHHHHHHHHhCCCCccCcEEee-ccccccccccccccccccccCCCCCCCCCCCH
Q 019629 161 -------------EADLLLPSPFANFSELKKNFNDKGLTVKDLVVLS-GGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDP 226 (338)
Q Consensus 161 -------------~a~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~ 226 (338)
+-...+|+|..++.+|++.|++||||++|||||+ ||||||++||..|.+|| ++||.+++
T Consensus 205 l~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl-------gpdP~~a~ 277 (726)
T PRK15061 205 LAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV-------GPEPEAAP 277 (726)
T ss_pred hhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------CCCCCcCH
Confidence 0012489999999999999999999999999995 99999999999999998 37999999
Q ss_pred HHHHHHH--hcCCCCC-CCCCcccCC---CCCCcccchHHHHHHhhc---------------------------------
Q 019629 227 RYAAFLK--TKCKSLA-DTTTTAELD---PGSFRKFDSHYYDILIEN--------------------------------- 267 (338)
Q Consensus 227 ~~~~~L~--~~Cp~~~-~~~~~~~lD---~~tp~~FDN~Yy~~l~~~--------------------------------- 267 (338)
.+++.|. +.||.+. .+..+..+| ..||.+|||+||++|+.+
T Consensus 278 ~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~ 357 (726)
T PRK15061 278 IEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSK 357 (726)
T ss_pred HHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCccccccc
Confidence 9999985 8999643 233456788 579999999999999984
Q ss_pred ---ccCCccchhccCCcchHHHHHHhhc-hHHHHHHHHHHHHHh--hcCCCCCC
Q 019629 268 ---KGLFQSDAALLTNKGARNIVMELRN-QDKFFTEFAQSMKRM--GAMNVLTG 315 (338)
Q Consensus 268 ---~glL~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km--~~lgv~tg 315 (338)
.+||+||++|..||+++++|++||. +++|+++|++||+|| ..+|+++-
T Consensus 358 ~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 358 KHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred ccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 5899999999999999999999999 999999999999999 44776654
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.1e-36 Score=288.18 Aligned_cols=221 Identities=17% Similarity=0.198 Sum_probs=178.0
Q ss_pred HHHHHHHHhcCCCccchhhhhhcccccC-------CCCCce-EeecCCCCCcccccCCCCCC--Cc-hhHHHHHHHHHhh
Q 019629 46 RSITWKNAASNPDLPAKLIRMHFHDCFV-------RGCDAS-VLINSTAGNKAERDAVPNLS--LG-GFEVINEIKSELE 114 (338)
Q Consensus 46 ~~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GCDgS-ill~~~~~~~~E~~~~~N~~--L~-g~~~I~~iK~~le 114 (338)
.+.+++.+....-.++.++||+||++.+ +|++|+ |.|. +|++++.|.+ |. .+.+++.||+++.
T Consensus 16 i~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L~~~~~~Le~ik~~~~ 89 (297)
T cd08200 16 IAALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEELAKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHHHHHHHHHHHHHHHhc
Confidence 4567777777778999999999999985 899999 7776 6999999998 86 8999999999985
Q ss_pred hc-CC-CCCcHHHHHHhhhhhhhhcccCC----CceeEEeCCCCCCCCCchhhh--hcCCCCCC------------CCHH
Q 019629 115 SR-CP-GIVSCADIVALATRDSVSFQFQK----PDLWEVLTGRRDGSVSIAAEA--DLLLPSPF------------ANFS 174 (338)
Q Consensus 115 ~~-cp-~~VScADilalAar~av~~~~GG----~P~~~v~~GR~D~~~s~~~~a--~~~lP~p~------------~~~~ 174 (338)
.. -+ ..||.||+|+||+..|||.+ || .|.|++.+||.|...+..... ...+|.+. ...+
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~a-gg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~ 168 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKA-AKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEE 168 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHH-HhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHH
Confidence 32 12 26999999999999999999 65 278999999999987643210 11345332 2347
Q ss_pred HHHHHHHhCCCCccCcEEeeccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 019629 175 ELKKNFNDKGLTVKDLVVLSGGH-TIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSF 253 (338)
Q Consensus 175 ~l~~~F~~~Gls~~dlVaLsGaH-tiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp 253 (338)
.|++.|.++|||++|||||+||| ++|..|..++ .| |++ .+|
T Consensus 169 ~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~-------~G--------------------~wT-----------~~p 210 (297)
T cd08200 169 MLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG--------------------VFT-----------DRP 210 (297)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC--------------------CCc-----------CCC
Confidence 89999999999999999999997 7998774221 11 222 589
Q ss_pred cccchHHHHHHhhcc--------------------c-----CCccchhccCCcchHHHHHHhhc---hHHHHHHHHHHHH
Q 019629 254 RKFDSHYYDILIENK--------------------G-----LFQSDAALLTNKGARNIVMELRN---QDKFFTEFAQSMK 305 (338)
Q Consensus 254 ~~FDN~Yy~~l~~~~--------------------g-----lL~SD~~L~~d~~t~~~V~~yA~---~~~F~~~Fa~Am~ 305 (338)
.+|||.||++|+... | .+.+|..|.+|++.|++|+.||. +++||+||++||.
T Consensus 211 ~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~ 290 (297)
T cd08200 211 GVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWT 290 (297)
T ss_pred CccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 999999999999520 1 26789999999999999999997 8899999999999
Q ss_pred HhhcCC
Q 019629 306 RMGAMN 311 (338)
Q Consensus 306 Km~~lg 311 (338)
||+++.
T Consensus 291 Klmeld 296 (297)
T cd08200 291 KVMNLD 296 (297)
T ss_pred HHHhcC
Confidence 999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.98 E-value=3.4e-32 Score=282.51 Aligned_cols=220 Identities=17% Similarity=0.240 Sum_probs=174.6
Q ss_pred HHHHHHHH---HHhcCCCccchhhhhhcccccC-------CCCCce-EeecCCCCCcccccCCCC--CCCc-hhHHHHHH
Q 019629 44 IVRSITWK---NAASNPDLPAKLIRMHFHDCFV-------RGCDAS-VLINSTAGNKAERDAVPN--LSLG-GFEVINEI 109 (338)
Q Consensus 44 iV~~~v~~---~~~~~~~~aa~lLRL~FHDcfv-------~GCDgS-ill~~~~~~~~E~~~~~N--~~L~-g~~~I~~i 109 (338)
+|++.|.. .+....-..+.|+|++||++.+ +|++|+ |.|. +|++++.| .+|. .+++++.|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHH
Confidence 34555544 3445567789999999999985 899999 7776 69999999 7886 89999999
Q ss_pred HHHhhhcCCCCCcHHHHHHhhhhhhhhccc--CCCc--eeEEeCCCCCCCCCchhhhhcCCC---C------------CC
Q 019629 110 KSELESRCPGIVSCADIVALATRDSVSFQF--QKPD--LWEVLTGRRDGSVSIAAEADLLLP---S------------PF 170 (338)
Q Consensus 110 K~~le~~cp~~VScADilalAar~av~~~~--GG~P--~~~v~~GR~D~~~s~~~~a~~~lP---~------------p~ 170 (338)
|+++.. ..||.||+|+||+..|||.+. || | .+++.+||.|...... +++...| . ..
T Consensus 503 k~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG-~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~ 577 (716)
T TIGR00198 503 QAEFAK---GPVSLADLIVLGGGAAVEKAALDAG-ISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAV 577 (716)
T ss_pred HHHcCC---CcccHHHHHHHHHHHHHHHHHHhCC-CCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccC
Confidence 999853 279999999999999999984 67 8 5788999999987642 2222222 1 12
Q ss_pred CCHHHHHHHHHhCCCCccCcEEeecc-ccccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCC
Q 019629 171 ANFSELKKNFNDKGLTVKDLVVLSGG-HTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELD 249 (338)
Q Consensus 171 ~~~~~l~~~F~~~Gls~~dlVaLsGa-HtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD 249 (338)
.....|++.|.++|||+.|||||+|| |++|+.|..++ .| |+
T Consensus 578 ~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------~G--------------------~~----------- 619 (716)
T TIGR00198 578 TPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------HG--------------------VF----------- 619 (716)
T ss_pred CHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCC-------CC--------------------CC-----------
Confidence 23567899999999999999999999 59999885321 11 11
Q ss_pred CCCCcccchHHHHHHhhcc--------------------c---C--CccchhccCCcchHHHHHHhhc-h--HHHHHHHH
Q 019629 250 PGSFRKFDSHYYDILIENK--------------------G---L--FQSDAALLTNKGARNIVMELRN-Q--DKFFTEFA 301 (338)
Q Consensus 250 ~~tp~~FDN~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~-~--~~F~~~Fa 301 (338)
..+|.+|||.||+||+... | + ..+|..|.+|++.|++|+.||. + ++||+||+
T Consensus 620 T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~ 699 (716)
T TIGR00198 620 TDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFV 699 (716)
T ss_pred cCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHH
Confidence 1579999999999999721 1 2 2679999999999999999999 5 89999999
Q ss_pred HHHHHhhcCCC
Q 019629 302 QSMKRMGAMNV 312 (338)
Q Consensus 302 ~Am~Km~~lgv 312 (338)
+||.|+++++-
T Consensus 700 ~Aw~Klm~ldr 710 (716)
T TIGR00198 700 AAWTKVMNLDR 710 (716)
T ss_pred HHHHHHHhCCC
Confidence 99999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.97 E-value=9.8e-32 Score=277.80 Aligned_cols=220 Identities=16% Similarity=0.197 Sum_probs=177.8
Q ss_pred HHHHHHHhcCCCccchhhhhhcccccC-------CCCCce-EeecCCCCCcccccCCCCC--CCc-hhHHHHHHHHHhhh
Q 019629 47 SITWKNAASNPDLPAKLIRMHFHDCFV-------RGCDAS-VLINSTAGNKAERDAVPNL--SLG-GFEVINEIKSELES 115 (338)
Q Consensus 47 ~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GCDgS-ill~~~~~~~~E~~~~~N~--~L~-g~~~I~~iK~~le~ 115 (338)
..+++.+....-..+.|+|++||++.+ +|++|+ |.|. +|++++.|. +|. .+++++.||++.+.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 566666777777899999999999985 899999 8886 699999998 886 89999999999864
Q ss_pred cC--CCCCcHHHHHHhhhhhhhhcccC---C-CceeEEeCCCCCCCCCchhhhhc---CCCCCC------------CCHH
Q 019629 116 RC--PGIVSCADIVALATRDSVSFQFQ---K-PDLWEVLTGRRDGSVSIAAEADL---LLPSPF------------ANFS 174 (338)
Q Consensus 116 ~c--p~~VScADilalAar~av~~~~G---G-~P~~~v~~GR~D~~~s~~~~a~~---~lP~p~------------~~~~ 174 (338)
.- ...||.||+|+||+..|||.+ + | .|.|++.+||.|.+.... +++. .+|.+. ....
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~a-a~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~ 593 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQA-AKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEE 593 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHH-HHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHH
Confidence 32 236999999999999999998 4 3 288999999999987533 2221 456532 1347
Q ss_pred HHHHHHHhCCCCccCcEEeeccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 019629 175 ELKKNFNDKGLTVKDLVVLSGGH-TIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSF 253 (338)
Q Consensus 175 ~l~~~F~~~Gls~~dlVaLsGaH-tiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp 253 (338)
.|++.|.++|||+.|||||+||| ++|..|-.++ .| |+ ..+|
T Consensus 594 ~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G--------------------~~-----------T~~p 635 (726)
T PRK15061 594 LLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG--------------------VF-----------TDRP 635 (726)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC--------------------CC-----------cCCC
Confidence 89999999999999999999997 7888773221 11 11 1579
Q ss_pred cccchHHHHHHhhcc--------------------c---C--CccchhccCCcchHHHHHHhhc---hHHHHHHHHHHHH
Q 019629 254 RKFDSHYYDILIENK--------------------G---L--FQSDAALLTNKGARNIVMELRN---QDKFFTEFAQSMK 305 (338)
Q Consensus 254 ~~FDN~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~---~~~F~~~Fa~Am~ 305 (338)
.+|||.||+||+... | + +.+|..|.+|++.|++|+.||. +++||+||++||.
T Consensus 636 ~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~ 715 (726)
T PRK15061 636 GVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWT 715 (726)
T ss_pred CccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 999999999999521 1 1 4789999999999999999997 8999999999999
Q ss_pred HhhcCCC
Q 019629 306 RMGAMNV 312 (338)
Q Consensus 306 Km~~lgv 312 (338)
|+++++-
T Consensus 716 Kvmeldr 722 (726)
T PRK15061 716 KVMNLDR 722 (726)
T ss_pred HHHhCCC
Confidence 9999873
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.3e-28 Score=239.32 Aligned_cols=234 Identities=19% Similarity=0.226 Sum_probs=184.9
Q ss_pred CccchhhhhhcccccC-------CCC-CceEeecCCCCCcccccCCCCCCCc-hhHHHHHHHHHhhhcCCCCCcHHHHHH
Q 019629 58 DLPAKLIRMHFHDCFV-------RGC-DASVLINSTAGNKAERDAVPNLSLG-GFEVINEIKSELESRCPGIVSCADIVA 128 (338)
Q Consensus 58 ~~aa~lLRL~FHDcfv-------~GC-DgSill~~~~~~~~E~~~~~N~~L~-g~~~I~~iK~~le~~cp~~VScADila 128 (338)
...|.+|||+||-+.+ +|. .|... +.++.++|.|.+|+ ++.++..||+++. ..||+||+|.
T Consensus 93 hYGplfIRmAWHsAGTYRi~DGRGGa~~G~qR------FaPlnSWPDN~nLDKarRLLWPIKkKYG----~kiSWaDL~i 162 (730)
T COG0376 93 HYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQR------FAPLNSWPDNANLDKARRLLWPIKKKYG----RKISWADLII 162 (730)
T ss_pred ccccceeeeeecccCceecccCCCCCCCCcee------cccccCCCcccchHHHHHHhhhHhHhhc----ccccHhHhhh
Confidence 5889999999999975 232 22222 34677899999997 9999999999884 6899999999
Q ss_pred hhhhhhhhcccCCCceeEEeCCCCCCCCCch--------------------------------------hhhhcCCCCCC
Q 019629 129 LATRDSVSFQFQKPDLWEVLTGRRDGSVSIA--------------------------------------AEADLLLPSPF 170 (338)
Q Consensus 129 lAar~av~~~~GG~P~~~v~~GR~D~~~s~~--------------------------------------~~a~~~lP~p~ 170 (338)
||+..|++.+ |+ +.+.+..||.|-..+.. .+ ++..|+|.
T Consensus 163 LaGnvAlEsM-Gf-ktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEG-png~PDpl 239 (730)
T COG0376 163 LAGNVALESM-GF-KTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEG-PNGNPDPL 239 (730)
T ss_pred hhchhhhhhc-CC-ccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCC-CCCCCChh
Confidence 9999999999 99 99999999999876654 12 34588999
Q ss_pred CCHHHHHHHHHhCCCCccCcEEee-ccccccccccccccccccccCCCCCCCCCCCHHHHHHH--HhcCCCCCCC-CCcc
Q 019629 171 ANFSELKKNFNDKGLTVKDLVVLS-GGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFL--KTKCKSLADT-TTTA 246 (338)
Q Consensus 171 ~~~~~l~~~F~~~Gls~~dlVaLs-GaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L--~~~Cp~~~~~-~~~~ 246 (338)
.+..++++.|++|++|++|.|||+ ||||+|++|...-.+-+ +++|.-.+--.+.| .+.|-.+.+. ..+.
T Consensus 240 ~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGlGW~~~~g~G~G~dtits 312 (730)
T COG0376 240 AAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGLGWANTYGSGKGPDTITS 312 (730)
T ss_pred hhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhhccccccccCCCcCcccccc
Confidence 999999999999999999999997 69999999976532222 45665544444444 3344332222 2222
Q ss_pred cC---CCCCCcccchHHHHHHhhcc-----------------------------------cCCccchhccCCcchHHHHH
Q 019629 247 EL---DPGSFRKFDSHYYDILIENK-----------------------------------GLFQSDAALLTNKGARNIVM 288 (338)
Q Consensus 247 ~l---D~~tp~~FDN~Yy~~l~~~~-----------------------------------glL~SD~~L~~d~~t~~~V~ 288 (338)
.+ ...||++|||+||.+|..-. .||.+|.+|.-||..++|.+
T Consensus 313 GlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~ 392 (730)
T COG0376 313 GLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISR 392 (730)
T ss_pred cccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHH
Confidence 22 34689999999999998521 37999999999999999999
Q ss_pred Hhhc-hHHHHHHHHHHHHHhhcCC
Q 019629 289 ELRN-QDKFFTEFAQSMKRMGAMN 311 (338)
Q Consensus 289 ~yA~-~~~F~~~Fa~Am~Km~~lg 311 (338)
+|.+ ++.|.+.|+.||.||..-.
T Consensus 393 rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 393 RFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred HHHhCHHHHHHHHHHHHHHHhhcc
Confidence 9999 9999999999999997643
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.30 E-value=2.4e-11 Score=122.27 Aligned_cols=214 Identities=17% Similarity=0.227 Sum_probs=150.1
Q ss_pred HHHHHHhcCCCccchhhhhhcccccC-------CCCCce-EeecCCCCCcccccCCCCC--CCc-hhHHHHHHHHHhhhc
Q 019629 48 ITWKNAASNPDLPAKLIRMHFHDCFV-------RGCDAS-VLINSTAGNKAERDAVPNL--SLG-GFEVINEIKSELESR 116 (338)
Q Consensus 48 ~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GCDgS-ill~~~~~~~~E~~~~~N~--~L~-g~~~I~~iK~~le~~ 116 (338)
.++..+....-....|+-.+|-.+-+ +|.+|. |.|. +.|+++.|. -|. -+.+++.|.+..+
T Consensus 453 ~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn-- 524 (730)
T COG0376 453 ALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN-- 524 (730)
T ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 45555555556677788888877654 677765 4454 578999996 343 6889999988887
Q ss_pred CCCCCcHHHHHHhhhhhhhhccc--CCCce--eEEeCCCCCCCCCchhhhhc-CC--C------------CCCCCHHHHH
Q 019629 117 CPGIVSCADIVALATRDSVSFQF--QKPDL--WEVLTGRRDGSVSIAAEADL-LL--P------------SPFANFSELK 177 (338)
Q Consensus 117 cp~~VScADilalAar~av~~~~--GG~P~--~~v~~GR~D~~~s~~~~a~~-~l--P------------~p~~~~~~l~ 177 (338)
..||.||+|+|++..+|+.+. +| -. +|+.+||.|+...-.. ++. .. | .....-.-|+
T Consensus 525 --kkvSlADlIVL~G~a~ie~AAk~aG-~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 --KKVSLADLIVLGGNAAVEKAAKAAG-FSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred --CccchhHheeecchHHHHHHHHhcC-ceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 379999999999999999764 55 55 4567999999765332 111 11 1 1112234567
Q ss_pred HHHHhCCCCccCcEEeeccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCccc
Q 019629 178 KNFNDKGLTVKDLVVLSGGH-TIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKF 256 (338)
Q Consensus 178 ~~F~~~Gls~~dlVaLsGaH-tiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~F 256 (338)
+.-+-.+||.-||++|.|+- .+|.- |.| ....+.- ..|.++
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~n-----------~g~-------------------------s~~GVfT--~~pg~L 642 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGAN-----------YGG-------------------------SKHGVFT--DRPGVL 642 (730)
T ss_pred HHHHHhccCCccceEEEcceEeeccC-----------CCC-------------------------Cccceec--cCcccc
Confidence 88888999999999999875 23321 111 1111222 257778
Q ss_pred chHHHHHHhhc--------------------ccC-----CccchhccCCcchHHHHHHhhc---hHHHHHHHHHHHHHhh
Q 019629 257 DSHYYDILIEN--------------------KGL-----FQSDAALLTNKGARNIVMELRN---QDKFFTEFAQSMKRMG 308 (338)
Q Consensus 257 DN~Yy~~l~~~--------------------~gl-----L~SD~~L~~d~~t~~~V~~yA~---~~~F~~~Fa~Am~Km~ 308 (338)
.|.||.||+.- .|- -..|..+-+++..|.+.+-||. ++.|.+||++||.|..
T Consensus 643 tndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVM 722 (730)
T COG0376 643 TNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVM 722 (730)
T ss_pred cchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 88888888752 122 2468888889999999999996 9999999999999999
Q ss_pred cCC
Q 019629 309 AMN 311 (338)
Q Consensus 309 ~lg 311 (338)
++.
T Consensus 723 n~D 725 (730)
T COG0376 723 NLD 725 (730)
T ss_pred ccc
Confidence 875
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=69.32 E-value=4.9 Score=31.68 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 019629 295 KFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 328 (338)
Q Consensus 295 ~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~vn 328 (338)
....+|..||.||+.|| .+-.-.-+||.|-
T Consensus 2 ~m~~~F~~am~KlavLG----~d~~~LiDCSdVI 31 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLG----HDRSDLIDCSDVI 31 (80)
T ss_dssp HHHHHHHHHHHHHCTTT----S-GGGSEE-GGGS
T ss_pred hHHHHHHHHHHHHHHhc----CChhhcccchhhc
Confidence 35688999999999994 4446677999887
No 20
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.35 E-value=26 Score=26.99 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhccccc
Q 019629 43 DIVRSITWKNAASNPDLPAKLIRMHFHDCF 72 (338)
Q Consensus 43 ~iV~~~v~~~~~~~~~~aa~lLRL~FHDcf 72 (338)
-|.|+.+.+.++.+|.+-...||+.+--..
T Consensus 23 fiark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 23 FIARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 368999999999999999999999886543
No 21
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=31.99 E-value=47 Score=20.28 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=13.0
Q ss_pred ccchHHHHHHHHHHHHhhh
Q 019629 6 GAGSLLLVCLVVFGIIGVC 24 (338)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (338)
|.||++..+|.+++....+
T Consensus 3 ~~~FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 3 GSGFALIVVLFILLIIVGA 21 (24)
T ss_pred CccchhHHHHHHHHHHhcc
Confidence 5688888777777665443
No 22
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=30.66 E-value=35 Score=29.44 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcC--CCCCcCcccccChhHHHHHHHHHHHHHhcCCCccchhhhhhcccc
Q 019629 14 CLVVFGIIGVCQG--GELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDC 71 (338)
Q Consensus 14 ~~~~~~~~~~~~~--~~l~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~aa~lLRL~FHDc 71 (338)
||-++..|..+.. ......+|-++|.+. -.|.=.|-+|||=
T Consensus 117 ClSIlSMLSSs~eKqrP~Dn~~Yvk~C~~g-----------------rsPk~TrWwfHDD 159 (161)
T KOG0427|consen 117 CLSILSMLSSSKEKQRPTDNDRYVKNCKNG-----------------RSPKETRWWFHDD 159 (161)
T ss_pred HHHHHHHHccCccccCCCccchhhhhccCC-----------------CCcccceeeeccC
Confidence 3444444443322 236678999999653 3566779999983
No 23
>PRK01844 hypothetical protein; Provisional
Probab=28.18 E-value=74 Score=24.65 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhccccc
Q 019629 44 IVRSITWKNAASNPDLPAKLIRMHFHDCF 72 (338)
Q Consensus 44 iV~~~v~~~~~~~~~~aa~lLRL~FHDcf 72 (338)
+-|..+++.++++|.+-...||.-|--..
T Consensus 24 ~ark~~~k~lk~NPpine~mir~Mm~QMG 52 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQMLKMMMMQMG 52 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999998876443
No 24
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=26.43 E-value=22 Score=29.04 Aligned_cols=15 Identities=40% Similarity=1.112 Sum_probs=10.1
Q ss_pred hcccccCCCCCceEee
Q 019629 67 HFHDCFVRGCDASVLI 82 (338)
Q Consensus 67 ~FHDcfv~GCDgSill 82 (338)
.+|+|| +||.|+++.
T Consensus 4 V~HeC~-g~c~G~f~P 18 (96)
T PF08782_consen 4 VYHECF-GGCRGSFIP 18 (96)
T ss_dssp EEE-ST-T-EEEEE-G
T ss_pred eEEeec-CccceEech
Confidence 479998 899999864
No 25
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.07 E-value=71 Score=19.89 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=11.4
Q ss_pred ccchHHHHHHHHHHHHhh
Q 019629 6 GAGSLLLVCLVVFGIIGV 23 (338)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (338)
|.||++..+|.+++....
T Consensus 5 g~gf~livVLFILLIIig 22 (26)
T TIGR01732 5 GGGFALIVVLFILLVIVG 22 (26)
T ss_pred CcchHHHHHHHHHHHHhh
Confidence 667777776666655443
No 26
>PRK00523 hypothetical protein; Provisional
Probab=24.66 E-value=1e+02 Score=23.83 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhcccc
Q 019629 44 IVRSITWKNAASNPDLPAKLIRMHFHDC 71 (338)
Q Consensus 44 iV~~~v~~~~~~~~~~aa~lLRL~FHDc 71 (338)
+-|..+++.++++|.+-...||.-|--.
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QM 52 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQM 52 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHh
Confidence 4789999999999999999999887644
Done!