BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019632
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|B Chain B, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|C Chain C, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|D Chain D, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
Length = 314
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 159/279 (56%), Gaps = 6/279 (2%)
Query: 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGV 82
P K+I+D DPGIDD++ I +A PE+E+L +TT+ GN + E T+NA + ++AG GV
Sbjct: 2 PRKIILDCDPGIDDAVAIFLAHGNPEIELLAITTVVGNQSLEKVTQNARLVADVAGIVGV 61
Query: 83 PVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD-KNASEFLVDKV-SEYPGE 140
PVA G +PL G R A HG GMGN+S P K D ++A + ++D + S P
Sbjct: 62 PVAAGCTKPLVRGV-RNASHIHGETGMGNVSYPPEFKTKLDGRHAVQLIIDLIMSHEPKT 120
Query: 141 VSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVV 200
++++ G LTN+A+A++ + +VK +V++GG + GN +P AE N++ DPEAA +V
Sbjct: 121 ITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGGYHT-GNASPVAEFNVFIDPEAAHIV 179
Query: 201 FTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIF 260
F N+ +VG+++T T A +R+ + + + FY + K +G
Sbjct: 180 FNESWNVTMVGLDLTHLALATPAVQKRVREVGTKPAAFMLQILDFYTKVYEKEHDTYG-K 238
Query: 261 LHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMD 298
+HDP + ++ P + T ++ V +E G + G T+ D
Sbjct: 239 VHDPCAVAYVIDPTVMTTERVPVDIELNGALTTGMTVAD 277
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|B Chain B, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|C Chain C, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|D Chain D, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
Length = 312
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 151/275 (54%), Gaps = 4/275 (1%)
Query: 26 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 85
+++D DPG DD++ I++A +PEL++ +T+ GN T E RN L + + +PVA
Sbjct: 6 ILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVA 65
Query: 86 EGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 145
G+ +PL + +A+ HG G+ +L P + A E + + E V+I++
Sbjct: 66 GGAVKPLMR-ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVS 124
Query: 146 LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 205
GP TN+AL + SK+ IV++GGA LGN PAAE NIY DPEAA++VF SG
Sbjct: 125 TGPQTNVALLLNSHPELHSKIARIVIMGGAM-GLGNWTPAAEFNIYVDPEAAEIVFQSGI 183
Query: 206 NIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSD-GVHGIFLHDP 264
+ + G+++T + ++ D R ++ ++ F+ ++H G G LHDP
Sbjct: 184 PVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDP 243
Query: 265 VSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMD 298
+ L++P+LFT + V VETQG G T++D
Sbjct: 244 CTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVD 278
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside
Hydrolase Ybek With Bound Ribose
Length = 322
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 151/275 (54%), Gaps = 4/275 (1%)
Query: 26 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 85
+++D DPG DD++ I++A +PEL++ +T+ GN T E RN L + + +PVA
Sbjct: 16 ILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVA 75
Query: 86 EGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 145
G+ +PL + +A+ HG G+ +L P + A E + + E V+I++
Sbjct: 76 GGAVKPLMR-ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVS 134
Query: 146 LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 205
GP TN+AL + SK+ IV++GGA LGN PAAE NIY DPEAA++VF SG
Sbjct: 135 TGPQTNVALLLNSHPELHSKIARIVIMGGAM-GLGNWTPAAEFNIYVDPEAAEIVFQSGI 193
Query: 206 NIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSD-GVHGIFLHDP 264
+ + G+++T + ++ D R ++ ++ F+ ++H G G LHDP
Sbjct: 194 PVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDP 253
Query: 265 VSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMD 298
+ L++P+LFT + V VETQG G T++D
Sbjct: 254 CTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVD 288
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
Length = 333
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 156/283 (55%), Gaps = 4/283 (1%)
Query: 18 GSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMA 77
GS K+I+D DPG DD++ I+MA + P +++LG+T + GN T + N L +C+
Sbjct: 18 GSHMEKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL 77
Query: 78 GCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY 137
VPV G P+P+ + VA+ HG G+ P + +A ++++D +
Sbjct: 78 EI-NVPVYAGMPQPIMR-QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMAS 135
Query: 138 PGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAA 197
G+++++ +GPL+N+A+A++ + K++ IV++GGA+ GN P+AE NI+ DPEAA
Sbjct: 136 DGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNIFADPEAA 194
Query: 198 DVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVH 257
VVFTSG + ++G+++T Q T + ++ G +L D+ F ++ G+
Sbjct: 195 RVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLA 254
Query: 258 GIFLHDPVSFVALVRPDLFTFKKGVVRVETQ-GICMGHTLMDQ 299
G +HD L+ PD ++ V V+ G C G T+ D+
Sbjct: 255 GGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDE 297
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKN|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
Length = 316
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 156/283 (55%), Gaps = 4/283 (1%)
Query: 18 GSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMA 77
GS K+I+D DPG DD++ I+MA + P +++LG+T + GN T + N L +C+
Sbjct: 1 GSHMEKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL 60
Query: 78 GCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY 137
VPV G P+P+ + VA+ HG G+ P + +A ++++D +
Sbjct: 61 EI-NVPVYAGMPQPIMR-QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMAS 118
Query: 138 PGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAA 197
G+++++ +GPL+N+A+A++ + K++ IV++GGA+ GN P+AE NI+ DPEAA
Sbjct: 119 DGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNIFADPEAA 177
Query: 198 DVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVH 257
VVFTSG + ++G+++T Q T + ++ G +L D+ F ++ G+
Sbjct: 178 RVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLA 237
Query: 258 GIFLHDPVSFVALVRPDLFTFKKGVVRVETQ-GICMGHTLMDQ 299
G +HD L+ PD ++ V V+ G C G T+ D+
Sbjct: 238 GGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDE 280
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|B Chain B, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|C Chain C, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|D Chain D, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
Length = 313
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 154/276 (55%), Gaps = 4/276 (1%)
Query: 25 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 84
K+I+D DPG DD++ I+MA + P +++LG+T + GN T + N L +C+ VPV
Sbjct: 5 KIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI-NVPV 63
Query: 85 AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSIL 144
G P+P+ + VA+ HG G+ P + +A ++++D + G+++++
Sbjct: 64 YAGMPQPIMR-QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLV 122
Query: 145 ALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 204
+GPL+N+A+A++ + K++ IV++GGA+ GN P+AE NI+ DPEAA VVFTSG
Sbjct: 123 PVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNIFADPEAARVVFTSG 181
Query: 205 ANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDP 264
+ ++G+++T Q T + ++ G +L D+ F ++ G+ G +HD
Sbjct: 182 VPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHDA 241
Query: 265 VSFVALVRPDLFTFKKGVVRVETQ-GICMGHTLMDQ 299
L+ PD ++ V V+ G C G T+ D+
Sbjct: 242 TCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDE 277
>pdb|1MAS|A Chain A, Purine Nucleoside Hydrolase
pdb|1MAS|B Chain B, Purine Nucleoside Hydrolase
pdb|2MAS|A Chain A, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|B Chain B, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|C Chain C, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|D Chain D, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
Length = 314
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 166/317 (52%), Gaps = 16/317 (5%)
Query: 25 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 84
K+I+D DPG+DD++ IL+A PE+E+L +TT+ GN T TRNA + ++AG GVP+
Sbjct: 3 KIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPI 62
Query: 85 AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD-KNASEFLVDKV-SEYPGEVS 142
A G +PL K A HG GMG ++ K D ++A ++D V S P ++
Sbjct: 63 AAGCDKPLV-RKIMTAGHIHGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTIT 121
Query: 143 ILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFT 202
++ G LTN+A+A + + +VK +V++GG + GN AE NI DPEAA +VF
Sbjct: 122 LVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHE-GNATSVAEFNIIIDPEAAHIVFN 180
Query: 203 SGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH 262
+ +VG+++T Q T +++ + + ++ +Y + + + +H
Sbjct: 181 ESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAVH 240
Query: 263 DPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWT 321
DP + ++ P + T ++ V +E G + +G T+ D NP + VA
Sbjct: 241 DPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVAD-------FRNPRPEHCHTQVAVK 293
Query: 322 VNVDK----VLNYIKRL 334
++ +K VL+ ++R+
Sbjct: 294 LDFEKFWGLVLDALERI 310
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Pyrimidine- Specific Nucleoside Hydrolase
Length = 311
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 162/312 (51%), Gaps = 9/312 (2%)
Query: 26 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 85
IID D DD +++ + + ++++ +T + GN++ E +NAL E +PV
Sbjct: 4 FIIDCDTAEDDVLSLYLLLKN-NIDVVAVTIVEGNISYEQEVKNALWALEQVNRE-IPVY 61
Query: 86 EGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 145
G+ +PL V E HG G+G++++ P + K +K+A+ ++D +EY GE+ LA
Sbjct: 62 PGANKPLLKNYITV-EKVHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGELEFLA 120
Query: 146 LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 205
+ PLTNLALA D+S K+K + V+GGA F +GN+ P AE NI+ DP+AA +VF +G
Sbjct: 121 ISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNITPVAEFNIWVDPDAAKIVFNAGF 180
Query: 206 NIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPV 265
+I ++ ++ +TD ++ ++ K R +L M YR + ++G D +
Sbjct: 181 DITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKINGHPHPDAI 240
Query: 266 SFVALVRPDLFTF--KKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVN 323
+ + + T K+ VV T I G TL+D R++ W+ + + +N
Sbjct: 241 TTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVD----RFDADTSWSDKPNAEIVYEIN 296
Query: 324 VDKVLNYIKRLL 335
+ I LL
Sbjct: 297 KKSFMEKIYDLL 308
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|B Chain B, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|C Chain C, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|D Chain D, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
Length = 306
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 5/235 (2%)
Query: 25 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 84
K+I+D+D DD++ IL+A + ++LG+T + GNV +NAL E G VPV
Sbjct: 3 KVIVDSDTATDDTIAILLASRF--FQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQDVPV 60
Query: 85 AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSIL 144
GS P+ G R E HGS+GM N + P + ++A + ++ E+ GE+ IL
Sbjct: 61 YLGSQRPILGNW-RTVEEVHGSNGMSNWNYPEPNKRPEKEHAIDAILRLSKEHEGELEIL 119
Query: 145 ALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 204
A+ PLTN+ALA +D S +VK I ++GGA F+ GN P AE N + DPEAA +V +G
Sbjct: 120 AISPLTNIALAYLKDPSVVKRVKKIWIMGGA-FSKGNTTPIAEFNFWVDPEAAKIVLDAG 178
Query: 205 ANIAVVGINITT-QVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHG 258
+I +V + L + D+ + + + ++ K +++ K+ G+ G
Sbjct: 179 FDITIVPWEVAEISGSLNERDWEYISKLNTKLSNFFINVNKTLKEYTTKNQGISG 233
>pdb|3FZ0|A Chain A, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|B Chain B, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|C Chain C, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|D Chain D, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
Length = 360
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 18 GSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMA 77
GS KLIIDTD G DD++ I++A P++E++ +T ++GNV N L ++
Sbjct: 1 GSHMVHRKLIIDTDCGGDDAIAIMLAMTQPDVEVIAITVVWGNVEVNQGMENIGKLLDLY 60
Query: 78 GCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPK--AKKCDKNASEFLVDKVS 135
+P G+ PL G + V GSDG G+ P + A + ++A+ ++ +
Sbjct: 61 DA-DIPFFRGAEGPLVGERETVQWGGFGSDGFGDAGFPPSQRVALQPKRHAALEILKILE 119
Query: 136 E-YPGE---VSILALGPLTNLALAIKRDSSFASK-----VKNIVVLGGAFFALGNVNPAA 186
E P + ++ALGPLTN+ALA++ + SK + IV++ G + GN N AA
Sbjct: 120 EAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDTIPGIVIMNGTSESKGNSNMAA 179
Query: 187 EANIYGDPEAADVVF 201
E N + DPEA VV
Sbjct: 180 EFNSHCDPEAGVVVL 194
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
pdb|2C40|B Chain B, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
Length = 312
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 32/326 (9%)
Query: 25 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 84
K+ + D G+DD +++ + Q +E+ G++ I + E A + + + G + V
Sbjct: 3 KVYFNHDGGVDDLVSLFLLLQMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGKNTIEV 62
Query: 85 AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD----KNASEFLVDKVSEYPGE 140
A + +G P ++ + + + + K K A L++ + + +
Sbjct: 63 AASNS---RGKNPFPKDWRMHAFYVDALPILNESGKVVTHVAAKPAHHHLIETLLQTEEK 119
Query: 141 VSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP-----AAEANIYGDPE 195
++L GPLT+LA A+ +K+K +V +GG F GNV+ AE N + DPE
Sbjct: 120 TTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTAGNVHEPEHDGTAEWNSFWDPE 179
Query: 196 AADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRY--VQLLGDMCKFYRDW-HVK 252
A V+ + I ++ + T QV LT D E + +Y + LG H
Sbjct: 180 AVARVWEANIEIDLITLESTNQVPLT-IDIREQWAKERKYIGIDFLGQCYAIVPPLVHFA 238
Query: 253 SDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTL-MDQGLKRWNVSNPWT 311
+ + +L D ++ + + DL + V T G G T+ D G
Sbjct: 239 KNSTY--YLWDVLTAAFVGKADLAKVQTINSIVHTYGPSQGRTVETDDG----------- 285
Query: 312 GYSPVSVAWTVNVDKVLNYIKRLLMK 337
PV V + VN D+ +YI RL K
Sbjct: 286 --RPVHVVYDVNHDRFFDYITRLAKK 309
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPW|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPX|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
pdb|3EPX|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
Length = 338
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 33/247 (13%)
Query: 18 GSSTNPAKLIIDTDPGIDDSMT-ILMAFQTPELEILGLTTIFGNVTTEDATR-NALTLCE 75
GS+ N +++D D +DD + +L+A T ++ ++G + E+ +C
Sbjct: 11 GSAKN---VVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCL 67
Query: 76 M---AGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGM------GNISLTPP-KAKKCDKN 125
M P P+ + + + A D M N+ L KA+
Sbjct: 68 MHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYE 127
Query: 126 ASEFLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAFFALGNV-- 182
+ L D V +V+I GPL+N+A I K F SKV+ V++GGA GNV
Sbjct: 128 GQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFL 187
Query: 183 ---NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQL 238
+ AE NIY DP +A VF G + ++ T V + + YVQ
Sbjct: 188 PSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV-----------RSPYVQR 236
Query: 239 LGDMCKF 245
G+ F
Sbjct: 237 FGEQTNF 243
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HP0|B Chain B, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HOZ|A Chain A, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|1HOZ|B Chain B, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|2FF1|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF1|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF2|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
pdb|2FF2|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
Length = 339
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 33/247 (13%)
Query: 18 GSSTNPAKLIIDTDPGIDDSMT-ILMAFQTPELEILGLTTIFGNVTTEDATR-NALTLCE 75
GS+ N +++D D +DD + +L+A T ++ ++G + E+ +C
Sbjct: 12 GSAKN---VVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCL 68
Query: 76 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISL--TPPKAKKCDKNASE----- 128
M +P+ P E+ + M ++ + P + DK +E
Sbjct: 69 MHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYE 128
Query: 129 ---FLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAFFALGNV-- 182
L D V +V+I GPL+N+A I K F SKV+ V++GGA GNV
Sbjct: 129 GQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFL 188
Query: 183 ---NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQL 238
+ AE NIY DP +A VF G + ++ T V + + YVQ
Sbjct: 189 PSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV-----------RSPYVQR 237
Query: 239 LGDMCKF 245
G+ F
Sbjct: 238 FGEQTNF 244
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
pdb|3B9G|B Chain B, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
Length = 328
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 33/247 (13%)
Query: 18 GSSTNPAKLIIDTDPGIDDSMT-ILMAFQTPELEILGLTTIFGNVTTEDATR-NALTLCE 75
GS+ N +++D D +DD + +L+A T ++ ++G + E+ +C
Sbjct: 11 GSAKN---VVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCL 67
Query: 76 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISL--TPPKAKKCDKNASE----- 128
M +P+ P E+ + M ++ + P + DK +E
Sbjct: 68 MHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYE 127
Query: 129 ---FLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAFFALGNV-- 182
L D V +V+I GPL+N+A I K F SKV+ V++GGA GNV
Sbjct: 128 GQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFL 187
Query: 183 ---NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQL 238
+ AE NIY DP +A VF G + ++ T V + + YVQ
Sbjct: 188 PSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV-----------RSPYVQR 236
Query: 239 LGDMCKF 245
G+ F
Sbjct: 237 FGEQTNF 243
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1R4F|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 33/247 (13%)
Query: 18 GSSTNPAKLIIDTDPGIDDSMT-ILMAFQTPELEILGLTTIFGNVTTEDATR-NALTLCE 75
GS+ N +++D D +DD + +L+A T ++ ++G + E+ +C
Sbjct: 12 GSAKN---VVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCL 68
Query: 76 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISL--TPPKAKKCDKNASE----- 128
M +P+ P E+ + M ++ + P + DK +E
Sbjct: 69 MHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYE 128
Query: 129 ---FLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAFFALGNV-- 182
L D V +V+I GPL+N+A I K F SKV+ V++GGA GNV
Sbjct: 129 GQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFL 188
Query: 183 ---NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQL 238
+ AE NIY DP +A VF G + ++ T V + + YVQ
Sbjct: 189 PSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV-----------RSPYVQR 237
Query: 239 LGDMCKF 245
G+ F
Sbjct: 238 FGEQTNF 244
>pdb|1KIC|A Chain A, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIC|B Chain B, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIE|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1KIE|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 118 KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAF 176
KA+ + L D V +V+I GPL+N+A I K F SKV+ V++GGA
Sbjct: 121 KAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV 180
Query: 177 FALGNV-----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQ 230
GNV + AE NIY DP +A VF G + ++ T V +
Sbjct: 181 DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV---------- 230
Query: 231 SKGRYVQLLGDMCKF 245
+ YVQ G+ F
Sbjct: 231 -RSPYVQRFGEQTNF 244
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 35 DDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKG 94
D+S T TPEL F V +D LT G P A+ P+PL+
Sbjct: 460 DNSYTTRFIDTTPEL--------FQQVKRQDRATKLLTYLADVTVNGHPEAKDRPKPLEN 511
Query: 95 GKPRVAEFAHGS---DGMGNI--SLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 145
V +A+G+ DG + +L P K + +N L+ + G S+LA
Sbjct: 512 AARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLA 567
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 35 DDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKG 94
D+S T TPEL F V +D LT G P A+ P+PL+
Sbjct: 460 DNSYTTRFIDTTPEL--------FQQVKRQDRATKLLTYLADVTVNGHPEAKDRPKPLEN 511
Query: 95 GKPRVAEFAHGS---DGMGNI--SLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 145
V +A+G+ DG + +L P K + +N L+ + G S+LA
Sbjct: 512 AARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLA 567
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 259 IFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTL------MDQGLKRWNVSNPW 310
I+ + PV V D T+K GV + E + GH + ++ G+ W V+N W
Sbjct: 164 IYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSW 221
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 259 IFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTL------MDQGLKRWNVSNPW 310
I+ + PV V D T+K GV + E + GH + ++ G+ W V+N W
Sbjct: 170 IYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSW 227
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 259 IFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTL------MDQGLKRWNVSNPWT 311
I+ + PV V D T+K GV + E + GH + ++ G+ W V+N W
Sbjct: 226 IYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWN 284
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 256 VHGIFLHDPVSFVALVRPDLFTFKKGVV----------RVETQGICMGHTLMDQGLKRWN 305
V + L++PVSF V D ++KG+ +V + +G+ + G+ W
Sbjct: 125 VEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG-EENGIPYWI 183
Query: 306 VSNPW 310
V N W
Sbjct: 184 VKNSW 188
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 225 FLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIF----------LHDPVSFVALVRPD 274
F+E + Y+ + G R W + +D G+F + +P+ V LV
Sbjct: 370 FMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQ 429
Query: 275 LFTFKKGVVRVETQGICMGHTLMD 298
+ +++ R+E + +T D
Sbjct: 430 MLEYEEPTFRMEYSSLATPNTWFD 453
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 238 LLGDMCKFYRDWHVKSDGVHGIFLHDPVS 266
L G M ++Y +WH+++DG H LHD +
Sbjct: 3 LNGTMMQYY-EWHLENDGQHWNRLHDDAA 30
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 238 LLGDMCKFYRDWHVKSDGVHGIFLHDPVS 266
L G M ++Y +WH+++DG H LHD +
Sbjct: 3 LNGTMMQYY-EWHLENDGQHWNRLHDDAA 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,299,989
Number of Sequences: 62578
Number of extensions: 429773
Number of successful extensions: 1197
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1147
Number of HSP's gapped (non-prelim): 33
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)