Query 019630
Match_columns 338
No_of_seqs 189 out of 1311
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01928 Cyclophilin_PPIL3_like 100.0 2.1E-35 4.6E-40 258.9 16.4 143 163-319 1-148 (153)
2 COG0652 PpiB Peptidyl-prolyl c 100.0 1.7E-35 3.7E-40 260.5 15.3 143 165-331 2-156 (158)
3 cd01927 cyclophilin_WD40 cyclo 100.0 2E-34 4.4E-39 251.3 15.4 136 166-315 1-141 (148)
4 cd01923 cyclophilin_RING cyclo 100.0 5.2E-34 1.1E-38 251.5 16.2 136 165-314 2-142 (159)
5 cd01922 cyclophilin_SpCYP2_lik 100.0 4E-34 8.7E-39 249.0 15.1 139 166-319 1-144 (146)
6 KOG0881 Cyclophilin type pepti 100.0 6.3E-35 1.4E-39 245.6 7.9 146 163-322 10-160 (164)
7 cd01925 cyclophilin_CeCYP16-li 100.0 3.9E-33 8.4E-38 248.7 16.8 141 160-313 3-148 (171)
8 cd01921 cyclophilin_RRM cyclop 100.0 6.3E-33 1.4E-37 246.0 15.0 133 166-314 1-148 (166)
9 KOG0884 Similar to cyclophilin 100.0 1.5E-32 3.2E-37 230.2 9.7 136 163-312 1-141 (161)
10 PRK10903 peptidyl-prolyl cis-t 100.0 3E-31 6.6E-36 240.4 17.6 147 160-331 26-188 (190)
11 PRK10791 peptidyl-prolyl cis-t 100.0 1E-30 2.2E-35 231.9 16.5 145 165-331 2-162 (164)
12 cd01920 cyclophilin_EcCYP_like 100.0 7.7E-31 1.7E-35 230.4 15.2 136 167-327 2-153 (155)
13 KOG0883 Cyclophilin type, U bo 100.0 1.3E-31 2.8E-36 259.6 11.1 146 161-320 276-426 (518)
14 cd00317 cyclophilin cyclophili 100.0 4.1E-30 8.9E-35 221.6 15.5 134 166-319 1-144 (146)
15 KOG0880 Peptidyl-prolyl cis-tr 100.0 3E-30 6.6E-35 231.5 14.0 136 168-319 50-196 (217)
16 KOG0546 HSP90 co-chaperone CPR 100.0 9.1E-31 2E-35 252.9 10.6 137 169-320 20-173 (372)
17 cd01926 cyclophilin_ABH_like c 100.0 1E-29 2.2E-34 225.1 15.1 134 169-319 12-160 (164)
18 KOG0882 Cyclophilin-related pe 100.0 1.4E-30 3E-35 256.4 10.3 142 164-319 406-552 (558)
19 PLN03149 peptidyl-prolyl isome 100.0 3.2E-29 6.9E-34 226.5 17.7 135 170-319 31-180 (186)
20 PF00160 Pro_isomerase: Cyclop 100.0 1.7E-28 3.7E-33 213.3 16.8 127 165-309 2-142 (155)
21 PTZ00221 cyclophilin; Provisio 100.0 1.3E-28 2.7E-33 231.1 17.1 137 160-316 50-210 (249)
22 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.8E-29 6.1E-34 242.4 11.9 167 153-332 3-179 (439)
23 PTZ00060 cyclophilin; Provisio 100.0 2.5E-28 5.5E-33 220.0 16.8 124 169-308 27-166 (183)
24 cd01924 cyclophilin_TLP40_like 100.0 7.6E-29 1.6E-33 222.3 13.1 136 168-305 3-165 (176)
25 KOG0415 Predicted peptidyl pro 99.9 8.2E-28 1.8E-32 231.1 11.9 149 163-325 1-167 (479)
26 KOG0879 U-snRNP-associated cyc 99.9 3.4E-27 7.3E-32 201.0 9.2 135 169-319 22-171 (177)
27 KOG0111 Cyclophilin-type pepti 99.9 1.7E-25 3.6E-30 204.2 9.5 127 168-310 147-283 (298)
28 KOG0865 Cyclophilin type pepti 99.7 9E-18 1.9E-22 149.4 6.8 127 168-310 14-153 (167)
29 PF14295 PAN_4: PAN domain; PD 98.2 5.8E-07 1.3E-11 63.4 2.1 51 73-133 1-51 (51)
30 TIGR03268 methan_mark_3 putati 96.6 0.0053 1.2E-07 63.1 7.5 96 173-305 202-304 (503)
31 PRK00969 hypothetical protein; 96.6 0.0055 1.2E-07 63.1 7.3 96 173-305 205-307 (508)
32 cd01100 APPLE_Factor_XI_like S 96.1 0.01 2.2E-07 45.5 4.7 59 66-141 4-63 (73)
33 COG4070 Predicted peptidyl-pro 94.5 0.066 1.4E-06 53.9 5.5 96 173-305 204-306 (512)
34 smart00223 APPLE APPLE domain. 93.9 0.12 2.6E-06 40.7 5.0 52 71-136 7-58 (79)
35 PRK00969 hypothetical protein; 93.9 0.34 7.3E-06 50.3 9.4 114 162-308 50-171 (508)
36 COG4070 Predicted peptidyl-pro 93.7 0.17 3.6E-06 51.1 6.5 23 173-195 377-399 (512)
37 TIGR03268 methan_mark_3 putati 92.9 0.79 1.7E-05 47.5 10.3 115 161-308 45-168 (503)
38 PF12903 DUF3830: Protein of u 91.1 0.65 1.4E-05 41.0 6.3 22 173-194 9-30 (147)
39 KOG0882 Cyclophilin-related pe 89.7 0.28 6.1E-06 50.3 3.2 137 160-310 96-247 (558)
40 PF04126 Cyclophil_like: Cyclo 86.2 4 8.7E-05 34.5 7.7 102 163-304 1-113 (120)
41 COG2164 Uncharacterized conser 61.2 8.2 0.00018 32.4 2.8 109 162-306 3-119 (126)
42 PF00024 PAN_1: PAN domain Thi 55.8 27 0.00059 25.6 4.7 53 70-139 7-60 (79)
43 PF04024 PspC: PspC domain; I 46.0 30 0.00065 25.9 3.5 33 5-38 25-57 (61)
44 PF03032 Brevenin: Brevenin/es 33.5 24 0.00052 25.2 1.2 14 14-27 6-19 (46)
45 PF12273 RCR: Chitin synthesis 32.6 26 0.00056 29.7 1.5 12 196-207 75-87 (130)
46 PRK13718 conjugal transfer pro 31.7 49 0.0011 26.4 2.8 31 8-39 40-70 (84)
47 PF05913 DUF871: Bacterial pro 30.3 34 0.00074 34.4 2.1 48 257-305 298-350 (357)
48 PRK14750 kdpF potassium-transp 29.9 53 0.0011 21.2 2.2 17 14-34 9-25 (29)
49 PF13150 DUF3989: Protein of u 28.5 59 0.0013 26.1 2.8 28 10-38 25-52 (85)
50 PF06716 DUF1201: Protein of u 25.6 1.2E+02 0.0026 21.9 3.6 10 34-43 34-43 (54)
51 KOG3415 Putative Rab5-interact 24.8 59 0.0013 27.8 2.3 24 15-38 68-91 (129)
52 PF11100 TrbE: Conjugal transf 22.9 1.1E+02 0.0024 23.4 3.2 29 9-38 33-61 (66)
53 smart00473 PAN_AP divergent su 22.0 1.8E+02 0.0039 20.9 4.3 47 71-134 10-57 (78)
54 PF08802 CytB6-F_Fe-S: Cytochr 21.1 1.4E+02 0.0031 20.6 3.2 26 8-33 4-29 (39)
No 1
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=2.1e-35 Score=258.88 Aligned_cols=143 Identities=26% Similarity=0.396 Sum_probs=115.5
Q ss_pred eEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630 163 GIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETH 242 (338)
Q Consensus 163 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~ 242 (338)
|+|+|+|+.|+|+||||++.||++|+||++||+.+||+|+.|||++++ +.+|.|+|.....|+.+.+
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~-------------f~iq~Gd~~~~g~g~~~~~ 67 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKG-------------FMVQTGDPTGTGKGGESIW 67 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCC-------------CEEEccccCCCCCCCCccC
Confidence 578999999999999999999999999999999999999999999655 4444444433334444555
Q ss_pred CCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccceee
Q 019630 243 SITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNV 317 (338)
Q Consensus 243 g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~i~v 317 (338)
+..++++.....+|.++|+|+||++ +|||||++++.|+||++|+|||||+ +|||+|++|++++++.+.+|..+|
T Consensus 68 ~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~-~G~dvl~~I~~~~~~~~~~P~~~i 146 (153)
T cd01928 68 GKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVI-DGFETLDTLEKLPVDKKYRPLEEI 146 (153)
T ss_pred CCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEE-eCHHHHHHHHcCCCCCCCCCcCCe
Confidence 5555544333455678999999985 4799999999999999999999999 999999999999998766665444
Q ss_pred ee
Q 019630 318 SV 319 (338)
Q Consensus 318 ~v 319 (338)
+|
T Consensus 147 ~I 148 (153)
T cd01928 147 RI 148 (153)
T ss_pred EE
Confidence 43
No 2
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-35 Score=260.46 Aligned_cols=143 Identities=29% Similarity=0.405 Sum_probs=114.8
Q ss_pred EEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630 165 VRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGSLETH 242 (338)
Q Consensus 165 V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~ 242 (338)
+.++|+.|+|+|+||++.||+||+||++||+.|||+|+.||||++++ |+|||.+. ..+|+..
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~--------------~g~gg~~-- 65 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGG--------------DGTGGPG-- 65 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCC--------------CCCCCCC--
Confidence 68999999999999999999999999999999999999999996663 65555543 1333322
Q ss_pred CCcCCCcCccc--cCCC--CCceEeeeCCC------CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccc
Q 019630 243 SITFKEIPLEV--CSTI--RRGSVAWVGSG------PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVW 312 (338)
Q Consensus 243 g~~~~~i~~E~--~~~~--~rG~Vsma~sG------sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~ 312 (338)
..+++|. ..++ .||+|||||+| |||||++.++|+||++|+|||+|+ +|||+|++|+++++.....
T Consensus 66 ----~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv-~GmdvvdkI~~~~~~~~~~ 140 (158)
T COG0652 66 ----PPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVV-EGMDVVDKIKNGDTDDSGY 140 (158)
T ss_pred ----CCCcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEe-hhHHHHHHHHcCCccCCCc
Confidence 3445664 3344 49999999954 899999999999999999999999 9999999999998876543
Q ss_pred cceeeeeeeCCeeEEEEEe
Q 019630 313 SNVNVSVLEKPIPLRFRRI 331 (338)
Q Consensus 313 ~~i~v~vl~~pv~i~~~ri 331 (338)
. ..++.+|+.|...++
T Consensus 141 -~--~~~~~~~~~i~~~~~ 156 (158)
T COG0652 141 -V--QDVPADPVKILSVKI 156 (158)
T ss_pred -c--cCCCCCCeEEeeeee
Confidence 1 123367777777655
No 3
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=2e-34 Score=251.31 Aligned_cols=136 Identities=21% Similarity=0.259 Sum_probs=110.5
Q ss_pred EEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccCCCc
Q 019630 166 RLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSIT 245 (338)
Q Consensus 166 ~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~g~~ 245 (338)
+|+|++|+|+||||.+.||++|+||++||+.+||+|+.|||++++ +.+|.|+|.....|+.+.++..
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~-------------f~iq~Gd~~~~g~g~~~~~~~~ 67 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKG-------------FMIQTGDPTGDGTGGESIWGKE 67 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCC-------------cEEEecccCCCCCCCCcccCCc
Confidence 479999999999999999999999999999999999999999544 4444454443344455555555
Q ss_pred CCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccce
Q 019630 246 FKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNV 315 (338)
Q Consensus 246 ~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~i 315 (338)
++++......|.++|+||||++ +|||||++++.|+||++|+|||||+ +||++|++|++++++.+..|..
T Consensus 68 ~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~-~G~dvl~~I~~~~~~~~~~P~~ 141 (148)
T cd01927 68 FEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV-KGMDVVQRIENVKTDKNDRPYE 141 (148)
T ss_pred cccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEE-cCHHHHHHHHcCCCCCCCCCcC
Confidence 5544333455677899999984 4899999999999999999999999 9999999999999976655443
No 4
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=5.2e-34 Score=251.48 Aligned_cols=136 Identities=26% Similarity=0.306 Sum_probs=111.8
Q ss_pred EEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccCCC
Q 019630 165 VRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSI 244 (338)
Q Consensus 165 V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~g~ 244 (338)
|+|+|+.|+|+|+||++.||++|+||++||+.|||+|+.|||++++ +.+|.|+|.....|+.+.++.
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~-------------~~iq~Gd~~~~g~~~~~~~g~ 68 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRN-------------FMIQGGDPTGTGRGGESIWGK 68 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCC-------------cEEEecccCCCCCCCccccCC
Confidence 7899999999999999999999999999999999999999999554 444444444334455556666
Q ss_pred cCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccc
Q 019630 245 TFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSN 314 (338)
Q Consensus 245 ~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~ 314 (338)
.++++.+....|.++|+|+||++ +|||||++++.|+||++|+|||||+ +||++|++|++++++++..|.
T Consensus 69 ~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~-~G~~vl~~I~~~~~~~~~~P~ 142 (159)
T cd01923 69 PFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVV-GGLETLEAMENVPDPGTDRPK 142 (159)
T ss_pred ccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEE-cCHHHHHHHHcCCCCCCCCCC
Confidence 55544333355678999999985 4899999999999999999999999 999999999999987654443
No 5
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=4e-34 Score=249.00 Aligned_cols=139 Identities=23% Similarity=0.263 Sum_probs=109.9
Q ss_pred EEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccCCCc
Q 019630 166 RLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSIT 245 (338)
Q Consensus 166 ~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~g~~ 245 (338)
+|+|+.|+|+||||.+.||++|+||++||+.+||+|+.|||++++ +.+|.|+|.....++.+.++..
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~-------------f~iq~Gd~~~~g~~~~~~~~~~ 67 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKD-------------FMIQGGDPTGTGRGGASIYGKK 67 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCC-------------cEEEecccCCCCCCcccccCCC
Confidence 378999999999999999999999999999999999999999655 3444444433333444455555
Q ss_pred CCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccceeeee
Q 019630 246 FKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVSV 319 (338)
Q Consensus 246 ~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~i~v~v 319 (338)
++++.....+|.++|+|||+++ +|||||++++.|+||++|+|||||+ +|||||++|++++++ +..|..+|+|
T Consensus 68 ~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~-~G~dvl~~I~~~~~~-~~~P~~~I~I 144 (146)
T cd01922 68 FEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVS-KGMKVIENMVEVQTQ-TDRPIDEVKI 144 (146)
T ss_pred cccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEE-cCHHHHHHHHhCCCC-CCCcCCCeEE
Confidence 5543233355678999999985 4899999999999999999999999 999999999999997 4444444443
No 6
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-35 Score=245.63 Aligned_cols=146 Identities=23% Similarity=0.275 Sum_probs=134.7
Q ss_pred eEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630 163 GIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETH 242 (338)
Q Consensus 163 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~ 242 (338)
..|.++|+.|.|++|||-+.||+||.||.+|++.|||+|..|||+ |++|++|.|||.+...||.++|
T Consensus 10 ~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRi-------------i~DFmiQGGDPTGTGRGGaSIY 76 (164)
T KOG0881|consen 10 PNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRI-------------IKDFMIQGGDPTGTGRGGASIY 76 (164)
T ss_pred CeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeeh-------------hhhheeecCCCCCCCCCccccc
Confidence 569999999999999999999999999999999999999999999 6677777777777889999999
Q ss_pred CCcCCCcCccccCCCCCceEeeeCCC-----CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccceee
Q 019630 243 SITFKEIPLEVCSTIRRGSVAWVGSG-----PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNV 317 (338)
Q Consensus 243 g~~~~~i~~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~i~v 317 (338)
|..|.++-++.+.|...|.|+|||+| |||||+|++.++||++||+||||. .||+|+.+|..++|++...+..++
T Consensus 77 G~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~-~Gm~vikr~G~v~Td~~DRPi~~~ 155 (164)
T KOG0881|consen 77 GDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVC-SGMEVIKRMGMVETDNSDRPIDEV 155 (164)
T ss_pred cchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhh-hhHHHHHhhcceecCCCCCCccce
Confidence 99999877778888899999999964 899999999999999999999999 999999999999999998888778
Q ss_pred eeeeC
Q 019630 318 SVLEK 322 (338)
Q Consensus 318 ~vl~~ 322 (338)
+|++.
T Consensus 156 kIika 160 (164)
T KOG0881|consen 156 KIIKA 160 (164)
T ss_pred eeEee
Confidence 77764
No 7
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.9e-33 Score=248.72 Aligned_cols=141 Identities=23% Similarity=0.270 Sum_probs=116.2
Q ss_pred CCceEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCc
Q 019630 160 KGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSL 239 (338)
Q Consensus 160 ~~~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~ 239 (338)
+...+|.|+|+.|+|+|+||++.||++|+||++||+.+||+|+.|||+++ ++.+|.|+|.....|+.
T Consensus 3 ~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~-------------~f~iQgGd~~~~g~g~~ 69 (171)
T cd01925 3 PTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVP-------------GFIIQGGDPTGTGTGGE 69 (171)
T ss_pred CcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcC-------------CcEEEccccCCCCccCc
Confidence 45578999999999999999999999999999999999999999999954 44455555544445555
Q ss_pred ccCCCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCcccc
Q 019630 240 ETHSITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWS 313 (338)
Q Consensus 240 ~~~g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~ 313 (338)
+.++..++++.+....+.++|+|+||++ +|||||++++.++||++|+|||+|++++|+++++|++++++.+..+
T Consensus 70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P 148 (171)
T cd01925 70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERP 148 (171)
T ss_pred ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCc
Confidence 6666666554444455778999999985 4899999999999999999999999667999999999999865433
No 8
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=6.3e-33 Score=246.05 Aligned_cols=133 Identities=25% Similarity=0.341 Sum_probs=106.1
Q ss_pred EEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCCcccC-
Q 019630 166 RLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGSLETH- 242 (338)
Q Consensus 166 ~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~- 242 (338)
+|+|+.|+|+||||.+.||++|+||++||+.+||+|+.||||++++ |+||+.++ ..++.+.+
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~---------------g~~~~~~~~ 65 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGT---------------GAGGESIYS 65 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCC---------------CCCCccccc
Confidence 4789999999999999999999999999999999999999997774 77776653 11221111
Q ss_pred ------CCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCC-CCCCCCCceEEEEEEcccHHHHHHHhcCCCCCc
Q 019630 243 ------SITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLAN-HNEWKKVYTVFGIVLPEDMAIAERIARLPTKQE 310 (338)
Q Consensus 243 ------g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d-~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~ 310 (338)
+..+.+..+....|.++|+||||++ +|||||++.+ .++||++|+|||||+ +||++|++|++++++.+
T Consensus 66 ~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi-~G~dvv~~I~~~~~~~~ 144 (166)
T cd01921 66 QLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVV-EGFDVLEKINDAIVDDD 144 (166)
T ss_pred ccccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEE-cCHHHHHHHHcCCCCCC
Confidence 1123322223345678999999984 4899999986 799999999999999 99999999999999876
Q ss_pred cccc
Q 019630 311 VWSN 314 (338)
Q Consensus 311 ~~~~ 314 (338)
..|.
T Consensus 145 ~~P~ 148 (166)
T cd01921 145 GRPL 148 (166)
T ss_pred CCCC
Confidence 5444
No 9
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.5e-32 Score=230.20 Aligned_cols=136 Identities=26% Similarity=0.436 Sum_probs=129.5
Q ss_pred eEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630 163 GIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETH 242 (338)
Q Consensus 163 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~ 242 (338)
++|.++|..|+|.||||-+.+|++|+||+.||...||+|+.|||. ||+++++.|+|.....||.++|
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~-------------~~~f~v~~~~~~~tgrgg~siw 67 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRN-------------IKGFMVQTGDPTHTGRGGNSIW 67 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCC-------------CCCcEEEeCCCCCCCCCCcccc
Confidence 579999999999999999999999999999999999999999999 7888888999999999999999
Q ss_pred CCcCCCcCccccCCCCCceEeeeCCC-----CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccc
Q 019630 243 SITFKEIPLEVCSTIRRGSVAWVGSG-----PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVW 312 (338)
Q Consensus 243 g~~~~~i~~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~ 312 (338)
|..|+++-.|.++|..||.|+||++| |||||+.+..|+||-+|||||+|+ +|++.|+.|+.++++++.|
T Consensus 68 g~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvi-dg~etldele~l~v~~kty 141 (161)
T KOG0884|consen 68 GKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI-DGLETLDELEKLPVNEKTY 141 (161)
T ss_pred CCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeec-cchhhHHHHhhcccCcccc
Confidence 99999888889999999999999965 899999999999999999999999 9999999999999999854
No 10
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.97 E-value=3e-31 Score=240.45 Aligned_cols=147 Identities=26% Similarity=0.395 Sum_probs=114.1
Q ss_pred CCceEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCC
Q 019630 160 KGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQG 237 (338)
Q Consensus 160 ~~~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqG 237 (338)
+++.+|.|+|+.|+|+||||++.||++|+||++||+.|||+|+.|||+++++ |+||+.+. ..+
T Consensus 26 ~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~---------------~~~ 90 (190)
T PRK10903 26 KGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ---------------MQQ 90 (190)
T ss_pred CCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCC---------------CCC
Confidence 5677899999999999999999999999999999999999999999997663 66665432 100
Q ss_pred CcccCCCcCCCcCccc--cCCCCCceEeeeCC------CCeEEEEcCCCCCCCC-----CceEEEEEEcccHHHHHHHhc
Q 019630 238 SLETHSITFKEIPLEV--CSTIRRGSVAWVGS------GPEFFISLANHNEWKK-----VYTVFGIVLPEDMAIAERIAR 304 (338)
Q Consensus 238 g~~~~g~~~~~i~~E~--~~~~~rG~Vsma~s------GsqFFItL~d~p~ldg-----~ytVFG~Vi~eGmdvLdkI~~ 304 (338)
..++..+ ++|. ..++++|+||||++ +|||||++.+.++||+ +|+|||+|+ +|||||++|++
T Consensus 91 --~~~~~~~---~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~-eG~dvl~~I~~ 164 (190)
T PRK10903 91 --KKPNPPI---KNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVV-KGMDVADKISQ 164 (190)
T ss_pred --CCCCCcc---cCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEe-cCHHHHHHHHc
Confidence 0112222 2332 23467999999973 4899999999999984 899999999 99999999999
Q ss_pred CCCCCc-cccceeeeeeeCCeeEEEEEe
Q 019630 305 LPTKQE-VWSNVNVSVLEKPIPLRFRRI 331 (338)
Q Consensus 305 ~~t~~~-~~~~i~v~vl~~pv~i~~~ri 331 (338)
++++.+ ++.+ ++..||.|....+
T Consensus 165 ~~~~~~~~~~~----~P~~~v~I~~~~v 188 (190)
T PRK10903 165 VPTHDVGPYQN----VPSKPVVILSAKV 188 (190)
T ss_pred CCCCCCCCCCC----cccCCeEEEEEEE
Confidence 999753 2222 4667777775543
No 11
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.97 E-value=1e-30 Score=231.93 Aligned_cols=145 Identities=21% Similarity=0.274 Sum_probs=105.6
Q ss_pred EEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630 165 VRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGSLETH 242 (338)
Q Consensus 165 V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~ 242 (338)
|+|+|++|+|+|+||++.||++|+||++||+.+||+|+.||||++++ |+||+... ..+ ..+
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~--------------~~~---~~~ 64 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG--------------MKQ---KAT 64 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC--------------CCc---CCC
Confidence 67999999999999999999999999999999999999999996553 55553211 000 011
Q ss_pred CCcCCCcCccccCCCCCceEeeeCC------CCeEEEEcCCCCCCC-------C-CceEEEEEEcccHHHHHHHhcCCCC
Q 019630 243 SITFKEIPLEVCSTIRRGSVAWVGS------GPEFFISLANHNEWK-------K-VYTVFGIVLPEDMAIAERIARLPTK 308 (338)
Q Consensus 243 g~~~~~i~~E~~~~~~rG~Vsma~s------GsqFFItL~d~p~ld-------g-~ytVFG~Vi~eGmdvLdkI~~~~t~ 308 (338)
+..++++.+. ..++++|+||||+. +|||||++.+.++|| + +|||||+|+ +|||||++|++++++
T Consensus 65 ~~~~~~e~~~-~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~-eG~dvl~~I~~~~~~ 142 (164)
T PRK10791 65 KEPIKNEANN-GLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVV-EGMDVVDKIKGVATG 142 (164)
T ss_pred CCCcCCcccc-cccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEe-cCHHHHHHHHcCcCC
Confidence 2223222111 22357999999973 489999999988775 3 799999999 999999999999997
Q ss_pred CccccceeeeeeeCCeeEEEEEe
Q 019630 309 QEVWSNVNVSVLEKPIPLRFRRI 331 (338)
Q Consensus 309 ~~~~~~i~v~vl~~pv~i~~~ri 331 (338)
.+...+ ..++.+|.|+...|
T Consensus 143 ~~~~~~---~~P~~~v~I~~~~i 162 (164)
T PRK10791 143 RSGMHQ---DVPKEDVIIESVTV 162 (164)
T ss_pred CCCccC---CCcCCCeEEEEEEE
Confidence 632111 12445566655444
No 12
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.97 E-value=7.7e-31 Score=230.42 Aligned_cols=136 Identities=25% Similarity=0.340 Sum_probs=104.9
Q ss_pred EEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCCcccCCC
Q 019630 167 LETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGSLETHSI 244 (338)
Q Consensus 167 l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~g~ 244 (338)
|+|+.|+|+|+||++.||++|+||++||+.|||+|+.||||++++ |+||+... ..+ ..++.
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~---------------~~~--~~~~~ 64 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPD---------------LAQ--KETLK 64 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCC---------------CCc--cccCC
Confidence 789999999999999999999999999999999999999996653 55554432 111 01122
Q ss_pred cCCCcCcccc--CCCCCceEeeeCC------CCeEEEEcCCCCCCCC-----CceEEEEEEcccHHHHHHHhcCCCCCc-
Q 019630 245 TFKEIPLEVC--STIRRGSVAWVGS------GPEFFISLANHNEWKK-----VYTVFGIVLPEDMAIAERIARLPTKQE- 310 (338)
Q Consensus 245 ~~~~i~~E~~--~~~~rG~Vsma~s------GsqFFItL~d~p~ldg-----~ytVFG~Vi~eGmdvLdkI~~~~t~~~- 310 (338)
++++|.. .++++|+||||++ +|||||++++.++||+ +|||||+|+ +||+||++|++++++..
T Consensus 65 ---~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~-eG~dvl~~I~~~~~~~~~ 140 (155)
T cd01920 65 ---PIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVT-EGMDVVDKIAGVETYSFG 140 (155)
T ss_pred ---cccCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEe-cCHHHHHHHHcCCccCCC
Confidence 2333332 2468999999983 4899999999999995 799999999 99999999999999765
Q ss_pred cccceeeeeeeCCeeEE
Q 019630 311 VWSNVNVSVLEKPIPLR 327 (338)
Q Consensus 311 ~~~~i~v~vl~~pv~i~ 327 (338)
+..+ ++..||.|.
T Consensus 141 ~~~~----~p~~~v~i~ 153 (155)
T cd01920 141 SYQD----VPVQDVIIE 153 (155)
T ss_pred CcCC----CcCCCeEEE
Confidence 2222 344566554
No 13
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-31 Score=259.58 Aligned_cols=146 Identities=24% Similarity=0.302 Sum_probs=132.7
Q ss_pred CceEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcc
Q 019630 161 GEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLE 240 (338)
Q Consensus 161 ~~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~ 240 (338)
..+.|.|.|+.|+|-|||+.|.||++|+||+.||+.|||+|+.|||. |.||++|.|||.+...||.+
T Consensus 276 kkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRs-------------IrnFmiQGGDPTGTG~GGeS 342 (518)
T KOG0883|consen 276 KKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRS-------------IRNFMIQGGDPTGTGRGGES 342 (518)
T ss_pred ccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHH-------------HHHHeeeCCCCCCCCCCCcc
Confidence 35789999999999999999999999999999999999999999999 67777777778778899999
Q ss_pred cCCCcCCCcCccccCCCCCceEeeeCCC-----CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccce
Q 019630 241 THSITFKEIPLEVCSTIRRGSVAWVGSG-----PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNV 315 (338)
Q Consensus 241 ~~g~~~~~i~~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~i 315 (338)
+||.+|+++....+.|..||+|+|||+| |||||+..+..+||++|||||+|+ -|+++|.+|++++++++..|..
T Consensus 343 iWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvV-GGldtL~amEnve~d~~DrP~e 421 (518)
T KOG0883|consen 343 IWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVV-GGLDTLTAMENVETDEKDRPKE 421 (518)
T ss_pred ccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeee-ccHHHHHHHhcCCCCCCCCccc
Confidence 9999999887777888899999999965 899999999999999999999999 8999999999999999876665
Q ss_pred eeeee
Q 019630 316 NVSVL 320 (338)
Q Consensus 316 ~v~vl 320 (338)
.|+|.
T Consensus 422 ~I~i~ 426 (518)
T KOG0883|consen 422 EIKIE 426 (518)
T ss_pred ceEEe
Confidence 55443
No 14
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.97 E-value=4.1e-30 Score=221.63 Aligned_cols=134 Identities=28% Similarity=0.386 Sum_probs=107.6
Q ss_pred EEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCCcccCC
Q 019630 166 RLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGSLETHS 243 (338)
Q Consensus 166 ~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~g 243 (338)
.++|+.|+|+|+||++.||++|+||++||+.++|+|+.|||+++++ |+||+... ..++ ...+
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~---------------~~~~-~~~~ 64 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGT---------------GGGG-SGPG 64 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCC---------------CCCC-CcCC
Confidence 3789999999999999999999999999999999999999997653 66665543 1111 1122
Q ss_pred CcCCCcCccccC---CCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccce
Q 019630 244 ITFKEIPLEVCS---TIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNV 315 (338)
Q Consensus 244 ~~~~~i~~E~~~---~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~i 315 (338)
.. +++|..+ +.++|+|+|+++ ++||||++.+.++||++|+|||+|+ +||++|++|++++++++..+..
T Consensus 65 ~~---~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~~~~P~~ 140 (146)
T cd00317 65 YK---FPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVV-EGMDVVDKIERGDTDENGRPIK 140 (146)
T ss_pred Cc---cCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEe-CCHHHHHHHHcCCCCCCCcCcC
Confidence 22 3344432 578999999985 4899999999999999999999999 8999999999999987666655
Q ss_pred eeee
Q 019630 316 NVSV 319 (338)
Q Consensus 316 ~v~v 319 (338)
+++|
T Consensus 141 ~i~I 144 (146)
T cd00317 141 PVTI 144 (146)
T ss_pred ceEE
Confidence 5544
No 15
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-30 Score=231.45 Aligned_cols=136 Identities=21% Similarity=0.230 Sum_probs=117.1
Q ss_pred EEeeeeEEEEecCCCChHHHHHHHHHHhC---CC-CCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCCccc
Q 019630 168 ETEYGTLHVKLLPDSAPLSVAYMLELLAS---RH-CVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGSLET 241 (338)
Q Consensus 168 ~T~~G~I~IeL~~d~AP~tv~nFl~L~~~---g~-YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg~~~ 241 (338)
.-..|||+|.||++.+|+||+||.+||.. +| |.|+.||||++++ |+||.+.. -..|+.++
T Consensus 50 ~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g--------------~gtGg~SI 115 (217)
T KOG0880|consen 50 GEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKG--------------DGTGGKSI 115 (217)
T ss_pred CEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccC--------------CCCCCeEe
Confidence 45679999999999999999999999983 34 9999999997774 77765532 24578899
Q ss_pred CCCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCcccccee
Q 019630 242 HSITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVN 316 (338)
Q Consensus 242 ~g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~i~ 316 (338)
||..|+++ +..+.|.++|.|||||. ||||||++...++|||+|+|||+|+ +||++|.+|+.++|++...|.-.
T Consensus 116 yG~~F~DE-Nf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl-~Gmdvv~~Ie~~~TD~~dkP~e~ 193 (217)
T KOG0880|consen 116 YGEKFPDE-NFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVL-EGMDVVRKIENVKTDERDKPLED 193 (217)
T ss_pred ecCCCCCc-cceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeeh-hhHHHHHHHHhcccCCCCCcccc
Confidence 99999877 78899999999999994 5999999999999999999999999 99999999999999998776544
Q ss_pred eee
Q 019630 317 VSV 319 (338)
Q Consensus 317 v~v 319 (338)
++|
T Consensus 194 v~I 196 (217)
T KOG0880|consen 194 VVI 196 (217)
T ss_pred EEE
Confidence 433
No 16
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.1e-31 Score=252.91 Aligned_cols=137 Identities=20% Similarity=0.202 Sum_probs=117.6
Q ss_pred EeeeeEEEEecCCCChHHHHHHHHHHh--CC---------CCCCcEEEEeeeCCccccCCCCcccCCCCccCCC-ccccC
Q 019630 169 TEYGTLHVKLLPDSAPLSVAYMLELLA--SR---------HCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPP-FALIQ 236 (338)
Q Consensus 169 T~~G~I~IeL~~d~AP~tv~nFl~L~~--~g---------~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p-~~liq 236 (338)
-+.|||+|+||.|.+|+||+||+.||. .| +|+|+.||||+ |+|++|.||= .+.+.
T Consensus 20 e~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRVi-------------K~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 20 EPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVI-------------KNFMIQGGDFSEGNGT 86 (372)
T ss_pred cccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheee-------------ecceeeccccccCCCC
Confidence 357999999999999999999999996 22 59999999994 5555555552 33578
Q ss_pred CCcccCCCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCcc
Q 019630 237 GSLETHSITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEV 311 (338)
Q Consensus 237 Gg~~~~g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~ 311 (338)
||.++||..|.++ +..+.|.++++|||||. |||||||+.+.|||||+|+|||+|| .|++||+.|++++++.+.
T Consensus 87 GGeSIYG~~FdDE-nF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI-~G~~VVr~IEn~~~d~~s 164 (372)
T KOG0546|consen 87 GGESIYGEKFDDE-NFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVI-KGKEVVREIENLETDEES 164 (372)
T ss_pred Ccccccccccccc-cceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEe-echhHHHHHhccccccCC
Confidence 8999999999877 88899999999999994 5999999999999999999999999 999999999999999886
Q ss_pred ccceeeeee
Q 019630 312 WSNVNVSVL 320 (338)
Q Consensus 312 ~~~i~v~vl 320 (338)
.|..+|.|.
T Consensus 165 kP~~dV~I~ 173 (372)
T KOG0546|consen 165 KPLADVVIS 173 (372)
T ss_pred CCccceEec
Confidence 666555543
No 17
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.97 E-value=1e-29 Score=225.07 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=105.1
Q ss_pred EeeeeEEEEecCCCChHHHHHHHHHHh--CC------CCCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCC
Q 019630 169 TEYGTLHVKLLPDSAPLSVAYMLELLA--SR------HCVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGS 238 (338)
Q Consensus 169 T~~G~I~IeL~~d~AP~tv~nFl~L~~--~g------~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg 238 (338)
++.|+|+||||.+.||++|+||++||+ .+ ||+|+.|||+++++ |+||+.. ....++
T Consensus 12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~--------------~~g~~~ 77 (164)
T cd01926 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTR--------------GNGTGG 77 (164)
T ss_pred eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccC--------------CCCCCC
Confidence 579999999999999999999999998 35 89999999996553 5555431 122344
Q ss_pred cccCCCcCCCcCccccCCCCCceEeeeCCC-----CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCcccc
Q 019630 239 LETHSITFKEIPLEVCSTIRRGSVAWVGSG-----PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWS 313 (338)
Q Consensus 239 ~~~~g~~~~~i~~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~ 313 (338)
.+.++..+++. .....|.++|+|+||+++ |||||++++.++||++|+|||||+ +|||||++|++++++ +.+|
T Consensus 78 ~~~~g~~~~~e-~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~-~G~dvl~~i~~~~~~-~~~P 154 (164)
T cd01926 78 KSIYGEKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVV-EGMDVVKKIENVGSG-NGKP 154 (164)
T ss_pred CcccCCccCCC-CccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEE-EcHHHHHHHHcCCCC-CCCC
Confidence 44555555432 223556689999999854 899999999999999999999999 999999999999997 5555
Q ss_pred ceeeee
Q 019630 314 NVNVSV 319 (338)
Q Consensus 314 ~i~v~v 319 (338)
..+|+|
T Consensus 155 ~~~i~I 160 (164)
T cd01926 155 KKKVVI 160 (164)
T ss_pred cCCeEE
Confidence 544444
No 18
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-30 Score=256.42 Aligned_cols=142 Identities=23% Similarity=0.265 Sum_probs=126.9
Q ss_pred EEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccCC
Q 019630 164 IVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHS 243 (338)
Q Consensus 164 ~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~g 243 (338)
.+.++|++|+|.|.|||+++|+||+||...+++|||||..|||| ||++++|.|||.+-+.||.++||
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhri-------------ik~fmiqtgdp~g~gtggesiwg 472 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRI-------------IKGFMIQTGDPLGDGTGGESIWG 472 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHh-------------hhhheeecCCCCCCCCCCccccc
Confidence 47899999999999999999999999999999999999999999 88999999999989999999999
Q ss_pred CcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccceeee
Q 019630 244 ITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVS 318 (338)
Q Consensus 244 ~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~i~v~ 318 (338)
..|+++-...+.|.++=+|+|||+ ||||||++-+.|+||++|||||||+ .||+|+++|+++.|+....|--++.
T Consensus 473 ~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~-~gm~vvqri~~v~t~k~drp~e~v~ 551 (558)
T KOG0882|consen 473 KDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVT-AGMDVVQRIEQVKTDKYDRPYEDVK 551 (558)
T ss_pred ccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEe-cchhHHhHhhhcccCcCCCCCCcee
Confidence 988765555566778999999995 4899999999999999999999999 9999999999999976544443333
Q ss_pred e
Q 019630 319 V 319 (338)
Q Consensus 319 v 319 (338)
|
T Consensus 552 i 552 (558)
T KOG0882|consen 552 I 552 (558)
T ss_pred E
Confidence 3
No 19
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.96 E-value=3.2e-29 Score=226.51 Aligned_cols=135 Identities=21% Similarity=0.292 Sum_probs=105.1
Q ss_pred eeeeEEEEecCCCChHHHHHHHHHHhCCC--------CCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCCc
Q 019630 170 EYGTLHVKLLPDSAPLSVAYMLELLASRH--------CVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGSL 239 (338)
Q Consensus 170 ~~G~I~IeL~~d~AP~tv~nFl~L~~~g~--------YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg~ 239 (338)
+.|+|+||||.+.||++|+||++||+..| |+++.||||++++ |+||+. .....|+.
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~--------------~~~g~g~~ 96 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFL--------------KGDGTGCV 96 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcc--------------cCCCCCcc
Confidence 56999999999999999999999997544 9999999996553 555542 12234444
Q ss_pred ccCCCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccc
Q 019630 240 ETHSITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSN 314 (338)
Q Consensus 240 ~~~g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~ 314 (338)
+.++..|+++ .....|.++|+|+|+++ +|||||++.+.|+||++|+|||+|+.+||+||++|++++++.+..|.
T Consensus 97 ~~~g~~f~~e-~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~ 175 (186)
T PLN03149 97 SIYGSKFEDE-NFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPK 175 (186)
T ss_pred cccCCccCCc-ccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCc
Confidence 5555555432 22355678999999985 48999999999999999999999984599999999999998765555
Q ss_pred eeeee
Q 019630 315 VNVSV 319 (338)
Q Consensus 315 i~v~v 319 (338)
..|+|
T Consensus 176 ~~i~I 180 (186)
T PLN03149 176 LACVI 180 (186)
T ss_pred CCeEE
Confidence 44443
No 20
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.96 E-value=1.7e-28 Score=213.27 Aligned_cols=127 Identities=35% Similarity=0.488 Sum_probs=103.8
Q ss_pred EEEEEe-eeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCCc-c
Q 019630 165 VRLETE-YGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGSL-E 240 (338)
Q Consensus 165 V~l~T~-~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg~-~ 240 (338)
|.|+|+ .|+|+|+||++.||++|+||++||+.++|+|+.|||++++. |+||+.+... .+.. .
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~--------------~~~~~~ 67 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGG--------------YGREDS 67 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSS--------------STSEEB
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCC--------------cccccc
Confidence 689997 99999999999999999999999999999999999997663 6666654411 0000 0
Q ss_pred cCCCcCCCcCccc---cCCCCCceEeeeCC-------CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCC
Q 019630 241 THSITFKEIPLEV---CSTIRRGSVAWVGS-------GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQ 309 (338)
Q Consensus 241 ~~g~~~~~i~~E~---~~~~~rG~Vsma~s-------GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~ 309 (338)
..+. .+++|. ...+++|+|+|+++ +|||||+|++.++||++|+|||+|+ +||++|++|++++++.
T Consensus 68 ~~~~---~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~-~G~~vl~~i~~~~~~~ 142 (155)
T PF00160_consen 68 TGGE---PIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVI-EGMDVLDKIEAGPTDE 142 (155)
T ss_dssp TTBS---CBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEE-EHHHHHHHHHTSBBTT
T ss_pred cCcc---ccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEe-hhHHHHHHHHCCCCCC
Confidence 1111 255555 34459999999964 4899999999999999999999999 9999999999998887
No 21
>PTZ00221 cyclophilin; Provisional
Probab=99.96 E-value=1.3e-28 Score=231.15 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=107.2
Q ss_pred CCceEEEEEEe-----eeeEEEEecCCCChHHHHHHHHHHhCC-----------CCCCcEEEEeeeC---CccccCCCCc
Q 019630 160 KGEGIVRLETE-----YGTLHVKLLPDSAPLSVAYMLELLASR-----------HCVGCQFHRAESR---GTHWDTEGNH 220 (338)
Q Consensus 160 ~~~~~V~l~T~-----~G~I~IeL~~d~AP~tv~nFl~L~~~g-----------~YdG~~F~Rv~~~---~q~GDp~g~~ 220 (338)
.....|.|+++ .|+|+|+||.+.||+||+||++||+.. +|+|+.||||+++ +|+||+.+.
T Consensus 50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~- 128 (249)
T PTZ00221 50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF- 128 (249)
T ss_pred CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC-
Confidence 34678999877 567999999999999999999999732 3999999999743 255554421
Q ss_pred ccCCCCccCCCccccCCCcccCCCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEccc
Q 019630 221 IENAPGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPED 295 (338)
Q Consensus 221 ik~~~~~~G~p~~liqGg~~~~g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eG 295 (338)
+.+.+|..|.++ ....+|.++|+|+||++ ||||||+|.+.|+||++|+|||+|+ +|
T Consensus 129 -----------------g~s~~G~~f~dE-~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVv-eG 189 (249)
T PTZ00221 129 -----------------NVSSTGTPIADE-GYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAV-DD 189 (249)
T ss_pred -----------------CccCCCCcccCc-cccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEE-eC
Confidence 223445455433 22456789999999985 4899999999999999999999999 99
Q ss_pred HHHHHHHhcCCCCCcccccee
Q 019630 296 MAIAERIARLPTKQEVWSNVN 316 (338)
Q Consensus 296 mdvLdkI~~~~t~~~~~~~i~ 316 (338)
|+||++|++++++....|..+
T Consensus 190 mdVv~kIe~v~~d~~grP~~~ 210 (249)
T PTZ00221 190 LSLLEKLESLPLDDVGRPLLP 210 (249)
T ss_pred HHHHHHHHcCCcCCCCCCCCC
Confidence 999999999998765444433
No 22
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-29 Score=242.42 Aligned_cols=167 Identities=22% Similarity=0.212 Sum_probs=137.0
Q ss_pred ccccccCCCceEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCc
Q 019630 153 TSGLIFGKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPF 232 (338)
Q Consensus 153 tSg~i~~~~~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~ 232 (338)
|+-++.+...+.|++.|+.|+|.|||+..+||++|.||++||-.|||+|+.|||++ |+|.+|+|+|.
T Consensus 3 ~~~~~EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlv-------------p~f~~Qggdp~ 69 (439)
T KOG0885|consen 3 TSYNLEPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLV-------------PGFLVQGGDPT 69 (439)
T ss_pred cccccCCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeec-------------cchhcccCCCC
Confidence 55567788889999999999999999999999999999999999999999999995 55555555555
Q ss_pred cccCCCcccCCCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCC
Q 019630 233 ALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPT 307 (338)
Q Consensus 233 ~liqGg~~~~g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t 307 (338)
+...||-++||.+|+++.+..+...+||+|+||++ ||||||+|++.|+|+++||+||+|+++.+..+-+|..+++
T Consensus 70 ~~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~ei 149 (439)
T KOG0885|consen 70 GTGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEI 149 (439)
T ss_pred CCCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhccccc
Confidence 56778999999988744333333347999999994 5899999999999999999999999888999999999999
Q ss_pred CCccc-----cceeeeeeeCCeeEEEEEec
Q 019630 308 KQEVW-----SNVNVSVLEKPIPLRFRRIS 332 (338)
Q Consensus 308 ~~~~~-----~~i~v~vl~~pv~i~~~ri~ 332 (338)
+.+.. .-+.+.|+..|+.-...|..
T Consensus 150 da~~Rp~~p~kI~s~EV~~npFdDI~pr~~ 179 (439)
T KOG0885|consen 150 DADDRPVDPPKIKSVEVLINPFDDIKPREL 179 (439)
T ss_pred ccccCCCCccceeeeEeecCchhhcchhhh
Confidence 86533 33356777777766555543
No 23
>PTZ00060 cyclophilin; Provisional
Probab=99.96 E-value=2.5e-28 Score=220.04 Aligned_cols=124 Identities=20% Similarity=0.231 Sum_probs=99.1
Q ss_pred EeeeeEEEEecCCCChHHHHHHHHHHh---------CCCCCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCC
Q 019630 169 TEYGTLHVKLLPDSAPLSVAYMLELLA---------SRHCVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQG 237 (338)
Q Consensus 169 T~~G~I~IeL~~d~AP~tv~nFl~L~~---------~g~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqG 237 (338)
++.|+|+||||.+.||++|+||++||+ .++|+|+.||||++++ |+||+.. ....+
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~--------------~~g~~ 92 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITN--------------HNGTG 92 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccC--------------CCCCC
Confidence 467999999999999999999999996 5699999999996553 5555432 12234
Q ss_pred CcccCCCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCC
Q 019630 238 SLETHSITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTK 308 (338)
Q Consensus 238 g~~~~g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~ 308 (338)
+.+.++..++++ ....+|.++|+|+|+++ +|||||++.+.|+||++|+|||+|+ +|||||++|++.++.
T Consensus 93 g~~~~g~~~~~e-~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi-~G~dvl~~I~~~~~~ 166 (183)
T PTZ00060 93 GESIYGRKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVI-EGMEVVRAMEKEGTQ 166 (183)
T ss_pred CCcccccccCCc-cccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEE-ccHHHHHHHHccCCC
Confidence 444555554432 22345667999999985 5899999999999999999999999 999999999998874
No 24
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.96 E-value=7.6e-29 Score=222.30 Aligned_cols=136 Identities=23% Similarity=0.322 Sum_probs=100.3
Q ss_pred EEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCC--ccccCCCCcccCCC-CccCC----CccccC--CC
Q 019630 168 ETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRG--THWDTEGNHIENAP-GGYGP----PFALIQ--GS 238 (338)
Q Consensus 168 ~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~--q~GDp~g~~ik~~~-~~~G~----p~~liq--Gg 238 (338)
+|++|+|+|+||++.||+||+||++||+.+||+|+.||||++++ |+|||.+.. ++.. ...|. |..+.. .+
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~-~~~~~~~~~~~~~~p~e~~~~~~~ 81 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKN-PGFPDPETGKSRTIPLEIKPEGQK 81 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCC-CCcccccccccccccceecccCCC
Confidence 58999999999999999999999999999999999999999885 999887651 1100 00010 110000 11
Q ss_pred cccCCCcCC----CcCccccCCCCCceEeeeCC-------CCeEEEEcC-------CCCCCCCCceEEEEEEcccHHHHH
Q 019630 239 LETHSITFK----EIPLEVCSTIRRGSVAWVGS-------GPEFFISLA-------NHNEWKKVYTVFGIVLPEDMAIAE 300 (338)
Q Consensus 239 ~~~~g~~~~----~i~~E~~~~~~rG~Vsma~s-------GsqFFItL~-------d~p~ldg~ytVFG~Vi~eGmdvLd 300 (338)
.+.++..+. .......+++++|+||||++ +|||||++. +.++||++|||||+|+ +|||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vv-eG~dvl~ 160 (176)
T cd01924 82 QPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVT-DGLDILR 160 (176)
T ss_pred CCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEe-cCHHHHH
Confidence 223333221 11122355678999999984 489999998 6889999999999999 9999999
Q ss_pred HHhcC
Q 019630 301 RIARL 305 (338)
Q Consensus 301 kI~~~ 305 (338)
+|+..
T Consensus 161 ~I~~g 165 (176)
T cd01924 161 ELKVG 165 (176)
T ss_pred hhcCC
Confidence 99866
No 25
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.2e-28 Score=231.06 Aligned_cols=149 Identities=23% Similarity=0.357 Sum_probs=121.1
Q ss_pred eEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630 163 GIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETH 242 (338)
Q Consensus 163 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~ 242 (338)
|+|+|+|+.|+|+|+||.+++|.+|.|||+||+..||+.|.||.|..+ +.+|.|||.+.+.||.++|
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~-------------f~aQTGDPtGtG~GG~si~ 67 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRD-------------FTAQTGDPTGTGDGGESIY 67 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeecccc-------------ceeecCCCCCCCCCcceee
Confidence 579999999999999999999999999999999999999999999544 4445555555667777766
Q ss_pred CCcCCC----cCccccC---CCCCceEeeeCCC-----CeEEEEcCCCC-CCCCCceEEEEEEcccHHHHHHHhcCCCCC
Q 019630 243 SITFKE----IPLEVCS---TIRRGSVAWVGSG-----PEFFISLANHN-EWKKVYTVFGIVLPEDMAIAERIARLPTKQ 309 (338)
Q Consensus 243 g~~~~~----i~~E~~~---~~~rG~Vsma~sG-----sqFFItL~d~p-~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~ 309 (338)
+..+.+ ...|.+| |.+.|+|+|+++| |||||||+++- .||++|||||+|+ |||++|.||+..-+++
T Consensus 68 ~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~-EG~dtl~kiNea~vD~ 146 (479)
T KOG0415|consen 68 GVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVA-EGFDTLTKINEAIVDP 146 (479)
T ss_pred eecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehh-hhHHHHHHHHHHhcCC
Confidence 655422 2345554 4579999999964 99999999874 8999999999999 9999999999998887
Q ss_pred c--cccceee---eeeeCCee
Q 019630 310 E--VWSNVNV---SVLEKPIP 325 (338)
Q Consensus 310 ~--~~~~i~v---~vl~~pv~ 325 (338)
+ +|.+|.| .||.+|+.
T Consensus 147 ~~rPykdIRI~HTiiLdDPFd 167 (479)
T KOG0415|consen 147 KNRPYKDIRIKHTIILDDPFD 167 (479)
T ss_pred CCCcccceeeeeeEEecCCCC
Confidence 6 6777653 46667653
No 26
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.4e-27 Score=201.01 Aligned_cols=135 Identities=21% Similarity=0.241 Sum_probs=113.0
Q ss_pred EeeeeEEEEecCCCChHHHHHHHHHHhCCC--------CCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCC
Q 019630 169 TEYGTLHVKLLPDSAPLSVAYMLELLASRH--------CVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGS 238 (338)
Q Consensus 169 T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~--------YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg 238 (338)
++.|+|.||||.|.+|+|++||++.|..-| |+++.||||+.++ |+||.-. +-..|-
T Consensus 22 ~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~--------------gDGtG~ 87 (177)
T KOG0879|consen 22 RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVN--------------GDGTGV 87 (177)
T ss_pred EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceec--------------CCCceE
Confidence 578999999999999999999999997433 9999999996553 5554221 122334
Q ss_pred cccCCCcCCCcCccccCCCCCceEeeeCCC-----CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCcccc
Q 019630 239 LETHSITFKEIPLEVCSTIRRGSVAWVGSG-----PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWS 313 (338)
Q Consensus 239 ~~~~g~~~~~i~~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~ 313 (338)
.++|+.+|+++ +..++|..+|+|+|||+| .||||+.+...+||++|+|||+|+ +||.++++|+++|+.++..|
T Consensus 88 ~sIy~~~F~DE-NFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvl-dGlli~rkIEnvp~G~NnkP 165 (177)
T KOG0879|consen 88 ASIYGSTFPDE-NFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVL-DGLLIMRKIENVPTGPNNKP 165 (177)
T ss_pred EEEcCCCCCCc-ceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeee-hhhhhhhhhhcCCCCCCCCC
Confidence 56889999876 777899999999999976 699999999999999999999999 99999999999999998877
Q ss_pred ceeeee
Q 019630 314 NVNVSV 319 (338)
Q Consensus 314 ~i~v~v 319 (338)
+..|.|
T Consensus 166 Kl~v~i 171 (177)
T KOG0879|consen 166 KLPVVI 171 (177)
T ss_pred CCcEEE
Confidence 755544
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-25 Score=204.18 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=112.7
Q ss_pred EEeeeeEEEEecCCCChHHHHHHHHHHh--CCC-CCCcEEEEeeeCC--ccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630 168 ETEYGTLHVKLLPDSAPLSVAYMLELLA--SRH-CVGCQFHRAESRG--THWDTEGNHIENAPGGYGPPFALIQGSLETH 242 (338)
Q Consensus 168 ~T~~G~I~IeL~~d~AP~tv~nFl~L~~--~g~-YdG~~F~Rv~~~~--q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~ 242 (338)
+-..|+|+++|..|..|+|++||..||. .|| |.|++||||++.+ |+||.+.. ...||.++|
T Consensus 147 ~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~--------------ngtggksiy 212 (298)
T KOG0111|consen 147 EDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNG--------------NGTGGKSIY 212 (298)
T ss_pred ccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccC--------------CCCCCcccc
Confidence 4567999999999999999999999995 677 9999999998886 88886644 456888999
Q ss_pred CCcCCCcCccccCCCCCceEeeeCCC-----CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCc
Q 019630 243 SITFKEIPLEVCSTIRRGSVAWVGSG-----PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQE 310 (338)
Q Consensus 243 g~~~~~i~~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~ 310 (338)
|..|.++ +..+.|.-+|+|+|||+| |||||++....+||++|+|||.|+ +||+||++|++..+.+.
T Consensus 213 gkkfdde-nf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~-eg~~vvrq~e~qgsksg 283 (298)
T KOG0111|consen 213 GKKFDDE-NFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVV-EGMNVVRQVEQQGSKSG 283 (298)
T ss_pred ccccccc-ceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeec-chHHHHHHHHhccCCCC
Confidence 9999766 778889999999999964 999999999999999999999999 99999999999877653
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9e-18 Score=149.37 Aligned_cols=127 Identities=21% Similarity=0.244 Sum_probs=104.8
Q ss_pred EEeeeeEEEEecCCCChHHHHHHHHHHh--CCC-CCCcEEEEeeeC---C--ccccCCCCcccCCCCccCCCccccCCCc
Q 019630 168 ETEYGTLHVKLLPDSAPLSVAYMLELLA--SRH-CVGCQFHRAESR---G--THWDTEGNHIENAPGGYGPPFALIQGSL 239 (338)
Q Consensus 168 ~T~~G~I~IeL~~d~AP~tv~nFl~L~~--~g~-YdG~~F~Rv~~~---~--q~GDp~g~~ik~~~~~~G~p~~liqGg~ 239 (338)
..+.|++.++||.|..|+|++||..|+. .++ |.+..|||++.. + |+||.+.. ...|+-
T Consensus 14 ~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~h--------------ngtggk 79 (167)
T KOG0865|consen 14 GEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCH--------------NGTGGK 79 (167)
T ss_pred CccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCccccc--------------CCccce
Confidence 3678899999999999999999998885 333 999999994333 2 66665432 346777
Q ss_pred ccCCCcCCCcCccccCCCCCceEeeeCCC-----CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCc
Q 019630 240 ETHSITFKEIPLEVCSTIRRGSVAWVGSG-----PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQE 310 (338)
Q Consensus 240 ~~~g~~~~~i~~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~ 310 (338)
++|+..|.++ +..++|..+|.|+|||+| |||||+++...+||++|+|||+|. +||+++++|+....+..
T Consensus 80 Siy~ekF~De-nFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~-eGm~iv~a~e~~gs~~g 153 (167)
T KOG0865|consen 80 SIYGEKFDDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVK-EGMDIVEAMERFGSRNG 153 (167)
T ss_pred EecccccCCc-CcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceE-cccchhhhhhccCCcCC
Confidence 8899888665 777888889999999964 899999999899999999999999 99999999998655543
No 29
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=98.23 E-value=5.8e-07 Score=63.41 Aligned_cols=51 Identities=27% Similarity=0.555 Sum_probs=19.4
Q ss_pred cccccccccccccccccCHHHHHHHhhhhccCCCCCCCcceeEEcCCCCCCCCccceeEee
Q 019630 73 LELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLK 133 (338)
Q Consensus 73 ~e~~g~~v~~g~~~~~~sa~~cc~aC~~~~~~~~~~~~cn~WV~c~~~~~c~~~~~ecWlK 133 (338)
+||.|..+.+. .....|+++|+.+|.+.. .|..|+|.+. ++.+..+.||||
T Consensus 1 ~d~~G~dl~~~-~~~~~s~~~C~~~C~~~~-------~C~~~~~~~~--~~~~~~~~C~LK 51 (51)
T PF14295_consen 1 TDYPGGDLRSF-PVTASSPEECQAACAADP-------GCQAFTFNPP--GCPSSSGRCYLK 51 (51)
T ss_dssp ------------------HHHHHHHHHTST-------T--EEEEETT--EE----------
T ss_pred Ccccccccccc-cccCCCHHHHHHHccCCC-------CCCEEEEECC--CcccccccccCC
Confidence 57889998887 448999999999999886 9999999996 344467899998
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.64 E-value=0.0053 Score=63.06 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=67.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHhCCCCC----CcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccCCCcCCC
Q 019630 173 TLHVKLLPDSAPLSVAYMLELLASRHCV----GCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKE 248 (338)
Q Consensus 173 ~I~IeL~~d~AP~tv~nFl~L~~~g~Yd----G~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~g~~~~~ 248 (338)
.+.+||.++ ||.++++|+.+.++|.+. -..|-+- ..+|| -.
T Consensus 202 y~evE~~~~-~p~s~EH~la~~~~G~~~Vd~~tsTfi~d-------------------------~~L~g---------~~ 246 (503)
T TIGR03268 202 YVEVELDPN-APVSVEHFLALMEDGTFRVDYRTSTFISD-------------------------DSLRG---------LD 246 (503)
T ss_pred EEEEEEcCC-CChhHHHHHHHHhCCeEEEeeeecceEec-------------------------ccccC---------cc
Confidence 477787665 999999999999998732 1111111 02222 13
Q ss_pred cCccccCCCCCceEeeeCCC---CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcC
Q 019630 249 IPLEVCSTIRRGSVAWVGSG---PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARL 305 (338)
Q Consensus 249 i~~E~~~~~~rG~Vsma~sG---sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~ 305 (338)
+|.|....-++|+|.+-+.| -..||+-.+.+. .-.|+|+|+|+ .||++++--+..
T Consensus 247 ~p~En~~~R~rGtVTVRn~G~G~G~VYIYredr~s-s~sHtvVG~V~-~GiELid~a~~G 304 (503)
T TIGR03268 247 KPEENIEKRRRGAVTVRNSGVGEGRVYIYREDRPS-SLSHNVVGHVT-RGIELIDIAQEG 304 (503)
T ss_pred CCccccCcccceeEEEEeeccCceeEEEEcCCCCC-CcccceeEEEe-cceeeeecccCC
Confidence 44555555679999999977 389999988543 34699999999 999998655544
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.60 E-value=0.0055 Score=63.10 Aligned_cols=96 Identities=27% Similarity=0.313 Sum_probs=67.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHhCCCCC----CcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccCCCcCCC
Q 019630 173 TLHVKLLPDSAPLSVAYMLELLASRHCV----GCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKE 248 (338)
Q Consensus 173 ~I~IeL~~d~AP~tv~nFl~L~~~g~Yd----G~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~g~~~~~ 248 (338)
.+.++|.++ ||.++++|+.+.++|.+. -.+|-+- ..+||. .
T Consensus 205 y~eve~~~~-~p~s~EH~la~~~~G~f~Vd~~tstfI~d-------------------------~~L~g~---------~ 249 (508)
T PRK00969 205 YVEVELDPG-APKSVEHFLALLEDGTFEVDFETSTFIAD-------------------------DRLQGL---------K 249 (508)
T ss_pred EEEEEEcCC-CCchHHHHHHHHhCCeEEEeeeecceEee-------------------------ccccCc---------c
Confidence 467788766 999999999999998732 1222111 022321 3
Q ss_pred cCccccCCCCCceEeeeCCC---CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcC
Q 019630 249 IPLEVCSTIRRGSVAWVGSG---PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARL 305 (338)
Q Consensus 249 i~~E~~~~~~rG~Vsma~sG---sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~ 305 (338)
+|.|....-++|+|.+-+.| -..||+-.+.+. .-.|+|+|+|+ .||++++--...
T Consensus 250 ~p~En~~~R~~GtVTVRt~G~g~G~vYIyredr~s-s~sHtvVG~V~-~GiELi~~a~~G 307 (508)
T PRK00969 250 IPEENFEPRRRGTVTVRTAGVGVGKVYIYREDRPS-SLSHTVVGRVT-HGIELIDFAKEG 307 (508)
T ss_pred CCccccCccccceEEEEeeccCceeEEEECCCCCC-CccceeEEEEe-cceeeeecccCC
Confidence 34455555679999999977 389999988553 34699999999 999998655444
No 32
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=96.11 E-value=0.01 Score=45.45 Aligned_cols=59 Identities=19% Similarity=0.470 Sum_probs=44.9
Q ss_pred ceeeee-ecccccccccccccccccCHHHHHHHhhhhccCCCCCCCcceeEEcCCCCCCCCccceeEeecCCCCCCC
Q 019630 66 CCRGIE-HLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKKQKDALEP 141 (338)
Q Consensus 66 ~c~~~~-~~e~~g~~v~~g~~~~~~sa~~cc~aC~~~~~~~~~~~~cn~WV~c~~~~~c~~~~~ecWlK~~~~~~~P 141 (338)
.|.... +++|+|.-+. .....++.+|+++|.+.+ .|..|.|=.. .+.||||.....+.+
T Consensus 4 ~C~~~~~~~~~~g~d~~---~~~~~s~~~Cq~~C~~~~-------~C~afT~~~~-------~~~C~lk~~~~~~~~ 63 (73)
T cd01100 4 SCFRQGSNVDFRGGDLS---TVFASSAEQCQAACTADP-------GCLAFTYNTK-------SKKCFLKSSEGTLTK 63 (73)
T ss_pred ccccccCCCccccCCcc---eeecCCHHHHHHHcCCCC-------CceEEEEECC-------CCeEEcccCCCCccc
Confidence 455544 8999997765 334789999999999997 9999999654 368899999754333
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.066 Score=53.86 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=64.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHhCCCC----CCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccCCCcCCC
Q 019630 173 TLHVKLLPDSAPLSVAYMLELLASRHC----VGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKE 248 (338)
Q Consensus 173 ~I~IeL~~d~AP~tv~nFl~L~~~g~Y----dG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~g~~~~~ 248 (338)
.+.++|.++ +|+++++|++|.+.|-+ .-..|--. ..+| +.+
T Consensus 204 y~eve~s~n-sP~saEH~lalmedG~lri~~~tntfis~-------------------------~~lq---------~~~ 248 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTFISD-------------------------DTLQ---------EEK 248 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhcceEEEEEeccceeec-------------------------cccc---------ccc
Confidence 467888766 99999999999998852 11122111 0112 123
Q ss_pred cCccccCCCCCceEeeeCCC---CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcC
Q 019630 249 IPLEVCSTIRRGSVAWVGSG---PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARL 305 (338)
Q Consensus 249 i~~E~~~~~~rG~Vsma~sG---sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~ 305 (338)
+|.|....-.||.|..-|-| -.-||+-.+.+.- -.|+|.|+|+ +||++++--...
T Consensus 249 ~~~en~d~RerG~iTvRn~GvgeGrvYIyRedR~ss-~sHnvVGrV~-eGiELid~a~eG 306 (512)
T COG4070 249 VPEENFDLRERGAITVRNVGVGEGRVYIYREDRPSS-LSHNVVGRVI-EGIELIDLAEEG 306 (512)
T ss_pred CChhhhhhhhcceEEEEeeecccceEEEEecCCCCc-cccceeeeee-cceEEEEecccC
Confidence 33444444469999999855 5899998875532 4699999999 999998765554
No 34
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=93.94 E-value=0.12 Score=40.69 Aligned_cols=52 Identities=19% Similarity=0.448 Sum_probs=43.3
Q ss_pred eecccccccccccccccccCHHHHHHHhhhhccCCCCCCCcceeEEcCCCCCCCCccceeEeecCC
Q 019630 71 EHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKKQK 136 (338)
Q Consensus 71 ~~~e~~g~~v~~g~~~~~~sa~~cc~aC~~~~~~~~~~~~cn~WV~c~~~~~c~~~~~ecWlK~~~ 136 (338)
++++|.|.-++ .-...++.+|+..|.... .|-.|-|=...... ..||||...
T Consensus 7 ~~~df~G~Dl~---~~~~~~~~~Cq~~Ct~~~-------~C~~FTf~~~~~~~----~~C~LK~s~ 58 (79)
T smart00223 7 KNVDFRGSDIN---TVYVPSAQVCQKRCTSHP-------RCLFFTFSTNEPPE----EKCLLKDSV 58 (79)
T ss_pred cCccccCceee---eeecCCHHHHHHhhcCCC-------CccEEEeeCCCCCC----CEeEeCcCC
Confidence 67888888776 457899999999999886 99999999888644 278999884
No 35
>PRK00969 hypothetical protein; Provisional
Probab=93.86 E-value=0.34 Score=50.30 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=70.9
Q ss_pred ceEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCccc
Q 019630 162 EGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLET 241 (338)
Q Consensus 162 ~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~ 241 (338)
.....+.|+.|.|+|+|. .+..++..+++-.+. |.|...+-.... .+.||+=
T Consensus 50 ~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~--------------~vAfGp~---------- 101 (508)
T PRK00969 50 TKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRS--------------AVAFGPF---------- 101 (508)
T ss_pred cceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEecccc--------------ceeEccc----------
Confidence 467889999999999999 556667777766543 455555544111 0112210
Q ss_pred CCCcCCCcCccccC-CCCCceEeeeCCC-----CeEEEEcCCCCCCCCC--ceEEEEEEcccHHHHHHHhcCCCC
Q 019630 242 HSITFKEIPLEVCS-TIRRGSVAWVGSG-----PEFFISLANHNEWKKV--YTVFGIVLPEDMAIAERIARLPTK 308 (338)
Q Consensus 242 ~g~~~~~i~~E~~~-~~~rG~Vsma~sG-----sqFFItL~d~p~ldg~--ytVFG~Vi~eGmdvLdkI~~~~t~ 308 (338)
-.++..+..+ .+.++.|.+.-+| +.+.|+..++..--|- --+||+|+ .|..+|++|...+.-
T Consensus 102 ----~s~l~p~~~~~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi-~Gk~vl~~L~~~D~I 171 (508)
T PRK00969 102 ----ESDLEPSREEYEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVV-GGKRVLDRLTDGDRI 171 (508)
T ss_pred ----ccCcccccCcceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEc-cchhhHhhccCCCeE
Confidence 0111111111 2468888888766 5666666666532221 27999999 999999999876654
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.17 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHh
Q 019630 173 TLHVKLLPDSAPLSVAYMLELLA 195 (338)
Q Consensus 173 ~I~IeL~~d~AP~tv~nFl~L~~ 195 (338)
-|.||||.+.||+++.+|.++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 49999999999999999999875
No 37
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=92.93 E-value=0.79 Score=47.53 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=72.8
Q ss_pred CceEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcc
Q 019630 161 GEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLE 240 (338)
Q Consensus 161 ~~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~ 240 (338)
......+.|+.|.|+|+|-+ +..+++.|++..+. |.|...|-.... .+.||+ +
T Consensus 45 ~~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~--------------~vAfGp--------~- 97 (503)
T TIGR03268 45 ETKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQ--------------EVAFGP--------F- 97 (503)
T ss_pred ccceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchh--------------heeeCc--------c-
Confidence 35678899999999999993 66677777766543 455555444111 001211 0
Q ss_pred cCCCcCCCcCccccC-CCCCceEeeeCCC-----CeEEEEcCCCCCCC---CCceEEEEEEcccHHHHHHHhcCCCC
Q 019630 241 THSITFKEIPLEVCS-TIRRGSVAWVGSG-----PEFFISLANHNEWK---KVYTVFGIVLPEDMAIAERIARLPTK 308 (338)
Q Consensus 241 ~~g~~~~~i~~E~~~-~~~rG~Vsma~sG-----sqFFItL~d~p~ld---g~ytVFG~Vi~eGmdvLdkI~~~~t~ 308 (338)
-.++.....+ .+.++.|.+.-+| +.+.|+..++...- ..--+||+|+ .|..+|++|...+.-
T Consensus 98 -----~sdl~p~~~~~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi-~Gk~vl~~L~~~D~I 168 (503)
T TIGR03268 98 -----PSDLEPSREPSEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVV-GGKRVIDRLSDGDQI 168 (503)
T ss_pred -----cCCccccCCcceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEc-cchhhHhhccCCCeE
Confidence 0111111111 2468888888766 67778877776322 2467999999 999999999876643
No 38
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=91.11 E-value=0.65 Score=40.98 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHHH
Q 019630 173 TLHVKLLPDSAPLSVAYMLELL 194 (338)
Q Consensus 173 ~I~IeL~~d~AP~tv~nFl~L~ 194 (338)
.++.+|..|.||+||+.|.++.
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH-
T ss_pred EEEEEEcccCChHHHHHHHHhC
Confidence 7889999999999999999987
No 39
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=0.28 Score=50.32 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=91.2
Q ss_pred CCceEEEEEEeee----eEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeC--CccccCCCCcccCCCCccCCCcc
Q 019630 160 KGEGIVRLETEYG----TLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESR--GTHWDTEGNHIENAPGGYGPPFA 233 (338)
Q Consensus 160 ~~~~~V~l~T~~G----~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~--~q~GDp~g~~ik~~~~~~G~p~~ 233 (338)
.-...+.+.|..| -|.|+|+.+-.|.-++-|..+|+.+|+++.+|.||... .|.||.--. +|
T Consensus 96 ~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS---------iD--- 163 (558)
T KOG0882|consen 96 DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS---------ID--- 163 (558)
T ss_pred cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee---------cc---
Confidence 3345677788888 89999999999999999999999999999999998544 244443211 00
Q ss_pred ccCCCcccCCC--cCCCcCccc--cCCCCCceEeeeC-----CCCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhc
Q 019630 234 LIQGSLETHSI--TFKEIPLEV--CSTIRRGSVAWVG-----SGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIAR 304 (338)
Q Consensus 234 liqGg~~~~g~--~~~~i~~E~--~~~~~rG~Vsma~-----sGsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~ 304 (338)
..|-.+-|.. .|+....+. ...+..-++.... .+-+|++.-..-+.+..+..|||++. ++-++++.|..
T Consensus 164 -~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~-KtGklvqeiDE 241 (558)
T KOG0882|consen 164 -ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF-KTGKLVQEIDE 241 (558)
T ss_pred -ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe-ccchhhhhhhc
Confidence 1111111211 111110110 1112233333333 23488888888888889999999999 99999999999
Q ss_pred CCCCCc
Q 019630 305 LPTKQE 310 (338)
Q Consensus 305 ~~t~~~ 310 (338)
.+++..
T Consensus 242 ~~t~~~ 247 (558)
T KOG0882|consen 242 VLTDAQ 247 (558)
T ss_pred cchhhh
Confidence 888765
No 40
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=86.24 E-value=4 Score=34.50 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=60.6
Q ss_pred eEEEEEEeeeeEEEEecCCCChHHHHHHHHHHh----CCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCC
Q 019630 163 GIVRLETEYGTLHVKLLPDSAPLSVAYMLELLA----SRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGS 238 (338)
Q Consensus 163 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~----~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg 238 (338)
+.+.|+.....+.++|+.. .|++.|++..- ...|- .-+|--. |..+.
T Consensus 1 mkI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g-~E~y~~~----------------------p~~l~--- 51 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWG-NEKYFSL----------------------PLKLP--- 51 (120)
T ss_dssp EEEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECT-TEEEEE-----------------------S-------
T ss_pred CeEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCC-ceEEEeC----------------------CCCCC---
Confidence 3566777777999999988 78888888652 12232 2332221 00000
Q ss_pred cccCCCcCCCcCccccCCCCCceEeeeCCCCeEEEEcCCCC-------CCCCCceEEEEEEcccHHHHHHHhc
Q 019630 239 LETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHN-------EWKKVYTVFGIVLPEDMAIAERIAR 304 (338)
Q Consensus 239 ~~~~g~~~~~i~~E~~~~~~rG~Vsma~sGsqFFItL~d~p-------~ldg~ytVFG~Vi~eGmdvLdkI~~ 304 (338)
...........|.|+.-..|.-|-|.+++.| ..-....++|+|+ +|++.++++..
T Consensus 52 ----------~~~~~~~~~~~GDi~Yw~pg~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~-~~~~~l~~~~~ 113 (120)
T PF04126_consen 52 ----------TEENPRSSVEAGDIAYWPPGGALAIFYGDTPISEGGEIRPASPVNVLGRIV-SDLENLKEVKG 113 (120)
T ss_dssp -----------SSSEESSB-TTEEEEECCCTEEEEESS--TT--TTSB--SSSEEEEEEEE-C-GGGGGG--T
T ss_pred ----------cccCccccccCceEEEeCCCCEEEEEecCcccccccccccCCcceEEEEEC-CCHHHHhhCCC
Confidence 0001112346999999998989999998875 4556789999999 99988877654
No 41
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=61.21 E-value=8.2 Score=32.37 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=63.2
Q ss_pred ceEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCccc
Q 019630 162 EGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLET 241 (338)
Q Consensus 162 ~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~ 241 (338)
++.+.+.-.-|.-+++|+... |.+|..+..-+ .|--. ..-+|.-.+.
T Consensus 3 ~MRiri~fEsg~c~~eL~ee~-pE~vr~i~d~l--------Pies~-----------------an~WgeEiYF------- 49 (126)
T COG2164 3 TMRIRITFESGHCTGELDEEN-PESVRRIYDSL--------PIESR-----------------ANLWGEEIYF------- 49 (126)
T ss_pred eEEEEEEEecceEEEEccccC-hHHHHHHHHhC--------Cchhh-----------------hhhccceEEe-------
Confidence 467777777799999999887 99988765432 11111 0012111110
Q ss_pred CCCcCCCcCccccC--CCCCceEeeeCCCCeEEEEcCCCCCCCCC------ceEEEEEEcccHHHHHHHhcCC
Q 019630 242 HSITFKEIPLEVCS--TIRRGSVAWVGSGPEFFISLANHNEWKKV------YTVFGIVLPEDMAIAERIARLP 306 (338)
Q Consensus 242 ~g~~~~~i~~E~~~--~~~rG~Vsma~sGsqFFItL~d~p~ldg~------ytVFG~Vi~eGmdvLdkI~~~~ 306 (338)
.+.-++..+..+ ....|.|+.-..|--.-+.++..|--|.+ -.|+|+++ ++|+.+.++..++
T Consensus 50 --~tpv~v~k~ENp~dvve~GDv~YWpPGkAlClFFGkTpmsddkiqPaSaVNvIGrIv-~~lE~lk~v~dGe 119 (126)
T COG2164 50 --DTPVDVDKYENPSDVVEPGDVSYWPPGKALCLFFGKTPMSDDKIQPASAVNVIGRIV-KNLELLKSVDDGE 119 (126)
T ss_pred --ecccchhhccCcccccCcccccccCCCcEEEEEecCCcCcccccCccchHHHHHHHH-hhHHhhhcccCCc
Confidence 000112222222 23688888887775444445555544432 35899999 9999998877654
No 42
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=55.82 E-value=27 Score=25.65 Aligned_cols=53 Identities=25% Similarity=0.505 Sum_probs=40.7
Q ss_pred eeecccccccccccccccccCHHHHHHHhhhhccCCCCCCC-cceeEEcCCCCCCCCccceeEeecCCCCC
Q 019630 70 IEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCS-CDSWVFCGDKQACGSRFGECWLKKQKDAL 139 (338)
Q Consensus 70 ~~~~e~~g~~v~~g~~~~~~sa~~cc~aC~~~~~~~~~~~~-cn~WV~c~~~~~c~~~~~ecWlK~~~~~~ 139 (338)
.++..|.|.+++ ...+.|..+|.+.|.... . |-.+.|-... +.|=|+......
T Consensus 7 ~~~~~l~~~~~~---~~~v~s~~~C~~~C~~~~-------~~C~s~~y~~~~-------~~C~L~~~~~~~ 60 (79)
T PF00024_consen 7 IPGYRLSGHSIK---EINVPSLEECAQLCLNEP-------RRCKSFNYDPSS-------KTCYLSSSDRSS 60 (79)
T ss_dssp EEEEEEESCEEE---EEEESSHHHHHHHHHHST-------T-ESEEEEETTT-------TEEEEECSSSSS
T ss_pred ECCEEEeCCcce---EEcCCCHHHHHhhcCcCc-------ccCCeEEEECCC-------CEEEEcCCCCCc
Confidence 456677775533 236789999999999986 5 9999999986 577998886544
No 43
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=46.02 E-value=30 Score=25.90 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCCcchhhHHHHHHHHHhhhHHHHHHhhhhcccc
Q 019630 5 QTDSELSRLAVLIIFVLGCISFFMFYFCFSVGYK 38 (338)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (338)
..|+-.-|.+.+++++++.. -.++|+++..++.
T Consensus 25 gid~~~vRl~~v~l~~~~~~-~~l~Y~~~w~~lP 57 (61)
T PF04024_consen 25 GIDPTLVRLIFVVLTFFTGG-GILLYLILWLLLP 57 (61)
T ss_pred CcCHHHHHHHHHHHHHHHhH-HHHHHHHHHHHcC
Confidence 45778889999998888765 8999999998884
No 44
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=33.47 E-value=24 Score=25.21 Aligned_cols=14 Identities=43% Similarity=0.835 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhHHH
Q 019630 14 AVLIIFVLGCISFF 27 (338)
Q Consensus 14 ~~~~~~~~~~~~~~ 27 (338)
-+|.||++|+||-.
T Consensus 6 sllLlfflG~ISlS 19 (46)
T PF03032_consen 6 SLLLLFFLGTISLS 19 (46)
T ss_pred HHHHHHHHHHcccc
Confidence 36778888888743
No 45
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.64 E-value=26 Score=29.70 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=5.7
Q ss_pred CCCCCCc-EEEEe
Q 019630 196 SRHCVGC-QFHRA 207 (338)
Q Consensus 196 ~g~YdG~-~F~Rv 207 (338)
.|+|+.. .||..
T Consensus 75 ~g~Yd~~g~~~~~ 87 (130)
T PF12273_consen 75 PGYYDQQGNFHPN 87 (130)
T ss_pred CCCCCCCCCCCCC
Confidence 4556543 44443
No 46
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=31.72 E-value=49 Score=26.39 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=22.6
Q ss_pred cchhhHHHHHHHHHhhhHHHHHHhhhhccccC
Q 019630 8 SELSRLAVLIIFVLGCISFFMFYFCFSVGYKP 39 (338)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (338)
.+-.-.+.++++..|+ --.+.|+|||++.+-
T Consensus 40 a~d~l~a~~iI~~~gv-~~~~ly~ffs~Ltkl 70 (84)
T PRK13718 40 ADDMLAAVFVILYSGV-LLFILYFFFSALTKL 70 (84)
T ss_pred hhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 3445567777777766 677889999998854
No 47
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=30.33 E-value=34 Score=34.36 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=33.1
Q ss_pred CCCceEeeeCCC-----CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcC
Q 019630 257 IRRGSVAWVGSG-----PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARL 305 (338)
Q Consensus 257 ~~rG~Vsma~sG-----sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~ 305 (338)
..+|.|.+.|.. -|.-|++.+.|. |++..|.|+|.++.|.+|+-|...
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~g 350 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKPG 350 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--TT
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCCC
Confidence 469999999964 599999999655 889999999999999999988743
No 48
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=29.95 E-value=53 Score=21.23 Aligned_cols=17 Identities=35% Similarity=0.839 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhHHHHHHhhhh
Q 019630 14 AVLIIFVLGCISFFMFYFCFS 34 (338)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~ 34 (338)
++|+++++|- +||++|.
T Consensus 9 ~llv~lLl~Y----LvYAL~n 25 (29)
T PRK14750 9 ALLVLLLLGY----LVYALFN 25 (29)
T ss_pred HHHHHHHHHH----HHHHHcC
Confidence 4566666654 7777764
No 49
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=28.45 E-value=59 Score=26.07 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHhhhHHHHHHhhhhcccc
Q 019630 10 LSRLAVLIIFVLGCISFFMFYFCFSVGYK 38 (338)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (338)
--|.+.++.+|+.+ +..-+|+++|++.+
T Consensus 25 ~~R~~vvl~ml~~f-a~l~ly~~~~ai~~ 52 (85)
T PF13150_consen 25 KQRLRVVLVMLVLF-AALCLYMTVSAIYD 52 (85)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34555555555545 66778999999886
No 50
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=25.58 E-value=1.2e+02 Score=21.86 Aligned_cols=10 Identities=0% Similarity=0.228 Sum_probs=6.0
Q ss_pred hccccCCCCC
Q 019630 34 SVGYKPSTSH 43 (338)
Q Consensus 34 ~~~~~~~~~~ 43 (338)
..+||.++.|
T Consensus 34 qilfr~~~~s 43 (54)
T PF06716_consen 34 QILFRNNPQS 43 (54)
T ss_pred HHHHccCCCc
Confidence 3567766554
No 51
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.78 E-value=59 Score=27.76 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=18.6
Q ss_pred HHHHHHHhhhHHHHHHhhhhcccc
Q 019630 15 VLIIFVLGCISFFMFYFCFSVGYK 38 (338)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~ 38 (338)
.|-+.+...|||.+||..++..+|
T Consensus 68 ~l~iv~f~~issgIvy~y~~~~~~ 91 (129)
T KOG3415|consen 68 FLGIVLFLGISSGIVYLYYANFLK 91 (129)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh
Confidence 344444457899999999999997
No 52
>PF11100 TrbE: Conjugal transfer protein TrbE ; InterPro: IPR020150 TrbE is encoded by the F-plasmid and is located between traN and traF. The product of trbE is a small, integral, inner membrane protein. Mutation of trbE by insertional mutagenesis suggests that TrbE is not essential for F transfer from Escherichia coli (strain K12) under standard mating conditions [].
Probab=22.92 E-value=1.1e+02 Score=23.39 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHHhhhHHHHHHhhhhcccc
Q 019630 9 ELSRLAVLIIFVLGCISFFMFYFCFSVGYK 38 (338)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (338)
+-.-.+.++++.+|+ .-.+.|+|||++-+
T Consensus 33 ~d~l~a~~~I~~~g~-~~~~~y~ffs~Lt~ 61 (66)
T PF11100_consen 33 SDILEAVFFILASGF-MLFILYCFFSALTK 61 (66)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 334556677777777 58889999998764
No 53
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=21.97 E-value=1.8e+02 Score=20.89 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=32.3
Q ss_pred eecccccccccccccccccCHHHHHHHhhh-hccCCCCCCCcceeEEcCCCCCCCCccceeEeec
Q 019630 71 EHLELWGDAVKWGANFKVNSSKECCMACKD-TCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKK 134 (338)
Q Consensus 71 ~~~e~~g~~v~~g~~~~~~sa~~cc~aC~~-~~~~~~~~~~cn~WV~c~~~~~c~~~~~ecWlK~ 134 (338)
++..|.+.+... ....+..+|=+.|.+ -+ .|-.-.|=. .-+.|||+.
T Consensus 10 ~~~~l~~~~~~~---~~~~s~~~C~~~C~~~~~-------~C~s~~y~~-------~~~~C~l~~ 57 (78)
T smart00473 10 PNTKLPGFSRIV---ISVASLEECASKCLNSNC-------SCRSFTYNN-------GTKGCLLWS 57 (78)
T ss_pred cCccCCCCccee---EcCCCHHHHHHHhCCCCC-------ceEEEEEcC-------CCCEEEEee
Confidence 455555444332 346799999999998 44 888877754 146899999
No 54
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=21.12 E-value=1.4e+02 Score=20.59 Aligned_cols=26 Identities=12% Similarity=0.223 Sum_probs=19.2
Q ss_pred cchhhHHHHHHHHHhhhHHHHHHhhh
Q 019630 8 SELSRLAVLIIFVLGCISFFMFYFCF 33 (338)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (338)
|+.+|=.+|=+|+.|+++-.+..++.
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a~~~ly 29 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPAGGMLY 29 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhHHHHHHHHhh
Confidence 67788889999999998887766543
Done!