Query 019632
Match_columns 338
No_of_seqs 176 out of 1183
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1957 URH1 Inosine-uridine n 100.0 2.1E-86 4.6E-91 619.3 32.9 308 22-337 1-309 (311)
2 PLN02717 uridine nucleosidase 100.0 1E-83 2.2E-88 612.5 35.2 314 24-337 1-315 (316)
3 PRK09955 rihB ribonucleoside h 100.0 1.7E-83 3.7E-88 609.2 35.1 306 22-337 2-308 (313)
4 cd02653 nuc_hydro_3 NH_3: A su 100.0 9.6E-80 2.1E-84 585.8 33.9 304 25-337 1-308 (320)
5 PRK10443 rihA ribonucleoside h 100.0 2.2E-79 4.8E-84 581.5 35.2 306 23-337 2-309 (311)
6 cd02651 nuc_hydro_IU_UC_XIUA n 100.0 2E-79 4.3E-84 580.7 33.0 301 25-335 1-302 (302)
7 PRK10768 ribonucleoside hydrol 100.0 4.6E-79 1E-83 578.1 34.0 300 23-337 2-302 (304)
8 cd02649 nuc_hydro_CeIAG nuc_hy 100.0 1.8E-78 3.9E-83 573.5 33.5 299 24-331 1-305 (306)
9 cd02650 nuc_hydro_CaPnhB NH_hy 100.0 2.3E-78 5.1E-83 573.9 33.3 303 25-332 1-304 (304)
10 PTZ00313 inosine-adenosine-gua 100.0 2.2E-76 4.7E-81 564.1 33.7 302 23-336 2-324 (326)
11 cd02654 nuc_hydro_CjNH nuc_hyd 100.0 1.7E-75 3.8E-80 556.4 30.7 298 25-331 1-318 (318)
12 cd00455 nuc_hydro nuc_hydro: N 100.0 5.9E-73 1.3E-77 534.6 32.8 295 26-331 1-295 (295)
13 PF01156 IU_nuc_hydro: Inosine 100.0 4.9E-74 1.1E-78 546.3 22.0 305 23-338 1-312 (312)
14 cd02647 nuc_hydro_TvIAG nuc_hy 100.0 2.4E-72 5.2E-77 532.4 29.6 290 24-331 1-307 (312)
15 cd02648 nuc_hydro_1 NH_1: A su 100.0 4.3E-71 9.4E-76 526.1 30.7 277 23-300 1-348 (367)
16 KOG2938 Predicted inosine-urid 100.0 3.9E-57 8.5E-62 427.5 24.6 317 14-337 12-334 (350)
17 cd02652 nuc_hydro_2 NH_2: A su 100.0 2.1E-47 4.5E-52 357.3 20.4 239 26-289 1-265 (293)
18 PF07632 DUF1593: Protein of u 98.2 1.4E-06 3.1E-11 79.9 5.2 137 25-175 1-159 (260)
19 KOG2938 Predicted inosine-urid 73.8 1.8 3.9E-05 42.0 1.6 85 123-208 191-290 (350)
20 PF14097 SpoVAE: Stage V sporu 73.7 3.7 7.9E-05 35.6 3.2 26 38-63 72-97 (180)
21 PF10609 ParA: ParA/MinD ATPas 71.0 6.5 0.00014 29.9 3.8 54 25-85 3-57 (81)
22 PF00455 DeoRC: DeoR C termina 65.0 27 0.00059 29.8 6.9 73 126-214 30-102 (161)
23 COG0482 TrmU Predicted tRNA(5- 63.8 32 0.00069 33.6 7.8 56 22-78 2-63 (356)
24 PF03054 tRNA_Me_trans: tRNA m 61.8 25 0.00055 34.3 6.8 58 24-85 1-66 (356)
25 PRK09802 DNA-binding transcrip 58.3 40 0.00086 31.4 7.3 73 126-214 117-189 (269)
26 PF01168 Ala_racemase_N: Alani 56.3 40 0.00086 29.8 6.7 42 21-62 108-157 (218)
27 PRK13509 transcriptional repre 53.9 54 0.0012 30.1 7.3 71 126-214 104-174 (251)
28 COG2185 Sbm Methylmalonyl-CoA 51.6 35 0.00076 28.8 5.1 55 34-93 52-106 (143)
29 cd02065 B12-binding_like B12 b 47.8 45 0.00097 26.3 5.2 65 25-95 30-94 (125)
30 COG2248 Predicted hydrolase (m 45.4 42 0.00091 31.3 5.0 78 68-150 118-212 (304)
31 PRK02628 nadE NAD synthetase; 43.8 59 0.0013 34.6 6.6 62 22-84 360-429 (679)
32 cd02072 Glm_B12_BD B12 binding 41.1 46 0.00099 27.6 4.2 46 45-92 47-92 (128)
33 TIGR00044 pyridoxal phosphate 38.5 1.3E+02 0.0029 27.0 7.3 41 22-62 119-169 (229)
34 PRK10411 DNA-binding transcrip 37.4 1.4E+02 0.0031 27.2 7.3 71 127-214 105-175 (240)
35 TIGR00640 acid_CoA_mut_C methy 36.6 60 0.0013 26.9 4.3 44 46-91 51-94 (132)
36 PRK10681 DNA-binding transcrip 35.6 1.6E+02 0.0036 26.9 7.5 72 127-214 104-175 (252)
37 COG1927 Mtd Coenzyme F420-depe 35.0 1.4E+02 0.0031 27.0 6.6 73 126-211 18-94 (277)
38 PF09078 CheY-binding: CheY bi 34.1 24 0.00052 25.7 1.3 28 15-42 27-54 (65)
39 COG1206 Gid NAD(FAD)-utilizing 33.5 19 0.00041 34.9 0.9 33 130-170 119-152 (439)
40 cd01993 Alpha_ANH_like_II This 33.4 1.4E+02 0.0029 25.3 6.3 55 25-79 1-61 (185)
41 PRK02261 methylaspartate mutas 32.9 68 0.0015 26.7 4.1 56 32-92 41-96 (137)
42 cd00553 NAD_synthase NAD+ synt 32.5 1.5E+02 0.0032 27.1 6.6 57 22-79 22-79 (248)
43 COG1349 GlpR Transcriptional r 32.1 2.1E+02 0.0046 26.2 7.7 76 124-215 100-175 (253)
44 TIGR00995 3a0901s06TIC22 chlor 31.7 3.4E+02 0.0073 25.5 8.8 133 6-159 86-242 (270)
45 PF01171 ATP_bind_3: PP-loop f 30.6 2.8E+02 0.0062 23.7 7.9 57 26-86 2-63 (182)
46 cd06820 PLPDE_III_LS_D-TA_like 30.5 2.1E+02 0.0046 27.3 7.7 41 22-62 120-169 (353)
47 COG0489 Mrp ATPases involved i 29.9 1.3E+02 0.0028 27.9 5.9 52 23-78 167-218 (265)
48 PRK10696 tRNA 2-thiocytidine b 29.5 2.1E+02 0.0046 26.2 7.2 55 21-78 27-87 (258)
49 PRK10906 DNA-binding transcrip 27.9 3E+02 0.0065 25.3 7.9 71 127-213 103-173 (252)
50 PRK13980 NAD synthetase; Provi 27.9 2.5E+02 0.0055 25.9 7.4 56 23-79 30-86 (265)
51 CHL00181 cbbX CbbX; Provisiona 26.2 1.2E+02 0.0026 28.5 4.9 47 123-169 144-190 (287)
52 cd06819 PLPDE_III_LS_D-TA Type 26.2 3.5E+02 0.0076 25.8 8.4 39 22-60 124-171 (358)
53 PF02540 NAD_synthase: NAD syn 26.1 2.3E+02 0.0049 25.9 6.7 57 22-79 17-74 (242)
54 cd00717 URO-D Uroporphyrinogen 25.7 3.5E+02 0.0076 25.6 8.2 27 202-230 188-214 (335)
55 TIGR02432 lysidine_TilS_N tRNA 25.2 2.4E+02 0.0053 24.0 6.5 54 25-78 1-58 (189)
56 cd06824 PLPDE_III_Yggs_like Py 24.8 3.3E+02 0.0072 24.3 7.4 37 26-62 123-167 (224)
57 cd06814 PLPDE_III_DSD_D-TA_lik 24.7 3E+02 0.0064 27.0 7.6 39 22-60 132-179 (379)
58 KOG0237 Glycinamide ribonucleo 24.6 2.8E+02 0.006 29.2 7.3 28 183-210 121-149 (788)
59 cd06822 PLPDE_III_YBL036c_euk 24.0 3.3E+02 0.0072 24.7 7.3 41 22-62 116-167 (227)
60 TIGR01849 PHB_depoly_PhaZ poly 24.0 2E+02 0.0042 28.7 6.1 58 124-181 153-213 (406)
61 PRK10434 srlR DNA-bindng trans 23.9 3.4E+02 0.0074 24.9 7.5 71 129-214 105-175 (256)
62 PRK06015 keto-hydroxyglutarate 23.6 3.5E+02 0.0076 24.1 7.2 29 127-157 132-163 (201)
63 KOG3022 Predicted ATPase, nucl 23.5 89 0.0019 29.5 3.4 58 22-85 156-214 (300)
64 TIGR00552 nadE NAD+ synthetase 23.4 2.8E+02 0.0062 25.2 6.8 58 22-79 21-78 (250)
65 PRK14665 mnmA tRNA-specific 2- 23.4 3.5E+02 0.0076 26.4 7.7 56 23-79 5-61 (360)
66 cd03307 Mta_CmuA_like MtaA_Cmu 23.4 3.2E+02 0.0069 25.8 7.4 29 201-229 181-209 (326)
67 cd01995 ExsB ExsB is a transcr 23.2 3.2E+02 0.007 22.8 6.7 51 26-78 2-52 (169)
68 COG3933 Transcriptional antite 23.1 8E+02 0.017 24.9 10.3 97 32-161 85-189 (470)
69 cd00635 PLPDE_III_YBL036c_like 23.1 3.4E+02 0.0074 24.0 7.2 40 23-62 116-165 (222)
70 COG0603 Predicted PP-loop supe 22.5 4.8E+02 0.01 23.8 7.8 56 23-80 2-57 (222)
71 TIGR00268 conserved hypothetic 22.1 3.1E+02 0.0066 25.0 6.8 55 23-79 12-66 (252)
72 PF12953 DUF3842: Domain of un 21.9 4.7E+02 0.01 21.8 9.6 78 129-220 15-112 (131)
73 cd07376 PLPDE_III_DSD_D-TA_lik 21.4 4.3E+02 0.0093 25.1 7.9 40 22-61 110-159 (345)
74 TIGR00342 thiazole biosynthesi 21.4 4.5E+02 0.0097 25.6 8.1 56 23-79 172-227 (371)
75 PF02601 Exonuc_VII_L: Exonucl 21.1 6.8E+02 0.015 23.5 9.1 76 124-208 25-111 (319)
76 TIGR02881 spore_V_K stage V sp 20.8 1.7E+02 0.0036 26.8 4.7 45 124-168 127-171 (261)
77 PF06508 QueC: Queuosine biosy 20.7 2.9E+02 0.0062 24.6 6.1 52 26-79 2-53 (209)
78 PRK10886 DnaA initiator-associ 20.6 1.6E+02 0.0035 26.1 4.4 50 30-85 91-140 (196)
79 PRK10660 tilS tRNA(Ile)-lysidi 20.4 3E+02 0.0066 27.5 6.8 56 22-78 14-75 (436)
80 cd01996 Alpha_ANH_like_III Thi 20.1 2.3E+02 0.005 23.2 5.1 51 26-78 4-54 (154)
No 1
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.1e-86 Score=619.27 Aligned_cols=308 Identities=41% Similarity=0.655 Sum_probs=294.1
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccc
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 101 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~ 101 (338)
+++|||||||+|+||++||+||+++|++||+|||+|+||++++++++|++.+|+.+|+.+||||+|+.+||.++. ..++
T Consensus 1 ~~~kiiiD~DpG~DDaiAlllal~~p~i~l~giTtv~GNv~le~t~~Na~~~l~~~g~~~iPV~~Ga~~Pl~r~~-~~a~ 79 (311)
T COG1957 1 MMRKIIIDCDPGHDDAIALLLALASPEIDLLGITTVAGNVPLEQTTRNALSVLELLGRADIPVYAGAARPLLREP-ITAP 79 (311)
T ss_pred CCceEEEeCCCChhHHHHHHHHhcCCCceEEEEEEecCcccHhHHHHHHHHHHHHcCCCCCCeecCCCCCcCCCC-cchh
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999865 5678
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCC
Q 019632 102 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 181 (338)
Q Consensus 102 ~~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 181 (338)
++||++||++..+|.|...+...+|+++|+++++++|++|||+++|||||||+||+++|+++++||+||||||++..+||
T Consensus 80 ~iHG~~Gl~~~~lp~~~~~~~~~~A~~~ii~~l~~~~g~vtlva~GPLTNiAlAl~~~P~i~~~ik~iviMGGa~~~~GN 159 (311)
T COG1957 80 EIHGESGLGGPELPEPTRKLESKHAVDAIIDTLMANPGEVTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAFFVPGN 159 (311)
T ss_pred hhcCCcCCCCCCCCcccccccCCcHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhCcchhhhhcEEEEecCccCCCCC
Confidence 99999999999899888877789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCccccc
Q 019632 182 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 261 (338)
Q Consensus 182 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 261 (338)
+||.||||||+|||||++||+||+|++|+|||+|+|+..+++.++++++.+++.++++.+++++|..++.+.++..|.++
T Consensus 160 vtp~AEfNi~~DPeAA~iVf~sg~~i~mv~LdvT~q~~~t~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~g~~g~~~ 239 (311)
T COG1957 160 VTPAAEFNIWVDPEAAKIVFTSGWPITMVPLDVTHQVLLTPDVLARLRAAGGPAAELVADLLDFYLAYYKSRQGLDGAPL 239 (311)
T ss_pred cCcchhhhhccCHHHHHHHHhCCCceEEechhhhhhhcCCHHHHHHHHHhCCccHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred cccchhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 262 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 262 ~D~la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
||++|++|+++|++|++++.+|+||+.| .++|+|++|+.. .+...+|++++.++|.++|++++.++|.+
T Consensus 240 hD~~a~a~l~~p~l~~~~~~~V~Ve~~~~lt~G~Tv~d~~~-------~~~~~~n~~v~~~vD~~~f~~~i~~~l~~ 309 (311)
T COG1957 240 HDPLAVAYLLDPELFTTREANVDVETAGGLTRGMTVVDWRG-------VLGKPPNAQVAVDVDVEGFLDLILEALAR 309 (311)
T ss_pred ccHHHHHHHhChhhhcceEEEEEEEeCCCCcCcceEEEecc-------cCCCCCCeEEeeccCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998 899999999863 23467899999999999999999999875
No 2
>PLN02717 uridine nucleosidase
Probab=100.00 E-value=1e-83 Score=612.49 Aligned_cols=314 Identities=72% Similarity=1.141 Sum_probs=290.6
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCC-CCCcccc
Q 019632 24 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGG-KPRVAEF 102 (338)
Q Consensus 24 ~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~-~~~~~~~ 102 (338)
+|||||||+|+||++||+|||++|+++|+|||+|+||++++++++|++++|+++|+.+||||+|+..||.+. ..+.+++
T Consensus 1 ~~vIiDtD~GiDDa~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~~~~~~~~ 80 (316)
T PLN02717 1 KKLIIDTDPGIDDAMAILMALRSPEVEVIGLTTIFGNVTTKLATRNALHLLEMAGRPDVPVAEGSHEPLKGGTKPRIADF 80 (316)
T ss_pred CcEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHHcCCCCCCEEeCCCCCCCCCCCCcCCcc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999985 2456778
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCC
Q 019632 103 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 182 (338)
Q Consensus 103 ~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 182 (338)
+||.||||+..+|.|...+...+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++..+||+
T Consensus 81 ~hG~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~~GN~ 160 (316)
T PLN02717 81 VHGSDGLGNTNLPPPKGKKIEKSAAEFLVEKVSEYPGEVTVVALGPLTNLALAIKLDPSFAKKVGQIVVLGGAFFVNGNV 160 (316)
T ss_pred CCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChHHHhhcCEEEEeCCCcCCCCCC
Confidence 99999999999888777777889999999999999999999999999999999999999999999999999999889999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCcccccc
Q 019632 183 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH 262 (338)
Q Consensus 183 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 262 (338)
+|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..++++|
T Consensus 161 tp~aEfN~~~DPeAA~iVl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T PLN02717 161 NPAAEANIFGDPEAADIVFTSGADITVVGINVTTQVVLTDADLEELRDSKGKYAQFLCDICKFYRDWHRKSYGIDGIYLH 240 (316)
T ss_pred CchhhhhhhcCHHHHHHHHhCCCCeEEEcccccCceecCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhcCCCcccCC
Confidence 99999999999999999999999999999999999999999999998888899999999999999998877777899999
Q ss_pred ccchhhhhccCCeeeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 263 DPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 263 D~la~a~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
|++|++++++|++|++++.+|+||++|.+||+|++|++...+.....+.+.+|++|+.++|.++|+++|+++|.+
T Consensus 241 D~la~a~~~~P~~~~~~~~~v~Ve~~g~trG~tv~d~~~~~~~~~~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 315 (316)
T PLN02717 241 DPTALLAAVRPSLFTYKEGVVRVETEGICRGLTLFDNGLKRWNGENAWTGRPPVKVAVTVDAPAVVELVKERLMA 315 (316)
T ss_pred cHHHhHHhcCccceEEEEecEEEEeCCCCCceEeeeccccccccccccCCCCCCEEeeecCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999743222111123456799999999999999999999865
No 3
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=100.00 E-value=1.7e-83 Score=609.23 Aligned_cols=306 Identities=29% Similarity=0.522 Sum_probs=285.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccc
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 101 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~ 101 (338)
+++|||||||+|+||++||+|||.+|++||+|||||+||++++++++|++++|+.+|+ +||||+|+..||.++. ..+.
T Consensus 2 ~~~kvIiDtD~G~DDa~Al~~al~~p~~ev~gIttv~GN~~~~~~~~Nal~~l~~~g~-~IPV~~Ga~~PL~~~~-~~~~ 79 (313)
T PRK09955 2 EKRKIILDCDPGHDDAIAMMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI-NVPVYAGMPQPIMRQQ-IVAD 79 (313)
T ss_pred CCceEEEECCCChHHHHHHHHHhcCCCcEEEEEEecCCCcCHHHHHHHHHHHHHHhCC-CCCEEeCCCCCCCCCC-CCcc
Confidence 3579999999999999999999999999999999999999999999999999999997 8999999999998864 4567
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCC
Q 019632 102 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 181 (338)
Q Consensus 102 ~~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 181 (338)
.+||.+|||+..+|.+...+.+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++. .||
T Consensus 80 ~~HG~~Glg~~~~~~~~~~~~~~~A~~~i~~~~~~~p~eitiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~-~GN 158 (313)
T PRK09955 80 NIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYG-TGN 158 (313)
T ss_pred ccCCCCCCCCCCCCCcccccCCCcHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChHHHHhCCEEEEeCCCCC-CCC
Confidence 8999999999988877777778899999999999999999999999999999999999999999999999999984 799
Q ss_pred CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCccccc
Q 019632 182 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 261 (338)
Q Consensus 182 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 261 (338)
++|.||||||+|||||++||+|++|++|+|||+|+++.++++++++|.+.+++.++|+.+++++|.+++.+.++..++++
T Consensus 159 ~tp~aEfN~~~DPeAA~iV~~s~~~i~~v~lDvT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l 238 (313)
T PRK09955 159 FTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPV 238 (313)
T ss_pred CCCCeeeccccCHHHHHHHHhCCCCEEEeccccccceecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999988899999999999999988877777789999
Q ss_pred cccchhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 262 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 262 ~D~la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
||++|++++++|++|++++.+|+||++| .+||+|++|..+. ++..+|++|+.++|.++|+++|+++|.+
T Consensus 239 hD~la~a~~~~P~l~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (313)
T PRK09955 239 HDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGV-------LGKPANTKVGITIDTDWFWGLVEECVRG 308 (313)
T ss_pred ChHHHHHHHcChhhEEEEEeeEEEEeCCCCCCceEEeccccc-------CCCCCCCEEeeecCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 7999999996532 2345799999999999999999999854
No 4
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=9.6e-80 Score=585.83 Aligned_cols=304 Identities=32% Similarity=0.528 Sum_probs=282.3
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccccc
Q 019632 25 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 104 (338)
Q Consensus 25 ~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~h 104 (338)
|||||||+|+||++||+|||++|++||+|||+|+||++++++++|++++|+++|+.+||||+|+..||.++. ..+..+|
T Consensus 1 kvIiDtD~GiDDa~AL~~al~~p~iel~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~-~~~~~~h 79 (320)
T cd02653 1 KVIIDCDPGIDDALALLYLLASPDLDVVGITTTAGNVPVEQVAANALGVLELLGRTDIPVYLGADKPLAGPL-TTAQDTH 79 (320)
T ss_pred CEEEECCCChHHHHHHHHHhhCCCCeEEEEEEcCCccCHHHHHHHHHHHHHHcCCCCCcEEeCCCccCCCCC-CCccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999998854 4567899
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCc
Q 019632 105 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 184 (338)
Q Consensus 105 g~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~ 184 (338)
|+||||+..+|.+...+...+|+++|+++++++| +|+||++|||||||+|++++|++.++||+||+|||++..+||++|
T Consensus 80 G~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~-eitiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~~GN~tp 158 (320)
T cd02653 80 GPDGLGYAELPASTRTLSDESAAQAWVDLARAHP-DLIGLATGPLTNLALALREEPELPRLLRRLVIMGGAFNSRGNTSP 158 (320)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCC-CeEEEECCchHHHHHHHHHChHHHHhcCEEEEECCCcCCCCCCCc
Confidence 9999999988877766778899999999999999 999999999999999999999999999999999999988899999
Q ss_pred cccccccCCHHHHHHHHhc----CCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCcccc
Q 019632 185 AAEANIYGDPEAADVVFTS----GANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIF 260 (338)
Q Consensus 185 ~aEfN~~~DPeAA~~Vl~s----~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 260 (338)
.||||||+|||||++||+| ++|++|+|||+|+++.+++++++++.+..++.++|+.+++++|.+++.+..+..+++
T Consensus 159 ~aEfN~~~DPeAA~iVl~s~~~~~~~i~~vplDvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (320)
T cd02653 159 VAEWNYWVDPEAAKEVLAAFGGHPVRPTICGLDVTRAVVLTPNLLERLARAKDSVGAFIEDALRFYFEFHWAYGHGYGAV 238 (320)
T ss_pred HhHHhhhcCHHHHHHHHhccccCCCCeEEeccccceeeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999998 699999999999999999999999998888999999999999999886654455789
Q ss_pred ccccchhhhhccCCeeeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 261 LHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 261 l~D~la~a~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
+||++|++++++|++|++++.+++||++|..+|+|++|+.+. +...+|++|+.++|.++|+++|+++|.+
T Consensus 239 lhD~lAva~~~~P~l~~~~~~~v~Ve~~g~~~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (320)
T cd02653 239 IHDPLAAAVALNPNLARGRPAYVDVECTGVLTGQTVVDWAGF-------WGKGANAEILTKVDSQDFMALFIERVLA 308 (320)
T ss_pred CChHHHHHHhcChhheEEEEeeEEEEeCCCCCceEEEecccc-------CCCCCCcEEeeccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996669999997532 2345799999999999999999998864
No 5
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=100.00 E-value=2.2e-79 Score=581.50 Aligned_cols=306 Identities=33% Similarity=0.527 Sum_probs=284.0
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 102 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 102 (338)
++|||||||+|+||++||+|||++|+++|+|||+++||++.+++++|++++|+++|+.+||||+|+..||.++. ..++.
T Consensus 2 ~~~vIiDtD~g~DDa~AL~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~ 80 (311)
T PRK10443 2 ALPIILDCDPGHDDAIALVLALASPELDVKAVTTSAGNQTPEKTLRNALRMLTLLNRTDIPVAGGAVKPLMREL-IIADN 80 (311)
T ss_pred CCcEEEECCCChHHHHHHHHHhcCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCCCC-cCccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998753 45678
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCC
Q 019632 103 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 182 (338)
Q Consensus 103 ~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 182 (338)
+||++|+|+..+|.|...+.+.+|+++|+++++++|++|+||++|||||||+|++++|++.++||+||+|||++. .||+
T Consensus 81 ~hG~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~-~Gn~ 159 (311)
T PRK10443 81 VHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTLVSTGPQTNVALLLASHPELHSKIARIVIMGGAMG-LGNW 159 (311)
T ss_pred cCCCCCCCCCCCCCCccCCCCccHHHHHHHHHHhCCCCeEEEEccchHHHHHHHHHCchhhhhhCEEEEccCCCC-CCCC
Confidence 999999999888877777778899999999999999999999999999999999999999999999999999996 5999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh-cCCCccccc
Q 019632 183 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVK-SDGVHGIFL 261 (338)
Q Consensus 183 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l 261 (338)
+|.+|||||+|||||++||+|++|++|+|||+|+++.++++++++|.+.+++.++|+.+++++|..++.+ .++..++++
T Consensus 160 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~l 239 (311)
T PRK10443 160 TPAAEFNIYVDPEAAEIVFQSGIPIVMAGLDVTHKAQIMDEDIERIRAIGNPVATIVAELLDFFMEYHKDEKWGFVGAPL 239 (311)
T ss_pred CcchhhccCcCHHHHHHHHhCCCCEEEecccccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHhHhhhCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999988899999999999999888764 456778999
Q ss_pred cccchhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 262 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 262 ~D~la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
||++|++++++|++|++++.+|+||++| .+||+|++|.... +...+|++|+.++|.++|+++|+++|.+
T Consensus 240 hD~lava~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~~~~~~-------~~~~~n~~v~~~vd~~~f~~~l~~~l~~ 309 (311)
T PRK10443 240 HDPCTIAWLLKPELFTTVERWVGVETQGEYTQGMTVVDYYQL-------TGNKPNATVLVDVDRQGFVDLLAERLKF 309 (311)
T ss_pred CCHHHhHHhcCcceEEEEEeCEEEEcCCCCCCceEEEecccc-------CCCCCCCEEEeecCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998 6999999986421 1235799999999999999999999864
No 6
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=100.00 E-value=2e-79 Score=580.72 Aligned_cols=301 Identities=37% Similarity=0.583 Sum_probs=279.2
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccccc
Q 019632 25 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 104 (338)
Q Consensus 25 ~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~h 104 (338)
|||||||+|+||++||+|||++|+++|+|||+|+||++.+++++|++++|+.+|+++||||+|+..||.++. ..++.+|
T Consensus 1 kvIiDtD~g~DDa~Al~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~-~~~~~~h 79 (302)
T cd02651 1 PIIIDCDPGHDDAVAILLALFHPELDLLGITTVAGNVPLEKTTRNALKLLTLLGRTDVPVAAGAARPLVRPL-ITASDIH 79 (302)
T ss_pred CeEEECCCCHHHHHHHHHHhcCCCceEEEEEeccCeecHHHHHHHHHHHHHHhCCCCCcEEcCCCcCcCCCC-CCCcCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999999998854 3567799
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCc
Q 019632 105 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 184 (338)
Q Consensus 105 g~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~ 184 (338)
|.+|||+..+|.+...+...+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++ .+||++|
T Consensus 80 G~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~evtiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~-~~GN~tp 158 (302)
T cd02651 80 GESGLDGADLPPPPRRPEDIHAVDAIIDTLRASPEPITLVATGPLTNIALLLRKYPELAERIKEIVLMGGAL-GRGNITP 158 (302)
T ss_pred CCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHChhhHhhcCEEEEecCCc-CCCCCCh
Confidence 999999998887766667789999999999999999999999999999999999999999999999999998 6899999
Q ss_pred cccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCcccccccc
Q 019632 185 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDP 264 (338)
Q Consensus 185 ~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~D~ 264 (338)
.+|||||+|||||++||+|++|++|+|||+|+++.++++++++|.+.+++.++|+.+++++|.+++.... ..++++||+
T Consensus 159 ~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~ 237 (302)
T cd02651 159 AAEFNIFVDPEAAKIVFNSGIPITMVPLDVTHKALATPEVIERIRALGNPVGKMLAELLDFFAETYGSAF-TEGPPLHDP 237 (302)
T ss_pred HHHhhcccCHHHHHHHHhCCCCeEEeccceeeeeccCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhc-cCCCCCCcH
Confidence 9999999999999999999999999999999999999999999998888999999999999987665433 568899999
Q ss_pred chhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHH
Q 019632 265 VSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLL 335 (338)
Q Consensus 265 la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l 335 (338)
+|++++++|++|++++.+++|+++| .+||+|++|+.+. .+..+|++|+.++|.++|+++|.++|
T Consensus 238 la~~~~~~p~~~~~~~~~v~Ve~~g~~~rG~tv~d~~~~-------~~~~~~~~v~~~vd~~~f~~~l~~~l 302 (302)
T cd02651 238 CAVAYLLDPELFTTKRANVDVETEGELTRGRTVVDLRGV-------TGRPANAQVAVDVDVEKFWDLLLEAL 302 (302)
T ss_pred HHhHHhcCccceEEEEeeEEEEcCCCCCCceEEEecccc-------CCCCCCcEEeeecCHHHHHHHHHHhC
Confidence 9999999999999999999999998 8999999996532 12457999999999999999999864
No 7
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=100.00 E-value=4.6e-79 Score=578.06 Aligned_cols=300 Identities=37% Similarity=0.534 Sum_probs=277.2
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 102 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 102 (338)
++|||||||+|+||++||+|||++|+++|+|||+|+||++.+++++|++++|+++| .+||||+|+..||.++. ..+..
T Consensus 2 ~~kvIiDtD~g~DDa~Al~~al~~p~~~v~git~v~GN~~~~~~~~na~~~l~~~g-~dIPV~~Ga~~pl~~~~-~~~~~ 79 (304)
T PRK10768 2 RLPIILDTDPGIDDAVAIAAALFAPELDLKLITTVAGNVSVEKTTRNALKLLHFFN-SDVPVAQGAAKPLVRPL-RDAAS 79 (304)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHHHHHhC-CCCeEEeCCccccCCCC-CCccc
Confidence 46899999999999999999999999999999999999999999999999999999 89999999999998753 45677
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCC
Q 019632 103 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 182 (338)
Q Consensus 103 ~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 182 (338)
+||++|||+..+|.+...+...+|+++|+++++++|++|+||++|||||||+|++++|++.++||+||+|||++. +||+
T Consensus 80 ~hG~~Gl~~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itila~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~-~GN~ 158 (304)
T PRK10768 80 VHGESGMEGYDFPEHTRKPLSIPAVEAMRDALMNAPEPVTLVAIGPLTNIALLLSTYPEVKPYIKRIVLMGGSAG-RGNV 158 (304)
T ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChhhHhhcCEEEEecCCcC-cCCC
Confidence 999999999998887777778899999999999999999999999999999999999999999999999999984 7999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCcccccc
Q 019632 183 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH 262 (338)
Q Consensus 183 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 262 (338)
+|.||||||+|||||++||+|++|++|+|||+|+++.++++++++|++. ++.++|+.+++++|..++.. .++++|
T Consensus 159 t~~aEfN~~~DPeAA~iVl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~----~g~~~h 233 (304)
T PRK10768 159 TPNAEFNIAVDPEAAAIVFRSGIPIVMCGLDVTNQALLTPDYLATLPEL-NRTGKMLHALFSHYRSGSMQ----TGLRMH 233 (304)
T ss_pred CccchhccCCCHHHHHHHHhCCCCeEEeccccceeeecCHHHHHHHHhc-ChHHHHHHHHHHHHHhhccc----CCCCcC
Confidence 9999999999999999999999999999999999999999999999865 68899999999998776532 578999
Q ss_pred ccchhhhhccCCeeeeEEeeEEEEecCC-cceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 263 DPVSFVALVRPDLFTFKKGVVRVETQGI-CMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 263 D~la~a~~~~P~l~~~~~~~v~V~~~g~-~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
|++|++++++|++|++++.+|+||++|. +||+|++|.... ++..+|++|+.++|.++|+++|.++|.+
T Consensus 234 D~la~a~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~d~~~~-------~~~~~~~~v~~~vd~~~f~~~~~~~l~~ 302 (304)
T PRK10768 234 DVCAIAYLLRPELFTLKPCFVDVETQGEFTAGATVVDIDGR-------LGKPANAQVALDIDVDGFQKWFAEVLAL 302 (304)
T ss_pred cHHHhhheeCcccEEEEEecEEEEeCCCCCCceEEEecccc-------CCCCCCcEEEeecCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999984 999999996532 1346799999999999999999999865
No 8
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=100.00 E-value=1.8e-78 Score=573.51 Aligned_cols=299 Identities=32% Similarity=0.480 Sum_probs=276.1
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccccc
Q 019632 24 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA 103 (338)
Q Consensus 24 ~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~ 103 (338)
+|||||||+|+||++||++||++|+++|+|||+|+||++.+++++|++++|+++|+.+||||+|+.+||.++. ..+..+
T Consensus 1 ~kviiDtD~g~DD~~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~~ 79 (306)
T cd02649 1 RKLIIDTDCGGDDAWALLMALASPNVEVLAITCVHGNTNVEQVVKNALRVLEACGRRDIPVYRGASKPLLGPG-PTAAYF 79 (306)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEecCCCccCCCCC-CCcccc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999998864 356779
Q ss_pred cCCCCCCCCCCCCCC--CCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCC
Q 019632 104 HGSDGMGNISLTPPK--AKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 181 (338)
Q Consensus 104 hg~dGlg~~~~p~~~--~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 181 (338)
||.+|||+..+|.+. ..+.+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++...||
T Consensus 80 hG~~Glg~~~~p~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~p~~~~~i~~iviMGG~~~~~GN 159 (306)
T cd02649 80 HGKDGFGDVGFPEPKDELELQKEHAVDAIIRLVREYPGEITLVALGPLTNLALAYRLDPSLPQKIKRLYIMGGNREGVGN 159 (306)
T ss_pred CCCCCCCCCCCCCCcccCCcCCCCHHHHHHHHHHhCCCCeEEEecccHHHHHHHHHHChHHHHhcCeEEEeCCCccCCCC
Confidence 999999999888766 556678999999999999999999999999999999999999999999999999999988899
Q ss_pred CCccccccccCCHHHHHHHHhc-CCcEEEEeccccc-ccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCccc
Q 019632 182 VNPAAEANIYGDPEAADVVFTS-GANIAVVGINITT-QVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGI 259 (338)
Q Consensus 182 ~~~~aEfN~~~DPeAA~~Vl~s-~~~i~~v~ldvt~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 259 (338)
++|.||||||+|||||++||+| ++|++|+|||+|+ ++.+++++++++++. ++.++|+.+++++|.+++.+..+..++
T Consensus 160 ~~~~aEfN~~~DPeAA~~Vl~s~~~~i~lv~ldvt~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 238 (306)
T cd02649 160 TTPAAEFNFHVDPEAAHIVLNSFGCPITIVPWETTLLAFPLDWEFEDKWANR-LEKALFAESLNRREYAFASEGLGGDGW 238 (306)
T ss_pred CCcccccccccCHHHHHHHHhcCCCCEEEEccccccceeecCHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999999999 9999999999999 999999999999875 588999999999998887766677889
Q ss_pred cccccchhhhhccCCeeeeEEe-eEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHH
Q 019632 260 FLHDPVSFVALVRPDLFTFKKG-VVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYI 331 (338)
Q Consensus 260 ~l~D~la~a~~~~P~l~~~~~~-~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l 331 (338)
++||++|++++++|++|++++. +|+|+++| .+||+|++|+.+. +...+|++|+.++|.++|+++|
T Consensus 239 ~~hD~lava~~~~P~l~~~~~~~~v~Ve~~g~~~~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~ 305 (306)
T cd02649 239 VPCDALAVAAALDPSIITRRLTYAVDVELHGELTRGQMVVDWLGT-------LKKKPNARVITKIDREKFKELL 305 (306)
T ss_pred CCCcHHHHHHHcCHhHEEEEEeeeEEEEECCCCCcceEEEecccc-------CCCCCCCEEehhcCHHHHHHHh
Confidence 9999999999999999998765 59999997 6999999997532 2345799999999999999987
No 9
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.3e-78 Score=573.88 Aligned_cols=303 Identities=50% Similarity=0.848 Sum_probs=278.3
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccccc
Q 019632 25 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 104 (338)
Q Consensus 25 ~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~h 104 (338)
|||||||+|+||++||++||++|+++|+|||+++||++.+++++|++++|+++|+.+||||+|+++||.+.....+.++|
T Consensus 1 kvIiDtD~g~DD~~AL~~al~~p~~~v~gIt~~~Gn~~~~~~~~na~~~l~~~g~~diPV~~G~~~pl~~~~~~~~~~~h 80 (304)
T cd02650 1 KLILDTDPGIDDAMALAYALAHPDVDLIGVTTVYGNVTIETATRNALALLELFGRPDVPVAEGAAKPLTRPPFRIATFVH 80 (304)
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEcCCCCCCCCCCcCCcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999876543678899
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCc
Q 019632 105 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 184 (338)
Q Consensus 105 g~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~ 184 (338)
|.||||+..+|.+...+...+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++...||++|
T Consensus 81 g~dGlg~~~~p~~~~~~~~~~A~~~l~~~~~~~~~~vtivaiGPLTNlA~al~~~P~i~~~ik~iviMGG~~~~~GN~~p 160 (304)
T cd02650 81 GDNGLGDVELPAPPRQPEDESAADFLIELANEYPGELTLVAVGPLTNLALALARDPDFAKLVKQVVVMGGAFTVPGNVTP 160 (304)
T ss_pred CCCCCCCCCCCCCCCCcCccCHHHHHHHHHHhCCCCeEEEECCcHHHHHHHHHHCcHHHhhcCEEEEeCccccCCCCCCc
Confidence 99999999998777667788999999999999999999999999999999999999999999999999999988899999
Q ss_pred cccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCcccccccc
Q 019632 185 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDP 264 (338)
Q Consensus 185 ~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~D~ 264 (338)
.+|||||+||+||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..++++||+
T Consensus 161 ~aEfN~~~DP~AA~iVl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~D~ 240 (304)
T cd02650 161 AAEANIHGDPEAADIVFTAGADLTMVGLDVTTQTLLTREDLDELRDSGGKAGQFLADMLDYYIDFYQESPGLRGCALHDP 240 (304)
T ss_pred hHHhhcccCHHHHHHHHhCCCCeEEeCCceeeeEecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCcccCCcH
Confidence 99999999999999999999999999999999999999999999988889999999999999988876666678999999
Q ss_pred chhhhhccCCeeeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCH-HHHHHHHH
Q 019632 265 VSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNV-DKVLNYIK 332 (338)
Q Consensus 265 la~a~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~-~~f~~~l~ 332 (338)
+|++++++|++|++++.+++|+++|.+||+|++|..+..| |...+|.++...+|. ++|+++|+
T Consensus 241 la~~~~~~P~~~~~~~~~v~Ve~~g~~~G~tv~d~~~~~~-----~~~~~~~~~~~~~d~~~~f~~~~~ 304 (304)
T cd02650 241 LAVAAAVDPSLFTTREGVVRVETEGPTRGRTIGDRDGRRF-----WDSSPNATVAVDVDVDERFLKRLM 304 (304)
T ss_pred HHHHhhcCccceEEEEeeEEEEeCCCCCceEEEecccccc-----ccCCCCceEEEEEChhHHHHHHhC
Confidence 9999999999999999999999999999999999764432 233557555555555 99999873
No 10
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=100.00 E-value=2.2e-76 Score=564.14 Aligned_cols=302 Identities=23% Similarity=0.293 Sum_probs=263.6
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCC-CeEEEEEeecCCCChHHHHHHHHHHHHHhCCC-CCCcccCCCCCCCCCCCCcc
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCP-GVPVAEGSPEPLKGGKPRVA 100 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~-v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~-dIPV~~Ga~~pl~~~~~~~~ 100 (338)
++|||||||+|+||++||+|||++|+ ++|+|||||+||++++++++|++++|+++|+. ||||+.|+..|+.+.....+
T Consensus 2 ~~~vIiD~D~GiDDa~Al~~al~~~~~~~v~gIT~v~GNv~~~~~~~Na~~vl~~~g~~~dvPv~~ga~~~~~~~~~~~~ 81 (326)
T PTZ00313 2 PKPVILDHDGNHDDLVALALLLGNPEKVKVIGCICTDADCFVDDAFNVTGKLMCMMHAREATPLFPIGKSSFKGVNPFPS 81 (326)
T ss_pred CCCEEEeCCCCHHHHHHHHHHhcCCcCcEEEEEEEecCCccHHHHHHHHHHHHHHhCCCCCCCeeeecCCcccCCCCCcc
Confidence 46899999999999999999999997 99999999999999999999999999999997 89999999999876422233
Q ss_pred ccc---cCCCCCCCCCCCCCCC-----CCCC--ccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCc-chhhccceE
Q 019632 101 EFA---HGSDGMGNISLTPPKA-----KKCD--KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDS-SFASKVKNI 169 (338)
Q Consensus 101 ~~~---hg~dGlg~~~~p~~~~-----~~~~--~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P-~~~~~i~~i 169 (338)
.+. ||.+|||+..+|.+.. .+.. .+|+++|++++++||++||||++|||||||+||+++| ++.++||+|
T Consensus 82 ~~~~g~~G~~glg~~~~p~~~~~~~~~~~~~~~~~a~~~i~~~i~~~p~eItiva~GPLTNlAlal~~~pp~~~~~ik~i 161 (326)
T PTZ00313 82 EWRWSAKNMDDLPCLNIPEHVAIWEKLKPENEALVGEELLADLVMSSPEKVTICVTGPLSNVAWCIEKYGEEFTKKVEEC 161 (326)
T ss_pred hheecccCCCCCCCCCCCCccccccccCCccccchHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHhCCHHHHHhcCEE
Confidence 333 7888899887876652 2333 3599999999999999999999999999999999996 999999999
Q ss_pred EEecCCCCCCCCC-----CccccccccCCHHHHHHHHhcC-CcEEEEecccccccccCHHHHHHHHhcCC-cHHHHHHHH
Q 019632 170 VVLGGAFFALGNV-----NPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQVKLTDADFLELRQSKG-RYVQLLGDM 242 (338)
Q Consensus 170 viMGG~~~~~GN~-----~~~aEfN~~~DPeAA~~Vl~s~-~~i~~v~ldvt~~~~~~~~~~~~l~~~~~-~~~~~l~~~ 242 (338)
|+|||++..+||+ +|.||||||+|||||++||+|+ +|++|+|||+|+++.++++++++|.+.++ +.++|+.++
T Consensus 162 viMGG~~~~~GN~~~~~~tp~AEfN~~~DPeAA~iV~~s~~~~i~~v~LdvT~~~~~t~~~~~~l~~~~~~~~~~~~~~~ 241 (326)
T PTZ00313 162 VIMGGAVDVGGNVFLPGTDGSAEWNIYWDPPAAKTVLMCPHIRKVLFSLDSTNSVPVTSEVVKKFGAQNKYLLSQFVGST 241 (326)
T ss_pred EEeCCcccCCCCccCCCCCcccchhhhcCHHHHHHHHhCCCCCEEEeccccccceeCCHHHHHHHHhcCcchHHHHHHHH
Confidence 9999999888998 7999999999999999999996 99999999999999999999999987655 578888887
Q ss_pred HHHHHHhhhhcCCCccccccccchhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEee
Q 019632 243 CKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWT 321 (338)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~D~la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~ 321 (338)
+..+..+ ....+..++++||++|++++++|++|++++.+|+||++| .++|+|+++.. +.++++|+.+
T Consensus 242 ~~~~~~~-~~~~~~~g~~~hD~lA~a~~~~Pel~~~~~~~v~Ve~~~~~t~G~tv~~~~-----------~~~~~~V~~~ 309 (326)
T PTZ00313 242 WAMCTHH-ELLRPGDGYYAWDVLTAAYVIERNLAELEPVPLEVVVEKAKNEGRTRRAAE-----------GAACTYVAKN 309 (326)
T ss_pred Hhhhhhh-hhhcCCCCCcCcHHHHHHHhcChheEEEEEEEEEEEeCCCCCCceEEeCCC-----------CCCceEEEec
Confidence 6543221 111123688999999999999999999999999999985 79999998642 2357999999
Q ss_pred cCHHHHHHHHHHHHh
Q 019632 322 VNVDKVLNYIKRLLM 336 (338)
Q Consensus 322 vD~~~f~~~l~~~l~ 336 (338)
+|.++|+++|+++|.
T Consensus 310 vd~~~f~~~~~~~l~ 324 (326)
T PTZ00313 310 TNAELFYDMVLDSAR 324 (326)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999874
No 11
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=100.00 E-value=1.7e-75 Score=556.42 Aligned_cols=298 Identities=29% Similarity=0.376 Sum_probs=264.7
Q ss_pred eEEEecCCC----chHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCc-
Q 019632 25 KLIIDTDPG----IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRV- 99 (338)
Q Consensus 25 ~vIiDtD~G----~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~- 99 (338)
|||||||+| +||++||+|||++|+++|+|||||+||++++++++|++++|+++|+.+||||+|+.+||.+.....
T Consensus 1 kvIiDtD~G~~~d~DDa~Al~lal~~p~~el~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~ 80 (318)
T cd02654 1 KVILDNDIAMGRDTDDGLALALLLWSPEVELLGLSAVSGNCWLSAVTYNVLRMLELAGADAIPVYAGANTPLGRTNRAFH 80 (318)
T ss_pred CEEEEcCCCCCCCccHHHHHHHHhhCCCceEEEEEEecCCCCHHHHHHHHHHHHHHhCCCCCCEEECCCccccCCccccc
Confidence 699999999 999999999999999999999999999999999999999999999999999999999998753211
Q ss_pred -cccccCCCCCCCCCCCCCC--------CCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEE
Q 019632 100 -AEFAHGSDGMGNISLTPPK--------AKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIV 170 (338)
Q Consensus 100 -~~~~hg~dGlg~~~~p~~~--------~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iv 170 (338)
.+..||.+|+++..+|.+. ..+..++|+++|+++++++|++||||++|||||||+||+++|++.++||+||
T Consensus 81 ~~~~~~G~~g~~~~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~itiva~GPLTNlA~al~~~P~~~~~i~~iv 160 (318)
T cd02654 81 AWESLYGAYLWQGAWSPEYSDMYTNASIIRNASIPAALFMIEMVRKHPHEVSIVAAGPLTNLALALRIDPDFAPLAKELV 160 (318)
T ss_pred cccccCCCcccCCCCCCCccccccccccCCCCCccHHHHHHHHHHhCCCceEEEECCcHHHHHHHHHHChhHHHhCCEEE
Confidence 1568999999988777654 3445689999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCC-CCC-c-cccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 019632 171 VLGGAFFALG-NVN-P-AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYR 247 (338)
Q Consensus 171 iMGG~~~~~G-N~~-~-~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 247 (338)
+|||++...| |++ + .||||||+|||||++||+|++|++|+|||+|+++.+++++++.+ ++.++|+.+++++|.
T Consensus 161 iMGG~~~~~g~~~~~~~~aEfN~~~DPeAA~iVl~s~~~~~~v~ldvT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 236 (318)
T cd02654 161 IMGGYLDDIGEFVNRHYASDFNLIMDPEAASIVLTAPWKSITIPGNVTNRTCLTPEQIKAD----DPLRDFIRETLDLPI 236 (318)
T ss_pred EeCCCccCCCCcCCCCCCcceeeccCHHHHHHHHhCCCCEEEeCcccccceeCCHHHHhcc----CHHHHHHHHHHHHHH
Confidence 9999986656 676 3 89999999999999999999999999999999999999998755 567899999999999
Q ss_pred HhhhhcCCC-ccccccccchhhhhccCCeeeeEEe-eEEEEecCCcceeEEEecCCcccccCCCCC-CCCCcEEEeecCH
Q 019632 248 DWHVKSDGV-HGIFLHDPVSFVALVRPDLFTFKKG-VVRVETQGICMGHTLMDQGLKRWNVSNPWT-GYSPVSVAWTVNV 324 (338)
Q Consensus 248 ~~~~~~~~~-~~~~l~D~la~a~~~~P~l~~~~~~-~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~-~~~~v~v~~~vD~ 324 (338)
+++.+.++. .++++||++|++++++|++|++++. +|+||++|.+||+|++|+....+ +. ..+|++|+.++|.
T Consensus 237 ~~~~~~~~~~~g~~~hD~lava~~~~P~l~~~~~~~~v~Ve~~~~~~G~tv~d~~~~~~-----~~~~~~n~~v~~~vD~ 311 (318)
T cd02654 237 DYAKEFVGTGDGLPMWDELASAVALDPELATSSETFYIDVQTDSDGGGQLIWPEDLLLA-----KGLRPYHVKVITAVDV 311 (318)
T ss_pred HHHHHhcCCCCCCCCchHHHHHHHcCHhHccceEeEEEEEEeCCCcCCeEEeecccCCC-----CCCCCCCCEEeecccH
Confidence 888765543 6899999999999999999998888 99999987799999999753211 11 2469999999999
Q ss_pred HHHHHHH
Q 019632 325 DKVLNYI 331 (338)
Q Consensus 325 ~~f~~~l 331 (338)
++|+++|
T Consensus 312 ~~f~~~~ 318 (318)
T cd02654 312 AAFLNLI 318 (318)
T ss_pred HHHHhhC
Confidence 9999875
No 12
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=100.00 E-value=5.9e-73 Score=534.56 Aligned_cols=295 Identities=39% Similarity=0.651 Sum_probs=267.6
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccccccC
Q 019632 26 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHG 105 (338)
Q Consensus 26 vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~hg 105 (338)
||||||+|+||++||++|+++|+++|+|||+++||++++++++|++++|+++|+.+||||+|+..|+.++........||
T Consensus 1 vIiDtD~g~DDa~Al~~~l~~~~~~l~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~iPV~~G~~~pl~~~~~~~~~~~~g 80 (295)
T cd00455 1 VILDTDPGIDDAFALMYALLHPEIELVGIVATYGNVTLEQATQNAAYLLELLGRLDIPVYAGATRPLTGEIPAAYPEIHG 80 (295)
T ss_pred CEEeCCCCHHHHHHHHHHhcCCCceEEEEEeccCCccHHHHHHHHHHHHHHhCCCCCCEeCCCCCCCCCCCCCCCcccCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999998764333455788
Q ss_pred CCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCcc
Q 019632 106 SDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPA 185 (338)
Q Consensus 106 ~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~ 185 (338)
.+|.+. .+.+......++|+++|+++++++|++++|+++|||||||+||+++|++.++||+||+|||++..+||++|.
T Consensus 81 ~~g~~~--~~~~~~~~~~~~a~~~i~~~~~~~~~~v~ila~GplTNlA~al~~~p~~~~~i~~iviMGG~~~~~Gn~~~~ 158 (295)
T cd00455 81 EGGLGL--PIPPIIEADDPEAVQLLIDLIRKYPDEITIVALGPLTNLAMAFILDPDIKDRVKEIVIMGGAFLVPGNVTPV 158 (295)
T ss_pred CCCCCC--CCCCCCcCCCcCHHHHHHHHHHhcCCCeEEEECCchHHHHHHHHHChHHHHhCCEEEEcCCccCCCCCCCcc
Confidence 888432 233333445789999999999999999999999999999999999999999999999999999778999999
Q ss_pred ccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCccccccccc
Q 019632 186 AEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPV 265 (338)
Q Consensus 186 aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~D~l 265 (338)
+|||||+|||||++||+|++|++|+|||+|+++.+++++++++.+..++.++|+.+++++|..++.+ ++..++++||++
T Consensus 159 aEfN~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~l 237 (295)
T cd00455 159 AEANFYGDPEAANIVFNSAKNLTIVPLDVTNQAVLTPPMVERIFEQGTSIGLLIKPMIDYYYKAYQK-PGIEGSPIHDPL 237 (295)
T ss_pred chhhcccCHHHHHHHHhCCCCeEEecccceeeEeCCHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc-CCCCcCCCChHH
Confidence 9999999999999999999999999999999999999999999988889999999999999887766 566789999999
Q ss_pred hhhhhccCCeeeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHH
Q 019632 266 SFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYI 331 (338)
Q Consensus 266 a~a~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l 331 (338)
|++++++|++|++++.+++|+++|.++|+|++|+.+. + ..+|++|+.++|.++|+++|
T Consensus 238 Av~~~~~P~~~~~~~~~v~V~~~g~~~G~t~~d~~~~-------~-~~~~~~v~~~~d~~~f~~~~ 295 (295)
T cd00455 238 AVAYLLNPSMFDYSKVPVDVDTDGLTRGQTIADFREN-------P-GNGVTRVAVNLDYPDFIELI 295 (295)
T ss_pred HHHHhcCcccEEEEEEeEEEEeCCCCCceEEEecccC-------C-CCCCcEEEEecCHHHHHhhC
Confidence 9999999999999999999999999999999996532 1 34699999999999999864
No 13
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=100.00 E-value=4.9e-74 Score=546.27 Aligned_cols=305 Identities=45% Similarity=0.740 Sum_probs=260.4
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhC-CCCCCcccCCCCCCCCCCCCccc
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG-CPGVPVAEGSPEPLKGGKPRVAE 101 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g-~~dIPV~~Ga~~pl~~~~~~~~~ 101 (338)
++|||||||+|+||++||++||.+|+++|+|||+++||++.+++++|++++|+.+| +.+||||.|+..||.++ .....
T Consensus 1 ~~~viiDtD~g~DD~~Al~~~l~~~~i~i~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~~iPV~~G~~~pl~~~-~~~~~ 79 (312)
T PF01156_consen 1 MKKVIIDTDPGIDDALALALALASPEIEILGITTVFGNVSVEQAARNALRLLELAGGRDDIPVYKGADRPLVRP-PEYAP 79 (312)
T ss_dssp -EEEEEEE--SHHHHHHHHHHHHHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHTTTCSTS-EEEEESS-SSSS-HHHHH
T ss_pred CcEEEEECCCChhHHHHHHHHHhCCCcEEEEEEEecCCcchHHHHHHHHHHHHHhcCCCccceeecchhhhhcc-ccchh
Confidence 57999999999999999999999999999999999999999999999999999996 77899999999999863 34567
Q ss_pred cccCCCCCCCCCCCCCCCCC--CCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCC
Q 019632 102 FAHGSDGMGNISLTPPKAKK--CDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 179 (338)
Q Consensus 102 ~~hg~dGlg~~~~p~~~~~~--~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 179 (338)
++||.+|||+..+|.+...+ ...+|+++|+++++++|++|+||++|||||||+||+++|++.++|++||+|||++...
T Consensus 80 ~~~g~~gl~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GplTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 159 (312)
T PF01156_consen 80 EIHGEDGLGDASLPEPEDEPYPSDEDAVDFIIELLKAYPGEVTIVAIGPLTNLALALRRDPEIAKKIKRIVIMGGAFDGP 159 (312)
T ss_dssp HHHTTTSSTSS-HHSSSCHCHBHSSBHHHHHHHHHHHSSSTEEEEECS-SHHHHHHHHHHGGHHGGEEEEEEE---SSS-
T ss_pred hcccccCCCcccCcccccccccccccHHHHHHHHHHhcCCcEEEEecCcchhHHHHHHhChHHHhhceEEEEECCccccC
Confidence 89999999997766655443 5788999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHh-cCCcHHHHHHHHHHHHHHhhhhcCCCcc
Q 019632 180 GNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQ-SKGRYVQLLGDMCKFYRDWHVKSDGVHG 258 (338)
Q Consensus 180 GN~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 258 (338)
||.+|.+|||||+|||||++||+|++|++++|||+|+++.+++++++++.+ ..+++++|+.++++.|..++++. ..+
T Consensus 160 Gn~~~~aE~N~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 237 (312)
T PF01156_consen 160 GNVTPVAEFNFYCDPEAAQIVLESGIPITLVPLDVTHQVLLTPEFLDRLRAQSGSPLARFLRDLLRFYFDFYRDG--SDG 237 (312)
T ss_dssp -SSSSSC-HHHHHSHHHHHHHHCSSS-EEEE-HHHHTTSEEEHHHHHHHHHTCTCHHHHHHHHHHHHHHHHHHHH--SSS
T ss_pred CCCCccCCcCcccCHHHHHHHhhcCCCeEEEecCccccccCCHHHHHHHHhcCcchHHHHHHHHHHHHHhhhhhc--cCC
Confidence 999999999999999999999999999999999999999999999999987 56899999999999998877643 468
Q ss_pred ccccccchhhhh-ccCCeee-eEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHH
Q 019632 259 IFLHDPVSFVAL-VRPDLFT-FKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLL 335 (338)
Q Consensus 259 ~~l~D~la~a~~-~~P~l~~-~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l 335 (338)
+++||++|++++ ++|++|. +++.+++|+++| .+||+|++|+.. +.+.+|++|+.++|.++|+++|+++|
T Consensus 238 ~~~~D~la~~~~~~~P~~~~~~~~~~v~V~~~~~~~~G~t~~d~~~--------~~~~~~~~v~~~vd~~~f~~~~~~~l 309 (312)
T PF01156_consen 238 FPLHDPLAAAYAELDPELFTEFERGPVDVETDGGLTRGQTVVDREG--------SSGGPNVRVATDVDVDAFFDLLLERL 309 (312)
T ss_dssp EE-HHHHHHHHH-H-GGGEEEEEEEEEEEESSSSTTTTEEEEETTS--------TTSSECEEEEEEE-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHhCCccceecceEEEEEEECCCCCCceEEEeccc--------cCCCCcEEEeeecCHHHHHHHHHHHH
Confidence 999999999999 9999976 889999999997 899999998621 24578999999999999999999999
Q ss_pred hcC
Q 019632 336 MKQ 338 (338)
Q Consensus 336 ~~~ 338 (338)
.+.
T Consensus 310 ~~~ 312 (312)
T PF01156_consen 310 ARA 312 (312)
T ss_dssp HH-
T ss_pred hcC
Confidence 763
No 14
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=100.00 E-value=2.4e-72 Score=532.41 Aligned_cols=290 Identities=23% Similarity=0.348 Sum_probs=257.4
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEee--cCCCChHHHHHHHHHHHHHhCC-CCCCcccCCCCCCCCCCCCcc
Q 019632 24 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTI--FGNVTTEDATRNALTLCEMAGC-PGVPVAEGSPEPLKGGKPRVA 100 (338)
Q Consensus 24 ~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v--~Gn~~~~~~~~na~~ll~~~g~-~dIPV~~Ga~~pl~~~~~~~~ 100 (338)
+|||||||+|+||++||+|||++|+++|+|||++ +||++.+++++|++++|+.+|+ .+||||+|+..||... ...
T Consensus 1 ~~vIiDtD~g~DDa~Al~~al~~p~i~l~gIt~v~~~GN~~~~~~~~na~~ll~~~g~~~dIPV~~Ga~~pL~~~--~~~ 78 (312)
T cd02647 1 KNVIFDHDGNVDDLVALLLLLKNEKVDLKGIGVSGIDADCYVEPAVSVTRKLIDRLGQRDAIPVGKGGSRAVNPF--PRS 78 (312)
T ss_pred CCEEEeCCCCchHHHHHHHHhhCCCcceEEEEEecCcCCccHHHHHHHHHHHHHHhCCCCCCCEEeCCCcCcccC--ccc
Confidence 5899999999999999999999999999999999 9999999999999999999999 8999999999999431 123
Q ss_pred ccccCCCCCCCCCCC----CCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCC
Q 019632 101 EFAHGSDGMGNISLT----PPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAF 176 (338)
Q Consensus 101 ~~~hg~dGlg~~~~p----~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~ 176 (338)
...|+.+|++....+ .+...+...+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++
T Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~ 158 (312)
T cd02647 79 WRRDAAFSVDHLPILNERYTVETPLAEETAQLVLIEKIKASLEPVTLLVTGPLTNLARALDSDPDISSNIEEVYIMGGGV 158 (312)
T ss_pred cccccccCcCcCCCCccccCCCCCcCcchHHHHHHHHHHhCCCCEEEEEcccHHHHHHHHHHChHHHhhcCEEEEeCCcc
Confidence 345666666543221 1222334678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-----CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHH----HHHHHHhcCCcHHHHHHHHHHHHH
Q 019632 177 FALGNV-----NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDA----DFLELRQSKGRYVQLLGDMCKFYR 247 (338)
Q Consensus 177 ~~~GN~-----~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~----~~~~l~~~~~~~~~~l~~~~~~~~ 247 (338)
..+||+ +|.||||||+|||||++||+|++|++|+|||+|+++.++++ +++++.+..++.++|+.+++++|.
T Consensus 159 ~~~GN~~~~~~tp~aEfNi~~DPeAA~iV~~s~~~i~~vpldvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (312)
T cd02647 159 DAPGNVFTPPSNGTAEFNIFWDPLAAKTVFDSGLKITLVPLDATNTVPLTREFLETDRQRFAAQRLPASDLAGQGYALVK 238 (312)
T ss_pred CCCCccccCCCCCCcccccccCHHHHHHHHhCCCCEEEEccccccccccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 889998 99999999999999999999999999999999999999999 666777777899999999999998
Q ss_pred HhhhhcCCCccccccccchhhhhccCCeeeeEEee-EEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHH
Q 019632 248 DWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGV-VRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDK 326 (338)
Q Consensus 248 ~~~~~~~~~~~~~l~D~la~a~~~~P~l~~~~~~~-v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~ 326 (338)
+++ +..++++||++|++++++|++|+.++.+ ++||++|.+||||++|.+ .+|++|++++|.+.
T Consensus 239 ~~~----~~~g~~~hD~lava~~~~p~~~~~~~~~~v~Ve~~g~t~G~Tv~d~~------------~~n~~v~~~vd~~~ 302 (312)
T cd02647 239 PLE----FNSTYYMWDVLTTLVLGAKEVDNTKESLILEVDTDGLSAGQTVTSPN------------GRPLTLVTSNNSYG 302 (312)
T ss_pred hhc----CCCCccccHHHHHHHHcCchhcccccccceEEEECCCCCceEEEcCC------------CCCeEEEEeeCccc
Confidence 876 4578899999999999999999999998 999999999999999953 36899999999987
Q ss_pred HHHHH
Q 019632 327 VLNYI 331 (338)
Q Consensus 327 f~~~l 331 (338)
..+.|
T Consensus 303 ~~~~~ 307 (312)
T cd02647 303 SNRFF 307 (312)
T ss_pred chhhh
Confidence 44443
No 15
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=4.3e-71 Score=526.06 Aligned_cols=277 Identities=34% Similarity=0.493 Sum_probs=245.2
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCC-CeEEEEEeecCCCChHHHHHHHHHHHHHhCCC------------------CCC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCP------------------GVP 83 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~-v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~------------------dIP 83 (338)
++|||||||+|+||++||++||++|+ ++|+|||+|+||++++++++|++++|+++|+. +||
T Consensus 1 p~kiIiDtDpG~DDa~AillAl~~p~~~ev~gITtv~GN~~~~~~~~Nal~~l~~~gr~~~~~~~~~~~~~~~~~~~~iP 80 (367)
T cd02648 1 PHPIIIDTDPGVDDVLAILLALSSPEEVDVALISLTFGNTTLDHALRNVLRLFHVLERERAWRATPGVRYRAFSADAEKP 80 (367)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCcCHHHHHHHHHHHHHHhCCcccccccccccccccccCCCCC
Confidence 46999999999999999999999999 99999999999999999999999999999987 699
Q ss_pred -cccCCCCCCCCCCCCccccccCCCCCCCCCC--CCC----C--------CCCCCccHHHHHHHHHHcCCC-cEEEEEec
Q 019632 84 -VAEGSPEPLKGGKPRVAEFAHGSDGMGNISL--TPP----K--------AKKCDKNASEFLVDKVSEYPG-EVSILALG 147 (338)
Q Consensus 84 -V~~Ga~~pl~~~~~~~~~~~hg~dGlg~~~~--p~~----~--------~~~~~~~a~~~i~~~~~~~p~-~vtila~G 147 (338)
||.|+..||.+.. ..+.++||.||||+..+ |.+ . ..+...+|+++|+++++++|+ +|+||++|
T Consensus 81 ~V~~Ga~~PL~~~~-~~a~~~HG~dGlgg~~~~~p~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~~itivalG 159 (367)
T cd02648 81 IVASGSDQPLEGER-LTASYFHGRDGLSGVHWLHPDFTPVETWIPEIVAPLTPSDKPAYDVILDILREEPDHTVTIAALG 159 (367)
T ss_pred EEEcCCCcccCCCC-cccCccCCCCCCCCccccCCccccccccccccccccCcCCccHHHHHHHHHHhCCCCcEEEEEcc
Confidence 9999999998753 45678999999999864 211 1 234568899999999999995 69999999
Q ss_pred chhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhc----------CCcEEEEecccccc
Q 019632 148 PLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS----------GANIAVVGINITTQ 217 (338)
Q Consensus 148 PLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s----------~~~i~~v~ldvt~~ 217 (338)
||||||+||+++|++.++||+||+|||++..+||++|.+|||||+|||||++||++ ++|++|+|||+|++
T Consensus 160 PLTNiA~al~~~P~~~~~Ik~IviMGG~~~~~GN~tp~aEfNi~~DPeAA~iV~~~~~~~~~~s~~~~~i~mvpLDvT~~ 239 (367)
T cd02648 160 PLTNLAAAARKDPETFAKVGEVVVMGGAIDVPGNTSPVAEFNCFADPYAAAVVIDEPPSTAPEARRKLPLQVFPLDITTG 239 (367)
T ss_pred cHHHHHHHHHHChHHHhhhcEEEEeCCcccCCCCCCccchhhcccCHHHHHHHHhccccccccccCCCCeEEEeecCCCC
Confidence 99999999999999999999999999999888999999999999999999999984 45999999999999
Q ss_pred cccCHHHH-----HHHHh--cCCcHHHHHHHH-----HHHHHHhhhhcCCCccc---cccccchhhhhccCC--------
Q 019632 218 VKLTDADF-----LELRQ--SKGRYVQLLGDM-----CKFYRDWHVKSDGVHGI---FLHDPVSFVALVRPD-------- 274 (338)
Q Consensus 218 ~~~~~~~~-----~~l~~--~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~---~l~D~la~a~~~~P~-------- 274 (338)
+.++.+++ +.+.+ .+++.++|+.++ +++|++++.+.++..++ ++||++|++++++|+
T Consensus 240 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lHD~lava~~i~p~~~~~~~~~ 319 (367)
T cd02648 240 HTLPYSSLFATYVTPRDAPERGSPLARWLEHVFISTFLTHPRAFTPEEFLPDRSELFEMHDPLAVWYAIFADMPATGSID 319 (367)
T ss_pred eeeCHHHhhhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCcHHHhHhhcCcccccccccc
Confidence 99999774 44555 568899965554 44888887765554555 899999999999999
Q ss_pred --eeeeEEeeEEEEecC-CcceeEEEecC
Q 019632 275 --LFTFKKGVVRVETQG-ICMGHTLMDQG 300 (338)
Q Consensus 275 --l~~~~~~~v~V~~~g-~~~G~tv~d~~ 300 (338)
+|++++.+|+||++| .+||+|++|++
T Consensus 320 ~~~~~~~~~~v~Ve~~g~~trG~tV~D~~ 348 (367)
T cd02648 320 GNGWKHTPRDFRVETSGQWTRGMCVVDRR 348 (367)
T ss_pred cceEEEEEecEEEEeCCCCCCceEEEecC
Confidence 899999999999997 79999999965
No 16
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.9e-57 Score=427.46 Aligned_cols=317 Identities=37% Similarity=0.490 Sum_probs=267.6
Q ss_pred CccccCCCCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCC
Q 019632 14 GVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLK 93 (338)
Q Consensus 14 ~~~~~~~~~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~ 93 (338)
....+.+..+++||||||+|.||++||++++.+|+++++|+|+|+||+.++++++||+++|+++||.+||||.|+.+||.
T Consensus 12 ~~~~~~~~~~~~iiid~D~~~Dd~~al~la~~~~~~~ilglTtv~Gn~~~~~t~~NA~~~L~l~~r~dIPV~~Ga~kpl~ 91 (350)
T KOG2938|consen 12 IFELDAASYKRKIIIDCDPGSDDAFALLLALLGPELEILGLTTVHGNVTVEDTDRNALDLLSLLGRLDIPVYEGAAKPLI 91 (350)
T ss_pred cccccccccceeEEEeCCCCcccHHHHHHHhcCccceeEeeeEeeCCccHhhhhhhHHHHHHhcCCcCCCchhccccccc
Confidence 33345556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEec
Q 019632 94 GGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLG 173 (338)
Q Consensus 94 ~~~~~~~~~~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMG 173 (338)
+.+...+.++||.||+|+..+|.|+.....+++++++++...++|++||++++|||||||++++++|++.+++|+++|||
T Consensus 92 ~~~~~~a~~~hG~dGl~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~It~va~GPLTNlAla~~~~pd~~~~v~~ivimG 171 (350)
T KOG2938|consen 92 RSPNDWANAFHGIDGLGDILLPPPRDDINVGHGAEFAIEQDIAYPGEITIVAYGPLTNLALALALDPDFLKNVKRIVIMG 171 (350)
T ss_pred CCccchhhhhccccccCCcccCCccccccccccHHHHHHHhhcCCCCceEEEeccchHHHHHhhcChhHhhccccEEEec
Confidence 98766889999999999988888887778899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccccCCHHHHHHHHhcC-CcEEEEecccccccccCHHHHHHHHh---cCCcHHHHHHHHHHHHHHh
Q 019632 174 GAFFALGNVNPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQVKLTDADFLELRQ---SKGRYVQLLGDMCKFYRDW 249 (338)
Q Consensus 174 G~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~-~~i~~v~ldvt~~~~~~~~~~~~l~~---~~~~~~~~l~~~~~~~~~~ 249 (338)
|++.+.||+++.||||||.|||||++||+++ .+++++||++|++..++....-.+.. ..+++..|+.....++...
T Consensus 172 G~~~~~gnv~~~AefN~~~DPeAA~~vl~~~k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T KOG2938|consen 172 GNYYGNGNVTHGAEFNFYRDPEAAHTVLTRTKDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQVY 251 (350)
T ss_pred cccccccCcCccccccccCChHHHHHHHhcCCCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhcc
Confidence 9999889999999999999999999999997 57889999999999998766655543 2334444443333332221
Q ss_pred hhhcCCCccccccccchhhhhccCCeeeeEEe--eEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHH
Q 019632 250 HVKSDGVHGIFLHDPVSFVALVRPDLFTFKKG--VVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKV 327 (338)
Q Consensus 250 ~~~~~~~~~~~l~D~la~a~~~~P~l~~~~~~--~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f 327 (338)
...+|...++.+|..+++.++.|+.+..+.. .+.+.+..+++|+.++++-.. . .....+++....+|..+|
T Consensus 252 -~~~~G~~~~~~~d~~~~a~~i~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~--~~~~~~v~~~~~~~~~~f 324 (350)
T KOG2938|consen 252 -NGAYGNIFTPYPDNIYVAFAIFPDPLAAKTVYVSVDVLLDSPTRGQMVVDHLPA----K--LDYPANVTKITTVDVVKF 324 (350)
T ss_pred -cccCCccCCCCCcHHHHHHHhhhhhhhhhhhhheeeeeecCcceeeeEEecchh----h--hcccccceeecccccchh
Confidence 2224556667899999999999998876543 466667778999999984211 0 123568999999999999
Q ss_pred HHHHHHHHhc
Q 019632 328 LNYIKRLLMK 337 (338)
Q Consensus 328 ~~~l~~~l~~ 337 (338)
+..+...+.+
T Consensus 325 ~~~~~~~l~~ 334 (350)
T KOG2938|consen 325 LTLRIQVLGR 334 (350)
T ss_pred eehhhhhhhh
Confidence 9998887754
No 17
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.1e-47 Score=357.28 Aligned_cols=239 Identities=27% Similarity=0.405 Sum_probs=183.2
Q ss_pred EEEecCCC--chHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCC-Ccccc
Q 019632 26 LIIDTDPG--IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKP-RVAEF 102 (338)
Q Consensus 26 vIiDtD~G--~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~-~~~~~ 102 (338)
||||||+| +||++||+||+++|+++|+|||+++||++.+ .|+..++.++|+.+|||+. .+|+..... ....+
T Consensus 1 vIlDTD~G~DiDDa~Al~lal~~p~~~llgIT~~~GN~~~~---~~~~~~n~~~gr~dIPVg~--~~~~~~~~~~~~~~~ 75 (293)
T cd02652 1 LILDTDIGGDPDDALALALAHALQKCDLLAVTITLADASAR---RAIDAVNRFYGRGDIPIGA--DYHGWPEDAKDHAKF 75 (293)
T ss_pred CEEeCCCCCChHHHHHHHHHhhCCCCceEEEEecCCcccHh---HHHHHHHHhcCCCCCcEee--CCCCCCCccccccce
Confidence 69999999 6999999999999999999999999999987 5666677789999999965 455544211 12223
Q ss_pred ccCCCCCCCCCCCCCC-CCCCCccHHHHHHHHHHcC-CCcEEEEEecchhHHHHHHhh------Ccch-hhccceEEEec
Q 019632 103 AHGSDGMGNISLTPPK-AKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR------DSSF-ASKVKNIVVLG 173 (338)
Q Consensus 103 ~hg~dGlg~~~~p~~~-~~~~~~~a~~~i~~~~~~~-p~~vtila~GPLTNlA~al~~------~P~~-~~~i~~iviMG 173 (338)
.||.++ ++.+. ..+...+|+++|+++++++ |++||||++|||||||++|++ +|++ .++||+||+||
T Consensus 76 ~~~~~~-----~~~~~~~~~~~~~A~~~i~~~l~~~~~~~vtivaiGplTNlA~ll~~~~d~l~~pel~~~kvk~lviMG 150 (293)
T cd02652 76 LLEGDR-----LHHDLESAEDALDAVKALRRLLASAEDASVTIVSIGPLTNLAALLDADADPLTGPELVRQKVKRLVVMG 150 (293)
T ss_pred eCCCCC-----CCCcccccccCccHHHHHHHHHHhcCCCCEEEEEcccHHHHHHHHHhccccccCcHHHHhhCCEEEEeC
Confidence 344333 32222 1223568999999999998 789999999999999999999 9999 58999999999
Q ss_pred CCCC-CCCCCCccccccccCCHHHHHHHHhc----CCcEEE--EecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHH
Q 019632 174 GAFF-ALGNVNPAAEANIYGDPEAADVVFTS----GANIAV--VGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFY 246 (338)
Q Consensus 174 G~~~-~~GN~~~~aEfN~~~DPeAA~~Vl~s----~~~i~~--v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 246 (338)
|++. ..||++ .+||||++||+||++||++ ++|++| +++|+|+++......... . .|-..+.+.|
T Consensus 151 G~~~~~~Gn~~-~aE~N~~~Dp~AA~~V~~~~~~~g~p~~~V~~~~ev~~~~~~~~~~~~~-----~---~~~~p~~~~y 221 (293)
T cd02652 151 GAFYDPDGNVQ-HREYNFVTDPKAAQRVAGRAQHLGIPVRIVWSGYELGEAVSYPHVLVIA-----H---PFNTPVFAAY 221 (293)
T ss_pred CCccCCCCCcc-hhhhhcccCHHHHHHHHhcccccCCCEEEEecCHHHhccccCchhhhhc-----c---cccchHHHHH
Confidence 9983 469988 9999999999999999999 899998 699999998776642111 1 1111333444
Q ss_pred HHhhhhcCCCccccccccchhhhhccCC--eeeeEE-----eeEEEEecC
Q 019632 247 RDWHVKSDGVHGIFLHDPVSFVALVRPD--LFTFKK-----GVVRVETQG 289 (338)
Q Consensus 247 ~~~~~~~~~~~~~~l~D~la~a~~~~P~--l~~~~~-----~~v~V~~~g 289 (338)
..+. ...++||++|++|+++|+ +|..++ ..|.|..+|
T Consensus 222 ~~~~------~~~~~wD~~t~l~av~~~~~~F~~~~~~~g~g~v~~~~~G 265 (293)
T cd02652 222 WPRS------HRRPLWDPLTLLAAVRGGGMLFDLREVQLGPGRVEVDSSG 265 (293)
T ss_pred Hhcc------CCccchHHHHHHHeeCCcCCccccccccCCCceEEEcCCC
Confidence 3321 126899999999999997 787654 345555444
No 18
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=98.23 E-value=1.4e-06 Score=79.93 Aligned_cols=137 Identities=20% Similarity=0.259 Sum_probs=79.9
Q ss_pred eEEEecCCC--chHHHHHHHHHc-CCCCeEEEEEeecCCC-ChHHHHHHHHHHHHHhCC------CCCCcccCCCCCCCC
Q 019632 25 KLIIDTDPG--IDDSMTILMAFQ-TPELEILGLTTIFGNV-TTEDATRNALTLCEMAGC------PGVPVAEGSPEPLKG 94 (338)
Q Consensus 25 ~vIiDtD~G--~DD~~AL~~al~-~~~v~v~gIt~v~Gn~-~~~~~~~na~~ll~~~g~------~dIPV~~Ga~~pl~~ 94 (338)
||||=||+| +||...|+-+|. +.++++.||+++.+-- .-....+.+.++++.+++ ..-|=|+-++. |
T Consensus 1 RviV~TDi~~EpDD~~SlvR~LlYsNe~dieGivattS~~~~~~~~~~~i~~iIdaY~kv~pNL~~H~~~yPs~e~-L-- 77 (260)
T PF07632_consen 1 RVIVLTDIGNEPDDAQSLVRLLLYSNEFDIEGIVATTSTWHWSGVHPEWIHRIIDAYEKVYPNLNKHAPGYPSPEY-L-- 77 (260)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHHTGGGSEEEEEEE--BTTB------HHHHHHHHHHHHHHHHHTTTSTT---HHH-H--
T ss_pred CEEEeCCCCCCCchHHHHHHHHHhccccceeEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH-H--
Confidence 699999995 999999987665 6689999999887511 111233456666666552 11111111000 0
Q ss_pred CCCCccccccCCC--CCCCCCCCCCCCCCCCccHHHHHHHHHHcC-CCcEEEEEecchhHHHHHHhh---------Ccch
Q 019632 95 GKPRVAEFAHGSD--GMGNISLTPPKAKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR---------DSSF 162 (338)
Q Consensus 95 ~~~~~~~~~hg~d--Glg~~~~p~~~~~~~~~~a~~~i~~~~~~~-p~~vtila~GPLTNlA~al~~---------~P~~ 162 (338)
..-...|.- |+.. .+...++++.++|++.+.+. +.+|.|++-|-...||.||.. .+++
T Consensus 78 ----~s~vk~G~~~yg~~~------~G~~~~s~GS~lIi~~~~~~d~rPLwi~~WGG~ntlAqAL~~i~~~~~~~~~~~~ 147 (260)
T PF07632_consen 78 ----RSIVKQGNPVYGMPA------VGEGKDSEGSELIIEALDKDDPRPLWILVWGGTNTLAQALWDIKETRSPEEAARF 147 (260)
T ss_dssp ----HHTEEE--SS-GGGG-------STT---HHHHHHHHHHHSS-SS-EEEEESS-SHHHHHHHHHHHHHS-HHHHHHH
T ss_pred ----HHHHccCCcccCccc------CCCCCCChHHHHHHHHHcCCCCCCEEEEecCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 000011211 1111 11112478999999999886 789999999999999999998 7889
Q ss_pred hhccceEEEecCC
Q 019632 163 ASKVKNIVVLGGA 175 (338)
Q Consensus 163 ~~~i~~iviMGG~ 175 (338)
.+|+ ||+..++-
T Consensus 148 ~~Kl-rvy~I~dQ 159 (260)
T PF07632_consen 148 VSKL-RVYSISDQ 159 (260)
T ss_dssp HHTE-EEEEES--
T ss_pred HhhE-EEEeccCC
Confidence 9999 68877654
No 19
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=73.85 E-value=1.8 Score=41.99 Aligned_cols=85 Identities=27% Similarity=0.331 Sum_probs=64.6
Q ss_pred CccHHHHHHHHHHcCC---CcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCC------CCCC------Ccccc
Q 019632 123 DKNASEFLVDKVSEYP---GEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFA------LGNV------NPAAE 187 (338)
Q Consensus 123 ~~~a~~~i~~~~~~~p---~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~------~GN~------~~~aE 187 (338)
+.+|++-..+.. +.| .++.+...+++|+.+.....++.-...+.+.++++|.... .||. ...++
T Consensus 191 DPeAA~~vl~~~-k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~a 269 (350)
T KOG2938|consen 191 DPEAAHTVLTRT-KDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQVYNGAYGNIFTPYPDNIYVA 269 (350)
T ss_pred ChHHHHHHHhcC-CCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhcccccCCccCCCCCcHHHHH
Confidence 566777554444 334 4578889999999999998888888888899999998643 2443 35789
Q ss_pred ccccCCHHHHHHHHhcCCcEE
Q 019632 188 ANIYGDPEAADVVFTSGANIA 208 (338)
Q Consensus 188 fN~~~DPeAA~~Vl~s~~~i~ 208 (338)
||++-||-+++.++.+..-.+
T Consensus 270 ~~i~~d~~~~~~~~~~~~~~~ 290 (350)
T KOG2938|consen 270 FAIFPDPLAAKTVYVSVDVLL 290 (350)
T ss_pred HHhhhhhhhhhhhhheeeeee
Confidence 999999999999888744333
No 20
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=73.74 E-value=3.7 Score=35.58 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.5
Q ss_pred HHHHHHHcCCCCeEEEEEeecCCCCh
Q 019632 38 MTILMAFQTPELEILGLTTIFGNVTT 63 (338)
Q Consensus 38 ~AL~~al~~~~v~v~gIt~v~Gn~~~ 63 (338)
.||.+.+.+|+++|+|+..|..|+..
T Consensus 72 ~Al~~v~~h~~IeVLG~iAVASnT~~ 97 (180)
T PF14097_consen 72 QALEYVANHPDIEVLGAIAVASNTHG 97 (180)
T ss_pred HHHHHHHcCCCceEEEEEEEEecCCC
Confidence 68999999999999999999988754
No 21
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=71.00 E-value=6.5 Score=29.89 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=29.9
Q ss_pred eEEEecCCCchH-HHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcc
Q 019632 25 KLIIDTDPGIDD-SMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 85 (338)
Q Consensus 25 ~vIiDtD~G~DD-~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~ 85 (338)
.+|||+-||..| .++++-.+. .-..+-|| +.-.. +..-++|.++++.+..+||.
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~--~~g~ivVT-TPq~l----a~~dv~r~~~~~~~~~vpil 57 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLP--IDGAIVVT-TPQEL----ALADVRRAIDMFRKLNVPIL 57 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH----SEEEEEE--CCC------HHHHHHHHHHHHCTT-EEE
T ss_pred EEEEeCCCCCCcHHHHHHHhCC--CCeEEEEe-CCHHH----HHHHHHHHHHHHHhcCCCcE
Confidence 589999999655 466666654 22233333 33333 34567788888888889975
No 22
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=64.96 E-value=27 Score=29.78 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcCC
Q 019632 126 ASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 205 (338)
Q Consensus 126 a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~ 205 (338)
-...|++.+...+ ++||++-.. ++|..|...|++ +|+++||.+.. +...+..|.|.+.+-+-..
T Consensus 30 T~~~la~~L~~~~-~ltVvTnsl--~ia~~l~~~~~~-----~vi~~GG~~~~--------~~~~~~G~~a~~~l~~~~~ 93 (161)
T PF00455_consen 30 TTLELAKYLPDKK-NLTVVTNSL--PIANELSENPNI-----EVILLGGEVNP--------KSLSFVGPIALEALRQFRF 93 (161)
T ss_pred HHHHHHHHhhcCC-ceEEEECCH--HHHHHHHhcCce-----EEEEeCCEEEc--------CCCcEECchHHHHHHhhcc
Confidence 3556777777664 799998763 577788888844 79999999963 4445778888888877777
Q ss_pred cEEEEeccc
Q 019632 206 NIAVVGINI 214 (338)
Q Consensus 206 ~i~~v~ldv 214 (338)
++.+++.+-
T Consensus 94 d~afi~~~g 102 (161)
T PF00455_consen 94 DKAFIGADG 102 (161)
T ss_pred ceEEecccE
Confidence 888877764
No 23
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=63.81 E-value=32 Score=33.56 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=45.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecC------CCChHHHHHHHHHHHHHhC
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFG------NVTTEDATRNALTLCEMAG 78 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~G------n~~~~~~~~na~~ll~~~g 78 (338)
+++||++=.=.|+|-++|..++... ..+|+||+--.+ .+..++-.+.|.++.+.+|
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LG 63 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLG 63 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHc-CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhC
Confidence 5789999999999999987777655 799999996532 3566677788999998888
No 24
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=61.81 E-value=25 Score=34.30 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=39.4
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCC--------hHHHHHHHHHHHHHhCCCCCCcc
Q 019632 24 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT--------TEDATRNALTLCEMAGCPGVPVA 85 (338)
Q Consensus 24 ~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~--------~~~~~~na~~ll~~~g~~dIPV~ 85 (338)
+||++=.-.|+|-++|..++... ..+|.||+....+.. .++....|+++.+.+| ||.+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~-G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~Lg---Ip~~ 66 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ-GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLG---IPHY 66 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC-T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT-----EE
T ss_pred CeEEEEccCCHHHHHHHHHHHhh-cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcC---CCEE
Confidence 57899999999999998888765 699999998866542 2345677888888877 6654
No 25
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=58.30 E-value=40 Score=31.43 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcCC
Q 019632 126 ASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 205 (338)
Q Consensus 126 a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~ 205 (338)
-...|++.+... .++||++... ++|..|..+|++ ++++.||.+. .+.+....|.|.+.+=+-.+
T Consensus 117 T~~~la~~L~~~-~~ltVvTnsl--~ia~~l~~~~~~-----~v~llGG~~~--------~~~~~~~G~~a~~~l~~~~~ 180 (269)
T PRK09802 117 TTFEIARLMRKH-TDVIAMTNGM--NVANALLEAEGV-----ELLMTGGHLR--------RQSQSFYGDQAEQSLQNYHF 180 (269)
T ss_pred HHHHHHHhcCcC-CCeEEEeCCH--HHHHHHHhCCCC-----EEEEECCEEe--------cCCCceECHHHHHHHHhccC
Confidence 344566666433 2488888664 566777777764 6999999996 24456788999888877677
Q ss_pred cEEEEeccc
Q 019632 206 NIAVVGINI 214 (338)
Q Consensus 206 ~i~~v~ldv 214 (338)
...+++.+-
T Consensus 181 d~afig~~g 189 (269)
T PRK09802 181 DMLFLGVDA 189 (269)
T ss_pred CEEEEcCce
Confidence 788877764
No 26
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=56.34 E-value=40 Score=29.75 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=34.8
Q ss_pred CCCceEEEecCCC-------chHHHHHHHHHc-CCCCeEEEEEeecCCCC
Q 019632 21 TNPAKLIIDTDPG-------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 62 (338)
Q Consensus 21 ~~~~~vIiDtD~G-------~DD~~AL~~al~-~~~v~v~gIt~v~Gn~~ 62 (338)
..+.+|.|+.|+| .||+..++-.+. .|.+++.||.|-.|+..
T Consensus 108 ~~~~~v~l~vdtG~~R~G~~~~~~~~l~~~i~~~~~l~l~Gl~th~~~~d 157 (218)
T PF01168_consen 108 GKPLKVHLKVDTGMGRLGVRPEELEELAEAIKALPNLRLEGLMTHFAHAD 157 (218)
T ss_dssp TSTEEEEEEBESSSSSSSBECHHHHHHHHHHHHTTTEEEEEEEEBGSSTT
T ss_pred CCceEEEEeecccccccCCCHHHHHHHHHHHhcCCCceEeeEeccccccC
Confidence 3577899999987 588888887776 78999999999888764
No 27
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=53.92 E-value=54 Score=30.14 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcCC
Q 019632 126 ASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 205 (338)
Q Consensus 126 a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~ 205 (338)
-+..|++.+... ++||++.+. ++|.+|..+|++ ++++.||.+.. +.+.+..|. ++.+-+-..
T Consensus 104 T~~~la~~L~~~--~ltVvTnsl--~ia~~l~~~~~~-----~v~l~GG~~~~--------~~~~~~G~~-~~~l~~~~~ 165 (251)
T PRK13509 104 TAFLLGRELCGK--PVQIITNYL--PLANYLIDQEHD-----SVIIMGGQYNK--------SQSITLSPQ-GSENSLYAG 165 (251)
T ss_pred HHHHHHHHhCCC--CeEEEeCCH--HHHHHHHhCCCC-----EEEEECCeEcC--------CcceeECHH-HHHHHhCcC
Confidence 344566766443 488888776 777778777764 68999999852 345677786 454434456
Q ss_pred cEEEEeccc
Q 019632 206 NIAVVGINI 214 (338)
Q Consensus 206 ~i~~v~ldv 214 (338)
++.+++.+-
T Consensus 166 d~aFig~~g 174 (251)
T PRK13509 166 HWMFTSGKG 174 (251)
T ss_pred CEEEECCCc
Confidence 777776654
No 28
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.57 E-value=35 Score=28.82 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=39.9
Q ss_pred chHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCC
Q 019632 34 IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLK 93 (338)
Q Consensus 34 ~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~ 93 (338)
.|++...+ + ..+++++||++..|- -..-+.-....|+..|..+|.|+.|...|..
T Consensus 52 p~e~v~aA--~-~~dv~vIgvSsl~g~--h~~l~~~lve~lre~G~~~i~v~~GGvip~~ 106 (143)
T COG2185 52 PEEAVRAA--V-EEDVDVIGVSSLDGG--HLTLVPGLVEALREAGVEDILVVVGGVIPPG 106 (143)
T ss_pred HHHHHHHH--H-hcCCCEEEEEeccch--HHHHHHHHHHHHHHhCCcceEEeecCccCch
Confidence 35555443 2 347999999998885 2333556778888999999999988877754
No 29
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=47.85 E-value=45 Score=26.34 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=43.2
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCC
Q 019632 25 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGG 95 (338)
Q Consensus 25 ~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~ 95 (338)
-++++.+...++...-+. ..+.+++++|+...+ .....+++.++.+..+. +++|..|-..+...+
T Consensus 30 v~~l~~~~~~~~~~~~i~---~~~pdiV~iS~~~~~--~~~~~~~~~~~~~~~p~-~~~ivvGG~~~t~~~ 94 (125)
T cd02065 30 VIDLGVDVPPEEIVEAAK---EEDADVVGLSALSTT--HMEAMKLVIEALKELGI-DIPVVVGGAHPTADP 94 (125)
T ss_pred EEEcCCCCCHHHHHHHHH---HcCCCEEEEecchHh--HHHHHHHHHHHHHhcCC-CCeEEEeCCcCCccc
Confidence 345666555555544333 346789999988776 23567777777777754 899999887665543
No 30
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=45.36 E-value=42 Score=31.27 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCC--CCCcccCCCCCCCCC-CCCccccccCCCC--CCCCC------------CCCCCCCCCCccHHHHH
Q 019632 68 RNALTLCEMAGCP--GVPVAEGSPEPLKGG-KPRVAEFAHGSDG--MGNIS------------LTPPKAKKCDKNASEFL 130 (338)
Q Consensus 68 ~na~~ll~~~g~~--dIPV~~Ga~~pl~~~-~~~~~~~~hg~dG--lg~~~------------~p~~~~~~~~~~a~~~i 130 (338)
.-+.++|+.++.- +|-.+-|-..-+-.. -....+.+||.+| ||-+. +......|....+.++|
T Consensus 118 ~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i 197 (304)
T COG2248 118 RRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFI 197 (304)
T ss_pred HHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHHH
Confidence 3466677766621 344444433322111 0133567899986 45321 11111225567788888
Q ss_pred HHHHHcCCCcEEEEEecchh
Q 019632 131 VDKVSEYPGEVSILALGPLT 150 (338)
Q Consensus 131 ~~~~~~~p~~vtila~GPLT 150 (338)
++. .+-.++.-||.|
T Consensus 198 ~e~-----~P~v~ii~GPpt 212 (304)
T COG2248 198 LEK-----RPDVLIIGGPPT 212 (304)
T ss_pred Hhc-----CCCEEEecCCch
Confidence 764 347788899999
No 31
>PRK02628 nadE NAD synthetase; Reviewed
Probab=43.82 E-value=59 Score=34.59 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=48.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHcC------CCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCC--CCCc
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQT------PELEILGLTTIFGNVTTEDATRNALTLCEMAGCP--GVPV 84 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~~------~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~--dIPV 84 (338)
...+|+|---.|+|.+++++++... +..+|+||+. .|..+.+...++|..+.+.+|.+ .||+
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m-p~~~ss~~s~~~a~~la~~LGi~~~~i~I 429 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM-PGFATTDRTKNNAVALMKALGVTAREIDI 429 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC-CCCCCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 3678999999999999888777543 3578999987 77656677888999999999953 3444
No 32
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=41.08 E-value=46 Score=27.55 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=34.9
Q ss_pred cCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCC
Q 019632 45 QTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 92 (338)
Q Consensus 45 ~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl 92 (338)
...+.+++|+|+..|... ...+.+...|+..|..++||..|-.-+.
T Consensus 47 ~~~~adiVglS~L~t~~~--~~~~~~~~~l~~~gl~~v~vivGG~~~i 92 (128)
T cd02072 47 IETDADAILVSSLYGHGE--IDCKGLREKCDEAGLKDILLYVGGNLVV 92 (128)
T ss_pred HHcCCCEEEEeccccCCH--HHHHHHHHHHHHCCCCCCeEEEECCCCC
Confidence 344789999999887643 3356777888888877899999987554
No 33
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=38.54 E-value=1.3e+02 Score=27.03 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCceEEEecCCC---------chHHHHHHHHHc-CCCCeEEEEEeecCCCC
Q 019632 22 NPAKLIIDTDPG---------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 62 (338)
Q Consensus 22 ~~~~vIiDtD~G---------~DD~~AL~~al~-~~~v~v~gIt~v~Gn~~ 62 (338)
.+.+|+|..|+| .+++..++-.+. .|.+++.|+.|-.|...
T Consensus 119 ~~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th~~~~~ 169 (229)
T TIGR00044 119 PPLNVLLQINISDEESKSGIQPEELLELAIQIEELKHLKLRGLMTIGAPTD 169 (229)
T ss_pred CCceEEEEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC
Confidence 346788887773 467887777665 68899999999888754
No 34
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=37.40 E-value=1.4e+02 Score=27.19 Aligned_cols=71 Identities=7% Similarity=0.213 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcCCc
Q 019632 127 SEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGAN 206 (338)
Q Consensus 127 ~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~~ 206 (338)
...|++.+... ++||++-.+ ++|..|...|++ ++++.||.+.. +.+....|.|.+.+=+-..+
T Consensus 105 ~~~l~~~L~~~--~ltVvTNs~--~ia~~l~~~~~~-----~vil~GG~~~~--------~~~~~~G~~a~~~l~~~~~d 167 (240)
T PRK10411 105 CWYLARQLPDI--NIQVFTNSH--PICQELGKRERI-----QLISSGGTLER--------KYGCYVNPSLISQLKSLEID 167 (240)
T ss_pred HHHHHHhhCCC--CeEEEeCCH--HHHHHHhcCCCC-----EEEEECCEEeC--------CCCceECHHHHHHHHhcCCC
Confidence 44455655432 477777654 345556666664 58999999862 44557788888877666677
Q ss_pred EEEEeccc
Q 019632 207 IAVVGINI 214 (338)
Q Consensus 207 i~~v~ldv 214 (338)
..+++.+-
T Consensus 168 ~afis~~g 175 (240)
T PRK10411 168 LFIFSCEG 175 (240)
T ss_pred EEEEecee
Confidence 77776653
No 35
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.60 E-value=60 Score=26.85 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=29.4
Q ss_pred CCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCC
Q 019632 46 TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEP 91 (338)
Q Consensus 46 ~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~p 91 (338)
..+.++++|++..+. ......-..+.|+..|..+++|+.|-..|
T Consensus 51 e~~adii~iSsl~~~--~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 51 EADVHVVGVSSLAGG--HLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HcCCCEEEEcCchhh--hHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 447899999877654 22224445555666676689999986555
No 36
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=35.55 E-value=1.6e+02 Score=26.91 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcCCc
Q 019632 127 SEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGAN 206 (338)
Q Consensus 127 ~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~~ 206 (338)
...|.+.+... .++||++... ++|..|...|++ ++++.||.+.. +.+.+..+.|.+.+=+-.++
T Consensus 104 ~~~la~~L~~~-~~ltvvTnsl--~i~~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~~~~~l~~~~~D 167 (252)
T PRK10681 104 TPWIIEAIDNE-LPFTAVCYSL--NTFLALQEKPHC-----RAILCGGEFHA--------SNAIFKPLDFQQTLDNICPD 167 (252)
T ss_pred HHHHHHhcCCC-CCeEEEECCH--HHHHHHhhCCCC-----EEEEECcEEec--------CcceeeCHHHHHHHHhhCCC
Confidence 44455666432 2488888643 356666666765 68999999852 33557888888777666777
Q ss_pred EEEEeccc
Q 019632 207 IAVVGINI 214 (338)
Q Consensus 207 i~~v~ldv 214 (338)
..+++.+-
T Consensus 168 ~afig~~g 175 (252)
T PRK10681 168 IAFYSAAG 175 (252)
T ss_pred EEEEeCce
Confidence 88887653
No 37
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=35.02 E-value=1.4e+02 Score=26.96 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCC-cEEEEEecchhHHHHHHhhCcchhhccc-eEEEecCCCC-CCCCCCccccccccCCHHHHHHHHh
Q 019632 126 ASEFLVDKVSEYPG-EVSILALGPLTNLALAIKRDSSFASKVK-NIVVLGGAFF-ALGNVNPAAEANIYGDPEAADVVFT 202 (338)
Q Consensus 126 a~~~i~~~~~~~p~-~vtila~GPLTNlA~al~~~P~~~~~i~-~iviMGG~~~-~~GN~~~~aEfN~~~DPeAA~~Vl~ 202 (338)
-++.|.+.....++ ++.++.+|.=-|=...=...++..+..+ .+|||+|--. .+| |.+|+..|.
T Consensus 18 v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG-------------P~kARE~l~ 84 (277)
T COG1927 18 VVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG-------------PKKAREILS 84 (277)
T ss_pred HHHHHHHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC-------------chHHHHHHh
Confidence 45666655544443 5777877765555543333445555555 6778777542 234 888888886
Q ss_pred -cCCcEEEEe
Q 019632 203 -SGANIAVVG 211 (338)
Q Consensus 203 -s~~~i~~v~ 211 (338)
|++|.++++
T Consensus 85 ~s~~Paiiig 94 (277)
T COG1927 85 DSDVPAIIIG 94 (277)
T ss_pred hcCCCEEEec
Confidence 678777664
No 38
>PF09078 CheY-binding: CheY binding; InterPro: IPR015162 The CheY binding domain is found in the response regulator histidine kinase CheA. It adopts a secondary structure consisting of an open-face beta/alpha sandwich, with four antiparallel beta-strands and two alpha-helices. It binds to a corresponding domain on CheY, with subsequent phosphorylation of the CheY Asp57 residue, and activation of CheY, which then affects flagellar rotation []. ; PDB: 1FWP_A 1EAY_C 1A0O_D 1FFG_B 1FFS_B 1FFW_D.
Probab=34.09 E-value=24 Score=25.68 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=20.1
Q ss_pred ccccCCCCCceEEEecCCCchHHHHHHH
Q 019632 15 VVLGSSTNPAKLIIDTDPGIDDSMTILM 42 (338)
Q Consensus 15 ~~~~~~~~~~~vIiDtD~G~DD~~AL~~ 42 (338)
....+....--+|++|+.+.||..|++-
T Consensus 27 ~~~~~~~~~l~~~L~T~~s~DDI~AV~C 54 (65)
T PF09078_consen 27 SDQEKGGDSLEVWLETSVSADDIIAVCC 54 (65)
T ss_dssp EEEEEESSEEEEEE-STSSHHHHHHHHT
T ss_pred EEEecCCCeEEEEECCCCChhhEEEEEE
Confidence 3334445566799999999999999864
No 39
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=33.54 E-value=19 Score=34.94 Aligned_cols=33 Identities=36% Similarity=0.695 Sum_probs=21.8
Q ss_pred HHHHHHcCC-CcEEEEEecchhHHHHHHhhCcchhhccceEE
Q 019632 130 LVDKVSEYP-GEVSILALGPLTNLALAIKRDSSFASKVKNIV 170 (338)
Q Consensus 130 i~~~~~~~p-~~vtila~GPLTNlA~al~~~P~~~~~i~~iv 170 (338)
+.+.+..-| +.++|||+||||.=+ ++++|+++.
T Consensus 119 ireEvt~iP~dg~~vIATGPLTs~~--------La~~i~~lt 152 (439)
T COG1206 119 IREEVTEIPPDGITVIATGPLTSDA--------LAEKIKELT 152 (439)
T ss_pred EccccccCCCCCcEEEecCCCCCHH--------HHHHHHHhh
Confidence 334444445 779999999999644 445666554
No 40
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=33.42 E-value=1.4e+02 Score=25.32 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=35.4
Q ss_pred eEEEecCCCchHHHHHHHHHc-CC----CCeEEEEEeecCCC-ChHHHHHHHHHHHHHhCC
Q 019632 25 KLIIDTDPGIDDSMTILMAFQ-TP----ELEILGLTTIFGNV-TTEDATRNALTLCEMAGC 79 (338)
Q Consensus 25 ~vIiDtD~G~DD~~AL~~al~-~~----~v~v~gIt~v~Gn~-~~~~~~~na~~ll~~~g~ 79 (338)
+|++=.-+|.|-...+.++.. .+ ++++.+++..+|.. ..+...+.+.++.+.+|.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i 61 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGI 61 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 466666778865544444333 11 57999999888864 334556677777777774
No 41
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.90 E-value=68 Score=26.68 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=37.1
Q ss_pred CCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCC
Q 019632 32 PGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 92 (338)
Q Consensus 32 ~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl 92 (338)
.-.++..+.+. ..+.+++++|+..+. .....++....|+..|..+++|..|-.-+.
T Consensus 41 vp~e~i~~~a~---~~~~d~V~lS~~~~~--~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 41 TSQEEFIDAAI---ETDADAILVSSLYGH--GEIDCRGLREKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCcccc--CHHHHHHHHHHHHhcCCCCCeEEEECCCCC
Confidence 33455444332 336789999887773 344456777777777777899988876544
No 42
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=32.48 E-value=1.5e+02 Score=27.06 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=43.8
Q ss_pred CCceEEEecCCCchHHHHHHHHHcC-CCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQT-PELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~~-~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
...+|++=.-.|+|.++.+.++... +..++.+++.-++..+ ......+.++.+.+|.
T Consensus 22 ~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~-~~~~~~a~~~a~~lgi 79 (248)
T cd00553 22 GFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSS-EETREDAKELAEALGI 79 (248)
T ss_pred CCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCC-HHHHHHHHHHHHHhCC
Confidence 3567999999999999877777653 2368999988777544 4456789999999985
No 43
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=32.07 E-value=2.1e+02 Score=26.23 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhc
Q 019632 124 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS 203 (338)
Q Consensus 124 ~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s 203 (338)
.+...+|++.+...+. +||++-+. |+|..|...|.. .+++.||.+. .+.+.+..|.|.+..=+-
T Consensus 100 GTT~~~la~~L~~~~~-ltviTNsl--~ia~~l~~~~~~-----~vi~~GG~~~--------~~~~~~~G~~a~~~l~~~ 163 (253)
T COG1349 100 GTTTLALARALPDDNN-LTVITNSL--NIAAALLEKPNI-----EVILLGGTVR--------KKSGSFVGPLAEEFLRQF 163 (253)
T ss_pred CcHHHHHHHHhCcCCC-eEEEeCCH--HHHHHHHhCCCC-----eEEEeCcEEE--------cCCCeEEcHHHHHHHHhC
Confidence 4456667777765544 88888774 456666666643 5689999986 345567778777777666
Q ss_pred CCcEEEEecccc
Q 019632 204 GANIAVVGINIT 215 (338)
Q Consensus 204 ~~~i~~v~ldvt 215 (338)
.++.-+++.+-.
T Consensus 164 ~~d~aFig~~gi 175 (253)
T COG1349 164 NFDKAFIGADGI 175 (253)
T ss_pred cccEEEEecccc
Confidence 778888877643
No 44
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=31.75 E-value=3.4e+02 Score=25.51 Aligned_cols=133 Identities=18% Similarity=0.250 Sum_probs=74.3
Q ss_pred ccccCCCCCccccC--CCCCceEEEecCCCchHHHHHHHHHc--CCC----CeEEEEEee-------cC----CCChHHH
Q 019632 6 ANENSHGSGVVLGS--STNPAKLIIDTDPGIDDSMTILMAFQ--TPE----LEILGLTTI-------FG----NVTTEDA 66 (338)
Q Consensus 6 ~~~~~~~~~~~~~~--~~~~~~vIiDtD~G~DD~~AL~~al~--~~~----v~v~gIt~v-------~G----n~~~~~~ 66 (338)
+-.|+-|.-+.... ......++++ .-|||-|.+-.++ +|+ ++|..|+-. .| -.+....
T Consensus 86 tItn~~G~pvl~s~~~~~~~~gvf~s---~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vYkl~~e~l~F~fiP~~~q 162 (270)
T TIGR00995 86 TVSNAQNEFVLASDNDGEKSIGLLCF---RQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVYKLKVEGIGFRFLPDPAQ 162 (270)
T ss_pred EEEcCCCCeEEEECCCCCceEEEEEC---CHHHHHHHHHHHHhhCccccCCceEEEEEHHHHHHHhhcCccEEEeCCHHH
Confidence 34555565554421 1222334444 2478999888886 443 566666521 11 2245667
Q ss_pred HHHHHHHH--HHhCCCCCCcccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHc-CCC--cE
Q 019632 67 TRNALTLC--EMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSE-YPG--EV 141 (338)
Q Consensus 67 ~~na~~ll--~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~-~p~--~v 141 (338)
.+||+.++ ..-|...|||+....-.+...+.+.-+.|+ ++.-.+.+++.+++ .|+ .-
T Consensus 163 V~~A~~ll~~~~~~~~GVPlF~~~~Lti~~~n~~~iP~FF------------------~Kedlq~~L~~~kkq~p~l~~~ 224 (270)
T TIGR00995 163 IKNALELPAANSEYFDGVPVFQSGLLVVQKKNERYCPVYF------------------SKEDIEQELSKFKRESPGMADS 224 (270)
T ss_pred HHHHHHHHhcCccCCCCccEEeecceEEEeCCeEEEeeEe------------------eHHHHHHHHHHHhHhCcCcCCC
Confidence 88999998 333344699987733333222222222221 34456666777765 453 23
Q ss_pred EEEEecchhHHHHHHhhC
Q 019632 142 SILALGPLTNLALAIKRD 159 (338)
Q Consensus 142 tila~GPLTNlA~al~~~ 159 (338)
.=|-+++|-||=..++..
T Consensus 225 ~~I~V~~Le~vi~~m~~~ 242 (270)
T TIGR00995 225 QVIMVGSMEDVLSKMETS 242 (270)
T ss_pred ccEEEEeHHHHHHHHhcc
Confidence 457888999998888663
No 45
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=30.63 E-value=2.8e+02 Score=23.65 Aligned_cols=57 Identities=18% Similarity=0.414 Sum_probs=34.0
Q ss_pred EEEecCCCchHHHHHHHHHc----CCCCeEEEEEeecCCC-ChHHHHHHHHHHHHHhCCCCCCccc
Q 019632 26 LIIDTDPGIDDSMTILMAFQ----TPELEILGLTTIFGNV-TTEDATRNALTLCEMAGCPGVPVAE 86 (338)
Q Consensus 26 vIiDtD~G~DD~~AL~~al~----~~~v~v~gIt~v~Gn~-~~~~~~~na~~ll~~~g~~dIPV~~ 86 (338)
|++=.=+|. |.++|+++|. ...+++.+|++.+|-- ......+.+.++++.+| ||.+.
T Consensus 2 i~va~SGG~-DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~---i~~~~ 63 (182)
T PF01171_consen 2 ILVAVSGGK-DSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLG---IPLYI 63 (182)
T ss_dssp EEEE--SSH-HHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT----EEEE
T ss_pred EEEEEcCCH-HHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcC---CceEE
Confidence 444444555 6888888875 2357999999998854 23344455666666655 66553
No 46
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=30.55 E-value=2.1e+02 Score=27.32 Aligned_cols=41 Identities=24% Similarity=0.520 Sum_probs=31.8
Q ss_pred CCceEEEecCCC-------c-hHHHHHHHHHc-CCCCeEEEEEeecCCCC
Q 019632 22 NPAKLIIDTDPG-------I-DDSMTILMAFQ-TPELEILGLTTIFGNVT 62 (338)
Q Consensus 22 ~~~~vIiDtD~G-------~-DD~~AL~~al~-~~~v~v~gIt~v~Gn~~ 62 (338)
.+.+|+|+.|+| . +|+..++-.+. .|.+++.||.+-.|...
T Consensus 120 ~~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~h~g~~~ 169 (353)
T cd06820 120 RPLEVLVEVDSGMNRCGVQTPEDAVALARAIASAPGLRFRGIFTYPGHSY 169 (353)
T ss_pred CeeEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCCcEEEEEEecCCccC
Confidence 456899999986 3 67777766655 68899999999888654
No 47
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=29.91 E-value=1.3e+02 Score=27.91 Aligned_cols=52 Identities=29% Similarity=0.432 Sum_probs=32.1
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 78 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g 78 (338)
-..|||||=+|..|.-+-+++-... -++ |+++.|.+.... ++.+..+++..+
T Consensus 167 ~D~vIID~PP~~g~~d~~i~~~~~~--g~v-iVt~p~~~~~~~-v~ka~~~~~~~~ 218 (265)
T COG0489 167 YDYVIIDTPPGTGDADATVLQRIPD--GVV-IVTTPGKTALED-VKKAIDMLEKAG 218 (265)
T ss_pred CCEEEEeCCCCchHHHHHHHhccCC--eEE-EEeCCccchHHH-HHHHHHHHHhcC
Confidence 4679999999998888777765443 122 334567665543 344555555544
No 48
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=29.52 E-value=2.1e+02 Score=26.20 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=37.8
Q ss_pred CCCceEEEecCCCchHHHHHHHHHc------CCCCeEEEEEeecCCCChHHHHHHHHHHHHHhC
Q 019632 21 TNPAKLIIDTDPGIDDSMTILMAFQ------TPELEILGLTTIFGNVTTEDATRNALTLCEMAG 78 (338)
Q Consensus 21 ~~~~~vIiDtD~G~DD~~AL~~al~------~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g 78 (338)
....+|++=.-+|.| .++|+++|. ...++|.+|+..+|....+. +.+.++++.+|
T Consensus 27 ~~~~kilVa~SGG~D-S~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lg 87 (258)
T PRK10696 27 EEGDRVMVCLSGGKD-SYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLG 87 (258)
T ss_pred CCCCEEEEEecCCHH-HHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhC
Confidence 345689998989995 788887773 22579999998888643221 23456666666
No 49
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=27.94 E-value=3e+02 Score=25.26 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcCCc
Q 019632 127 SEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGAN 206 (338)
Q Consensus 127 ~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~~ 206 (338)
...+++.+... .++||++-.. ++|..|...|++ ++++.||.+.. +......|.|.+.+=+-..+
T Consensus 103 ~~~la~~L~~~-~~ltVvTNsl--~ia~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~a~~~l~~~~~d 166 (252)
T PRK10906 103 PEAVAHALLNH-SNLRIVTNNL--NVANTLMAKEDF-----RIILAGGELRS--------RDGGIIGEATLDFISQFRLD 166 (252)
T ss_pred HHHHHHHhcCC-CCcEEEECcH--HHHHHHhhCCCC-----EEEEECCEEec--------CCCccCCHHHHHHHHhccCC
Confidence 44455655432 2477776553 455666666664 58999999862 33457788888888666677
Q ss_pred EEEEecc
Q 019632 207 IAVVGIN 213 (338)
Q Consensus 207 i~~v~ld 213 (338)
+.+++.+
T Consensus 167 ~afi~~~ 173 (252)
T PRK10906 167 FGILGIS 173 (252)
T ss_pred EEEEcCC
Confidence 7777665
No 50
>PRK13980 NAD synthetase; Provisional
Probab=27.86 E-value=2.5e+02 Score=25.86 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=42.7
Q ss_pred CceEEEecCCCchHHHHHHHHHc-CCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQ-TPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~-~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
..+|++=.-+|+|-++.+.++.. .+..++.+|+.-+|..+ ......+..+++.+|.
T Consensus 30 ~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~-~~~~~~a~~la~~lgi 86 (265)
T PRK13980 30 AKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSP-PEDLEDAELVAEDLGI 86 (265)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCC-HHHHHHHHHHHHHhCC
Confidence 47899999999999887766654 23358999988877543 4457788899999885
No 51
>CHL00181 cbbX CbbX; Provisional
Probab=26.21 E-value=1.2e+02 Score=28.51 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=37.7
Q ss_pred CccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceE
Q 019632 123 DKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNI 169 (338)
Q Consensus 123 ~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~i 169 (338)
...+.+.|.+.+..+.+.+.||+.|.-..+...+..+|.+.+++..+
T Consensus 144 ~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~ 190 (287)
T CHL00181 144 GSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANH 190 (287)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCce
Confidence 35677788888877767789999998778888888899999998643
No 52
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=26.19 E-value=3.5e+02 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCceEEEecCCC-----c---hHHHHHHHHHc-CCCCeEEEEEeecCC
Q 019632 22 NPAKLIIDTDPG-----I---DDSMTILMAFQ-TPELEILGLTTIFGN 60 (338)
Q Consensus 22 ~~~~vIiDtD~G-----~---DD~~AL~~al~-~~~v~v~gIt~v~Gn 60 (338)
.+.+|+|+.|+| + +++.+++-.+. .|.+++.||.+-.|.
T Consensus 124 ~~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~y~G~ 171 (358)
T cd06819 124 VRLDVLVEIDVGQGRCGVPPGEAALALARTIAALPGLRFAGLQAYHGH 171 (358)
T ss_pred CceEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCCceEeEEEeeCch
Confidence 456899999974 4 35777765554 578999999775554
No 53
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=26.12 E-value=2.3e+02 Score=25.94 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=43.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHc-CCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQ-TPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~-~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
..++++|--.+|+|-+++..++.. -+.-+++||+.-.+ .+.+...++|..+.+.+|.
T Consensus 17 g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~-~~~~~~~~~A~~la~~lgi 74 (242)
T PF02540_consen 17 GAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSG-FSSEEDIEDAKELAEKLGI 74 (242)
T ss_dssp TTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESS-TSTHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccc-cCChHHHHHHHHHHHHhCC
Confidence 357899999999999988777654 22347899977644 4456678899999999984
No 54
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=25.69 E-value=3.5e+02 Score=25.62 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=17.8
Q ss_pred hcCCcEEEEecccccccccCHHHHHHHHh
Q 019632 202 TSGANIAVVGINITTQVKLTDADFLELRQ 230 (338)
Q Consensus 202 ~s~~~i~~v~ldvt~~~~~~~~~~~~l~~ 230 (338)
++|..+..+.-+.. ..+++++++++..
T Consensus 188 eaGad~i~i~d~~~--~~lsp~~f~ef~~ 214 (335)
T cd00717 188 EAGAQAVQIFDSWA--GALSPEDFEEFVL 214 (335)
T ss_pred HhCCCEEEEeCccc--ccCCHHHHHHHHH
Confidence 35777766654322 3799999988753
No 55
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=25.15 E-value=2.4e+02 Score=24.04 Aligned_cols=54 Identities=7% Similarity=0.297 Sum_probs=35.0
Q ss_pred eEEEecCCCchHHHHHHHHHc---CCCCeEEEEEeecCCCC-hHHHHHHHHHHHHHhC
Q 019632 25 KLIIDTDPGIDDSMTILMAFQ---TPELEILGLTTIFGNVT-TEDATRNALTLCEMAG 78 (338)
Q Consensus 25 ~vIiDtD~G~DD~~AL~~al~---~~~v~v~gIt~v~Gn~~-~~~~~~na~~ll~~~g 78 (338)
||++=..+|.|-...+.++.. ..++++.+|+..+|-.. .+...+.+.++++.+|
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~g 58 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLN 58 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcC
Confidence 466667788876655554433 22568889988888643 2445667777777766
No 56
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=24.75 E-value=3.3e+02 Score=24.26 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=26.6
Q ss_pred EEEecCCC-----c--hHHHHHHHHHc-CCCCeEEEEEeecCCCC
Q 019632 26 LIIDTDPG-----I--DDSMTILMAFQ-TPELEILGLTTIFGNVT 62 (338)
Q Consensus 26 vIiDtD~G-----~--DD~~AL~~al~-~~~v~v~gIt~v~Gn~~ 62 (338)
|-||||.| + +|+..++-.+. .|.+++.||-|=.++..
T Consensus 123 l~id~~~Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH~a~~~ 167 (224)
T cd06824 123 IQVNISGEDSKSGVAPEDAAELAEAISQLPNLRLRGLMAIPAPTD 167 (224)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC
Confidence 37777763 4 57777766554 68899999988877644
No 57
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=24.65 E-value=3e+02 Score=26.97 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.0
Q ss_pred CCceEEEecCCC-----c--h-HHHHHHHHHc-CCCCeEEEEEeecCC
Q 019632 22 NPAKLIIDTDPG-----I--D-DSMTILMAFQ-TPELEILGLTTIFGN 60 (338)
Q Consensus 22 ~~~~vIiDtD~G-----~--D-D~~AL~~al~-~~~v~v~gIt~v~Gn 60 (338)
.+-+|+|+.|+| + + |+.+++-.+. .+.+++.||-+-.|.
T Consensus 132 ~~l~V~lkVDtGm~R~Gv~~~~~~~~l~~~i~~~~~l~~~Gi~ty~gh 179 (379)
T cd06814 132 LTLRINLELDVGLHRGGFADPQTLPKALTAIDAPPRLRFSGLMGYEPH 179 (379)
T ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhCCCceEEEEEEEccc
Confidence 456899999986 2 3 5778777665 578999999988775
No 58
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=24.56 E-value=2.8e+02 Score=29.20 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.2
Q ss_pred CccccccccCCHHHHHHHHhc-CCcEEEE
Q 019632 183 NPAAEANIYGDPEAADVVFTS-GANIAVV 210 (338)
Q Consensus 183 ~~~aEfN~~~DPeAA~~Vl~s-~~~i~~v 210 (338)
-|.|.|--|.|||.|+..+++ +++-.+|
T Consensus 121 IPTA~y~~ft~~e~a~sfi~~~~~~~~Vi 149 (788)
T KOG0237|consen 121 IPTAKYKTFTDPEEAKSFIQSATDKALVI 149 (788)
T ss_pred CCcceeeeeCCHHHHHHHHHhCCCcceEE
Confidence 388999999999999999997 4343333
No 59
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=24.04 E-value=3.3e+02 Score=24.69 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCceEEEecCCC---------chHHHHHHHHHc--CCCCeEEEEEeecCCCC
Q 019632 22 NPAKLIIDTDPG---------IDDSMTILMAFQ--TPELEILGLTTIFGNVT 62 (338)
Q Consensus 22 ~~~~vIiDtD~G---------~DD~~AL~~al~--~~~v~v~gIt~v~Gn~~ 62 (338)
.+.+|+|+.|.| .+++..|+-.+. .|.+++.|+-|..|...
T Consensus 116 ~~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~~~ 167 (227)
T cd06822 116 EPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGY 167 (227)
T ss_pred CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCCCC
Confidence 356788888864 378888888774 68999999999988643
No 60
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=24.00 E-value=2e+02 Score=28.72 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHcCCCcEEEE---EecchhHHHHHHhhCcchhhccceEEEecCCCCCCCC
Q 019632 124 KNASEFLVDKVSEYPGEVSIL---ALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 181 (338)
Q Consensus 124 ~~a~~~i~~~~~~~p~~vtil---a~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 181 (338)
.+-++.|.+.++....++.++ --|.++=.|.|+..+..-..+++.++.|||-++..-|
T Consensus 153 dDYi~~l~~~i~~~G~~v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~ 213 (406)
T TIGR01849 153 EDYIDYLIEFIRFLGPDIHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARAS 213 (406)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCC
Confidence 445678888886653334444 3467777778887776656679999999999876433
No 61
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=23.91 E-value=3.4e+02 Score=24.89 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcCCcEE
Q 019632 129 FLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIA 208 (338)
Q Consensus 129 ~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~~i~ 208 (338)
.|++.+...+ ++||++... ++|.+|...+. .+ ++++.||.+.. +.+....|.|.+.+=+-..+..
T Consensus 105 ~la~~L~~~~-~ltVvTnsl--~ia~~l~~~~~---~~-~v~l~GG~~~~--------~~~~~~G~~a~~~l~~~~~D~a 169 (256)
T PRK10434 105 QMVPLLSRFN-NITVMTNSL--HIVNALSELDN---EQ-TILMPGGTFRK--------KSASFHGQLAENAFEHFTFDKL 169 (256)
T ss_pred HHHHHhccCC-CeEEEECCH--HHHHHHhhCCC---CC-EEEEECCEEeC--------CCCeEECHHHHHHHHhCcCCEE
Confidence 4455554332 366666543 23344433222 12 68999999862 3455788888887766567777
Q ss_pred EEeccc
Q 019632 209 VVGINI 214 (338)
Q Consensus 209 ~v~ldv 214 (338)
+++.+-
T Consensus 170 fi~~~g 175 (256)
T PRK10434 170 FIGTDG 175 (256)
T ss_pred EEcCce
Confidence 777653
No 62
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.61 E-value=3.5e+02 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=20.1
Q ss_pred HHHHHHHHHc-CCCcEEEEEecch--hHHHHHHh
Q 019632 127 SEFLVDKVSE-YPGEVSILALGPL--TNLALAIK 157 (338)
Q Consensus 127 ~~~i~~~~~~-~p~~vtila~GPL--TNlA~al~ 157 (338)
..+| +.++. .| .+-++++|-. .|++..|.
T Consensus 132 ~~yi-kal~~plp-~~~l~ptGGV~~~n~~~~l~ 163 (201)
T PRK06015 132 AAFL-KALSSPLA-GTFFCPTGGISLKNARDYLS 163 (201)
T ss_pred HHHH-HHHHhhCC-CCcEEecCCCCHHHHHHHHh
Confidence 4444 55554 45 5999999977 88888773
No 63
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=23.45 E-value=89 Score=29.54 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=36.3
Q ss_pred CCceEEEecCCCchHHH-HHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcc
Q 019632 22 NPAKLIIDTDPGIDDSM-TILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 85 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~-AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~ 85 (338)
..-.+||||-||++|.. .+.--+... +- ||.++. +.+-+..-+++-.++|.+..|||.
T Consensus 156 ~lDyLviDtPPGtsDehls~~~~~~~~--~g-AviVTT---PQ~vAl~Dv~K~i~fc~K~~I~il 214 (300)
T KOG3022|consen 156 ELDYLVIDTPPGTSDEHLSLVQFLRES--DG-AVIVTT---PQEVALQDVRKEIDFCRKAGIPIL 214 (300)
T ss_pred CcCEEEEeCCCCCChhhhheeeccccc--Cc-eEEEeC---chhhhhHHHHhhhhhhhhcCCceE
Confidence 35579999999987764 443333211 11 233221 234456678888889988889975
No 64
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=23.41 E-value=2.8e+02 Score=25.19 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=40.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
...+|++=.-+|+|-++.+.++......++.++..-+|....+.....+.++++.+|-
T Consensus 21 ~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi 78 (250)
T TIGR00552 21 GAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGI 78 (250)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCC
Confidence 3567888899999888766655443234677776666644445567788888888884
No 65
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=23.39 E-value=3.5e+02 Score=26.39 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=40.9
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCC-hHHHHHHHHHHHHHhCC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT-TEDATRNALTLCEMAGC 79 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~-~~~~~~na~~ll~~~g~ 79 (338)
..+|++=.-.|+|-++++.++... ..++.||+...++.. .....+.++++.+.+|.
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~~-G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgI 61 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLEA-GYEVTGVTFRFYEFNGSTEYLEDARALAERLGI 61 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHc-CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCC
Confidence 468999999999877777666553 589999988765432 23446678888888873
No 66
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=23.39 E-value=3.2e+02 Score=25.83 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=20.1
Q ss_pred HhcCCcEEEEecccccccccCHHHHHHHH
Q 019632 201 FTSGANIAVVGINITTQVKLTDADFLELR 229 (338)
Q Consensus 201 l~s~~~i~~v~ldvt~~~~~~~~~~~~l~ 229 (338)
+++|.....+.-+......+++++++++.
T Consensus 181 ~eaGad~i~i~d~~a~~~~isp~~f~e~~ 209 (326)
T cd03307 181 LEAGADIITIADPTASPELISPEFYEEFA 209 (326)
T ss_pred HHcCCCEEEecCCCccccccCHHHHHHHH
Confidence 34577777665555556678999998764
No 67
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=23.20 E-value=3.2e+02 Score=22.85 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=33.0
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhC
Q 019632 26 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 78 (338)
Q Consensus 26 vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g 78 (338)
|++=.=.|.|-.+++.++.. ...++.+++..+|..+.. ..+.+.++.+.+|
T Consensus 2 vlv~~SGG~DS~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~g 52 (169)
T cd01995 2 AVVLLSGGLDSTTCLAWAKK-EGYEVHALSFDYGQRHAK-EEEAAKLIAEKLG 52 (169)
T ss_pred EEEEecCcHHHHHHHHHHHH-cCCcEEEEEEECCCCChh-HHHHHHHHHHHHC
Confidence 44445578876665555544 457899999888754322 3367777778887
No 68
>COG3933 Transcriptional antiterminator [Transcription]
Probab=23.14 E-value=8e+02 Score=24.89 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHc-----CCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccccccCC
Q 019632 32 PGIDDSMTILMAFQ-----TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGS 106 (338)
Q Consensus 32 ~G~DD~~AL~~al~-----~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~hg~ 106 (338)
+--||++=|.+.+. ++.=++..|...+|+.+...-+.-|.++|.. -.+.|-+-||...
T Consensus 85 ip~~Ev~~Lal~l~~~~~~~~~~~v~vIiiAHG~sTASSmaevanrLL~~------~~~~aiDMPLdvs----------- 147 (470)
T COG3933 85 IPADEVLYLALFLHECRHYTQNPRVKVIIIAHGYSTASSMAEVANRLLGE------EIFIAIDMPLDVS----------- 147 (470)
T ss_pred CChHHHHHHHHHHHHhhhcccCCceeEEEEecCcchHHHHHHHHHHHhhc------cceeeecCCCcCC-----------
Confidence 33567766666554 3345666778889998887777777777642 1233344444321
Q ss_pred CCCCCCCCCCCCCCCCCccHHHHHHHHHHcCC---CcEEEEEecchhHHHHHHhhCcc
Q 019632 107 DGMGNISLTPPKAKKCDKNASEFLVDKVSEYP---GEVSILALGPLTNLALAIKRDSS 161 (338)
Q Consensus 107 dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p---~~vtila~GPLTNlA~al~~~P~ 161 (338)
.+.-.+.+.+.+++.+ |=+-++=.|.||-++..+.+.=.
T Consensus 148 ----------------p~~vle~l~e~~k~~~~~~GlllLVDMGSL~~f~~~i~~~~~ 189 (470)
T COG3933 148 ----------------PSDVLEKLKEYLKERDYRSGLLLLVDMGSLTSFGSIISEEFG 189 (470)
T ss_pred ----------------HHHHHHHHHHHHHhcCccCceEEEEecchHHHHHHHHHHHhC
Confidence 2334566777777653 34788999999999998876543
No 69
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=23.12 E-value=3.4e+02 Score=24.04 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=27.4
Q ss_pred CceEEEecCCC---------chHHHHHHHHH-cCCCCeEEEEEeecCCCC
Q 019632 23 PAKLIIDTDPG---------IDDSMTILMAF-QTPELEILGLTTIFGNVT 62 (338)
Q Consensus 23 ~~~vIiDtD~G---------~DD~~AL~~al-~~~~v~v~gIt~v~Gn~~ 62 (338)
+.+|+|..|+| .||+..++-.+ ..+.+++.||.+-.++..
T Consensus 116 ~~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~~~~l~~~Gi~sh~s~~~ 165 (222)
T cd00635 116 VLDVLVQVNIGGEESKSGVAPEELEELLEEIAALPNLRIRGLMTIAPLTE 165 (222)
T ss_pred CCcEEEEEecCCCCCCCCCCHHHHHHHHHHHHcCCCCcEEEEEEECCCCC
Confidence 45677777766 26776665444 467899999988655554
No 70
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=22.45 E-value=4.8e+02 Score=23.76 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=44.6
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCP 80 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~ 80 (338)
+++.|+=.=.|.|-...+.+|++.- -+|.+||.-+|.-. ..-.+-|+++.+.+|.+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~~-~ev~alsfdYGQrh-~~Ele~A~~iak~lgv~ 57 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKEG-YEVHALTFDYGQRH-RKELEAAKELAKKLGVP 57 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHhcC-CEEEEEEeeCCCCc-HHHHHHHHHHHHHcCCC
Confidence 4566666778999888888888763 78999999999876 55567788999999853
No 71
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=22.14 E-value=3.1e+02 Score=25.04 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=40.8
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
..+|++=.-+|+|-.+.+.++... ..++.+|+..++..+ ....+.+.++.+.+|.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~-g~~v~av~~~~~~~~-~~e~~~a~~~a~~lgi 66 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA-GTEVLAITVVSPSIS-PRELEDAIIIAKEIGV 66 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh-CCCEEEEEecCCCCC-HHHHHHHHHHHHHcCC
Confidence 466888888999877777666555 578999998877544 3356778888888874
No 72
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=21.93 E-value=4.7e+02 Score=21.76 Aligned_cols=78 Identities=29% Similarity=0.464 Sum_probs=48.0
Q ss_pred HHHHHHHc-CCCcEEEEEecchhHHHHH--HhhC-cc--------h---hhccceEE-----EecCCCCCCCCCCccccc
Q 019632 129 FLVDKVSE-YPGEVSILALGPLTNLALA--IKRD-SS--------F---ASKVKNIV-----VLGGAFFALGNVNPAAEA 188 (338)
Q Consensus 129 ~i~~~~~~-~p~~vtila~GPLTNlA~a--l~~~-P~--------~---~~~i~~iv-----iMGG~~~~~GN~~~~aEf 188 (338)
.|++.+|+ .|+++.|+++| ||=... -.+. -+ + .++++-|+ +|..++ -|.+|
T Consensus 15 ~iv~~lr~~~~~~~eI~AlG--TNa~AT~~MlKaGA~~gATGENaIv~n~~~aDiIvGpigIv~a~sm--lGEiT----- 85 (131)
T PF12953_consen 15 QIVEKLRKELPEEVEIIALG--TNAIATSAMLKAGANEGATGENAIVVNARKADIIVGPIGIVIANSM--LGEIT----- 85 (131)
T ss_pred HHHHHHHHhCCCCcEEEEEe--hhHHHHHHHHHcCCCCcccccchheeccCCCCEEECcHHHhccCcc--ccccc-----
Confidence 36677765 58889999999 564322 2221 11 2 23332111 122222 25455
Q ss_pred cccCCHHHHHHHHhcCCcEEEEeccccccccc
Q 019632 189 NIYGDPEAADVVFTSGANIAVVGINITTQVKL 220 (338)
Q Consensus 189 N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~ 220 (338)
|.=|+.|.+|...-.++|++-|+-...
T Consensus 86 -----p~mA~AI~~S~A~KiLiPl~~~~~~iv 112 (131)
T PF12953_consen 86 -----PAMAEAIAQSPAKKILIPLNRCNIEIV 112 (131)
T ss_pred -----HHHHHHHhcCCCCEEEEeecCCCCEEE
Confidence 888999999999999999998876554
No 73
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=21.44 E-value=4.3e+02 Score=25.09 Aligned_cols=40 Identities=18% Similarity=0.487 Sum_probs=28.4
Q ss_pred CCceEEEecCCC-----c--hHHHHHHHHH---cCCCCeEEEEEeecCCC
Q 019632 22 NPAKLIIDTDPG-----I--DDSMTILMAF---QTPELEILGLTTIFGNV 61 (338)
Q Consensus 22 ~~~~vIiDtD~G-----~--DD~~AL~~al---~~~~v~v~gIt~v~Gn~ 61 (338)
.+.+|+|+.|+| + ++..++..+. ..+.+++.||.+=.|..
T Consensus 110 ~~~~V~l~ID~G~~R~Gv~~~~~~~l~~~~~i~~~~~l~l~Gl~~h~g~~ 159 (345)
T cd07376 110 VRLRVMLEVDVGGHRSGVRPEEAAALALADAVQASPGLRLAGVMAYEGHI 159 (345)
T ss_pred CeeEEEEEeCCCCCcCCCCCcHHHHHHHHHHhccCCCeEEeEEEeecchh
Confidence 356899999976 4 3555555443 46789999999887754
No 74
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=21.38 E-value=4.5e+02 Score=25.63 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=42.0
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
..++++=.=+|+|-.+|+.++... ..++.+++..+|....+...+.+.++.+.++.
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~kr-G~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~ 227 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMKR-GCRVVAVHFFNEPAASEKAREKVERLANSLNE 227 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHHc-CCeEEEEEEeCCCCccHHHHHHHHHHHHHHhh
Confidence 345666666789888888777665 68999999988865556677888888887754
No 75
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.07 E-value=6.8e+02 Score=23.52 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHc-CC-CcEEEEEe-----cchhHHHHHHhhCcchh--hccceEEEe--cCCCCCCCCCCccccccccC
Q 019632 124 KNASEFLVDKVSE-YP-GEVSILAL-----GPLTNLALAIKRDSSFA--SKVKNIVVL--GGAFFALGNVNPAAEANIYG 192 (338)
Q Consensus 124 ~~a~~~i~~~~~~-~p-~~vtila~-----GPLTNlA~al~~~P~~~--~~i~~iviM--GG~~~~~GN~~~~aEfN~~~ 192 (338)
..|..-++..+++ +| -++.+.-+ +.-..|+.||+.--+.. ..+.-|+|. ||++ .+...|.
T Consensus 25 gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~---------eDL~~FN 95 (319)
T PF02601_consen 25 GAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI---------EDLWAFN 95 (319)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh---------HHhcccC
Confidence 4455556666654 45 34555433 67788888888765443 356656665 3333 5788899
Q ss_pred CHHHHHHHHhcCCcEE
Q 019632 193 DPEAADVVFTSGANIA 208 (338)
Q Consensus 193 DPeAA~~Vl~s~~~i~ 208 (338)
|.+=|+.|+++.+|++
T Consensus 96 ~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 96 DEEVARAIAASPIPVI 111 (319)
T ss_pred hHHHHHHHHhCCCCEE
Confidence 9999999999999853
No 76
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=20.83 E-value=1.7e+02 Score=26.80 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccce
Q 019632 124 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKN 168 (338)
Q Consensus 124 ~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~ 168 (338)
.++.+.+.+.+..+.+++.++.+|.-+.+-.++..+|.+.+++..
T Consensus 127 ~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~ 171 (261)
T TIGR02881 127 KEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPI 171 (261)
T ss_pred HHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccce
Confidence 457788888887777788888889888887888889999999843
No 77
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=20.70 E-value=2.9e+02 Score=24.63 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=38.4
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 26 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 26 vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
+++=.=.|+|-...+.++... ..+|.+|+..+|-- .+.-.++++++.+.+|.
T Consensus 2 avvl~SGG~DSt~~l~~~~~~-~~~v~al~~~YGq~-~~~El~~a~~i~~~l~v 53 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKE-GYEVYALTFDYGQR-HRRELEAAKKIAKKLGV 53 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH--SEEEEEEEESSST-TCHHHHHHHHHHHHCT-
T ss_pred EEEEeCCCHHHHHHHHHHHHc-CCeEEEEEEECCCC-CHHHHHHHHHHHHHhCC
Confidence 344445788877777777665 47899999999987 66667899999999995
No 78
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.62 E-value=1.6e+02 Score=26.09 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=31.4
Q ss_pred cCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcc
Q 019632 30 TDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 85 (338)
Q Consensus 30 tD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~ 85 (338)
.|.|.|+.++-.+.....+=|++=+.+..|+. +|+.+.++.+....+||.
T Consensus 91 nd~~~~~~f~~ql~~~~~~gDvli~iS~SG~s------~~v~~a~~~Ak~~G~~vI 140 (196)
T PRK10886 91 NDRLHDEVYAKQVRALGHAGDVLLAISTRGNS------RDIVKAVEAAVTRDMTIV 140 (196)
T ss_pred ccccHHHHHHHHHHHcCCCCCEEEEEeCCCCC------HHHHHHHHHHHHCCCEEE
Confidence 45678899988887765444555455667872 355555555555556654
No 79
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=20.37 E-value=3e+02 Score=27.51 Aligned_cols=56 Identities=13% Similarity=0.309 Sum_probs=39.3
Q ss_pred CCceEEEecCCCchHHHHHHHHHc-----CCCCeEEEEEeecCCCC-hHHHHHHHHHHHHHhC
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQ-----TPELEILGLTTIFGNVT-TEDATRNALTLCEMAG 78 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~-----~~~v~v~gIt~v~Gn~~-~~~~~~na~~ll~~~g 78 (338)
...+|++=.=+|. |.++|+++|. .+++++.++++-+|--. .+.-.+-+..+++.+|
T Consensus 14 ~~~~ilvavSGG~-DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~ 75 (436)
T PRK10660 14 TSRQILVAFSGGL-DSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQ 75 (436)
T ss_pred CCCeEEEEecCCH-HHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcC
Confidence 3477999998999 5788888874 35789999999999643 2222345556666665
No 80
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=20.13 E-value=2.3e+02 Score=23.25 Aligned_cols=51 Identities=27% Similarity=0.302 Sum_probs=32.7
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhC
Q 019632 26 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 78 (338)
Q Consensus 26 vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g 78 (338)
+++=-=.|.|-..++.++......++++++..+|-.. +...+++.++.+. |
T Consensus 4 ~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~-~~~~~~~~~~a~~-g 54 (154)
T cd01996 4 CIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNS-EEAVKNIKNLIKK-G 54 (154)
T ss_pred EEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCC-HHHHHHHHHHHHh-C
Confidence 3444446887776666655432347888888777643 3456788888877 5
Done!