BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019633
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 180
++++ E CP+C R + ++ +S + P + + EM++R G
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG 48
>pdb|4G10|A Chain A, Ligg From Sphingobium Sp. Syk-6 Is Related To The
Glutathione Transferase Omega Class
Length = 265
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 131 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190
P L ++ CPF RV + L + R ++ + GG P L+D
Sbjct: 3 EPQELTIYHIPGCPFSERVEIXLELKGLRXKDVEIDISKPRPDWLLAKTGGTTALP-LLD 61
Query: 191 PNTGVSMYESGDIVNYLFQQY 211
G S+ ES I+ YL Q+Y
Sbjct: 62 VENGESLKESXVILRYLEQRY 82
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 31.2 bits (69), Expect = 0.87, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 137 LFEFEACPFCRRVREAI-------TELDLSVEVFPCPKGSIRHREMVRRLGGKEQFP--F 187
L+ CP+C+R R+ + T++D S S+R +EMV+R G+ FP F
Sbjct: 10 LYTRPNCPYCKRARDLLDKKGVKYTDIDAST--------SLR-QEMVQRANGRNTFPQIF 60
Query: 188 LIDPNTG 194
+ D + G
Sbjct: 61 IGDYHVG 67
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 170 IRHREMVR----RLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRS 216
+ H E ++ +L + P L+D G+S++ES I+ YL +Y KG S
Sbjct: 35 LHHGEQLKPEYLKLNPQHTVPTLVD--DGLSIWESRAIITYLVNKYAKGSS 83
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 240 GMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYI---LQNVGDGSSRTKLL 296
G + W + D S + LFS PY + V++ L E ++ + L + +GS+ K L
Sbjct: 6 GTSQWLRKTVD--SAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 297 VDITGSKEVPYLIDPNTSTQIGDYKKILSY 326
+ + VP + IGD + +L Y
Sbjct: 64 ASFSKIETVPQMF--VRGKFIGDSQTVLKY 91
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 240 GMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYI---LQNVGDGSSRTKLL 296
G + W + D S + LFS PY + V++ L E ++ + L + +GS+ K L
Sbjct: 6 GTSQWLRKTVD--SAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 297 VDITGSKEVPYLIDPNTSTQIGDYKKILSY 326
+ + VP + IGD + +L Y
Sbjct: 64 ASFSKIETVPQMF--VRGKFIGDSQTVLKY 91
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 240 GMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYI---LQNVGDGSSRTKLL 296
G + W + D S + LFS PY + V++ L E ++ + L + +GS+ K L
Sbjct: 6 GTSQWLRKTVD--SAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 297 VDITGSKEVPYLIDPNTSTQIGDYKKILSY 326
+ + VP + IGD + +L Y
Sbjct: 64 ASFSKIETVPQMF--VRGKFIGDSQTVLKY 91
>pdb|2EJW|A Chain A, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|B Chain B, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|E Chain E, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|F Chain F, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
Length = 332
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 123 TQEISNSDSPTRLQLFEFEA-CPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG 181
+ + ++P RL L EA P + + E S+ F +G I H V + G
Sbjct: 71 VEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPF-AEEGLIYHEASV--MAG 127
Query: 182 KEQFPFLIDPNTGVSMYESGDIVN----YLFQQYGKGRSPSTGLLESTLITGWM---PTI 234
FL + G + E I+N Y+ Q+ KGR+ + LLE+ + G+ PT+
Sbjct: 128 TPALSFL-ETLRGSELLELHGILNGTTLYILQEMEKGRTYAEALLEAQRL-GYAEADPTL 185
Query: 235 ----FRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYILQNVGDGS 290
A +TL + DP P+A + + + L P +LQ
Sbjct: 186 DVEGIDAAHKLTLLARLLVDP-----------GFPFAEVEAQGIARLT-PEVLQKAEARG 233
Query: 291 SRTKLLVDITG 301
R +L+ + G
Sbjct: 234 ERVRLVASLFG 244
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|1F6F|A Chain A, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 199
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 171 RHREMVRRLGGKEQFPF--LIDPNTGVSMYES---GDIVNYLFQQYGKG 214
+H R GK Q P L D T V+ Y S G++VN +QYG+G
Sbjct: 2 QHPPYCRNQPGKCQIPLQSLFDRATTVANYNSKLAGEMVNRFDEQYGQG 50
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic
Get2 Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic
Get2 Fragment
Length = 354
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 180
++++ E CP+ R + ++ +S + P + + EM++R G
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG 48
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 126 ISNSDSPTRLQLFEFEACPFCRRVREAITEL 156
+++ P ++ +F CPFCR+ +E +++L
Sbjct: 5 VNSKIQPGKVVVFIKPTCPFCRKTQELLSQL 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,464,508
Number of Sequences: 62578
Number of extensions: 377965
Number of successful extensions: 783
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 20
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)