Query 019632
Match_columns 338
No_of_seqs 176 out of 1183
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:45:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t8j_A Purine nucleosidase, (I 100.0 9E-83 3.1E-87 603.1 32.1 308 23-337 1-310 (311)
2 1q8f_A Pyrimidine nucleoside h 100.0 1.1E-82 3.7E-87 604.0 31.7 306 22-337 2-308 (313)
3 1yoe_A Hypothetical protein YB 100.0 3.4E-82 1.2E-86 602.6 32.2 308 21-337 11-320 (322)
4 2mas_A Inosine-uridine nucleos 100.0 5.2E-82 1.8E-86 599.7 31.7 305 24-337 2-309 (314)
5 3t8i_A Purine nucleosidase, (I 100.0 3.3E-81 1.1E-85 590.2 29.3 304 23-337 1-306 (306)
6 3fz0_A Nucleoside hydrolase, p 100.0 4.4E-80 1.5E-84 593.1 26.1 314 20-337 3-358 (360)
7 2c40_A Inosine-uridine preferr 100.0 1.3E-76 4.3E-81 562.7 22.1 301 23-338 1-310 (312)
8 3epw_A IAG-nucleoside hydrolas 100.0 1.8E-75 6.3E-80 559.2 15.7 303 21-337 11-337 (338)
9 2yhg_A SDE_182CT, cellulose-bi 99.3 1.7E-11 5.9E-16 119.0 12.9 133 21-176 26-189 (437)
10 2der_A TRNA-specific 2-thiouri 49.7 65 0.0022 30.2 8.9 60 22-85 16-82 (380)
11 3k32_A Uncharacterized protein 46.0 33 0.0011 28.9 5.8 52 23-78 6-57 (203)
12 2hma_A Probable tRNA (5-methyl 41.2 69 0.0024 29.9 7.7 59 23-85 9-74 (376)
13 1ni5_A Putative cell cycle pro 39.1 79 0.0027 30.1 7.8 59 23-85 13-77 (433)
14 3bl5_A Queuosine biosynthesis 38.9 70 0.0024 26.6 6.8 55 23-79 3-57 (219)
15 2yxb_A Coenzyme B12-dependent 30.7 67 0.0023 26.1 5.0 41 47-89 68-108 (161)
16 4f4h_A Glutamine dependent NAD 29.0 77 0.0026 31.4 6.0 64 21-85 298-364 (565)
17 3a2k_A TRNA(Ile)-lysidine synt 26.4 85 0.0029 30.1 5.7 60 22-85 17-82 (464)
18 3sy1_A UPF0001 protein YGGS; e 26.4 2.2E+02 0.0076 24.7 8.0 41 22-62 122-172 (245)
19 1vl2_A Argininosuccinate synth 26.3 1.8E+02 0.0061 27.8 7.8 55 21-79 12-66 (421)
20 1ccw_A Protein (glutamate muta 26.1 43 0.0015 26.4 2.9 57 28-89 37-93 (137)
21 2lqo_A Putative glutaredoxin R 24.2 1.2E+02 0.004 22.1 4.9 42 184-226 30-76 (92)
22 2obn_A Hypothetical protein; s 23.4 2.2E+02 0.0075 26.3 7.7 58 22-79 253-329 (349)
23 1xng_A NH(3)-dependent NAD(+) 22.1 1.3E+02 0.0043 26.4 5.6 56 23-79 25-80 (268)
24 3cpg_A Uncharacterized protein 21.6 2.4E+02 0.0082 24.7 7.4 41 22-62 159-209 (282)
25 2pg3_A Queuosine biosynthesis 21.3 2.8E+02 0.0096 23.2 7.6 54 24-79 3-56 (232)
26 2c1l_A Restriction endonucleas 20.6 56 0.0019 29.3 2.7 65 135-210 29-98 (358)
No 1
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=9e-83 Score=603.06 Aligned_cols=308 Identities=29% Similarity=0.494 Sum_probs=286.7
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 102 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 102 (338)
++|||||||+|+||++||+|| .+|+++|+|||+|+||++++++++|++++|+++|+ +||||+|+.+||.++. ..+++
T Consensus 1 M~kvIiDtD~G~DDa~Al~~a-~~p~iel~gIttv~GN~~~~~~~~Na~~ll~~~g~-diPV~~Ga~~Pl~~~~-~~a~~ 77 (311)
T 3t8j_A 1 MRHFIIDCDTAEDDVLSLYLL-LKNNIDVVAVTIVEGNISYEQEVKNALWALEQVNR-EIPVYPGANKPLLKNY-ITVEK 77 (311)
T ss_dssp CCEEEEEECCSHHHHHHHHHH-HHTTCEEEEEEECSSSSCHHHHHHHHHHHHHHTTC-CCCEEECCSSCSSSCC-CCCHH
T ss_pred CceEEEECCCChHHHHHHHHH-cCCCCEEEEEEEccCCCCHHHHHHHHHHHHHHcCC-CCCEEECCCCCCCCCC-ccchh
Confidence 479999999999999999999 77999999999999999999999999999999999 9999999999998864 56788
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCC
Q 019632 103 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 182 (338)
Q Consensus 103 ~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 182 (338)
+||++|||+..+|.+...+...+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++..+||+
T Consensus 78 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iviMGG~~~~~GN~ 157 (311)
T 3t8j_A 78 VHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGELEFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNI 157 (311)
T ss_dssp HHCTTSSSSCCCCCSSCCCCSSCHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCTTHHHHEEEEEEECCCTTSCCSS
T ss_pred hcCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHChHHHhhcCEEEEcCCcccCCCCC
Confidence 99999999999998877778899999999999999999999999999999999999999999999999999999889999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCcccccc
Q 019632 183 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH 262 (338)
Q Consensus 183 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 262 (338)
+|.||||||+|||||++||+|++|++|+|||+|++..+++++++++++.+++.++|+.+++++|..++.+.++..++++|
T Consensus 158 tp~aEfN~~~DPeAA~~V~~sg~~i~~v~ldvt~~~~lt~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~lh 237 (311)
T 3t8j_A 158 TPVAEFNIWVDPDAAKIVFNAGFDITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKINGHPHP 237 (311)
T ss_dssp SSSCCHHHHHCHHHHHHHHHTTCCEEEECHHHHTTSCBCHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHTSCCSSBCCH
T ss_pred CchhhhccccCHHHHHHHHhCCCCEEEecccccccccCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcCCCCCcCc
Confidence 99999999999999999999999999999999988889999999999988999999999999999887777777899999
Q ss_pred ccchhhhhccCCeee-eEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 263 DPVSFVALVRPDLFT-FKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 263 D~la~a~~~~P~l~~-~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
|++|++++++|++|+ +++.+|+||++| .+||+|++|+.+.. ..++..+|++|+.++|.++|+++|.++|.+
T Consensus 238 D~lava~~l~P~l~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~~----~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 310 (311)
T 3t8j_A 238 DAITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVDRFDAD----TSWSDKPNAEIVYEINKKSFMEKIYDLLNW 310 (311)
T ss_dssp HHHHHHHHHCGGGEEEEEEEEEEECCSSSTTTTCEEEECSCSS----SCSCSSCCEEEEEEECHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhCHHHhhccceeeEEEecCCCCCCceEEEecCCCc----ccCCCCCCEEEeeccCHHHHHHHHHHHHhh
Confidence 999999999999996 689999999997 79999999975320 113456899999999999999999999875
No 2
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A*
Probab=100.00 E-value=1.1e-82 Score=603.98 Aligned_cols=306 Identities=29% Similarity=0.519 Sum_probs=285.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccc
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 101 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~ 101 (338)
+++|||||||+|+||++||+|||++|+++|+|||+|+||++++++++|++++|++ |+++||||+|+.+||.++. ..++
T Consensus 2 ~~~~vIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~-g~~dIPV~~Ga~~pl~~~~-~~a~ 79 (313)
T 1q8f_A 2 EKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQK-LEINVPVYAGMPQPIMRQQ-IVAD 79 (313)
T ss_dssp -CEEEEEEECCCHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHH-TTCCCCEEECCSSCSSSCC-CCCH
T ss_pred CCceEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCCCHHHHHHHHHHHHHc-CCCCCCEEeCCCccccCCC-CCcc
Confidence 3679999999999999999999999999999999999999999999999999999 9999999999999998753 4567
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCC
Q 019632 102 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 181 (338)
Q Consensus 102 ~~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 181 (338)
++||++|||+..+|+|...+.+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++.. ||
T Consensus 80 ~~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~~-GN 158 (313)
T 1q8f_A 80 NIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGT-GN 158 (313)
T ss_dssp HHHCTTSSCSCCCCCCCCCCCSSCHHHHHHHHHHHSCSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSSC-CS
T ss_pred ccCCCcCCCCCCCCCCccCCCCCcHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHCHHHHHhCCEEEEECCCCCC-CC
Confidence 89999999999999887777789999999999999999999999999999999999999999999999999999975 99
Q ss_pred CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCccccc
Q 019632 182 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 261 (338)
Q Consensus 182 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 261 (338)
++|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..++++
T Consensus 159 ~tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l 238 (313)
T 1q8f_A 159 FTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPV 238 (313)
T ss_dssp SSSSCCHHHHTCHHHHHHHHTSCSCEEEECHHHHGGGEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCSSEEC
T ss_pred CCchhHHhhccCHHHHHHHHhCCCCEEEeChhhhhcccCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCcCCCcc
Confidence 99999999999999999999999999999999999999999999999988889999999999999988876556678999
Q ss_pred cccchhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 262 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 262 ~D~la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
||++|++++++|++|++++.+|+|+++| .+||+|++|+... ++..+|++|+.++|.++|+++|.++|.+
T Consensus 239 hD~lava~~~~p~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (313)
T 1q8f_A 239 HDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGV-------LGKPANTKVGITIDTDWFWGLVEECVRG 308 (313)
T ss_dssp TTHHHHHHHHCGGGEEEEEECEEECCCSSTTTTCEEECTTCT-------TCCCCCEEEEEEECHHHHHHHHHHHHHT
T ss_pred chHHHHHHHcCcceeEEEEEEEEEEeCCCCCCCeEEEecccc-------CCCCCCEEEEEecCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 7999999997532 2346799999999999999999999874
No 3
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=100.00 E-value=3.4e-82 Score=602.59 Aligned_cols=308 Identities=31% Similarity=0.510 Sum_probs=280.1
Q ss_pred CCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcc
Q 019632 21 TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVA 100 (338)
Q Consensus 21 ~~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~ 100 (338)
.+.+|||||||+|+||++||+|||++|+++|+|||+|+||++++++++|++++|+++|+.+||||+|+.+||.++. ..+
T Consensus 11 ~~~~~viiD~D~GiDDa~AL~~al~~p~i~l~gIttv~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~Pl~~~~-~~a 89 (322)
T 1yoe_A 11 GSALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVAGGAVKPLMREL-IIA 89 (322)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCSSSCC-CCC
T ss_pred CCCceEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHcCCCCCCEEeCCCccccCCC-ccc
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999998753 567
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCC
Q 019632 101 EFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALG 180 (338)
Q Consensus 101 ~~~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~G 180 (338)
+++||++|||+..+|+|...+.+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++. .|
T Consensus 90 ~~~HG~~Glg~~~~p~~~~~~~~~~Av~~i~~~l~~~p~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGGa~~-~G 168 (322)
T 1yoe_A 90 DNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMG-LG 168 (322)
T ss_dssp -----CCSSCSSCCCCCSSCCCSSCHHHHHHHHHHHCSSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSS-CC
T ss_pred cccCCCCCCCCcCCCCCcCCCCcchHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHChHHHhhCCEEEEeCCCCC-CC
Confidence 78999999999999988888888999999999999999999999999999999999999999999999999999986 69
Q ss_pred CCCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhh-hcCCCccc
Q 019632 181 NVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHV-KSDGVHGI 259 (338)
Q Consensus 181 N~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~ 259 (338)
|++|.||||||+|||||++||+|++|++|+|||+|+++.++++++++|.+.+++.++|+.+++++|.+++. +.++..++
T Consensus 169 N~tp~AEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 248 (322)
T 1yoe_A 169 NWTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGA 248 (322)
T ss_dssp SSSSSCCHHHHHCHHHHHHHHTSSSCEEEECHHHHTTSEECHHHHHHHHHHCSHHHHHHHHHHHHHHC-----CCCCSSE
T ss_pred CCCcccHhhcccCHHHHHHHHhCCCCEEEECccccccccCCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 99999999999999999999999999999999999999999999999998889999999999999988543 34556788
Q ss_pred cccccchhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 260 FLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 260 ~l~D~la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
++||++|++++++|++|++++.+|+||++| .+||+|++|+... ++..+|++|+.++|.++|+++|.++|.+
T Consensus 249 ~lhD~lava~~~~P~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 320 (322)
T 1yoe_A 249 PLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYL-------TGNKPNATVMVDVDRQGFVDLLADRLKF 320 (322)
T ss_dssp ECCTHHHHHHHHCGGGEEEEEECEEECCSCSSCTTCEEECTTCC-------SSCCCCEEEEEEECHHHHHHHHHHHHGG
T ss_pred ccccHHHhhheecccceEEEEEEEEEEeCCCCCCceEEEecccc-------CCCCCCeEEEeecCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999996 7999999997532 1346799999999999999999999864
No 4
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=100.00 E-value=5.2e-82 Score=599.74 Aligned_cols=305 Identities=29% Similarity=0.501 Sum_probs=284.9
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccccc
Q 019632 24 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA 103 (338)
Q Consensus 24 ~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~ 103 (338)
+|||||||+|+||++||+|||++|+++|+|||+|+||++++++++|++++|+++|+++||||+|+.+||.++. ..++++
T Consensus 2 ~~vIiDtD~GiDDa~AL~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~-~~a~~~ 80 (314)
T 2mas_A 2 KKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKI-MTAGHI 80 (314)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCCSCCEEECCSSCSSSCC-CCCHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEeCCCcccCCCC-CCcccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998753 456789
Q ss_pred cCCCCCCCCCCCCCCCC-CCCccHHHHHHHHHHc-CCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCC
Q 019632 104 HGSDGMGNISLTPPKAK-KCDKNASEFLVDKVSE-YPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 181 (338)
Q Consensus 104 hg~dGlg~~~~p~~~~~-~~~~~a~~~i~~~~~~-~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 181 (338)
||++|||+..+|.+... +.+.+|+++|++++++ +|++||||++|||||||+||+++|++.++||+||||||++ ..||
T Consensus 81 hG~~Glg~~~~p~~~~~~~~~~~A~~~i~~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGG~~-~~GN 159 (314)
T 2mas_A 81 HGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGY-HEGN 159 (314)
T ss_dssp HCSSSSTTCCCCSSCSSCBCSSCHHHHHHHHHHHSCTTCEEEEECSCSHHHHHHHHHCTHHHHHSCEEEEECCCS-SCCS
T ss_pred CCCCCCCCCCCCCccccccCCccHHHHHHHHHHhhCCCCEEEEEeccHHHHHHHHHHChhHHhhCCEEEEeCCcc-cCCC
Confidence 99999999999888776 6788999999999999 9999999999999999999999999999999999999999 5799
Q ss_pred CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCccccc
Q 019632 182 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 261 (338)
Q Consensus 182 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 261 (338)
++|.||||||+|||||++||+|++|++|+|||+|+++.++++++++|.+.+++.++|+.+++++|.+++++.++..++++
T Consensus 160 ~tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l 239 (314)
T 2mas_A 160 ATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAV 239 (314)
T ss_dssp SSSSCCHHHHTCHHHHHHHHHSSSCEEEECHHHHTTCEECHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHSTTCCSSEEC
T ss_pred CCchhHHHhhcCHHHHHHHHhCCCCEEEeChhhhcccccCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCCCcC
Confidence 99999999999999999999999999999999999999999999999988889999999999999998876666678999
Q ss_pred cccchhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 262 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 262 ~D~la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
||++|++++++|++|++++.+|+|+++| .+||+|++|+... ++..+|++|+.++|.++|+++|.++|.+
T Consensus 240 hD~lava~~~~p~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 309 (314)
T 2mas_A 240 HDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNP-------RPEHCHTQVAVKLDFEKFWGLVLDALER 309 (314)
T ss_dssp CHHHHHHHHHCGGGEEEEECCEEECSSCSSCTTCEEECCCSS-------CCSSCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHcChhheEEEEEeEEEEeCCCCCCceEEEecccc-------CCCCCCEEEEeecCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998 5999999997532 1245799999999999999999999864
No 5
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.3e-81 Score=590.16 Aligned_cols=304 Identities=30% Similarity=0.440 Sum_probs=282.7
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 102 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 102 (338)
++|||||||+|+||++||++|+ ++++|+|||+++||++++++++|++++|+++|+++||||+|+.+||.++. ..+++
T Consensus 1 M~kvIiD~D~G~DDa~Allla~--~~~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~ 77 (306)
T 3t8i_A 1 MRKVIVDSDTATDDTIAILLAS--RFFQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQDVPVYLGSQRPILGNW-RTVEE 77 (306)
T ss_dssp CCEEEEEECCSTHHHHHHHHHH--HHSEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCTTCCC-CCCHH
T ss_pred CcEEEEECCCChHHHHHHHHhC--CCCEEEEEEEccCCCCHHHHHHHHHHHHHhcCCCCCcEEEcCCccCCCCC-ccccc
Confidence 4799999999999999997765 48999999999999999999999999999999999999999999998753 46778
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCC
Q 019632 103 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 182 (338)
Q Consensus 103 ~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 182 (338)
+||++|||+..+|.+...+.+.+|+++|+++++++|++|||+++|||||||+||+++|++.++||+||+|||++ .+||+
T Consensus 78 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iviMGG~~-~~GN~ 156 (306)
T 3t8i_A 78 VHGSNGMSNWNYPEPNKRPEKEHAIDAILRLSKEHEGELEILAISPLTNIALAYLKDPSVVKRVKKIWIMGGAF-SKGNT 156 (306)
T ss_dssp HHCTTSSTTCCCCCCSCCCCSSCHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCGGGGGTCCEEEEECCCS-SCCSS
T ss_pred ccCCCCCCccCCCCccCCcCCccHHHHHHHHHHhCCCCEEEEEecChHHHHHHHHHChhHHhhcCEEEEecCCC-CCCCC
Confidence 99999999999998888778899999999999999999999999999999999999999999999999999997 58999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEeccccccc-ccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCccccc
Q 019632 183 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQV-KLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 261 (338)
Q Consensus 183 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 261 (338)
+|.||||||+|||||++||+|++|++|+|||+|+++ .++++++++|++.+++.++|+.+++++|..|+.+..+..++++
T Consensus 157 tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~~ 236 (306)
T 3t8i_A 157 TPIAEFNFWVDPEAAKIVLDAGFDITIVPWEVAEISGSLNERDWEYISKLNTKLSNFFINVNKTLKEYTTKNQGISGSIH 236 (306)
T ss_dssp SSSCCHHHHHCHHHHHHHHHTTCCEEEECHHHHHHHSEEEHHHHHHHHHHCCHHHHHHHHHTHHHHHHHHHHHSSSEEEC
T ss_pred CCchhhccccCHHHHHHHHhCCCCceEecchhccccccCCHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcCCCCCcC
Confidence 999999999999999999999999999999999999 9999999999998899999999999999998777677789999
Q ss_pred cccchhhhhccCCee-eeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 262 HDPVSFVALVRPDLF-TFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 262 ~D~la~a~~~~P~l~-~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
||++|++++++|+++ ++++.+|+||++|.+||+|++|+.+. +...+|++|+.++|.++|+++|.++|.+
T Consensus 237 hD~lava~~l~P~l~~~~~~~~v~Ve~~g~t~G~tv~D~~~~-------~~~~~n~~V~~~vD~~~f~~~~~~~l~~ 306 (306)
T 3t8i_A 237 PDSLTVSIAHDNSIILDSSLKYVDVELCSKSRGAMLIDWYSL-------HKNKPNAEIVLKADGGKFKNLLFNSLSQ 306 (306)
T ss_dssp HHHHHHHHHHCGGGEEEEEEECEEECCSGGGTTCEEECTTCC-------SSCCCCEEEEEEECHHHHHHHHHHHHHC
T ss_pred CCHHHhhhhccccceeEEEEEEEEEEECCCCCeeEEeccccc-------CCCCCCeEEEeccCHHHHHHHHHHHhhC
Confidence 999999999999975 57889999999988999999997532 2356899999999999999999999864
No 6
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Probab=100.00 E-value=4.4e-80 Score=593.11 Aligned_cols=314 Identities=26% Similarity=0.362 Sum_probs=273.8
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCc
Q 019632 20 STNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRV 99 (338)
Q Consensus 20 ~~~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~ 99 (338)
.++++|||||||+|+||++||+|||++|+++|+|||+|+||++++++++|++++|+++|+ +||||+|+..||.++ ..
T Consensus 3 ~m~~~kvIiD~D~G~DDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~-dIPV~~Ga~~pl~~~--~~ 79 (360)
T 3fz0_A 3 HMVHRKLIIDTDCGGDDAIAIMLAMTQPDVEVIAITVVWGNVEVNQGMENIGKLLDLYDA-DIPFFRGAEGPLVGE--RE 79 (360)
T ss_dssp --CEEEEEEEECCCHHHHHHHHHHHTSTTEEEEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCCEEECCSSCSSSS--CC
T ss_pred CCCCceEEEECCCChHHHHHHHHHHhCCCCEEEEEEEecCCCCHHHHHHHHHHHHHHcCC-CCCEEEcCCCCCCCC--cc
Confidence 356789999999999999999999999999999999999999999999999999999999 999999999999886 46
Q ss_pred cccc--cCCCCCCCCCCCCCCC--CCCCccHHHHHHHHHHcC-CCc---EEEEEecchhHHHHHHhhCcchhhcc-----
Q 019632 100 AEFA--HGSDGMGNISLTPPKA--KKCDKNASEFLVDKVSEY-PGE---VSILALGPLTNLALAIKRDSSFASKV----- 166 (338)
Q Consensus 100 ~~~~--hg~dGlg~~~~p~~~~--~~~~~~a~~~i~~~~~~~-p~~---vtila~GPLTNlA~al~~~P~~~~~i----- 166 (338)
++++ ||.+|||+..+|.+.. .+.+.+|+++|+++++++ |++ ||||++|||||||+||+++|++.++|
T Consensus 80 ~~~~~~hG~~Glg~~~~p~~~~~~~~~~~~A~~~i~~~~~~~~p~~~~~vtiva~GPLTNlA~al~~~P~~~~~ig~~kv 159 (360)
T 3fz0_A 80 TVQWGGFGSDGFGDAGFPPSQRVALQPKRHAALEILKILEEAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDTI 159 (360)
T ss_dssp SCCCCTTCTTSSCSCCCCCCSHHHHSCCSCHHHHHHHHHHHCCCCSSEEEEEEECSCSHHHHHHHHHCGGGGGGSSCSSS
T ss_pred hHHHHhhcccCcCcccCCCCccccccCCccHHHHHHHHHHhcCCCCCceEEEEEecChHHHHHHHHhChHHHhhhccccC
Confidence 6778 9999999998887643 345789999999999999 888 99999999999999999999999999
Q ss_pred ceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhc-CC--cEEEEecccccccccCHHHHHHHHhcCCc-HH------
Q 019632 167 KNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS-GA--NIAVVGINITTQVKLTDADFLELRQSKGR-YV------ 236 (338)
Q Consensus 167 ~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s-~~--~i~~v~ldvt~~~~~~~~~~~~l~~~~~~-~~------ 236 (338)
|+||+|||++..+||++|.||||||+|||||++||+| |+ |++|+|||+|+++.++++++++|.+..++ .+
T Consensus 160 ~~iviMGG~~~~~GN~tp~aEfN~~~DPeAA~~V~~s~g~~~~i~~v~ldvt~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 239 (360)
T 3fz0_A 160 PGIVIMNGTSESKGNSNMAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFYDKLVNRESTPNGRVAVNQ 239 (360)
T ss_dssp CSEEEECCCSSCCCSSSSSCCHHHHHCHHHHHHHHHCSCCSSCEEEECHHHHHTSCEEHHHHHHHTTC-----------C
T ss_pred cEEEEECCCccCCCCCCCCcccccCcCHHHHHHHHhCcCCCCCeEEECccceeeeecCHHHHHHHHhcCCCccccccccc
Confidence 9999999999889999999999999999999999999 65 99999999999999999999999876665 66
Q ss_pred ----HHHHHHHHHHHHhhhhc-------------CCCccccccccchhhhhccCCeee-eEEeeEEEEecC-CcceeEEE
Q 019632 237 ----QLLGDMCKFYRDWHVKS-------------DGVHGIFLHDPVSFVALVRPDLFT-FKKGVVRVETQG-ICMGHTLM 297 (338)
Q Consensus 237 ----~~l~~~~~~~~~~~~~~-------------~~~~~~~l~D~la~a~~~~P~l~~-~~~~~v~V~~~g-~~~G~tv~ 297 (338)
+|+.+++++|..|++.. .+..++++||++|++++++|++|+ .++.+|+||++| .+||+|++
T Consensus 240 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~g~~~~~lHD~lava~~l~P~l~~~~~~~~V~Ve~~g~~trG~Tv~ 319 (360)
T 3fz0_A 240 NKWQEFIEKLFQRLEAFTRIHDDGTRADTGDAEATQDVTCVVPDAVAVLVAIRPESVLDSFLTYVTVELHGRETRGATCI 319 (360)
T ss_dssp CHHHHHHHHHHHHHHHHHC------------------CEECCHHHHHHHHHHCGGGEEEEEEECEEECSSCSSCTTCEEE
T ss_pred chHHHHHHHHHHHHHHHHhhhccccccccccccccCcCCCccccHHHHHHHhChhheeeEEEEEEEEEeCCCCcceEEEe
Confidence 99999999998876532 234557999999999999999996 788999999998 69999999
Q ss_pred ecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632 298 DQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 298 d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 337 (338)
|+.+. |.....++..+|++|++++|.++|+++|.++|..
T Consensus 320 D~~~~-~~~~~~~~~~~n~~V~~~vD~~~f~~~~~~~l~~ 358 (360)
T 3fz0_A 320 DWYGT-EQSMAKKGRWRNCNVITKVDNEMFLKALRDIVEY 358 (360)
T ss_dssp CSSCC-HHHHHHTTCCCCEEEEEEECHHHHHHHHHHHHTC
T ss_pred ccccc-cCcccccCCCCCeEEeEecCHHHHHHHHHHHhcc
Confidence 97642 1100001223899999999999999999999853
No 7
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=100.00 E-value=1.3e-76 Score=562.69 Aligned_cols=301 Identities=24% Similarity=0.306 Sum_probs=258.8
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 102 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 102 (338)
++|||||||+|+||++||+|||++|+++|+|||+|+||++++++++|++++|+++|+++||||+|+.+||... .....
T Consensus 1 m~kvIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~--~~~~~ 78 (312)
T 2c40_A 1 MKKVYFNHDGGVDDLVSLFLLLQMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGKNTIEVAASNSRGKNPF--PKDWR 78 (312)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHCCSCCCEEECCCCCSSCC--CHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEecCCCcHHHHHHHHHHHHHHcCCCCCCEecCCCccccCC--Ccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999642 12334
Q ss_pred ccCC--CCCCCCCCCCC-CCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCC
Q 019632 103 AHGS--DGMGNISLTPP-KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 179 (338)
Q Consensus 103 ~hg~--dGlg~~~~p~~-~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 179 (338)
.||. +|++....|.+ .....+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++..+
T Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGGa~~~~ 158 (312)
T 2c40_A 79 MHAFYVDALPILNESGKVVTHVAAKPAHHHLIETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTA 158 (312)
T ss_dssp THHHHHHTCHHHHTTSCCCSCBCSSCHHHHHHHHHHHSSSCEEEEESSCSHHHHHHHHHCGGGGGGEEEEEEECCCCSSC
T ss_pred cccccCCCcccCCCCCcccCCCCCccHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChhHHhhcCEEEEeCCcccCC
Confidence 5664 56543333322 23345789999999999999999999999999999999999999999999999999999888
Q ss_pred CCCC-----ccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcC-CcHHHHHHHHHHHHHHhhhhc
Q 019632 180 GNVN-----PAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSK-GRYVQLLGDMCKFYRDWHVKS 253 (338)
Q Consensus 180 GN~~-----~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~ 253 (338)
||++ |.||||||+|||||++||+|++|++|+|||+|+++.++++++++|.+.+ ++.++|+.+++..|..+ ...
T Consensus 159 GN~t~p~~~p~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (312)
T 2c40_A 159 GNVHEPEHDGTAEWNSFWDPEAVARVWEANIEIDLITLESTNQVPLTIDIREQWAKERKYIGIDFLGQCYAIVPPL-VHF 237 (312)
T ss_dssp CSCCCTTCCSCCCHHHHHCHHHHHHHHHSSCCEEEECGGGGTTCBCCHHHHHHHHHTTTSHHHHHHHHHHHTSCCC----
T ss_pred CCccCCCCCCcchhhhccCHHHHHHHHcCCCCEEEEccccccceecCHHHHHHHHhcCCChHHHHHHHHHHhhhhh-hhh
Confidence 9998 8999999999999999999999999999999999999999999998765 57888887765543110 000
Q ss_pred CCCccccccccchhhhhccCCeeeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHH
Q 019632 254 DGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKR 333 (338)
Q Consensus 254 ~~~~~~~l~D~la~a~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~ 333 (338)
....++++||++|++++++|++|++++.+|+|+++|.+||+|++|+. .++++|+.++|.++|+++|.+
T Consensus 238 ~~~~~~~lhD~lava~~~~p~l~~~~~~~v~V~~~g~~~G~tv~d~~------------~~~~~v~~~vD~~~f~~~~~~ 305 (312)
T 2c40_A 238 AKNSTYYLWDVLTAAFVGKADLAKVQTINSIVHTYGPSQGRTVETDD------------GRPVHVVYDVNHDRFFDYITR 305 (312)
T ss_dssp -----CBCHHHHHHHHHHCGGGSEEEEEEEEECCSSTTTTCEEEEEE------------EEEEEEEECCCHHHHHHHHHH
T ss_pred cccCCCcccCHHHHHHHcCccceeeEEEEEEEEeCCCCCceEEEecC------------CCceEEEeecCHHHHHHHHHH
Confidence 12356899999999999999999999999999999999999999963 246999999999999999999
Q ss_pred HHhcC
Q 019632 334 LLMKQ 338 (338)
Q Consensus 334 ~l~~~ 338 (338)
+|.++
T Consensus 306 ~l~~~ 310 (312)
T 2c40_A 306 LAKKV 310 (312)
T ss_dssp HHC-C
T ss_pred HHhhc
Confidence 98763
No 8
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=100.00 E-value=1.8e-75 Score=559.17 Aligned_cols=303 Identities=20% Similarity=0.268 Sum_probs=262.3
Q ss_pred CCCceEEEecCCCchHHHHHHHHHcCCC-CeEEEEEeecCCCChHHHHHHHHHHHHHhCCCC----CCcccCCCCCCCCC
Q 019632 21 TNPAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCPG----VPVAEGSPEPLKGG 95 (338)
Q Consensus 21 ~~~~~vIiDtD~G~DD~~AL~~al~~~~-v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~d----IPV~~Ga~~pl~~~ 95 (338)
.+.+|||||||+|+||++||+|||++|+ +||+|||||+||++++++++|++++|+++|+.+ ||||+|+.+||...
T Consensus 11 ~~~~~vilD~DpGiDDa~AL~~al~~p~~iel~gITtv~GN~~~~~~~~Nal~lL~~~g~~d~~~~IPV~~Ga~~pl~~~ 90 (338)
T 3epw_A 11 GSAKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPF 90 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHCTTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCSSCC
T ss_pred CccceEEEECCCChHHHHHHHHHHhCCCCeEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCCccceEeCCCCCCCCC
Confidence 4568999999999999999999999999 999999999999999999999999999999988 99999999999652
Q ss_pred CCCccccccCCCCCCCCC-CCCC---------CCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhC-cchhh
Q 019632 96 KPRVAEFAHGSDGMGNIS-LTPP---------KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRD-SSFAS 164 (338)
Q Consensus 96 ~~~~~~~~hg~dGlg~~~-~p~~---------~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~-P~~~~ 164 (338)
. .....||. |+++.. ++.| ...+.+.+|+++|+++++++|++||||++|||||||+||+++ |++.+
T Consensus 91 ~--~~~~~~~~-~~~~~~~~~~~g~~~l~~~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~gP~~~~ 167 (338)
T 3epw_A 91 P--KEWRCLAK-NMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTS 167 (338)
T ss_dssp C--HHHHTHHH-HHHTCGGGCCHHHHHHHHHHHHHHHTSBHHHHHHHHHHHCSSCEEEEECSCTHHHHHHHHHHTHHHHT
T ss_pred C--CcceeccC-cCCCCccCCcccccccCCCCCCccCCccHHHHHHHHHHhCCCceEEEECCCchHHHHHHHHcCHHHHH
Confidence 1 12235653 333321 2221 223357899999999999999999999999999999999999 99999
Q ss_pred ccceEEEecCCCCCCCCCC-----ccccccccCCHHHHHHHHh-cCCcEEEEecccccccccCHHHHHHHHhcC-CcHHH
Q 019632 165 KVKNIVVLGGAFFALGNVN-----PAAEANIYGDPEAADVVFT-SGANIAVVGINITTQVKLTDADFLELRQSK-GRYVQ 237 (338)
Q Consensus 165 ~i~~iviMGG~~~~~GN~~-----~~aEfN~~~DPeAA~~Vl~-s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~-~~~~~ 237 (338)
+||+||+|||++..+||++ |.||||||+|||||++||+ |++|++|+|||+|+++.++++++++|.+.+ ++.++
T Consensus 168 ~i~~iviMGG~~~~~GN~t~~~~~~~aEfN~~~DPeAA~~V~~~sg~~i~~vpLdvT~~~~~t~~~~~~l~~~~~~~~~~ 247 (338)
T 3epw_A 168 KVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSI 247 (338)
T ss_dssp TEEEEEEECCCSSSCCSCCCTTSCSCCCHHHHHSHHHHHHHHTCTTCCEEEECHHHHTTCBCCHHHHHGGGGGTTSHHHH
T ss_pred hCCEEEEecCCCCCCCCccccCCCCcchhccccCHHHHHHHHhhcCCCEEEeCcccccCccCCHHHHHHHHhhCCCHHHH
Confidence 9999999999998889998 7999999999999999999 999999999999999999999999998755 57889
Q ss_pred HHHHHHHHHHHhhhhcCCCccccccccchhhhhccCCeeeeEEeeEEEEe-cCCcceeEEEecCCcccccCCCCCCCCCc
Q 019632 238 LLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVET-QGICMGHTLMDQGLKRWNVSNPWTGYSPV 316 (338)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~l~D~la~a~~~~P~l~~~~~~~v~V~~-~g~~~G~tv~d~~~~~~~~~~~~~~~~~v 316 (338)
|+.+++..|..+... ....++++||++|++++++|++|++++.+|+|++ .|.+||+|++|+.+ ..+|+
T Consensus 248 ~~~~~~~~~~~~~~~-~~~~g~~lhDplAva~~l~P~l~~~~~~~v~Ve~~~g~t~G~Tv~d~~~----------~~~n~ 316 (338)
T 3epw_A 248 LVGTMWAMCTHCELL-RDGDGYYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVRTDAE----------NYPLT 316 (338)
T ss_dssp HHHHHHHTTTTHHHH-STTCCCBCHHHHHHHHHHCGGGCEEEEEEEEECCSSSTTTTCEEECCCT----------TCCEE
T ss_pred HHHHHHHHHHHHHhh-ccCCCCcCchHHHHHHHcCccceEEEEEEEEEEeCCCCCCceEEEecCC----------CCCce
Confidence 998877665333221 2336789999999999999999999999999999 57999999999642 25699
Q ss_pred EEEeecCHHHHHHHHHHHHhc
Q 019632 317 SVAWTVNVDKVLNYIKRLLMK 337 (338)
Q Consensus 317 ~v~~~vD~~~f~~~l~~~l~~ 337 (338)
+|++++|.++|+++|+++|.+
T Consensus 317 ~V~~~vD~~~F~~~~~~~l~~ 337 (338)
T 3epw_A 317 FVARNPEAEFFLDMLLRSARA 337 (338)
T ss_dssp EEEESCCHHHHHHHHHHHTTC
T ss_pred EEeeccCHHHHHHHHHHHHhh
Confidence 999999999999999999865
No 9
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=99.29 E-value=1.7e-11 Score=118.97 Aligned_cols=133 Identities=21% Similarity=0.285 Sum_probs=93.7
Q ss_pred CCCceEEEecCCC--chHHHHHHHHHcCC-CCeEEEEEeecC----C-CC---hHHHHHHHHHHHHHhCCC--CCCc---
Q 019632 21 TNPAKLIIDTDPG--IDDSMTILMAFQTP-ELEILGLTTIFG----N-VT---TEDATRNALTLCEMAGCP--GVPV--- 84 (338)
Q Consensus 21 ~~~~~vIiDtD~G--~DD~~AL~~al~~~-~v~v~gIt~v~G----n-~~---~~~~~~na~~ll~~~g~~--dIPV--- 84 (338)
..|.||||+||.+ +||.++|+.+|..+ +++|.||+.++. + +. .+...+.-.+++..+++. ..|.
T Consensus 26 ~~k~RviI~TDi~nEpDD~~Slvr~Llysn~~dieGivat~s~~~~~~~~~~~i~~ii~aY~~v~~nL~~h~~~yP~~~~ 105 (437)
T 2yhg_A 26 GGRYRVIHTTDMGADPDDEQSLVRQLVMANEYDLEGIITTTGCWKKSTSNTAYVDRILNAYSQAYPNLSKHAEGFPTPAY 105 (437)
T ss_dssp -CCCEEEEEECTTSCTHHHHHHHHHHHTGGGSEEEEEEECCBTTBCCCCCCHHHHHHHHHHHHHHHHHTTTSTTCCCHHH
T ss_pred cCCceEEEeCCCCCCCccHHHHHHHHhCcccceEeEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 3678999999976 99999999998875 799999988753 2 22 121111223455555543 3443
Q ss_pred -----ccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcC-CCcEEEEEecchhHHHHHHhh
Q 019632 85 -----AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR 158 (338)
Q Consensus 85 -----~~Ga~~pl~~~~~~~~~~~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~-p~~vtila~GPLTNlA~al~~ 158 (338)
+.|+... ||.+. ..+.+.+|.++|++.+++. +.+|.|++.|.+|+||.||.+
T Consensus 106 Lrs~v~~G~~~y----------------gm~~~------g~~~~s~gs~~Ii~~~~~~d~rPL~i~~wGG~n~lAqAL~~ 163 (437)
T 2yhg_A 106 LDSINVMGQRGY----------------GMGDV------GSGKDSAGSNLIIAAVDKDDPRPVWATCWGGCNTIAQAVWK 163 (437)
T ss_dssp HHHTEEECCSSC----------------GGGGC------STTCCCHHHHHHHHHHHSSCSSCEEEEESSCSHHHHHHHHH
T ss_pred hhhhhccCCccc----------------CCCcC------CCCCCChHHHHHHHHHhCCCCCceEEEEecCHhHHHHHHHH
Confidence 4444321 11111 1123578999999999875 678999999999999999999
Q ss_pred C---------cchhhccceEEEecCCC
Q 019632 159 D---------SSFASKVKNIVVLGGAF 176 (338)
Q Consensus 159 ~---------P~~~~~i~~iviMGG~~ 176 (338)
. |+|.+|| +||+.||-=
T Consensus 164 ~~~~~~~~~~~~i~~kl-rvy~Ig~qd 189 (437)
T 2yhg_A 164 VQNTRSQAQLDAFISKL-RVYDILGQD 189 (437)
T ss_dssp HHHHSCHHHHHHHHHTE-EEEEESCCS
T ss_pred hhhhcCcchhHHHhhcE-EEEEecCcc
Confidence 9 9999999 799988863
No 10
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=49.71 E-value=65 Score=30.24 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=44.3
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCC-------hHHHHHHHHHHHHHhCCCCCCcc
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT-------TEDATRNALTLCEMAGCPGVPVA 85 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~-------~~~~~~na~~ll~~~g~~dIPV~ 85 (338)
...+|++=.=.|.|-++++.++... ..+|.||+...+.-. .+...+.++++.+.+| ||.+
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LG---Ip~~ 82 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQQ-GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG---IELH 82 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHTT-CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHT---CCEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHc-CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcC---CcEE
Confidence 3568999999999887777666554 699999998876432 3445677888888887 5654
No 11
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=46.01 E-value=33 Score=28.91 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=38.2
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 78 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g 78 (338)
+.+|++=.=+|+|-.+++.++ ..-..++.+++..+|... ..+.+.++.+.+|
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll-~~~g~~v~~~~v~~~~~~---~~~~~~~~a~~lg 57 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVIL-KKLGYNPHLITINFGVIP---SYKLAEETAKILG 57 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHH-HHTTEEEEEEEEECSSSC---TTHHHHHHHHHHT
T ss_pred CCeEEEEEECcHHHHHHHHHH-HHcCCCeEEEEEeCCCch---HHHHHHHHHHHhC
Confidence 468999999999766655444 434589999999888654 3457777888877
No 12
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=41.18 E-value=69 Score=29.93 Aligned_cols=59 Identities=15% Similarity=0.375 Sum_probs=44.2
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCC-------ChHHHHHHHHHHHHHhCCCCCCcc
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNV-------TTEDATRNALTLCEMAGCPGVPVA 85 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~-------~~~~~~~na~~ll~~~g~~dIPV~ 85 (338)
.++|++=.=.|.|-++++.++... ..+|.||+...|.- ..+...+.+.++.+.+| ||.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lG---Ip~~ 74 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQ-GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIG---IPYY 74 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHT---CCEE
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHc-CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhC---CcEE
Confidence 468999999999877766666554 68999999887742 23455778888888887 5554
No 13
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=39.10 E-value=79 Score=30.07 Aligned_cols=59 Identities=15% Similarity=0.350 Sum_probs=41.5
Q ss_pred CceEEEecCCCchHHHHHHHHHcC-----CCCeEEEEEeecCCC-ChHHHHHHHHHHHHHhCCCCCCcc
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQT-----PELEILGLTTIFGNV-TTEDATRNALTLCEMAGCPGVPVA 85 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~-----~~v~v~gIt~v~Gn~-~~~~~~~na~~ll~~~g~~dIPV~ 85 (338)
..+|++=.=+|.| .++|+++|.. .++++.++++.+|-- ..+.-.+.+.++++.+| ||.+
T Consensus 13 ~~~vlVa~SGG~D-S~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lg---i~~~ 77 (433)
T 1ni5_A 13 SRQILVAFSGGLD-STVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ---VPLV 77 (433)
T ss_dssp CSEEEEECCSBHH-HHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTT---CCEE
T ss_pred CCEEEEEEcchHH-HHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcC---CcEE
Confidence 4679999989995 6666666653 678999999988854 23444556677777766 5654
No 14
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=38.87 E-value=70 Score=26.65 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=40.0
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
+.+|++=.=.|+|-.+.+.++... ..+|.+++..+|.... ...+.+.++.+.+|.
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~-~~~v~~~~~~~~~~~~-~e~~~a~~~a~~lgi 57 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-FEEVETVTFHYNQRHS-QEVEVAKSIAEKLGV 57 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSCTTC-HHHHHHHHHHHTTCC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc-CCceEEEEEeCCCCCH-HHHHHHHHHHHHhCC
Confidence 467999999999776665555443 3789999999886543 346678888887773
No 15
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.69 E-value=67 Score=26.05 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=28.1
Q ss_pred CCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCC
Q 019632 47 PELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSP 89 (338)
Q Consensus 47 ~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~ 89 (338)
-+.+++|+++..+. .........+.|+..|..++||..|-.
T Consensus 68 ~~~diV~lS~~~~~--~~~~~~~~i~~L~~~g~~~i~v~vGG~ 108 (161)
T 2yxb_A 68 EDVDVIGVSILNGA--HLHLMKRLMAKLRELGADDIPVVLGGT 108 (161)
T ss_dssp TTCSEEEEEESSSC--HHHHHHHHHHHHHHTTCTTSCEEEEEC
T ss_pred cCCCEEEEEeechh--hHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 36789999887653 334455556666777766899998753
No 16
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=29.00 E-value=77 Score=31.42 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=48.0
Q ss_pred CCCceEEEecCCCchHHHHHHHHHc-CCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCC--CCCcc
Q 019632 21 TNPAKLIIDTDPGIDDSMTILMAFQ-TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCP--GVPVA 85 (338)
Q Consensus 21 ~~~~~vIiDtD~G~DD~~AL~~al~-~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~--dIPV~ 85 (338)
...++++|---.|+|.++++++|.. -+.-.|+||+ .++..+.+.+..+|..+.+.+|.. .|||-
T Consensus 298 ~g~~~~vlglSGGiDSal~~~la~~alg~~~v~~v~-mp~~~ts~~t~~~a~~la~~lg~~~~~i~i~ 364 (565)
T 4f4h_A 298 NGFPGAIIGLSGGVDSALVLAVAVDALGAERVRAVM-MPSRYTAGISTTDAADMARRVGVRYDEIAIA 364 (565)
T ss_dssp TTCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEE-CCCTTCCHHHHHHHHHHHHHHTCEEEECCCH
T ss_pred cCCCcEEEecCCCccHHHHHHHHHHHhCCccEEEEe-ccccccccchHHHHHHHHHHhCCceeeeecc
Confidence 3467899999999999998888643 2234578885 466666777889999999999953 46653
No 17
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=26.39 E-value=85 Score=30.12 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=41.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHcC----CCCeEEEEEeecCCCC--hHHHHHHHHHHHHHhCCCCCCcc
Q 019632 22 NPAKLIIDTDPGIDDSMTILMAFQT----PELEILGLTTIFGNVT--TEDATRNALTLCEMAGCPGVPVA 85 (338)
Q Consensus 22 ~~~~vIiDtD~G~DD~~AL~~al~~----~~v~v~gIt~v~Gn~~--~~~~~~na~~ll~~~g~~dIPV~ 85 (338)
...+|++=.-+|.| .++|+++|.. ..+++.++++.+|--. .+.-.+.+.++++.+| ||.+
T Consensus 17 ~~~~vlVa~SGG~D-S~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg---i~~~ 82 (464)
T 3a2k_A 17 EGAAVIVGVSGGPD-SLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR---ILCE 82 (464)
T ss_dssp CSSBEEEECCSSHH-HHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT---CEEE
T ss_pred CCCEEEEEEcCcHH-HHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcC---CcEE
Confidence 34679999999995 6666666553 5689999999998642 2344556677777766 5544
No 18
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=26.35 E-value=2.2e+02 Score=24.66 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCceEEEecCCC---------chHHHHHHHHHc-CCCCeEEEEEeecCCCC
Q 019632 22 NPAKLIIDTDPG---------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 62 (338)
Q Consensus 22 ~~~~vIiDtD~G---------~DD~~AL~~al~-~~~v~v~gIt~v~Gn~~ 62 (338)
.+.+|+|-.|+| .+|+.+++-.+. .|.+++.|+-|..+...
T Consensus 122 ~~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~~~~~l~l~Glmt~~~~~~ 172 (245)
T 3sy1_A 122 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLSAIPAPES 172 (245)
T ss_dssp CCEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHTTCTTEEEEEEECCCCCCS
T ss_pred CCceEEEEEECCCCcCCcCCCHHHHHHHHHHHHcCCCCeEEEEEEeCCCCC
Confidence 356888777765 478888776655 68999999977665543
No 19
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=26.33 E-value=1.8e+02 Score=27.77 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=42.2
Q ss_pred CCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 21 TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 21 ~~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
-++.||++=.=.|+|-.+++.+|... ..+|+|+|...|.. .-.+.|+++.+.+|.
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke~-G~eViavt~d~Gq~---~Ele~A~~vA~~lGi 66 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVGQK---DDFVAIKEKALKTGA 66 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEESSCC---CCHHHHHHHHHHHTC
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHHC-CCeEEEEEEEcCCH---HHHHHHHHHHHHcCC
Confidence 56788999999999988888888776 78999999999863 124566777777774
No 20
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.10 E-value=43 Score=26.41 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=35.6
Q ss_pred EecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCC
Q 019632 28 IDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSP 89 (338)
Q Consensus 28 iDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~ 89 (338)
+-.|.-.++....+.- .+.+++++++..+. ......+..+.|+..|..++||+.|-.
T Consensus 37 lG~~~p~e~~v~~a~~---~~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 37 IGVLSPQELFIKAAIE---TKADAILVSSLYGQ--GEIDCKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp EEEEECHHHHHHHHHH---HTCSEEEEEECSST--HHHHHTTHHHHHHHTTCTTCEEEEEES
T ss_pred CCCCCCHHHHHHHHHh---cCCCEEEEEecCcC--cHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 4344445554443332 35789999887753 333455667777777866899988753
No 21
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=24.20 E-value=1.2e+02 Score=22.12 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=28.8
Q ss_pred ccccccccCCHHHHHHHHhc-----CCcEEEEecccccccccCHHHHH
Q 019632 184 PAAEANIYGDPEAADVVFTS-----GANIAVVGINITTQVKLTDADFL 226 (338)
Q Consensus 184 ~~aEfN~~~DPeAA~~Vl~s-----~~~i~~v~ldvt~~~~~~~~~~~ 226 (338)
+..|.|+..||+|.+.+.+. .+|.++++ |=+.-..++.++++
T Consensus 30 ~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~-Dg~~l~~~~~~el~ 76 (92)
T 2lqo_A 30 AYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFA-DGSTLTNPSADEVK 76 (92)
T ss_dssp CCEEEETTTCHHHHHHHHHHSSSSSCSCEEEET-TSCEEESCCHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEe-CCEEEeCCCHHHHH
Confidence 56799999999999999862 36887774 32223345555553
No 22
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=23.42 E-value=2.2e+02 Score=26.34 Aligned_cols=58 Identities=10% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCceEEEecCCC---c-----------hHHHHHHHHHc---C--CCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 22 NPAKLIIDTDPG---I-----------DDSMTILMAFQ---T--PELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 22 ~~~~vIiDtD~G---~-----------DD~~AL~~al~---~--~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
.+..||+=.++| + .+...+..+++ + +.++|+||+...-+.+.+....|...+-+.+|.
T Consensus 253 ~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~gl 329 (349)
T 2obn_A 253 QPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGL 329 (349)
T ss_dssp CCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHCC
Confidence 456688878865 4 56676666664 3 789999999877777777777777788788773
No 23
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=22.14 E-value=1.3e+02 Score=26.41 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=42.3
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
..+|++=.-+|+|-++++.++......++.+++.-+|..+ ....++|.++.+.+|.
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~~~-~~e~~~a~~~a~~lgi 80 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSM-PENKTDALNLCEKFSI 80 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCCCC-HHHHHHHHHHHHHcCC
Confidence 4579999999998887776665432367999988888644 4557789999999884
No 24
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=21.58 E-value=2.4e+02 Score=24.73 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCceEEEecCCCc---------hHHHHHHHHHc-CCCCeEEEEEeecCCCC
Q 019632 22 NPAKLIIDTDPGI---------DDSMTILMAFQ-TPELEILGLTTIFGNVT 62 (338)
Q Consensus 22 ~~~~vIiDtD~G~---------DD~~AL~~al~-~~~v~v~gIt~v~Gn~~ 62 (338)
.+.+|+|..|+|. +|+.+++-.+. .|.+++.||-|-.|...
T Consensus 159 ~~~~V~lkVdtGme~~R~G~~~ee~~~l~~~i~~~~~l~l~Gl~th~~~~~ 209 (282)
T 3cpg_A 159 ITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTIGAHVH 209 (282)
T ss_dssp CCEEEEEEBCCSSCTTSSSBCGGGHHHHHHHHHTCTTEEEEEEECCCCCSS
T ss_pred CCceEEEEEECCCCCCCCCcCHHHHHHHHHHHHhCCCceEEeEEEECCCCC
Confidence 3468999998863 77777766554 68999999998888664
No 25
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=21.29 E-value=2.8e+02 Score=23.22 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=39.8
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCC
Q 019632 24 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 79 (338)
Q Consensus 24 ~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 79 (338)
.++++=-=.|+|-.+++.++.... .+|.+|+..+|.... .-.+.+.++.+.+|.
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~-~~v~av~~~~g~~~~-~e~~~a~~~a~~lgi 56 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY-DDVHCITFDYGQRHR-AEIEVAQELSQKLGA 56 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC-SEEEEEEEESSSSCH-HHHHHHHHHHHHHTC
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC-CCEEEEEEECCCCCH-HHHHHHHHHHHHhCC
Confidence 467777788998777666665543 689999999986543 346678888888884
No 26
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=20.56 E-value=56 Score=29.26 Aligned_cols=65 Identities=17% Similarity=0.336 Sum_probs=48.5
Q ss_pred HcC-CCcEEEEEecchhHHHHHHhhCcchhh----ccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcCCcEEE
Q 019632 135 SEY-PGEVSILALGPLTNLALAIKRDSSFAS----KVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAV 209 (338)
Q Consensus 135 ~~~-p~~vtila~GPLTNlA~al~~~P~~~~----~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~~i~~ 209 (338)
+++ |++=|+-++-...|----.+.+|.+.+ -.|-++|.||+....+ ..-+|+..+++.|+.+.+
T Consensus 29 ~~~~~gegT~~~isgFAnYnGgvrfy~~f~~h~~~Ggkv~~IlGgstsQrl-----------TSKQavEElL~cGvev~I 97 (358)
T 2c1l_A 29 SNHTPGEGTLYLISGFSNYNGGVRFYETFTEHINQGGRVIAILGGSTSQRL-----------SSRQVVEELLNRGVEVHI 97 (358)
T ss_dssp TTCCTTSSEEEEEESSBCGGGTTTTHHHHHHHHHTTCEEEEEEECCSSSCC-----------BBHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCceEEEEEeeeccCCceeecHHHHHHHhcCCcEEEEEcccccccc-----------cHHHHHHHHHhcCCceEE
Confidence 455 678788888888887777888887654 4466899999987543 236899999999876655
Q ss_pred E
Q 019632 210 V 210 (338)
Q Consensus 210 v 210 (338)
+
T Consensus 98 i 98 (358)
T 2c1l_A 98 I 98 (358)
T ss_dssp E
T ss_pred e
Confidence 5
Done!