BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019630
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 165 VRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENA 224
V L T+ G + +++ + P + L L AS + GC FHR + +G ++
Sbjct: 9 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHR--------NIKGFMVQT- 59
Query: 225 PGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGP-----EFFISLANHN 279
G P +G F++ E RG V+ +GP +FFI+
Sbjct: 60 ----GDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQP 115
Query: 280 EWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVN 316
YTVFG V+ + + + + +LP ++ + +N
Sbjct: 116 HLDMKYTVFGKVI-DGLETLDELEKLPVNEKTYRPLN 151
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 165 VRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENA 224
V L T+ G + +++ + P + L L AS + GC FHR + +G ++
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHR--------NIKGFMVQT- 53
Query: 225 PGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGP-----EFFISLANHN 279
G P +G F++ E RG V+ +GP +FFI+
Sbjct: 54 ----GDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQP 109
Query: 280 EWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVN 316
YTVFG V+ + + + + +LP ++ + +N
Sbjct: 110 HLDMKYTVFGKVI-DGLETLDELEKLPVNEKTYRPLN 145
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 40/165 (24%)
Query: 160 KGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGN 219
KG+ V L T G + ++L AP+SV ++ + S FHR
Sbjct: 2 KGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRV------------ 49
Query: 220 HIENAPGGYGPPFALIQGSLETHSITFKE----IPLEVCSTIR--RGSVAWVGSG----- 268
PG +IQG T + K+ I E + +R RG++A +
Sbjct: 50 ----IPG------FMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSA 99
Query: 269 -PEFFISLA-----NHNEWKKVYTVFGIVLPEDMAIAERIARLPT 307
+FFI++A +H + Y VFG V+ + M +A++I+++PT
Sbjct: 100 TSQFFINVADNAFLDHGQRDFGYAVFGKVV-KGMDVADKISQVPT 143
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 40/165 (24%)
Query: 160 KGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGN 219
KG+ V L T G + ++L AP+SV ++ + S FHR
Sbjct: 2 KGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRV------------ 49
Query: 220 HIENAPGGYGPPFALIQGSLETHSITFKE----IPLEVCSTIR--RGSVAWVGSG----- 268
PG +IQG T + K+ I E + +R RG++A +
Sbjct: 50 ----IPG------FMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSA 99
Query: 269 -PEFFISLA-----NHNEWKKVYTVFGIVLPEDMAIAERIARLPT 307
+FFI++A +H + Y VFG V+ + M +A++I+++PT
Sbjct: 100 TSQFFINVADNAFLDHGQRDFGYAVFGKVV-KGMDVADKISQVPT 143
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 165 VRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHR 206
++L+T +GT+ +KL D AP + A + + H G FHR
Sbjct: 2 IKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHR 43
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 159 GKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEG 218
G G V L T G L V+L PL+ ++L + V FHR G
Sbjct: 18 GSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVK--DFIVQGG 75
Query: 219 NHIENAPGGYGPPFALIQGSLETH-SITFKEIPLEVCSTIRRGSV---------AWVGSG 268
+ GG F +ETH + F+ L + + R S + +G
Sbjct: 76 DPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNG 135
Query: 269 PEFFISLANHNEWKKVYTVFGIV 291
+FFI+LA + YT+FG V
Sbjct: 136 NQFFITLARADVLNNAYTLFGKV 158
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 20/139 (14%)
Query: 160 KGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGN 219
+G G VRL T G L+++L D P + + L + G FHR+ +
Sbjct: 17 RGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPT 76
Query: 220 HIENAPGGY-GPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGP-----EFFI 273
Y G P FK+ S RG ++ SGP +FFI
Sbjct: 77 GTGTGGESYWGKP--------------FKDEFRPNLSHTGRGILSMANSGPNSNRSQFFI 122
Query: 274 SLANHNEWKKVYTVFGIVL 292
+ + K +T+FG V+
Sbjct: 123 TFRSCAYLDKKHTIFGRVV 141
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 160 KGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHR 206
K +G +R+ T G+L+++L D AP + L L A ++ FHR
Sbjct: 4 KKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHR 50
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 24/138 (17%)
Query: 162 EGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHI 221
G V L+T G + ++L AP + ++L + FHR
Sbjct: 24 NGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRV-------------- 69
Query: 222 ENAPGGY---GPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGP-----EFFI 273
PG G P G + FK+ RRG VA +G +FF
Sbjct: 70 --VPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFF 127
Query: 274 SLANHNEWKKVYTVFGIV 291
+L +E +T+FG V
Sbjct: 128 TLGRADELNNKHTIFGKV 145
>pdb|3EMV|A Chain A, Crystal Structure Of Plasmodium Vivax Pnp With Sulphate
Length = 253
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 270 EFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVSVLEKPI 324
E + +L E KV GI L DM +I +PT+ E +S NV+V+E +
Sbjct: 134 EVYATLNQVAEELKVPVFNGISLSSDMYYPHKI--IPTRLEDYSKANVAVVEMEV 186
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 30/163 (18%)
Query: 167 LETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENA-P 225
+ T G +H KL P P +V + + G FHR +G I+ P
Sbjct: 26 IHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRI--------IKGFMIQTGDP 77
Query: 226 GGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRG-----SVAWVGS---GPEFFISLAN 277
G G + SI E E ST+R S+A GS G +FFI++
Sbjct: 78 TGTG---------MGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVP 128
Query: 278 HNEWKKVYTVFGIVLPEDMAIAERIARL---PTKQEVWSNVNV 317
+TVFG V + M + +RI+ + P + + +V++
Sbjct: 129 TPWLDNKHTVFGRVT-KGMEVVQRISNVKVNPKTDKPYEDVSI 170
>pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LCP|B Chain B, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LAN|A Chain A, Leucine Aminopeptidase Complex With L-Leucinal
pdb|1LAM|A Chain A, Leucine Aminopeptidase (Unligated)
Length = 484
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 69 GIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQAC--GSR 126
GI+ E W + K N C+ + E D CGD QA G+
Sbjct: 75 GIDEQENWHEG-------KENIRAAVAAGCRQIQDLEIPSVEVDP---CGDAQAAAEGAV 124
Query: 127 FG----ECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVR 166
G + +K+K + + DQ W G++F G+ + R
Sbjct: 125 LGLYEYDDLKQKRKVVVSAKLHGSEDQEAWQRGVLFASGQNLAR 168
>pdb|2J9A|A Chain A, Bllap In Complex With Microginin Fr1
Length = 487
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 69 GIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQAC--GSR 126
GI+ E W + K N C+ + E D CGD QA G+
Sbjct: 75 GIDEQENWHEG-------KENIRAAVAAGCRQIQDLEIPSVEVDP---CGDAQAAAEGAV 124
Query: 127 FG----ECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVR 166
G + +K+K + + DQ W G++F G+ + R
Sbjct: 125 LGLYEYDDLKQKRKVVVSAKLHGSEDQEAWQRGVLFASGQNLAR 168
>pdb|2EWB|A Chain A, The Crystal Structure Of Bovine Lens Leucine
Aminopeptidase In Complex With Zofenoprilat
Length = 486
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 69 GIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQAC--GSR 126
GI+ E W + K N C+ + E D CGD QA G+
Sbjct: 75 GIDEQENWHEG-------KENIRAAVAAGCRQIQDLEIPSVEVDP---CGDAQAAAEGAV 124
Query: 127 FG----ECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVR 166
G + +K+K + + DQ W G++F G+ + R
Sbjct: 125 LGLYEYDDLKQKRKVVVSAKLHGSEDQEAWQRGVLFASGQNLAR 168
>pdb|1BPM|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1BPN|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1LAP|A Chain A, Molecular Structure Of Leucine Aminopeptidase At
2.7-Angstroms Resolution
Length = 487
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 69 GIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQAC--GSR 126
GI+ E W + K N C+ + E D CGD QA G+
Sbjct: 75 GIDEQENWHEG-------KENIRAAVAAGCRQIQDLEIPSVEVDP---CGDAQAAAEGAV 124
Query: 127 FG----ECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVR 166
G + +K+K + + DQ W G++F G+ + R
Sbjct: 125 LGLYEYDDLKQKRKVVVSAKLHGSEDQEAWQRGVLFASGQNLAR 168
>pdb|1BLL|E Chain E, X-Ray Crystallographic Determination Of The Structure Of
Bovine Lens Leucine Aminopeptidase Complexed With
Amastatin: Formulation Of A Catalytic Mechanism
Featuring A Gem-Diolate Transition State
Length = 488
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 69 GIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQAC--GSR 126
GI+ E W + K N C+ + E D CGD QA G+
Sbjct: 76 GIDEQENWHEG-------KENIRAAVAAGCRQIQDLEIPSVEVDP---CGDAQAAAEGAV 125
Query: 127 FG----ECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVR 166
G + +K+K + + DQ W G++F G+ + R
Sbjct: 126 LGLYEYDDLKQKRKVVVSAKLHGSEDQEAWQRGVLFASGQNLAR 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,504,108
Number of Sequences: 62578
Number of extensions: 445309
Number of successful extensions: 816
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 20
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)