Query 019633
Match_columns 338
No_of_seqs 396 out of 2686
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:19:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03041 GST_N_2GST_N GST_N fam 99.8 1.4E-19 3.1E-24 139.8 8.9 77 134-211 1-77 (77)
2 cd03041 GST_N_2GST_N GST_N fam 99.8 4.6E-19 9.9E-24 137.0 7.7 77 255-331 1-77 (77)
3 PRK09481 sspA stringent starva 99.8 3.6E-18 7.9E-23 155.2 12.5 99 133-235 9-107 (211)
4 PRK15113 glutathione S-transfe 99.7 1.1E-17 2.3E-22 152.4 12.7 101 133-236 4-111 (214)
5 PRK11752 putative S-transferas 99.7 1.2E-17 2.5E-22 157.9 12.7 124 100-235 18-151 (264)
6 PF13417 GST_N_3: Glutathione 99.7 2.6E-17 5.7E-22 126.3 8.9 74 137-214 1-74 (75)
7 COG0625 Gst Glutathione S-tran 99.7 4.7E-17 1E-21 147.5 10.7 102 135-237 1-105 (211)
8 PRK13972 GSH-dependent disulfi 99.7 1.7E-16 3.6E-21 144.4 12.1 100 134-237 1-107 (215)
9 cd03059 GST_N_SspA GST_N famil 99.7 1.6E-16 3.4E-21 120.1 9.4 73 135-211 1-73 (73)
10 cd03045 GST_N_Delta_Epsilon GS 99.7 1.5E-16 3.3E-21 120.7 9.1 73 135-209 1-74 (74)
11 PLN02473 glutathione S-transfe 99.7 2E-16 4.4E-21 143.2 11.4 102 134-238 2-107 (214)
12 cd03048 GST_N_Ure2p_like GST_N 99.7 3.1E-16 6.8E-21 121.6 9.8 78 134-213 1-81 (81)
13 cd03048 GST_N_Ure2p_like GST_N 99.7 1.7E-16 3.8E-21 123.0 8.2 78 255-333 1-81 (81)
14 cd03052 GST_N_GDAP1 GST_N fami 99.7 2.7E-16 5.8E-21 120.7 8.8 71 135-208 1-73 (73)
15 KOG0406 Glutathione S-transfer 99.7 6E-16 1.3E-20 143.1 11.4 100 133-236 8-109 (231)
16 KOG0868 Glutathione S-transfer 99.6 3E-16 6.6E-21 138.7 8.3 101 134-236 5-107 (217)
17 cd03058 GST_N_Tau GST_N family 99.6 7.4E-16 1.6E-20 117.5 9.2 73 135-211 1-74 (74)
18 cd03037 GST_N_GRX2 GST_N famil 99.6 7.4E-16 1.6E-20 116.6 8.7 71 135-209 1-71 (71)
19 cd03060 GST_N_Omega_like GST_N 99.6 9.1E-16 2E-20 116.3 8.9 69 136-207 2-70 (71)
20 cd03052 GST_N_GDAP1 GST_N fami 99.6 5.3E-16 1.1E-20 119.1 7.5 71 256-328 1-73 (73)
21 PF13417 GST_N_3: Glutathione 99.6 7.3E-16 1.6E-20 118.3 8.0 74 258-334 1-74 (75)
22 cd03051 GST_N_GTT2_like GST_N 99.6 9.7E-16 2.1E-20 115.4 8.3 72 135-208 1-74 (74)
23 PRK10387 glutaredoxin 2; Provi 99.6 8.7E-16 1.9E-20 138.3 9.4 95 135-236 1-95 (210)
24 cd03045 GST_N_Delta_Epsilon GS 99.6 7.1E-16 1.5E-20 117.0 7.4 72 256-329 1-74 (74)
25 cd03050 GST_N_Theta GST_N fami 99.6 1.6E-15 3.5E-20 116.2 9.5 75 135-211 1-76 (76)
26 cd03053 GST_N_Phi GST_N family 99.6 1.6E-15 3.6E-20 115.7 9.3 74 135-210 2-76 (76)
27 cd03040 GST_N_mPGES2 GST_N fam 99.6 2E-15 4.3E-20 115.8 9.5 75 134-212 1-77 (77)
28 cd03056 GST_N_4 GST_N family, 99.6 1.9E-15 4.1E-20 113.8 8.9 71 135-208 1-73 (73)
29 TIGR01262 maiA maleylacetoacet 99.6 2.3E-15 5E-20 135.6 10.1 97 136-235 1-100 (210)
30 PRK10357 putative glutathione 99.6 2.9E-15 6.3E-20 134.5 10.7 99 135-236 1-99 (202)
31 cd03044 GST_N_EF1Bgamma GST_N 99.6 2.2E-15 4.9E-20 115.5 8.5 73 136-209 2-74 (75)
32 cd03061 GST_N_CLIC GST_N famil 99.6 2.7E-15 5.8E-20 120.6 8.8 70 141-214 20-89 (91)
33 cd03059 GST_N_SspA GST_N famil 99.6 2.4E-15 5.2E-20 113.6 8.0 73 256-331 1-73 (73)
34 PLN02395 glutathione S-transfe 99.6 9.5E-15 2.1E-19 132.2 12.0 99 134-236 2-104 (215)
35 cd03047 GST_N_2 GST_N family, 99.6 5.5E-15 1.2E-19 112.5 8.8 71 135-208 1-73 (73)
36 cd03055 GST_N_Omega GST_N fami 99.6 8.4E-15 1.8E-19 116.3 10.2 74 132-208 16-89 (89)
37 cd03076 GST_N_Pi GST_N family, 99.6 3.1E-15 6.7E-20 114.3 7.3 73 134-210 1-73 (73)
38 cd03057 GST_N_Beta GST_N famil 99.6 6.2E-15 1.3E-19 113.1 9.0 76 135-212 1-77 (77)
39 TIGR02182 GRXB Glutaredoxin, G 99.6 4.8E-15 1E-19 135.0 9.7 96 136-238 1-96 (209)
40 PF13409 GST_N_2: Glutathione 99.6 3.3E-15 7.2E-20 113.6 7.2 68 142-210 1-70 (70)
41 cd03080 GST_N_Metaxin_like GST 99.6 6.4E-15 1.4E-19 113.1 8.8 68 134-212 1-75 (75)
42 cd03039 GST_N_Sigma_like GST_N 99.6 2.9E-15 6.3E-20 113.6 6.8 72 135-209 1-72 (72)
43 PRK10542 glutathionine S-trans 99.6 5.9E-15 1.3E-19 132.0 9.6 101 135-237 1-104 (201)
44 cd03058 GST_N_Tau GST_N family 99.6 5.9E-15 1.3E-19 112.5 7.8 73 256-331 1-74 (74)
45 cd03050 GST_N_Theta GST_N fami 99.6 6.6E-15 1.4E-19 112.8 8.0 74 256-331 1-76 (76)
46 PRK09481 sspA stringent starva 99.6 4.7E-15 1E-19 134.8 8.4 77 254-333 9-85 (211)
47 cd03049 GST_N_3 GST_N family, 99.6 8.2E-15 1.8E-19 111.3 8.2 71 135-208 1-73 (73)
48 cd03046 GST_N_GTT1_like GST_N 99.6 1.4E-14 3.1E-19 110.2 9.0 75 135-212 1-76 (76)
49 cd03056 GST_N_4 GST_N family, 99.6 1E-14 2.2E-19 109.8 7.4 71 256-328 1-73 (73)
50 cd03060 GST_N_Omega_like GST_N 99.6 1.2E-14 2.7E-19 110.1 7.5 69 257-327 2-70 (71)
51 cd03051 GST_N_GTT2_like GST_N 99.5 1.3E-14 2.8E-19 109.2 7.2 72 256-328 1-74 (74)
52 cd03047 GST_N_2 GST_N family, 99.5 1.4E-14 3E-19 110.2 7.4 71 256-328 1-73 (73)
53 cd03061 GST_N_CLIC GST_N famil 99.5 2.1E-14 4.6E-19 115.4 8.6 70 262-334 20-89 (91)
54 cd03053 GST_N_Phi GST_N family 99.5 1.6E-14 3.6E-19 110.1 7.6 73 256-330 2-76 (76)
55 PRK15113 glutathione S-transfe 99.5 1.3E-14 2.9E-19 132.1 8.3 78 254-333 4-85 (214)
56 cd03042 GST_N_Zeta GST_N famil 99.5 2.8E-14 6E-19 107.6 8.3 71 135-208 1-73 (73)
57 KOG0867 Glutathione S-transfer 99.5 4.4E-14 9.6E-19 130.8 11.4 103 134-239 2-108 (226)
58 cd03057 GST_N_Beta GST_N famil 99.5 2.3E-14 5E-19 109.9 7.9 75 256-332 1-77 (77)
59 cd03037 GST_N_GRX2 GST_N famil 99.5 1.9E-14 4.2E-19 108.7 7.2 71 256-329 1-71 (71)
60 cd03040 GST_N_mPGES2 GST_N fam 99.5 1.5E-14 3.3E-19 110.9 6.5 75 255-332 1-77 (77)
61 cd03038 GST_N_etherase_LigE GS 99.5 2.5E-14 5.5E-19 111.8 7.9 70 141-212 14-84 (84)
62 PLN02378 glutathione S-transfe 99.5 4.2E-14 9.2E-19 129.1 10.1 88 139-232 16-103 (213)
63 cd00570 GST_N_family Glutathio 99.5 6.1E-14 1.3E-18 102.4 8.9 71 135-208 1-71 (71)
64 COG0625 Gst Glutathione S-tran 99.5 2.6E-14 5.6E-19 129.5 8.4 78 256-334 1-79 (211)
65 cd03044 GST_N_EF1Bgamma GST_N 99.5 3.8E-14 8.2E-19 108.6 7.7 72 257-329 2-74 (75)
66 PF13409 GST_N_2: Glutathione 99.5 3.8E-14 8.3E-19 107.7 7.4 67 263-330 1-70 (70)
67 PRK13972 GSH-dependent disulfi 99.5 3.6E-14 7.8E-19 129.1 8.5 78 255-333 1-85 (215)
68 PLN02473 glutathione S-transfe 99.5 4.1E-14 8.9E-19 128.1 8.4 77 255-333 2-80 (214)
69 cd03039 GST_N_Sigma_like GST_N 99.5 2E-14 4.3E-19 109.0 5.1 72 256-329 1-72 (72)
70 cd03046 GST_N_GTT1_like GST_N 99.5 7.6E-14 1.6E-18 106.2 7.5 74 256-332 1-76 (76)
71 cd03076 GST_N_Pi GST_N family, 99.5 3.3E-14 7.2E-19 108.6 5.5 72 256-330 2-73 (73)
72 cd03049 GST_N_3 GST_N family, 99.5 9.1E-14 2E-18 105.5 7.4 71 256-328 1-73 (73)
73 COG2999 GrxB Glutaredoxin 2 [P 99.5 2.7E-14 5.8E-19 126.3 5.0 105 135-246 1-107 (215)
74 cd03055 GST_N_Omega GST_N fami 99.5 1.3E-13 2.8E-18 109.5 8.3 74 253-328 16-89 (89)
75 cd03077 GST_N_Alpha GST_N fami 99.5 3E-13 6.5E-18 105.1 9.2 71 135-212 2-77 (79)
76 PLN02817 glutathione dehydroge 99.5 2.3E-13 5E-18 129.1 10.2 88 140-233 70-157 (265)
77 cd03042 GST_N_Zeta GST_N famil 99.5 1.8E-13 4E-18 103.1 7.4 71 256-328 1-73 (73)
78 cd03075 GST_N_Mu GST_N family, 99.5 2.3E-13 5.1E-18 106.7 8.0 74 136-211 2-82 (82)
79 TIGR00862 O-ClC intracellular 99.4 4.4E-13 9.5E-18 125.3 10.9 71 140-214 16-86 (236)
80 cd03043 GST_N_1 GST_N family, 99.4 4.1E-13 8.9E-18 102.8 8.8 67 140-208 7-73 (73)
81 PRK10387 glutaredoxin 2; Provi 99.4 1.9E-13 4E-18 123.2 7.7 75 256-333 1-75 (210)
82 cd03080 GST_N_Metaxin_like GST 99.4 2.2E-13 4.7E-18 104.5 6.9 68 255-332 1-75 (75)
83 cd03054 GST_N_Metaxin GST_N fa 99.4 4.9E-13 1.1E-17 101.4 8.4 65 135-210 1-72 (72)
84 PRK11752 putative S-transferas 99.4 2.7E-13 5.9E-18 128.1 8.3 80 253-333 42-131 (264)
85 cd03038 GST_N_etherase_LigE GS 99.4 3.1E-13 6.8E-18 105.6 6.4 69 262-332 14-84 (84)
86 PF02798 GST_N: Glutathione S- 99.4 9E-13 2E-17 101.7 7.3 71 256-329 3-76 (76)
87 PLN02378 glutathione S-transfe 99.4 9E-13 1.9E-17 120.3 8.4 71 260-333 16-86 (213)
88 PF02798 GST_N: Glutathione S- 99.4 2.1E-12 4.6E-17 99.6 8.8 71 135-209 3-76 (76)
89 KOG0868 Glutathione S-transfer 99.4 5.7E-13 1.2E-17 118.1 6.2 79 254-334 4-85 (217)
90 PLN02395 glutathione S-transfe 99.4 1.2E-12 2.7E-17 118.4 8.6 76 255-333 2-79 (215)
91 TIGR02182 GRXB Glutaredoxin, G 99.4 1.2E-12 2.5E-17 119.4 8.1 74 257-333 1-74 (209)
92 cd00570 GST_N_family Glutathio 99.4 1.6E-12 3.5E-17 94.8 7.3 71 256-328 1-71 (71)
93 cd03077 GST_N_Alpha GST_N fami 99.4 1.9E-12 4.2E-17 100.6 7.3 72 256-333 2-78 (79)
94 PTZ00057 glutathione s-transfe 99.3 4E-12 8.7E-17 115.1 10.1 75 134-213 4-85 (205)
95 cd03075 GST_N_Mu GST_N family, 99.3 1.9E-12 4E-17 101.5 6.6 73 257-331 2-82 (82)
96 PRK10542 glutathionine S-trans 99.3 1.9E-12 4.2E-17 115.8 7.3 76 256-333 1-79 (201)
97 TIGR00862 O-ClC intracellular 99.3 3.1E-12 6.8E-17 119.5 8.9 70 261-333 16-85 (236)
98 KOG0406 Glutathione S-transfer 99.3 2.8E-12 6.1E-17 118.8 8.4 77 254-333 8-85 (231)
99 KOG0867 Glutathione S-transfer 99.3 2.5E-12 5.4E-17 119.2 7.5 76 255-332 2-79 (226)
100 TIGR01262 maiA maleylacetoacet 99.3 3.7E-12 8E-17 114.7 7.9 75 257-333 1-78 (210)
101 PRK10357 putative glutathione 99.3 4.3E-12 9.3E-17 113.9 7.8 76 256-333 1-76 (202)
102 cd03043 GST_N_1 GST_N family, 99.3 7.8E-12 1.7E-16 95.6 7.8 66 261-328 7-73 (73)
103 TIGR02190 GlrX-dom Glutaredoxi 99.3 2.8E-11 6.1E-16 94.0 9.7 74 131-208 6-79 (79)
104 PLN02817 glutathione dehydroge 99.3 1.1E-11 2.3E-16 117.7 8.7 71 260-333 69-139 (265)
105 cd03054 GST_N_Metaxin GST_N fa 99.2 1.6E-11 3.4E-16 93.1 6.8 58 263-330 15-72 (72)
106 cd03029 GRX_hybridPRX5 Glutare 99.2 7.7E-11 1.7E-15 89.5 9.3 71 134-208 2-72 (72)
107 PTZ00057 glutathione s-transfe 99.2 3.7E-11 8E-16 108.8 7.2 74 255-333 4-85 (205)
108 cd03079 GST_N_Metaxin2 GST_N f 99.2 1.1E-10 2.3E-15 90.5 7.2 65 134-210 10-74 (74)
109 PRK10638 glutaredoxin 3; Provi 99.1 3.9E-10 8.4E-15 88.2 8.1 72 134-208 3-74 (83)
110 TIGR02190 GlrX-dom Glutaredoxi 99.0 1.8E-09 3.9E-14 83.8 7.7 74 252-328 6-79 (79)
111 cd02066 GRX_family Glutaredoxi 99.0 3.7E-09 8.1E-14 77.9 8.5 70 134-206 1-70 (72)
112 cd03027 GRX_DEP Glutaredoxin ( 98.9 2.9E-09 6.4E-14 81.1 7.6 69 134-205 2-70 (73)
113 cd03079 GST_N_Metaxin2 GST_N f 98.9 1.9E-09 4.2E-14 83.5 6.4 60 262-330 15-74 (74)
114 TIGR02196 GlrX_YruB Glutaredox 98.9 3.8E-09 8.2E-14 78.5 7.7 71 134-207 1-73 (74)
115 COG0695 GrxC Glutaredoxin and 98.9 6.2E-09 1.3E-13 81.6 8.2 74 134-209 2-76 (80)
116 KOG4420 Uncharacterized conser 98.9 1.4E-09 3.1E-14 101.6 5.2 83 129-214 21-105 (325)
117 cd03418 GRX_GRXb_1_3_like Glut 98.9 7.9E-09 1.7E-13 78.4 8.4 71 135-208 2-73 (75)
118 cd03029 GRX_hybridPRX5 Glutare 98.9 5.7E-09 1.2E-13 79.2 7.3 71 255-328 2-72 (72)
119 PRK10638 glutaredoxin 3; Provi 98.9 4.1E-09 8.9E-14 82.4 6.4 72 255-328 3-74 (83)
120 TIGR02183 GRXA Glutaredoxin, G 98.9 1.4E-08 3E-13 80.3 8.9 75 135-212 2-83 (86)
121 TIGR02200 GlrX_actino Glutared 98.8 2.8E-08 6E-13 75.2 8.2 73 134-208 1-76 (77)
122 PRK11200 grxA glutaredoxin 1; 98.8 3.2E-08 6.9E-13 77.6 8.5 76 134-212 2-84 (85)
123 KOG3029 Glutathione S-transfer 98.8 1.8E-08 3.8E-13 95.3 8.2 70 134-209 90-159 (370)
124 PHA03050 glutaredoxin; Provisi 98.8 3E-08 6.6E-13 82.1 8.6 72 133-206 13-89 (108)
125 COG2999 GrxB Glutaredoxin 2 [P 98.8 6.8E-09 1.5E-13 92.3 4.7 76 256-334 1-76 (215)
126 cd02976 NrdH NrdH-redoxin (Nrd 98.8 2.6E-08 5.5E-13 73.9 6.9 63 134-199 1-63 (73)
127 TIGR02196 GlrX_YruB Glutaredox 98.7 1.8E-08 3.8E-13 74.8 5.7 72 255-328 1-74 (74)
128 TIGR02189 GlrX-like_plant Glut 98.7 6.5E-08 1.4E-12 78.7 9.3 75 131-207 6-82 (99)
129 TIGR02181 GRX_bact Glutaredoxi 98.7 4.6E-08 1E-12 75.3 7.9 72 135-209 1-72 (79)
130 PLN02907 glutamate-tRNA ligase 98.7 4.7E-08 1E-12 104.4 10.5 85 135-235 3-87 (722)
131 PRK10329 glutaredoxin-like pro 98.7 6.2E-08 1.3E-12 76.0 8.2 73 134-208 2-74 (81)
132 cd03419 GRX_GRXh_1_2_like Glut 98.7 6.6E-08 1.4E-12 74.3 8.3 74 134-209 1-76 (82)
133 TIGR00365 monothiol glutaredox 98.7 7.3E-08 1.6E-12 78.1 8.7 75 131-208 10-89 (97)
134 KOG4420 Uncharacterized conser 98.7 8.4E-09 1.8E-13 96.5 3.4 78 254-333 25-104 (325)
135 KOG1695 Glutathione S-transfer 98.7 7.7E-08 1.7E-12 88.3 9.6 93 134-234 3-96 (206)
136 cd03027 GRX_DEP Glutaredoxin ( 98.7 3.8E-08 8.2E-13 74.9 6.1 68 255-324 2-69 (73)
137 cd03078 GST_N_Metaxin1_like GS 98.7 1.1E-07 2.4E-12 73.2 8.2 58 142-210 15-72 (73)
138 cd03028 GRX_PICOT_like Glutare 98.7 1.3E-07 2.8E-12 75.4 8.7 73 132-207 7-84 (90)
139 PRK10329 glutaredoxin-like pro 98.7 5.7E-08 1.2E-12 76.2 6.5 75 255-330 2-76 (81)
140 PF00462 Glutaredoxin: Glutare 98.7 3.9E-08 8.4E-13 72.0 5.2 60 135-197 1-60 (60)
141 TIGR02194 GlrX_NrdH Glutaredox 98.6 7.1E-08 1.5E-12 73.4 6.5 54 135-190 1-54 (72)
142 cd02976 NrdH NrdH-redoxin (Nrd 98.6 4.7E-08 1E-12 72.5 5.3 70 256-325 2-71 (73)
143 cd02066 GRX_family Glutaredoxi 98.6 7.3E-08 1.6E-12 70.9 6.3 70 255-326 1-70 (72)
144 TIGR02180 GRX_euk Glutaredoxin 98.6 3.6E-07 7.8E-12 70.3 8.7 73 135-209 1-77 (84)
145 cd03418 GRX_GRXb_1_3_like Glut 98.5 1.9E-07 4.2E-12 70.7 6.3 71 256-328 2-73 (75)
146 TIGR02194 GlrX_NrdH Glutaredox 98.5 1.6E-07 3.6E-12 71.3 5.8 69 256-325 1-70 (72)
147 PRK11200 grxA glutaredoxin 1; 98.5 3.2E-07 7E-12 71.9 7.2 76 255-332 2-84 (85)
148 TIGR02183 GRXA Glutaredoxin, G 98.5 3.5E-07 7.7E-12 72.2 7.0 76 256-333 2-84 (86)
149 TIGR02200 GlrX_actino Glutared 98.5 3.3E-07 7.2E-12 69.2 6.2 72 256-328 2-76 (77)
150 TIGR02181 GRX_bact Glutaredoxi 98.4 4.2E-07 9.1E-12 69.9 6.1 72 256-329 1-72 (79)
151 KOG1422 Intracellular Cl- chan 98.4 1.2E-06 2.6E-11 79.9 9.3 74 141-218 19-92 (221)
152 COG0695 GrxC Glutaredoxin and 98.4 6.8E-07 1.5E-11 70.0 6.0 70 255-326 2-73 (80)
153 PTZ00062 glutaredoxin; Provisi 98.3 1.4E-05 2.9E-10 73.5 14.0 156 135-327 21-189 (204)
154 PRK10824 glutaredoxin-4; Provi 98.3 3.1E-06 6.6E-11 71.0 8.3 74 132-208 14-92 (115)
155 PHA03050 glutaredoxin; Provisi 98.2 2E-06 4.3E-11 71.2 5.9 74 251-326 10-89 (108)
156 PF00462 Glutaredoxin: Glutare 98.2 1E-06 2.2E-11 64.4 3.5 56 256-311 1-56 (60)
157 KOG1422 Intracellular Cl- chan 98.2 5.6E-06 1.2E-10 75.6 8.2 72 261-335 18-89 (221)
158 TIGR00365 monothiol glutaredox 98.2 3.7E-06 7.9E-11 68.1 6.3 74 252-327 10-88 (97)
159 KOG1695 Glutathione S-transfer 98.2 2.9E-06 6.3E-11 77.9 6.3 76 255-333 3-78 (206)
160 cd03078 GST_N_Metaxin1_like GS 98.2 5.1E-06 1.1E-10 63.9 6.6 58 263-330 15-72 (73)
161 cd03028 GRX_PICOT_like Glutare 98.2 4.3E-06 9.4E-11 66.5 6.4 75 252-328 6-85 (90)
162 TIGR02189 GlrX-like_plant Glut 98.2 6.1E-06 1.3E-10 67.1 7.4 75 251-327 5-82 (99)
163 KOG3029 Glutathione S-transfer 98.2 2.9E-06 6.4E-11 80.5 6.2 70 254-328 89-158 (370)
164 cd03419 GRX_GRXh_1_2_like Glut 98.1 8.7E-06 1.9E-10 62.4 7.3 72 256-329 2-76 (82)
165 PTZ00062 glutaredoxin; Provisi 98.0 3.1E-05 6.7E-10 71.1 8.7 72 132-206 112-188 (204)
166 KOG1752 Glutaredoxin and relat 98.0 5.5E-05 1.2E-09 62.4 9.3 75 131-207 12-88 (104)
167 KOG4244 Failed axon connection 98.0 2.7E-05 5.8E-10 73.5 8.1 72 133-215 44-122 (281)
168 PRK12759 bifunctional gluaredo 97.9 4.2E-05 9.2E-10 77.1 8.8 70 133-205 2-79 (410)
169 TIGR02180 GRX_euk Glutaredoxin 97.9 6.7E-05 1.4E-09 57.5 7.4 72 256-329 1-77 (84)
170 cd03031 GRX_GRX_like Glutaredo 97.8 0.0001 2.2E-09 64.4 8.5 69 135-206 2-80 (147)
171 PLN02907 glutamate-tRNA ligase 97.7 4.8E-05 1E-09 81.6 6.5 63 256-333 3-65 (722)
172 cd03036 ArsC_like Arsenate Red 97.6 8.9E-05 1.9E-09 61.4 4.8 46 135-181 1-46 (111)
173 cd02973 TRX_GRX_like Thioredox 97.6 0.00025 5.4E-09 52.4 6.6 59 134-199 2-65 (67)
174 PRK10824 glutaredoxin-4; Provi 97.5 0.00018 3.9E-09 60.4 5.8 73 253-327 14-91 (115)
175 PRK01655 spxA transcriptional 97.4 0.00027 5.9E-09 60.4 5.9 36 134-169 1-36 (131)
176 cd03032 ArsC_Spx Arsenate Redu 97.4 0.0004 8.7E-09 57.7 6.1 35 134-168 1-35 (115)
177 cd02977 ArsC_family Arsenate R 97.3 0.00047 1E-08 56.1 6.0 45 135-180 1-45 (105)
178 cd03031 GRX_GRX_like Glutaredo 97.2 0.00081 1.7E-08 58.8 6.3 69 256-326 2-80 (147)
179 PRK12559 transcriptional regul 97.1 0.0012 2.6E-08 56.5 6.3 42 134-176 1-42 (131)
180 PRK12759 bifunctional gluaredo 97.1 0.0011 2.4E-08 66.9 6.7 68 254-324 2-78 (410)
181 PRK13344 spxA transcriptional 97.1 0.0015 3.2E-08 56.0 6.4 36 134-169 1-36 (132)
182 cd03036 ArsC_like Arsenate Red 97.0 0.00056 1.2E-08 56.6 3.5 51 256-306 1-51 (111)
183 TIGR01617 arsC_related transcr 97.0 0.0013 2.8E-08 54.8 5.5 34 135-168 1-34 (117)
184 PF10568 Tom37: Outer mitochon 96.9 0.0052 1.1E-07 47.3 7.3 56 142-207 13-71 (72)
185 PRK01655 spxA transcriptional 96.8 0.0015 3.2E-08 55.9 4.0 36 255-290 1-36 (131)
186 cd03032 ArsC_Spx Arsenate Redu 96.7 0.002 4.4E-08 53.5 4.3 36 255-290 1-36 (115)
187 cd03035 ArsC_Yffb Arsenate Red 96.6 0.0048 1E-07 50.7 6.0 43 135-178 1-43 (105)
188 TIGR02187 GlrX_arch Glutaredox 96.6 0.21 4.5E-06 45.7 17.4 169 133-328 21-213 (215)
189 cd02977 ArsC_family Arsenate R 96.6 0.0028 6E-08 51.5 4.4 47 256-302 1-47 (105)
190 KOG4244 Failed axon connection 96.5 0.0036 7.7E-08 59.4 5.1 62 263-334 60-121 (281)
191 COG4545 Glutaredoxin-related p 96.5 0.0096 2.1E-07 46.3 6.4 62 135-198 4-77 (85)
192 KOG1752 Glutaredoxin and relat 96.4 0.014 2.9E-07 48.2 7.4 74 251-326 11-87 (104)
193 TIGR00412 redox_disulf_2 small 96.4 0.018 3.9E-07 44.2 7.3 55 135-198 3-61 (76)
194 cd03033 ArsC_15kD Arsenate Red 96.3 0.0065 1.4E-07 50.7 5.1 43 135-178 2-44 (113)
195 PF10568 Tom37: Outer mitochon 96.3 0.014 3E-07 45.0 6.4 57 263-328 13-72 (72)
196 PRK12559 transcriptional regul 96.3 0.0054 1.2E-07 52.5 4.4 36 255-290 1-36 (131)
197 PRK13344 spxA transcriptional 96.3 0.0061 1.3E-07 52.2 4.7 36 255-290 1-36 (132)
198 TIGR01617 arsC_related transcr 96.2 0.0058 1.3E-07 50.8 4.0 48 256-303 1-51 (117)
199 cd02973 TRX_GRX_like Thioredox 96.0 0.015 3.2E-07 42.8 5.2 52 256-311 3-59 (67)
200 COG1393 ArsC Arsenate reductas 95.9 0.021 4.6E-07 48.0 6.2 44 134-178 2-45 (117)
201 PRK10853 putative reductase; P 95.9 0.013 2.8E-07 49.3 4.8 44 134-178 1-44 (118)
202 TIGR01616 nitro_assoc nitrogen 95.8 0.016 3.5E-07 49.3 5.1 36 134-169 2-37 (126)
203 TIGR00411 redox_disulf_1 small 95.8 0.098 2.1E-06 39.5 9.1 54 134-190 2-59 (82)
204 cd01659 TRX_superfamily Thiore 95.6 0.037 8E-07 37.5 5.5 55 135-191 1-60 (69)
205 cd03030 GRX_SH3BGR Glutaredoxi 95.6 0.09 1.9E-06 42.3 8.4 69 135-206 2-80 (92)
206 PRK10026 arsenate reductase; P 95.6 0.023 5.1E-07 49.3 5.2 45 133-178 2-46 (141)
207 cd03035 ArsC_Yffb Arsenate Red 95.4 0.022 4.8E-07 46.7 4.5 39 256-294 1-39 (105)
208 PF05768 DUF836: Glutaredoxin- 95.4 0.076 1.6E-06 41.2 7.2 52 134-191 1-56 (81)
209 COG1393 ArsC Arsenate reductas 95.3 0.024 5.2E-07 47.7 4.4 39 254-292 1-39 (117)
210 cd03033 ArsC_15kD Arsenate Red 95.2 0.027 5.9E-07 46.9 4.2 37 256-292 2-38 (113)
211 cd03026 AhpF_NTD_C TRX-GRX-lik 95.1 0.072 1.6E-06 42.3 6.4 58 134-198 15-77 (89)
212 cd03034 ArsC_ArsC Arsenate Red 95.0 0.045 9.8E-07 45.3 5.1 35 135-169 1-35 (112)
213 cd03030 GRX_SH3BGR Glutaredoxi 95.0 0.073 1.6E-06 42.8 6.1 59 266-326 18-80 (92)
214 PRK10026 arsenate reductase; P 95.0 0.035 7.7E-07 48.2 4.5 36 254-289 2-37 (141)
215 PRK10853 putative reductase; P 94.9 0.036 7.7E-07 46.6 4.2 38 255-292 1-38 (118)
216 TIGR00014 arsC arsenate reduct 94.9 0.05 1.1E-06 45.2 5.0 35 135-169 1-35 (114)
217 COG0278 Glutaredoxin-related p 94.6 0.16 3.4E-06 41.7 7.0 73 132-207 14-92 (105)
218 PHA02125 thioredoxin-like prot 94.4 0.16 3.5E-06 38.6 6.4 52 134-190 1-52 (75)
219 TIGR01616 nitro_assoc nitrogen 94.1 0.072 1.6E-06 45.3 4.4 35 255-289 2-36 (126)
220 PF13192 Thioredoxin_3: Thiore 94.0 0.37 8.1E-06 36.7 7.8 56 135-199 3-62 (76)
221 PF11287 DUF3088: Protein of u 93.5 0.3 6.4E-06 40.8 6.7 70 142-214 23-110 (112)
222 cd03034 ArsC_ArsC Arsenate Red 93.3 0.13 2.9E-06 42.5 4.5 35 256-290 1-35 (112)
223 COG4545 Glutaredoxin-related p 93.3 0.19 4.1E-06 39.2 4.9 61 257-317 5-77 (85)
224 TIGR00014 arsC arsenate reduct 92.9 0.16 3.6E-06 42.1 4.4 46 256-301 1-49 (114)
225 KOG3027 Mitochondrial outer me 92.6 0.35 7.6E-06 44.7 6.5 85 135-234 29-114 (257)
226 PF05768 DUF836: Glutaredoxin- 92.6 0.34 7.4E-06 37.5 5.7 52 256-312 2-57 (81)
227 COG0278 Glutaredoxin-related p 92.1 0.33 7.1E-06 39.9 5.1 65 261-327 27-92 (105)
228 cd01659 TRX_superfamily Thiore 92.0 0.31 6.7E-06 32.7 4.3 56 257-313 2-62 (69)
229 PF03960 ArsC: ArsC family; I 91.5 0.41 8.9E-06 39.2 5.2 31 138-168 1-31 (110)
230 TIGR00412 redox_disulf_2 small 91.4 0.64 1.4E-05 35.4 5.9 49 256-310 3-55 (76)
231 PF11287 DUF3088: Protein of u 90.9 0.67 1.4E-05 38.7 5.8 71 263-336 23-112 (112)
232 TIGR01295 PedC_BrcD bacterioci 90.8 1.3 2.8E-05 37.1 7.7 64 133-196 25-102 (122)
233 TIGR00411 redox_disulf_1 small 90.4 1.3 2.9E-05 33.1 6.9 73 255-329 2-80 (82)
234 PF09635 MetRS-N: MetRS-N bind 90.4 0.18 3.8E-06 42.8 2.1 34 301-334 32-65 (122)
235 PHA02125 thioredoxin-like prot 89.7 0.89 1.9E-05 34.4 5.3 53 255-311 1-53 (75)
236 KOG2903 Predicted glutathione 89.7 3.3 7.1E-05 39.8 10.0 79 133-211 36-151 (319)
237 cd02947 TRX_family TRX family; 89.4 2.1 4.5E-05 31.6 7.2 57 134-195 13-74 (93)
238 PF03960 ArsC: ArsC family; I 87.9 0.8 1.7E-05 37.4 4.2 44 259-302 1-47 (110)
239 KOG0911 Glutaredoxin-related p 87.1 1.2 2.5E-05 41.7 5.2 72 133-207 139-215 (227)
240 PF00085 Thioredoxin: Thioredo 86.8 7.3 0.00016 29.9 9.1 73 134-209 20-102 (103)
241 cd02975 PfPDO_like_N Pyrococcu 86.6 0.64 1.4E-05 38.2 2.9 52 134-190 24-81 (113)
242 PF13192 Thioredoxin_3: Thiore 86.0 3.1 6.8E-05 31.5 6.4 56 256-319 3-62 (76)
243 cd03026 AhpF_NTD_C TRX-GRX-lik 85.1 1.9 4.1E-05 34.1 4.9 52 255-310 15-71 (89)
244 cd02949 TRX_NTR TRX domain, no 85.1 4.7 0.0001 31.6 7.2 61 134-197 16-80 (97)
245 PF09635 MetRS-N: MetRS-N bind 84.2 0.54 1.2E-05 39.9 1.4 34 180-213 31-64 (122)
246 cd02951 SoxW SoxW family; SoxW 83.4 5.9 0.00013 32.4 7.4 19 133-151 16-34 (125)
247 TIGR02187 GlrX_arch Glutaredox 83.4 1.9 4E-05 39.4 4.7 59 134-195 136-197 (215)
248 TIGR03143 AhpF_homolog putativ 83.0 3 6.6E-05 43.6 6.7 59 134-199 479-542 (555)
249 COG0435 ECM4 Predicted glutath 82.4 8.7 0.00019 37.3 8.8 100 133-234 50-183 (324)
250 KOG3028 Translocase of outer m 81.7 12 0.00026 36.6 9.7 58 142-209 16-73 (313)
251 PRK15317 alkyl hydroperoxide r 79.7 1.4 3E-05 45.7 2.8 73 133-212 118-199 (517)
252 TIGR03140 AhpF alkyl hydropero 79.6 1.2 2.6E-05 46.2 2.3 70 134-210 120-198 (515)
253 TIGR01068 thioredoxin thioredo 79.0 16 0.00034 27.8 8.1 58 135-195 18-79 (101)
254 PTZ00051 thioredoxin; Provisio 78.1 13 0.00028 28.7 7.3 58 134-196 21-83 (98)
255 PF04908 SH3BGR: SH3-binding, 77.7 11 0.00024 30.8 6.9 69 135-206 3-86 (99)
256 cd02955 SSP411 TRX domain, SSP 76.3 10 0.00022 31.9 6.7 65 135-200 19-97 (124)
257 TIGR03143 AhpF_homolog putativ 76.3 40 0.00087 35.3 12.5 53 255-311 479-536 (555)
258 PRK10877 protein disulfide iso 75.8 5.7 0.00012 37.0 5.5 26 131-156 107-132 (232)
259 cd02953 DsbDgamma DsbD gamma f 75.6 6.1 0.00013 31.2 4.9 56 134-190 14-78 (104)
260 cd02959 ERp19 Endoplasmic reti 75.1 9.1 0.0002 31.6 6.0 60 134-196 22-89 (117)
261 cd02984 TRX_PICOT TRX domain, 74.9 4.7 0.0001 31.1 4.0 60 134-196 17-80 (97)
262 cd02997 PDI_a_PDIR PDIa family 74.2 18 0.0004 27.9 7.3 62 133-195 19-86 (104)
263 PRK09381 trxA thioredoxin; Pro 73.9 30 0.00066 27.3 8.7 60 135-197 25-88 (109)
264 KOG0911 Glutaredoxin-related p 73.9 5.9 0.00013 37.1 4.9 65 261-327 151-215 (227)
265 cd02996 PDI_a_ERp44 PDIa famil 73.7 17 0.00038 28.8 7.2 57 134-195 21-89 (108)
266 cd03020 DsbA_DsbC_DsbG DsbA fa 73.0 7.7 0.00017 34.7 5.4 25 131-155 77-101 (197)
267 cd02963 TRX_DnaJ TRX domain, D 73.0 24 0.00053 28.4 8.0 58 134-196 27-91 (111)
268 PRK11657 dsbG disulfide isomer 72.7 8.7 0.00019 36.2 5.9 25 131-155 117-141 (251)
269 PRK10996 thioredoxin 2; Provis 71.2 43 0.00093 28.3 9.4 61 134-197 55-119 (139)
270 cd02950 TxlA TRX-like protein 71.1 50 0.0011 28.1 9.8 76 135-213 24-112 (142)
271 COG3011 Predicted thiol-disulf 70.2 35 0.00075 29.6 8.5 76 133-211 9-87 (137)
272 PF13098 Thioredoxin_2: Thiore 69.4 4.4 9.6E-05 32.2 2.7 23 132-154 6-28 (112)
273 PHA02278 thioredoxin-like prot 68.6 29 0.00063 28.1 7.4 62 135-197 18-85 (103)
274 KOG2501 Thioredoxin, nucleored 68.1 11 0.00024 33.5 5.1 37 133-169 34-78 (157)
275 cd02989 Phd_like_TxnDC9 Phosdu 68.1 5.9 0.00013 32.4 3.3 62 134-198 25-89 (113)
276 PHA03075 glutaredoxin-like pro 65.1 8 0.00017 32.7 3.4 50 133-190 3-52 (123)
277 PF04134 DUF393: Protein of un 64.8 32 0.00069 27.7 7.0 68 138-210 2-77 (114)
278 PF04908 SH3BGR: SH3-binding, 63.9 17 0.00036 29.7 5.1 59 266-326 19-86 (99)
279 cd02948 TRX_NDPK TRX domain, T 62.5 53 0.0011 25.9 7.8 59 134-196 20-83 (102)
280 KOG3027 Mitochondrial outer me 61.6 19 0.00041 33.6 5.5 58 264-330 34-91 (257)
281 cd02993 PDI_a_APS_reductase PD 61.4 27 0.00059 27.9 6.0 54 133-189 23-83 (109)
282 PRK13728 conjugal transfer pro 60.3 45 0.00098 30.2 7.7 32 135-166 73-108 (181)
283 cd02954 DIM1 Dim1 family; Dim1 60.1 31 0.00067 28.8 6.1 60 135-197 18-81 (114)
284 cd02972 DsbA_family DsbA famil 59.9 12 0.00026 27.9 3.5 32 135-166 1-38 (98)
285 cd02985 TRX_CDSP32 TRX family, 59.4 32 0.0007 27.3 6.0 62 135-197 19-84 (103)
286 cd03023 DsbA_Com1_like DsbA fa 58.1 13 0.00029 30.7 3.7 24 132-155 6-29 (154)
287 cd02994 PDI_a_TMX PDIa family, 58.1 85 0.0018 24.2 8.6 58 134-194 19-81 (101)
288 cd02947 TRX_family TRX family; 58.1 28 0.0006 25.4 5.2 51 256-310 14-69 (93)
289 TIGR01295 PedC_BrcD bacterioci 57.5 23 0.00051 29.4 5.1 60 255-314 26-100 (122)
290 cd02952 TRP14_like Human TRX-r 57.2 51 0.0011 27.6 7.0 59 141-200 38-106 (119)
291 cd02961 PDI_a_family Protein D 57.1 14 0.00031 27.7 3.5 54 133-189 17-76 (101)
292 PRK03147 thiol-disulfide oxido 57.0 75 0.0016 27.0 8.4 20 134-153 64-83 (173)
293 cd02975 PfPDO_like_N Pyrococcu 56.8 21 0.00046 29.1 4.7 51 256-310 25-81 (113)
294 TIGR01126 pdi_dom protein disu 56.7 10 0.00023 29.0 2.7 52 134-188 16-73 (102)
295 cd03002 PDI_a_MPD1_like PDI fa 56.4 47 0.001 25.9 6.5 53 134-189 21-79 (109)
296 PF13728 TraF: F plasmid trans 55.7 56 0.0012 30.1 7.7 60 134-194 123-195 (215)
297 cd02970 PRX_like2 Peroxiredoxi 55.2 32 0.00069 28.3 5.6 58 133-191 24-88 (149)
298 COG0435 ECM4 Predicted glutath 52.6 22 0.00048 34.5 4.5 78 255-332 51-158 (324)
299 cd03004 PDI_a_ERdj5_C PDIa fam 52.5 56 0.0012 25.4 6.4 52 134-190 22-79 (104)
300 COG1225 Bcp Peroxiredoxin [Pos 51.3 39 0.00085 29.9 5.6 69 133-214 31-106 (157)
301 PF01323 DSBA: DSBA-like thior 51.2 25 0.00054 30.5 4.5 34 135-168 2-40 (193)
302 PF08534 Redoxin: Redoxin; In 51.0 35 0.00075 28.4 5.2 47 142-191 40-93 (146)
303 PTZ00443 Thioredoxin domain-co 51.0 47 0.001 30.9 6.5 78 134-214 55-142 (224)
304 TIGR02661 MauD methylamine deh 50.3 77 0.0017 28.2 7.6 30 135-164 78-111 (189)
305 cd02956 ybbN ybbN protein fami 49.8 40 0.00088 25.7 5.0 58 135-195 16-77 (96)
306 cd02957 Phd_like Phosducin (Ph 49.7 18 0.0004 29.2 3.1 60 135-198 28-90 (113)
307 cd03003 PDI_a_ERdj5_N PDIa fam 49.1 65 0.0014 25.0 6.2 53 134-189 21-77 (101)
308 cd03000 PDI_a_TMX3 PDIa family 49.0 12 0.00026 29.5 1.9 54 134-190 18-78 (104)
309 KOG3425 Uncharacterized conser 48.7 37 0.00081 29.0 4.8 69 141-209 43-121 (128)
310 PRK15317 alkyl hydroperoxide r 48.6 26 0.00056 36.3 4.7 73 255-331 119-198 (517)
311 TIGR02740 TraF-like TraF-like 47.8 82 0.0018 30.1 7.7 60 135-195 170-242 (271)
312 PF00578 AhpC-TSA: AhpC/TSA fa 47.4 39 0.00083 26.9 4.7 57 133-191 26-90 (124)
313 cd03005 PDI_a_ERp46 PDIa famil 47.1 64 0.0014 24.7 5.8 53 134-189 19-78 (102)
314 TIGR02738 TrbB type-F conjugat 46.6 1.2E+02 0.0025 26.4 7.9 33 134-166 53-89 (153)
315 KOG2824 Glutaredoxin-related p 46.3 36 0.00077 32.9 4.9 75 129-206 127-211 (281)
316 cd02971 PRX_family Peroxiredox 46.0 42 0.00092 27.4 4.9 58 133-191 23-88 (140)
317 cd03008 TryX_like_RdCVF Trypar 45.8 84 0.0018 27.3 6.8 23 133-155 26-49 (146)
318 PF06110 DUF953: Eukaryotic pr 45.7 60 0.0013 27.3 5.7 60 142-202 37-107 (119)
319 cd03019 DsbA_DsbA DsbA family, 45.7 27 0.00057 29.9 3.7 24 132-155 16-39 (178)
320 COG2143 Thioredoxin-related pr 45.3 1E+02 0.0022 27.7 7.2 81 130-211 41-152 (182)
321 TIGR03140 AhpF alkyl hydropero 44.6 34 0.00073 35.5 4.9 73 255-330 120-198 (515)
322 PF13462 Thioredoxin_4: Thiore 44.1 25 0.00053 29.5 3.2 24 131-154 12-35 (162)
323 cd03009 TryX_like_TryX_NRX Try 43.8 64 0.0014 26.3 5.6 20 135-154 22-41 (131)
324 cd02967 mauD Methylamine utili 43.3 33 0.00072 27.0 3.7 54 136-190 26-84 (114)
325 cd02998 PDI_a_ERp38 PDIa famil 43.2 29 0.00063 26.6 3.3 54 134-189 21-80 (105)
326 KOG3028 Translocase of outer m 43.2 62 0.0013 31.8 6.1 58 263-329 16-73 (313)
327 cd02995 PDI_a_PDI_a'_C PDIa fa 42.6 24 0.00053 27.1 2.8 23 134-156 21-43 (104)
328 cd03006 PDI_a_EFP1_N PDIa fami 42.1 74 0.0016 26.2 5.7 55 134-190 32-90 (113)
329 cd02999 PDI_a_ERp44_like PDIa 41.5 23 0.00049 28.2 2.4 54 134-189 21-77 (100)
330 cd02962 TMX2 TMX2 family; comp 40.9 53 0.0011 28.7 4.8 62 135-198 51-122 (152)
331 cd02949 TRX_NTR TRX domain, no 40.7 83 0.0018 24.3 5.6 51 255-309 16-72 (97)
332 PRK15412 thiol:disulfide inter 40.6 70 0.0015 28.3 5.7 19 138-156 75-93 (185)
333 cd03001 PDI_a_P5 PDIa family, 40.6 1.1E+02 0.0023 23.4 6.2 52 135-189 22-77 (103)
334 cd02953 DsbDgamma DsbD gamma f 39.8 45 0.00097 26.1 3.9 55 255-309 14-77 (104)
335 cd02958 UAS UAS family; UAS is 39.7 1.2E+02 0.0025 24.3 6.5 63 133-196 18-90 (114)
336 PLN02309 5'-adenylylsulfate re 39.4 1.8E+02 0.004 30.1 9.2 56 134-190 368-428 (457)
337 cd03022 DsbA_HCCA_Iso DsbA fam 38.4 44 0.00095 29.0 4.0 32 135-166 1-36 (192)
338 TIGR00385 dsbE periplasmic pro 38.2 88 0.0019 27.2 5.9 22 135-156 67-88 (173)
339 smart00594 UAS UAS domain. 37.5 1.3E+02 0.0028 24.7 6.5 62 133-195 29-99 (122)
340 TIGR02739 TraF type-F conjugat 37.2 1.5E+02 0.0033 28.3 7.6 60 134-194 153-225 (256)
341 cd02987 Phd_like_Phd Phosducin 36.7 44 0.00095 29.7 3.7 61 134-198 85-149 (175)
342 TIGR01130 ER_PDI_fam protein d 36.6 2.6E+02 0.0056 27.6 9.7 75 134-213 21-111 (462)
343 cd02966 TlpA_like_family TlpA- 36.2 67 0.0014 24.3 4.4 23 134-156 22-44 (116)
344 cd03021 DsbA_GSTK DsbA family, 36.1 57 0.0012 29.4 4.5 34 134-167 2-39 (209)
345 PF13728 TraF: F plasmid trans 35.7 1.1E+02 0.0025 28.1 6.4 58 256-313 124-194 (215)
346 cd03017 PRX_BCP Peroxiredoxin 34.8 88 0.0019 25.5 5.1 57 133-191 24-88 (140)
347 PF00085 Thioredoxin: Thioredo 33.5 40 0.00086 25.6 2.6 74 255-330 20-103 (103)
348 PTZ00102 disulphide isomerase; 32.4 2.5E+02 0.0054 28.2 8.8 78 133-213 51-140 (477)
349 KOG2903 Predicted glutathione 32.3 84 0.0018 30.4 4.9 75 255-329 37-149 (319)
350 cd03024 DsbA_FrnE DsbA family, 32.1 52 0.0011 28.9 3.5 32 135-166 1-40 (201)
351 cd05564 PTS_IIB_chitobiose_lic 31.4 82 0.0018 25.1 4.2 65 264-328 13-95 (96)
352 cd03011 TlpA_like_ScsD_MtbDsbE 31.3 1.2E+02 0.0025 24.2 5.2 56 134-191 23-81 (123)
353 cd03010 TlpA_like_DsbE TlpA-li 30.5 1.4E+02 0.003 24.1 5.5 22 135-156 29-50 (127)
354 PRK00293 dipZ thiol:disulfide 29.2 2.5E+02 0.0055 29.7 8.5 53 135-189 478-539 (571)
355 PRK13703 conjugal pilus assemb 28.6 2.5E+02 0.0055 26.7 7.6 61 133-194 145-218 (248)
356 COG2761 FrnE Predicted dithiol 28.5 96 0.0021 29.1 4.6 27 134-160 7-37 (225)
357 cd02992 PDI_a_QSOX PDIa family 28.4 1.4E+02 0.003 24.2 5.2 54 134-190 22-84 (114)
358 cd03018 PRX_AhpE_like Peroxire 28.2 1.1E+02 0.0024 25.2 4.7 57 133-191 29-93 (149)
359 PRK00522 tpx lipid hydroperoxi 27.8 1.2E+02 0.0026 26.3 5.0 57 133-191 45-108 (167)
360 cd03013 PRX5_like Peroxiredoxi 27.6 1.4E+02 0.003 25.7 5.3 57 133-191 30-98 (155)
361 PRK09437 bcp thioredoxin-depen 27.3 1.6E+02 0.0035 24.7 5.6 55 133-191 31-95 (154)
362 TIGR01626 ytfJ_HI0045 conserve 27.0 1.9E+02 0.004 26.2 6.1 54 137-191 65-133 (184)
363 PF04134 DUF393: Protein of un 26.7 2.5E+02 0.0055 22.3 6.4 66 260-329 3-76 (114)
364 PF14595 Thioredoxin_9: Thiore 26.4 21 0.00046 30.2 -0.1 55 134-190 44-103 (129)
365 cd03025 DsbA_FrnE_like DsbA fa 26.4 1E+02 0.0022 26.7 4.3 32 134-165 2-39 (193)
366 PF00731 AIRC: AIR carboxylase 25.2 1.2E+02 0.0026 26.7 4.4 31 143-175 13-43 (150)
367 cd02965 HyaE HyaE family; HyaE 25.1 77 0.0017 26.4 3.0 64 133-199 29-98 (111)
368 cd02964 TryX_like_family Trypa 24.7 1E+02 0.0022 25.3 3.7 19 136-154 22-40 (132)
369 PF14595 Thioredoxin_9: Thiore 24.6 19 0.00041 30.5 -0.7 55 255-310 44-103 (129)
370 PRK10382 alkyl hydroperoxide r 24.2 1.5E+02 0.0033 26.5 5.1 59 133-191 32-100 (187)
371 cd02959 ERp19 Endoplasmic reti 24.0 1.5E+02 0.0032 24.3 4.6 52 256-309 23-81 (117)
372 TIGR03137 AhpC peroxiredoxin. 23.7 1.3E+02 0.0027 26.7 4.4 18 133-150 32-51 (187)
373 PRK09266 hypothetical protein; 23.2 1.2E+02 0.0026 28.3 4.4 66 147-214 195-261 (266)
374 PF11823 DUF3343: Protein of u 22.9 1.3E+02 0.0028 22.6 3.7 31 137-167 5-35 (73)
375 TIGR01068 thioredoxin thioredo 22.5 1.4E+02 0.0031 22.3 4.0 70 259-330 21-100 (101)
376 PF06053 DUF929: Domain of unk 22.4 64 0.0014 30.8 2.3 23 134-156 61-83 (249)
377 TIGR01162 purE phosphoribosyla 22.2 1.6E+02 0.0035 26.1 4.7 31 144-176 12-42 (156)
378 COG0320 LipA Lipoate synthase 22.1 1.3E+02 0.0028 29.3 4.3 44 147-190 103-156 (306)
379 cd03015 PRX_Typ2cys Peroxiredo 21.9 1.8E+02 0.0038 25.2 4.9 21 133-153 30-52 (173)
380 KOG2824 Glutaredoxin-related p 21.6 1.4E+02 0.0031 28.9 4.5 59 266-326 149-211 (281)
381 TIGR02739 TraF type-F conjugat 21.6 2.6E+02 0.0056 26.7 6.3 59 256-314 154-225 (256)
382 TIGR00424 APS_reduc 5'-adenyly 21.6 3.5E+02 0.0075 28.2 7.6 52 135-189 375-433 (463)
383 COG0041 PurE Phosphoribosylcar 21.3 1.7E+02 0.0037 26.1 4.5 33 144-178 16-48 (162)
384 PTZ00056 glutathione peroxidas 20.9 2.1E+02 0.0047 25.7 5.4 73 136-212 44-130 (199)
385 cd02969 PRX_like1 Peroxiredoxi 20.6 2.4E+02 0.0052 24.1 5.5 23 134-156 28-50 (171)
386 KOG0190 Protein disulfide isom 20.4 4.1E+02 0.0088 28.0 7.8 79 134-215 45-136 (493)
387 cd03012 TlpA_like_DipZ_like Tl 20.3 2.5E+02 0.0055 22.6 5.3 52 138-191 30-93 (126)
388 cd03014 PRX_Atyp2cys Peroxired 20.0 1.9E+02 0.0041 23.8 4.5 58 133-191 27-90 (143)
No 1
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.80 E-value=1.4e-19 Score=139.79 Aligned_cols=77 Identities=58% Similarity=1.108 Sum_probs=67.9
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhh
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y 211 (338)
|++||+++.||||+||+++|+++||+|+.++++.++... +.+.++||.++||+|++.++|..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~-~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKR-DKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHH-HHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 589999999999999999999999999999997654333 44558999999999998656899999999999999986
No 2
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.78 E-value=4.6e-19 Score=136.98 Aligned_cols=77 Identities=43% Similarity=0.785 Sum_probs=71.5
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhc
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 331 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y 331 (338)
|++||+++.||+|++|+++|.++||+|+.+++..++++.++|+++||.++||+|+|+++|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 57899999999999999999999999999999877667889999999999999998656899999999999999986
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.77 E-value=3.6e-18 Score=155.19 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=86.2
Q ss_pred CceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhC
Q 019633 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~ 212 (338)
.+++||+++.||+|++||++|+|+||+|+++.++... .. +.++++||.|+||+|+| +|..|+||.||++||+++|+
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~-~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~ 84 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDN-LP-QDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFP 84 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCccc-CC-HHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCC
Confidence 3799999999999999999999999999999998642 33 44558999999999998 79999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHhhcchhh
Q 019633 213 KGRSPSTGLLESTLITGWMPTIF 235 (338)
Q Consensus 213 ~~~~p~~~~~e~a~~~~Wl~~~~ 235 (338)
...+.+.++.+++++..|+.++.
T Consensus 85 ~~~l~p~~~~~ra~~~~~~~~~~ 107 (211)
T PRK09481 85 HPPLMPVYPVARGESRLMMHRIE 107 (211)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Confidence 76556667888999999987653
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=99.75 E-value=1.1e-17 Score=152.43 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=86.1
Q ss_pred CceEEEEcC--CChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 133 TRLQLFEFE--ACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 133 ~~l~LY~~~--~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
+|++||+++ .||+|++|+++|+|+||+|+.+.++. +++..++ ++++||.|+||+|+| +|..|+||.||++||+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~-~~~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPT-YQGYSLTRRVPTLQH--DDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHH-HHhcCCCCCCCEEEE--CCEEEecHHHHHHHHH
Confidence 579999976 69999999999999999999998875 3334444 458999999999999 7899999999999999
Q ss_pred HhhCCCC---CCCCCHHHHHHHHhhcchhhh
Q 019633 209 QQYGKGR---SPSTGLLESTLITGWMPTIFR 236 (338)
Q Consensus 209 ~~y~~~~---~p~~~~~e~a~~~~Wl~~~~~ 236 (338)
++|++.. +.|.+..+++++.+|+.+...
T Consensus 81 ~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~ 111 (214)
T PRK15113 81 ERFAPPAWERIYPADLQARARARQIQAWLRS 111 (214)
T ss_pred HHcCCCCccccCCCCHHHHHHHHHHHHHHHh
Confidence 9998654 666788889999999887743
No 5
>PRK11752 putative S-transferase; Provisional
Probab=99.74 E-value=1.2e-17 Score=157.89 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=100.4
Q ss_pred hhhhhhhhcccCCCCcccCCCCCccccCCCCCCCceEEEEcCCChhHHHHHHHHHHc------CCCeEEEEcCC--CCCC
Q 019633 100 ATSSLSTLARLPWGSRSLSEGSDTQEISNSDSPTRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPK--GSIR 171 (338)
Q Consensus 100 ~~s~~a~~~R~~~G~~~~~~~~~~~~~~~~~p~~~l~LY~~~~cP~c~kVr~~L~el------gi~ye~~~v~~--~~~~ 171 (338)
-++++|.+.|+..|++..+ ..+..+++|+||+.. ||+|++|+++|+|+ |++|+.+.++. +++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~ 88 (264)
T PRK11752 18 NGGAFANINRPVAGATHEK--------TLPVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQF 88 (264)
T ss_pred CCCcccccCCCCCCcchhc--------ccCCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCcccccc
Confidence 4678999999999987766 233456799999975 99999999999997 89999988764 3334
Q ss_pred CHHHHHHhCCCCceeEEEeCCC--CeEEecHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhhcchhh
Q 019633 172 HREMVRRLGGKEQFPFLIDPNT--GVSMYESGDIVNYLFQQYGKGRSPSTGLLESTLITGWMPTIF 235 (338)
Q Consensus 172 ~~e~l~~~nP~~qVP~Lvd~n~--g~~l~ES~aI~~YL~~~y~~~~~p~~~~~e~a~~~~Wl~~~~ 235 (338)
.+++ .++||.++||+|+++++ |..|+||.||++||+++|+. +.|.+..+++++.+|+.+..
T Consensus 89 ~~e~-~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~--L~P~~~~era~v~~wl~~~~ 151 (264)
T PRK11752 89 SSGF-VEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGA--FLPKDLAARTETLNWLFWQQ 151 (264)
T ss_pred CHHH-HhhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCC--cCCCCHHHHHHHHHHHHHHh
Confidence 4554 48999999999998532 47899999999999999974 44567888999999988764
No 6
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.72 E-value=2.6e-17 Score=126.34 Aligned_cols=74 Identities=28% Similarity=0.540 Sum_probs=67.0
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 137 LFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 137 LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
||+++.||||+|||++|+++||+|++++++.++ .++.+.++||.++||+|++ +|..|+||.+|++||+++|++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~--~~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE--KRPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS--TSHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc--chhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999998654 2455668999999999997 7999999999999999999863
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.7e-17 Score=147.45 Aligned_cols=102 Identities=24% Similarity=0.344 Sum_probs=84.0
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
++||+.+.||+|+||+++|.|+|++|+.+.++.......+.+.++||.|+||+|+++ +|.+|+||.||++||+++|++.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCCC
Confidence 589999999999999999999999999999987542334445599999999999995 4449999999999999999986
Q ss_pred CCCCCCHH---HHHHHHhhcchhhhc
Q 019633 215 RSPSTGLL---ESTLITGWMPTIFRA 237 (338)
Q Consensus 215 ~~p~~~~~---e~a~~~~Wl~~~~~~ 237 (338)
.+.|.+.. +++.+..|+.+....
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~ 105 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASD 105 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhc
Confidence 34444543 788899998887443
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.69 E-value=1.7e-16 Score=144.39 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=81.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeC---CCC--eEEecHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDP---NTG--VSMYESGDIVNY 206 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~---n~g--~~l~ES~aI~~Y 206 (338)
|++||+.+ +|+|++|+++|+|+||+|+.+.++. +++..++ ++++||.|+||+|+|. ++| .+|+||.||++|
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~-~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPE-FLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHH-HHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 58999887 7999999999999999999998864 3333455 4589999999999983 245 579999999999
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcchhhhc
Q 019633 207 LFQQYGKGRSPSTGLLESTLITGWMPTIFRA 237 (338)
Q Consensus 207 L~~~y~~~~~p~~~~~e~a~~~~Wl~~~~~~ 237 (338)
|+++|+ .+++.++.+++++.+|+.+....
T Consensus 79 L~~~~~--~l~p~~~~~ra~~~~~~~~~~~~ 107 (215)
T PRK13972 79 LAEKTG--LFLSHETRERAATLQWLFWQVGG 107 (215)
T ss_pred HHHhcC--CCCCCCHHHHHHHHHHHHHHhhc
Confidence 999986 34556788899999999876443
No 9
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.69 E-value=1.6e-16 Score=120.12 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=64.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhh
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y 211 (338)
|+||+++.||+|++++++|+++|++|+.+.++.. ... +.++++||.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~-~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPP-EDLAELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC-CCC-HHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999998754 233 45558999999999998 6789999999999999875
No 10
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.68 E-value=1.5e-16 Score=120.69 Aligned_cols=73 Identities=23% Similarity=0.391 Sum_probs=63.0
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCC-CCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG-SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~-~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
++||+++.||+|++++++|+++|++|+.+.++.. .....+.++++||.++||+|++ +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999988742 2223345558999999999998 68999999999999974
No 11
>PLN02473 glutathione S-transferase
Probab=99.68 E-value=2e-16 Score=143.20 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=85.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCC--CCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhh
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~--~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y 211 (338)
.++||+++.||+|++|+++|+|+||+|+.+.++.. +...++++ ++||.|+||+|+| +|..|+||.+|++||+++|
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~ 78 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHL-LRQPFGQVPAIED--GDLKLFESRAIARYYATKY 78 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHH-hhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHc
Confidence 37999999999999999999999999999987643 34556665 7999999999998 7899999999999999999
Q ss_pred CCC--CCCCCCHHHHHHHHhhcchhhhcc
Q 019633 212 GKG--RSPSTGLLESTLITGWMPTIFRAG 238 (338)
Q Consensus 212 ~~~--~~p~~~~~e~a~~~~Wl~~~~~~~ 238 (338)
++. .+.+.+..+++++.+|+.......
T Consensus 79 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~ 107 (214)
T PLN02473 79 ADQGTDLLGKTLEHRAIVDQWVEVENNYF 107 (214)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 753 345667788999999998765443
No 12
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.67 E-value=3.1e-16 Score=121.56 Aligned_cols=78 Identities=27% Similarity=0.494 Sum_probs=66.1
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCC-CCeEEecHHHHHHHHHHh
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 210 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n-~g~~l~ES~aI~~YL~~~ 210 (338)
|++||+++. |+|++||++|+++||+|+.+.++. +.... +.++++||.++||+|++++ +|..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~-~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKK-PEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccC-HHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 589999985 999999999999999999998874 33334 4455899999999999842 189999999999999999
Q ss_pred hCC
Q 019633 211 YGK 213 (338)
Q Consensus 211 y~~ 213 (338)
|+.
T Consensus 79 ~~~ 81 (81)
T cd03048 79 YDK 81 (81)
T ss_pred hCC
Confidence 873
No 13
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.67 E-value=1.7e-16 Score=123.02 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=69.6
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCC-CCeeeccHHHHHHHHhhhc
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPN-TSTQIGDYKKILSYLFQSY 331 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~-~g~~l~ES~aI~~YL~~~y 331 (338)
|++||+++. |+|++++++|.++|++|+.+.++ .+..+.++|+++||.++||+|+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 578999886 99999999999999999998886 4567789999999999999999853 2789999999999999998
Q ss_pred CC
Q 019633 332 SA 333 (338)
Q Consensus 332 ~~ 333 (338)
++
T Consensus 80 ~~ 81 (81)
T cd03048 80 DK 81 (81)
T ss_pred CC
Confidence 74
No 14
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.67 E-value=2.7e-16 Score=120.74 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=62.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
++||+++.||+|++||++|+|+|++|+.+.++. ++++. +.+.++||.++||+|++ +|..|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~-~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNE-PWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCC-HHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 479999999999999999999999999998764 33334 44559999999999998 7899999999999985
No 15
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6e-16 Score=143.11 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=90.6
Q ss_pred CceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhC-CCCceeEEEeCCCCeEEecHHHHHHHHHHhh
Q 019633 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~n-P~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y 211 (338)
..++||++..|||++||+++|+++||+||+++++..+ .++++++.| ++++||+|++ +|..|+||..|++||++.|
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhc
Confidence 5799999999999999999999999999999998643 667888999 7999999999 7888999999999999999
Q ss_pred CC-CCCCCCCHHHHHHHHhhcchhhh
Q 019633 212 GK-GRSPSTGLLESTLITGWMPTIFR 236 (338)
Q Consensus 212 ~~-~~~p~~~~~e~a~~~~Wl~~~~~ 236 (338)
++ ....|.|+.+|++...|+.++..
T Consensus 84 ~~~~~iLP~DPy~Ra~arfwa~~id~ 109 (231)
T KOG0406|consen 84 PSGPPILPSDPYERAQARFWAEYIDK 109 (231)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 94 66778899999999999998863
No 16
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3e-16 Score=138.74 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=86.9
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhh
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y 211 (338)
..+||+|..|.++.|||++|..+|||||+++++. ++.+....++++||.+|||.|++ +|.+|.||.||++||+++|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhcC
Confidence 5789999999999999999999999999999863 33344445669999999999999 8999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcchhhh
Q 019633 212 GKGRSPSTGLLESTLITGWMPTIFR 236 (338)
Q Consensus 212 ~~~~~p~~~~~e~a~~~~Wl~~~~~ 236 (338)
++..++|.|+..|+...+-...+..
T Consensus 83 P~ppLLP~d~~KRA~~r~i~~~i~s 107 (217)
T KOG0868|consen 83 PDPPLLPKDPHKRAKARAISLLIAS 107 (217)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 9988888888888877776665543
No 17
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.65 E-value=7.4e-16 Score=117.48 Aligned_cols=73 Identities=26% Similarity=0.348 Sum_probs=63.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCC-CceeEEEeCCCCeEEecHHHHHHHHHHhh
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~-~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y 211 (338)
|+||+++.||+|+++|++|+++|++|+.+.++.. .+. +.++++||. ++||+|++ +|..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~-~~~~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKS-ELLLASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCC-HHHHHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999987653 233 445589995 99999998 6899999999999999874
No 18
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.64 E-value=7.4e-16 Score=116.56 Aligned_cols=71 Identities=30% Similarity=0.480 Sum_probs=61.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
|+||+++.||||+|||++|.++|++|+.+.++.+. .... .+.+|.++||+|+++ +|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~--~~~~-~~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD--EATP-IRMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc--hHHH-HHhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887542 2233 368999999999984 58999999999999975
No 19
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.64 E-value=9.1e-16 Score=116.34 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=61.1
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHH
Q 019633 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (338)
Q Consensus 136 ~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL 207 (338)
+||++++||||++|+++|+++|++|+.+.++... ..+.++++||.++||+|+++ +|..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~--~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN--KPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC--CCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 7999999999999999999999999999987642 23455689999999999984 688999999999996
No 20
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.64 E-value=5.3e-16 Score=119.11 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=64.0
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
++||.++.||+|++|+++|.|+|++|+.+.++ .++++.++|+++||.|+||+|+| +|.+|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 46899999999999999999999999998874 44567789999999999999998 4789999999999995
No 21
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.63 E-value=7.3e-16 Score=118.33 Aligned_cols=74 Identities=28% Similarity=0.519 Sum_probs=67.9
Q ss_pred hccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCCC
Q 019633 258 LFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 334 (338)
Q Consensus 258 Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~~ 334 (338)
||++..||||+++|++|.++||+|+.+++..+. +.++|.++||.++||+|++ +|..++||.+|++||+++|++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE-KRPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS-TSHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc-chhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCCC
Confidence 688999999999999999999999999997653 4899999999999999996 3889999999999999999874
No 22
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.63 E-value=9.7e-16 Score=115.40 Aligned_cols=72 Identities=25% Similarity=0.293 Sum_probs=61.9
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
++||+++.||+|+++|++|+++|++|+.+.++. ++... +.+.++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~-~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRS-PEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCC-HHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 589999999999999999999999999998864 22233 445689999999999864 6789999999999985
No 23
>PRK10387 glutaredoxin 2; Provisional
Probab=99.63 E-value=8.7e-16 Score=138.34 Aligned_cols=95 Identities=29% Similarity=0.529 Sum_probs=77.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
|+||++..||+|+|||++|+++||+|+.+.++.+++.. .. +.||.++||+|+.+ +|..|+||.+|++||+++|++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~--~~-~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT--PI-RMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh--HH-HhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999999987654322 23 68999999999532 7899999999999999999875
Q ss_pred CCCCCCHHHHHHHHhhcchhhh
Q 019633 215 RSPSTGLLESTLITGWMPTIFR 236 (338)
Q Consensus 215 ~~p~~~~~e~a~~~~Wl~~~~~ 236 (338)
.+. + .+++.+.+|++....
T Consensus 77 ~l~--~-~~~~~~~~~~~~~~~ 95 (210)
T PRK10387 77 LLT--G-KRSPAIEEWLRKVFG 95 (210)
T ss_pred cCC--C-cccHHHHHHHHHHHH
Confidence 443 1 246778888876643
No 24
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.63 E-value=7.1e-16 Score=116.98 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=65.5
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
++||.++.||+|++++++|.++|++|+.+.++ .++++.++|.++||.++||+|+++ |..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDN--GFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEEC--CEEEEcHHHHHHHHhC
Confidence 47899999999999999999999999999886 456678999999999999999984 6899999999999974
No 25
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.63 E-value=1.6e-15 Score=116.17 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=64.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCC-CCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhh
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~-~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y 211 (338)
++||+++.||+|++|+++|+++|++|+.+.++..+ ....+.+.++||.++||+|++ +|..|+||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999999999887432 122334658999999999998 6889999999999999875
No 26
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.63 E-value=1.6e-15 Score=115.71 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=64.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCC-CCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHh
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~-~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~ 210 (338)
++||+++.||+|+++|++|+++|++|+.+.++... ....+.++++||.++||+|++ +|..|+||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 78999999999999999999999999999887432 223345668999999999998 689999999999999863
No 27
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.63 E-value=2e-15 Score=115.81 Aligned_cols=75 Identities=23% Similarity=0.483 Sum_probs=63.6
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCC--CCeEEecHHHHHHHHHHhh
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPN--TGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n--~g~~l~ES~aI~~YL~~~y 211 (338)
.++||+++.||||++||++|.++||+|+.++++.. ..+.+ +.+|.++||+|++++ +|.+|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~---~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV---SRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch---hHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 37999999999999999999999999999988532 22334 579999999999742 4789999999999999875
Q ss_pred C
Q 019633 212 G 212 (338)
Q Consensus 212 ~ 212 (338)
|
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 3
No 28
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.62 E-value=1.9e-15 Score=113.84 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=62.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
++||+++.||+|++||++|+++|++|+.+.++. +++.. +.+.++||.++||+|++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRT-PEFLALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCC-HHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999998874 33333 45558999999999999 6899999999999984
No 29
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.61 E-value=2.3e-15 Score=135.59 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=83.0
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCC---CCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhC
Q 019633 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG---SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (338)
Q Consensus 136 ~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~---~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~ 212 (338)
+||++..||+|++||++|.++||+|+.+.++.. ++.. +.+.++||.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~-~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRS-PEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCC-hhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCC
Confidence 489999999999999999999999999988742 2333 44558999999999998 78999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHhhcchhh
Q 019633 213 KGRSPSTGLLESTLITGWMPTIF 235 (338)
Q Consensus 213 ~~~~p~~~~~e~a~~~~Wl~~~~ 235 (338)
+..+.+.+..+++++.+|+....
T Consensus 78 ~~~l~p~~~~~~a~~~~~~~~~~ 100 (210)
T TIGR01262 78 DPPLLPADPIKRARVRALALLIA 100 (210)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHh
Confidence 76555667888999999988764
No 30
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.61 E-value=2.9e-15 Score=134.48 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=81.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
++||++..||++++||++|+++||+|+.+.++.. .....+.++||.|+||+|+++ +|.+|+||.+|++||+++|++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~--~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPY--NADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCC--CCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999887642 223345578999999999853 7889999999999999998765
Q ss_pred CCCCCCHHHHHHHHhhcchhhh
Q 019633 215 RSPSTGLLESTLITGWMPTIFR 236 (338)
Q Consensus 215 ~~p~~~~~e~a~~~~Wl~~~~~ 236 (338)
.+.+.+..+++++.+|+.....
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~ 99 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADG 99 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 5566677788888888765433
No 31
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.61 E-value=2.2e-15 Score=115.48 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=63.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 136 ~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
+||+++.||+|+++|++|+++|++|+.+.++.......+.++++||.++||+|+++ +|..|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 69999999999999999999999999998876432333456689999999999975 58899999999999986
No 32
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.61 E-value=2.7e-15 Score=120.60 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 141 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 141 ~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
..||||++||++|.++||+|+++.++... .+++++++||.|+||+|+| +|.+++||.+|++||+++|...
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~--~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR--KPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC--CCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCC
Confidence 46999999999999999999999997643 3466779999999999999 7899999999999999998754
No 33
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.61 E-value=2.4e-15 Score=113.61 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=66.2
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhc
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 331 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y 331 (338)
++||+.+.||+|++++++|.++|++|+.+.++.. ++.++|+++||.++||+|+++ |..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELNPYGTVPTLVDR--DLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhCCCCCCCEEEEC--CEEEEcHHHHHHHHHhhC
Confidence 4789999999999999999999999999988754 567899999999999999974 579999999999999876
No 34
>PLN02395 glutathione S-transferase
Probab=99.59 E-value=9.5e-15 Score=132.22 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=81.1
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhh
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y 211 (338)
.++||+...| +++||+++|.|+||+|+.+.++. +++..++ ++++||.|+||+|+| +|.+|+||.+|++||+++|
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~-~~~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPE-YLALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHH-HHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHc
Confidence 3799997664 68999999999999999998864 2334444 558999999999998 7889999999999999999
Q ss_pred CCC--CCCCCCHHHHHHHHhhcchhhh
Q 019633 212 GKG--RSPSTGLLESTLITGWMPTIFR 236 (338)
Q Consensus 212 ~~~--~~p~~~~~e~a~~~~Wl~~~~~ 236 (338)
+.. .+.|.+..+++++.+|+.....
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~~~ 104 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVEAT 104 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHHHH
Confidence 752 3556677889999999887543
No 35
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.59 E-value=5.5e-15 Score=112.51 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=61.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
++||+++.||+|++||++|+++|++|+.+.++. ++...+ .++++||.++||+|++ +|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~-~~~~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTP-EFLAMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCH-HHHhhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 589999999999999999999999999998863 233344 4558999999999999 7889999999999984
No 36
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.59 E-value=8.4e-15 Score=116.32 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=64.7
Q ss_pred CCceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 132 PTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 132 ~~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
+.+++||+++.||+|++|+++|.++|++|+.+.++... .++.+.++||.++||+|+++ +|..|+||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~--~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD--KPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC--CcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 45899999999999999999999999999999987543 33546689999999999983 4889999999999985
No 37
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.59 E-value=3.1e-15 Score=114.34 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=63.7
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHh
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~ 210 (338)
+++||+++.|++|+++|++|+++|++|+.+.++.+.+ .+.++++||.++||+|+| +|..|+||.||++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~--~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEW--QESLKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHh--hhhhhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 4799999999999999999999999999999875322 234558999999999998 789999999999999863
No 38
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.59 E-value=6.2e-15 Score=113.06 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=63.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCC-CCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~-~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~ 212 (338)
++||+++.| +|++||++|+++|++|+.+.++... ....+.++++||.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 589999976 5999999999999999998886432 1223445589999999999984 58999999999999999875
No 39
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.59 E-value=4.8e-15 Score=135.00 Aligned_cols=96 Identities=27% Similarity=0.398 Sum_probs=76.5
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCCC
Q 019633 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGR 215 (338)
Q Consensus 136 ~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~~ 215 (338)
+||.+..||||+|||++|.++|++|+.++++.++.. .. .++||.++||+|+++ +|..|+||.+|++||+++|+...
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~-~~~np~g~vP~l~~~-~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TP-IRMIGAKQVPILQKD-DGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hH-HHhcCCCCcceEEee-CCeEeccHHHHHHHHHHhCCCcc
Confidence 589999999999999999999999999988765432 22 479999999999832 78999999999999999998643
Q ss_pred CCCCCHHHHHHHHhhcchhhhcc
Q 019633 216 SPSTGLLESTLITGWMPTIFRAG 238 (338)
Q Consensus 216 ~p~~~~~e~a~~~~Wl~~~~~~~ 238 (338)
.++ .++.++.+|+.......
T Consensus 77 ~~~---~~~~~~~~~~~~~~~~~ 96 (209)
T TIGR02182 77 LTG---KVSPEIEAWLRKVTGYA 96 (209)
T ss_pred CCC---CChHHHHHHHHHHHHHh
Confidence 322 24567778877654443
No 40
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.59 E-value=3.3e-15 Score=113.56 Aligned_cols=68 Identities=32% Similarity=0.459 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHh
Q 019633 142 ACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (338)
Q Consensus 142 ~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~ 210 (338)
.||||+||+++|+++||+|++..+.. ......+.+.++||.++||+|+|+ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999877732 223333456689999999999997 888999999999999975
No 41
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.59 E-value=6.4e-15 Score=113.06 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=61.5
Q ss_pred ceEEEEcC-------CChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHH
Q 019633 134 RLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (338)
Q Consensus 134 ~l~LY~~~-------~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~Y 206 (338)
|++||.++ .||+|++|+++|.++|++|+.+.++. ++++|.+|||+|++ +|..|+||.+|++|
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~---------~~~~p~g~vPvl~~--~g~~l~eS~~I~~y 69 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL---------AKRSPKGKLPFIEL--NGEKIADSELIIDH 69 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc---------ccCCCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 57999998 57999999999999999999988753 15899999999998 68999999999999
Q ss_pred HHHhhC
Q 019633 207 LFQQYG 212 (338)
Q Consensus 207 L~~~y~ 212 (338)
|+++|+
T Consensus 70 L~~~~~ 75 (75)
T cd03080 70 LEEKYG 75 (75)
T ss_pred HHHHcC
Confidence 999986
No 42
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.59 E-value=2.9e-15 Score=113.60 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=62.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
++||.++.|++|++||++|+++|++|+.+.++..++...+ +.++||.++||+|+| +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~-~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELD-LKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhh-hccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999998764333333 557999999999999 68999999999999974
No 43
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.58 E-value=5.9e-15 Score=132.03 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=81.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCC--CCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~--~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~ 212 (338)
|+||+... +++++|+++|+++||+|+.+.++.. .....+.+.++||.|+||+|+++ +|.+|+||.+|++||+++|+
T Consensus 1 m~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred Cceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhCc
Confidence 58999875 4799999999999999999887642 22233456699999999999853 78999999999999999998
Q ss_pred CCC-CCCCCHHHHHHHHhhcchhhhc
Q 019633 213 KGR-SPSTGLLESTLITGWMPTIFRA 237 (338)
Q Consensus 213 ~~~-~p~~~~~e~a~~~~Wl~~~~~~ 237 (338)
+.. .++.+..+++++.+|+.+....
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~ 104 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATE 104 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhh
Confidence 754 3455677899999999876543
No 44
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.58 E-value=5.9e-15 Score=112.48 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=65.5
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCC-CcccEEEcCCCCeeeccHHHHHHHHhhhc
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGS-KEVPYLIDPNTSTQIGDYKKILSYLFQSY 331 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~-g~VP~L~d~~~g~~l~ES~aI~~YL~~~y 331 (338)
++||++..||+|++++++|.++|++|+.+.++.. .+.++|.++||. ++||+|+++ |..++||.+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~--~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHN--GKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEEC--CEEeehHHHHHHHHHhhC
Confidence 4789999999999999999999999999887653 567899999995 999999984 689999999999999875
No 45
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.58 E-value=6.6e-15 Score=112.77 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=65.9
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhc
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 331 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y 331 (338)
++||.++.|++|++++++|.++|++|+.+.++ .++.+.++|.++||.++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 46899999999999999999999999998885 34456689999999999999998 3688999999999999876
No 46
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.57 E-value=4.7e-15 Score=134.76 Aligned_cols=77 Identities=23% Similarity=0.369 Sum_probs=70.7
Q ss_pred ccchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 254 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 254 k~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
.+++||++..||+|++|+++|.|+|++|+.+.++.. ++.++|+++||.|+||+|+| +|.+|+||.||++||+++|+.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCC
Confidence 368999999999999999999999999999998763 56789999999999999998 478999999999999999974
No 47
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.57 E-value=8.2e-15 Score=111.26 Aligned_cols=71 Identities=25% Similarity=0.348 Sum_probs=61.4
Q ss_pred eEEEEcCCChhHHHHHHHHHH--cCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITE--LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~e--lgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
++||+++.||+|+++|++|.+ +|++|+.+.++.. ...+.++++||.++||+|+++ +|..|+||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW--SDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc--cCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999988742 223445589999999999864 7889999999999985
No 48
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.56 E-value=1.4e-14 Score=110.15 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=63.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCC-CCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG-SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~-~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~ 212 (338)
++||+++. ++|++||++|+++|++|+.+.++.. .+...+.++++||.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 57999885 6899999999999999999988753 1223344558999999999998 78999999999999999875
No 49
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.56 E-value=1e-14 Score=109.81 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=64.6
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
++||.++.||+|++++++|.++|++|+.+.++ .++++.++|.++||.++||+|+++ |..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~--~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELD--GRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEEC--CEEEEcHHHHHHHhC
Confidence 47899999999999999999999999999886 455678999999999999999984 789999999999984
No 50
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.55 E-value=1.2e-14 Score=110.10 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=62.5
Q ss_pred hhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 019633 257 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 327 (338)
Q Consensus 257 ~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL 327 (338)
+||++..||+|++++++|.++|++|+.+.++.. .+.++|+++||.++||+|+++ +|..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~-~~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK-NKPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC-CCCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 689999999999999999999999999998754 456899999999999999985 478999999999997
No 51
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.55 E-value=1.3e-14 Score=109.24 Aligned_cols=72 Identities=26% Similarity=0.292 Sum_probs=63.8
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
++||+++.||+|+++|++|.++|++|+.+.++ .+..+.++|.++||.++||+|+++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 47899999999999999999999999998875 344567899999999999999864 3678999999999995
No 52
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.54 E-value=1.4e-14 Score=110.25 Aligned_cols=71 Identities=27% Similarity=0.302 Sum_probs=63.6
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
++||.++.||++++++++|+++|++|+.+.++ .++.+.++|.++||.++||+|+|+ |..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~--~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDG--DFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEEC--CEEEECHHHHHHHhC
Confidence 46899999999999999999999999998875 345678899999999999999984 689999999999984
No 53
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.54 E-value=2.1e-14 Score=115.37 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=63.2
Q ss_pred cCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCCC
Q 019633 262 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 334 (338)
Q Consensus 262 ~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~~ 334 (338)
..||||+++|++|.++||+|+.+.++-. .+.++|+++||.|+||+|+| +|.+++||.+|++||+++|...
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~-~~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK-RKPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC-CCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCC
Confidence 5799999999999999999999998754 35689999999999999998 4789999999999999998764
No 54
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.54 E-value=1.6e-14 Score=110.14 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=65.2
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCC--CCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~--g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
++||.++.||+|++++++|.++|++|+.+.++. ++.+.++|.++||.++||+|+++ |..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~--g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDG--DLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEEC--CEEEEcHHHHHHHHhhC
Confidence 679999999999999999999999999988753 34567899999999999999984 78999999999999863
No 55
>PRK15113 glutathione S-transferase; Provisional
Probab=99.54 E-value=1.3e-14 Score=132.11 Aligned_cols=78 Identities=23% Similarity=0.340 Sum_probs=70.2
Q ss_pred ccchhcccc--CChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 254 KKLELFSYE--NNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 254 k~l~Ly~~~--~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
+|++||+.. .||+|++|+++|.|+||+|+.+.++ .++++.++|+++||.|+||+|+| +|.+|+||.+|++||++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~~ 81 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFELSESSAIAEYLEE 81 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEEecHHHHHHHHHH
Confidence 568999975 6999999999999999999998885 35667899999999999999998 46899999999999999
Q ss_pred hcCC
Q 019633 330 SYSA 333 (338)
Q Consensus 330 ~y~~ 333 (338)
+|+.
T Consensus 82 ~~~~ 85 (214)
T PRK15113 82 RFAP 85 (214)
T ss_pred HcCC
Confidence 9974
No 56
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.54 E-value=2.8e-14 Score=107.62 Aligned_cols=71 Identities=25% Similarity=0.315 Sum_probs=61.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
++||++..||+|+++|++|.++|++|+.+.++. +.+.. +.++++||.++||+|++ +|..|+||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~-~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLS-PAYRALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCC-hHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999988864 22333 44558999999999999 6889999999999985
No 57
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.4e-14 Score=130.82 Aligned_cols=103 Identities=30% Similarity=0.472 Sum_probs=89.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcC--CCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhh
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~--~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y 211 (338)
.++||+++.+|.|++|.+++.++|++|+++.++ .+++..++|+ ++||.++||+|+| +|..++||.||+.||.++|
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl-~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFL-KLNPLGKVPALED--GGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHH-hcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHc
Confidence 578999999999999999999999999998664 4667777777 8999999999999 6999999999999999999
Q ss_pred C-CCC-CCCCCHHHHHHHHhhcchhhhccc
Q 019633 212 G-KGR-SPSTGLLESTLITGWMPTIFRAGR 239 (338)
Q Consensus 212 ~-~~~-~p~~~~~e~a~~~~Wl~~~~~~~~ 239 (338)
+ .+. +++.+..+++.+.+|++.....+.
T Consensus 79 ~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~ 108 (226)
T KOG0867|consen 79 GPLGGILLPKDLKERAIVDQWLEFENGVLD 108 (226)
T ss_pred CCCCcccCCcCHHHHHHHHHHHHhhhcccc
Confidence 7 223 677788889999999977654433
No 58
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.53 E-value=2.3e-14 Score=109.87 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=64.9
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~ 332 (338)
++||.++.+ ++++|+++|.++|++|+.+.++ .++.+.++|+++||.++||+|+++ +|..++||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 368888865 5889999999999999998775 345678999999999999999985 37899999999999999874
No 59
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.53 E-value=1.9e-14 Score=108.74 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=61.6
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
++||.+..||||+++|++|.++|++|+.+.++.+. ....++.+|.++||+|+++ +|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~--~~~~~~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD--EATPIRMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc--hHHHHHhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 46899999999999999999999999999887542 2355789999999999975 37899999999999975
No 60
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.53 E-value=1.5e-14 Score=110.91 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=63.5
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCC--CCeeeccHHHHHHHHhhhcC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPN--TSTQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~--~g~~l~ES~aI~~YL~~~y~ 332 (338)
+++||.++.||||++++.+|.++||+|+.++++.. ..++ ++.+|.++||+|++++ +|.+|+||.+|++||+++.|
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch--hHHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 36899999999999999999999999999987542 2334 4779999999999753 47899999999999998753
No 61
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.53 E-value=2.5e-14 Score=111.82 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=58.0
Q ss_pred CCChhHHHHHHHHHHcCCCeEEEEcCCCCC-CCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhC
Q 019633 141 EACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (338)
Q Consensus 141 ~~cP~c~kVr~~L~elgi~ye~~~v~~~~~-~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~ 212 (338)
..||||+|||++|.++||+|+.+.++.... ...+++ ++||.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 479999999999999999999998764321 222344 78999999999983 38899999999999999875
No 62
>PLN02378 glutathione S-transferase DHAR1
Probab=99.52 E-value=4.2e-14 Score=129.05 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=71.4
Q ss_pred EcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCCCCCC
Q 019633 139 EFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPS 218 (338)
Q Consensus 139 ~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~~~p~ 218 (338)
.+..||||++|+++|+++|++|+.+.++... + ++.++++||.|+||+|++ +|.+|+||.+|++||+++|++..+
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~-~~~~l~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~~l-- 89 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSD-K-PQWFLDISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDPPL-- 89 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCccc-C-CHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCCCC--
Confidence 3456999999999999999999999987642 3 344558999999999998 678999999999999999986432
Q ss_pred CCHHHHHHHHhhcc
Q 019633 219 TGLLESTLITGWMP 232 (338)
Q Consensus 219 ~~~~e~a~~~~Wl~ 232 (338)
.++.+++.+.+++.
T Consensus 90 ~~~~~~a~i~~~~~ 103 (213)
T PLN02378 90 KTPAEFASVGSNIF 103 (213)
T ss_pred CCHHHHHHHHHHHH
Confidence 24566777766654
No 63
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.52 E-value=6.1e-14 Score=102.39 Aligned_cols=71 Identities=32% Similarity=0.428 Sum_probs=62.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
++||++++||+|+++|++|+++|++|+.+.++....... .+++.+|.+++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE-EFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 479999999999999999999999999999876543333 4657899999999999 6899999999999984
No 64
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.6e-14 Score=129.49 Aligned_cols=78 Identities=28% Similarity=0.461 Sum_probs=70.2
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCC-CCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCCC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 334 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g-~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~~ 334 (338)
++||+...||+|++|+++|.|+|++|+.+.|+.. ..+.++|+++||.|+||+|+|++ |.+|+||.+|++||+++|+..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~-~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDD-GEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCC-CCeeecHHHHHHHHHhhCCCC
Confidence 4688889999999999999999999999999765 47889999999999999999864 338999999999999999864
No 65
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.52 E-value=3.8e-14 Score=108.65 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=64.5
Q ss_pred hhccccCChhhHHHHHHHHhcCCceEEEEcCCC-CCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 257 ELFSYENNPYARIVREALCELELPYILQNVGDG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 257 ~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g-~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
+||.++.||++++++++|.++|++|+.+.++.. +++.++|.++||.++||+|+++ +|..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 589999999999999999999999999988643 3677899999999999999975 36799999999999975
No 66
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.51 E-value=3.8e-14 Score=107.70 Aligned_cols=67 Identities=34% Similarity=0.521 Sum_probs=57.5
Q ss_pred CChhhHHHHHHHHhcCCceEEEEc---CCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 263 NNPYARIVREALCELELPYILQNV---GDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 263 ~sP~~rkVr~aL~Elgi~ye~~~v---~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
.|||++|++++|.++||+|+...+ ..+..+.++|.+.||.++||+|+|+ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 499999999999999999999777 2445567899999999999999986 578999999999999874
No 67
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.51 E-value=3.6e-14 Score=129.06 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=67.3
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcC---CCC--eeeccHHHHHHHH
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDP---NTS--TQIGDYKKILSYL 327 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~---~~g--~~l~ES~aI~~YL 327 (338)
|++||..+ +|++++|+++|.|+||+|+.+.++ .++++.++|+++||.|+||+|+|+ ++| ++|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 57899766 799999999999999999998875 456678999999999999999973 235 5899999999999
Q ss_pred hhhcCC
Q 019633 328 FQSYSA 333 (338)
Q Consensus 328 ~~~y~~ 333 (338)
+++|+.
T Consensus 80 ~~~~~~ 85 (215)
T PRK13972 80 AEKTGL 85 (215)
T ss_pred HHhcCC
Confidence 999863
No 68
>PLN02473 glutathione S-transferase
Probab=99.51 E-value=4.1e-14 Score=128.13 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=69.5
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~ 332 (338)
.++||....||++++|+++|.|+||+|+.+.++ .++++.++|+++||.|+||+|+| +|.+|+||.+|++||+++|+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLKLFESRAIARYYATKYA 79 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHcC
Confidence 368999999999999999999999999998774 45678899999999999999998 46899999999999999996
Q ss_pred C
Q 019633 333 A 333 (338)
Q Consensus 333 ~ 333 (338)
.
T Consensus 80 ~ 80 (214)
T PLN02473 80 D 80 (214)
T ss_pred C
Confidence 4
No 69
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.50 E-value=2e-14 Score=108.98 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=63.3
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
++||.++.+++|+++|++|.++|++|+.+.++......++|.++||.++||+|+|+ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~--~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEID--GKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEEC--CEEEEecHHHHHHhhC
Confidence 46888999999999999999999999999887544445568999999999999984 6899999999999974
No 70
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.49 E-value=7.6e-14 Score=106.16 Aligned_cols=74 Identities=24% Similarity=0.332 Sum_probs=64.7
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCC--CCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGD--GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~--g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~ 332 (338)
++||.++. +++++++++|.++|++|+.+.++. +..+.++|+++||.++||+|+| +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 46787775 579999999999999999988864 4567899999999999999997 46899999999999999875
No 71
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.49 E-value=3.3e-14 Score=108.62 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=63.7
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
++||.++.+++++++|++|.++|++|+.+.++.+ ...++|.++||.++||+|+| +|..|+||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 6889999999999999999999999999988652 34568999999999999998 468999999999999763
No 72
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.48 E-value=9.1e-14 Score=105.50 Aligned_cols=71 Identities=27% Similarity=0.273 Sum_probs=63.2
Q ss_pred chhccccCChhhHHHHHHHHh--cCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCE--LELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~E--lgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
++||.+..||+|++++++|.+ +|++|+.+.++. ..+.++|+++||.++||+|+++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP-WSDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc-ccCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 478999999999999999999 899999998864 3567899999999999999854 4789999999999985
No 73
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.7e-14 Score=126.32 Aligned_cols=105 Identities=26% Similarity=0.380 Sum_probs=86.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
|+||-|++||||.|+|++...+|||++.+.+..++..++- ++-|.+|||+|+-+ +|..|.||.+|++|+++.+|..
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~---rmiG~KqVPiL~Ke-dg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI---RMIGQKQVPILQKE-DGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh---hhhcccccceEEcc-ccccchhhhHHHHHHHHhcCch
Confidence 6899999999999999999999999999999887766653 45679999999975 8999999999999999999875
Q ss_pred CCCCCCHHHHHHHHhhcchhhhccc--ccccccc
Q 019633 215 RSPSTGLLESTLITGWMPTIFRAGR--GMTLWEK 246 (338)
Q Consensus 215 ~~p~~~~~e~a~~~~Wl~~~~~~~~--g~~~~~~ 246 (338)
.+- ..-+..+..|+..+..... ++|+|.+
T Consensus 77 ~lt---~~~~pai~~wlrkv~~y~nkll~PR~~k 107 (215)
T COG2999 77 LLT---GKVRPAIEAWLRKVNGYLNKLLLPRFAK 107 (215)
T ss_pred hhc---cCcCHHHHHHHHHhcchHhhhhhhhHhh
Confidence 321 1235678899998865443 6677764
No 74
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.48 E-value=1.3e-13 Score=109.49 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=65.7
Q ss_pred cccchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 253 SKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 253 ek~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
..+++||.+..||+|++++++|.++|++|+.++++.. .+.++|.+.||.++||+|+++ +|..|+||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~-~~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK-DKPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC-CCcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 4579999999999999999999999999999988653 345779999999999999974 3689999999999995
No 75
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.46 E-value=3e-13 Score=105.14 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=60.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHh-----CCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRL-----GGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~-----nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
.+||+++.++.|++||++|+++|++|+.+.++.++ ++. +. .|.++||+|++ +|..|+||.||++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~----~~~-~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAE----DLE-KLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHH----HHH-hhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHH
Confidence 47999999999999999999999999999887531 221 23 35899999998 78999999999999999
Q ss_pred hhC
Q 019633 210 QYG 212 (338)
Q Consensus 210 ~y~ 212 (338)
+|+
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 987
No 76
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.46 E-value=2.3e-13 Score=129.08 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=73.0
Q ss_pred cCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCCCCCCC
Q 019633 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPST 219 (338)
Q Consensus 140 ~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~~~p~~ 219 (338)
...||||++|+++|+|+||+|+++.++... .+++++++||.|+||+|++ +|..|+||.+|++||+++|+...+ .
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~--~~~~fl~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~~L--~ 143 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTN--KPEWFLKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDPPL--A 143 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCc--CCHHHHhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCCCC--C
Confidence 345999999999999999999999887642 3445568999999999998 577999999999999999987543 2
Q ss_pred CHHHHHHHHhhcch
Q 019633 220 GLLESTLITGWMPT 233 (338)
Q Consensus 220 ~~~e~a~~~~Wl~~ 233 (338)
++.+++.+.+|+..
T Consensus 144 ~~~era~i~~~l~~ 157 (265)
T PLN02817 144 TPPEKASVGSKIFS 157 (265)
T ss_pred CHHHHHHHHHHHHH
Confidence 56678888888754
No 77
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.46 E-value=1.8e-13 Score=103.09 Aligned_cols=71 Identities=24% Similarity=0.228 Sum_probs=63.6
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
++||.+..+++++++|++|.++|++|+.+.++ .+..+.++|.++||.++||+|+|+ |..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~--~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVID--GLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEEC--CEEEEcHHHHHHHhC
Confidence 47899999999999999999999999998875 345677999999999999999984 679999999999985
No 78
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.45 E-value=2.3e-13 Score=106.65 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=60.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCC--CCC-CHHHHHHh----CCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIR-HREMVRRL----GGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 136 ~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~--~~~-~~e~l~~~----nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
+||.++.++.|+++|++|+++||+|+.+.++.. +.. ..++.... +|.++||+|+| +|..|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 689999999999999999999999999988642 221 23333222 29999999999 7899999999999999
Q ss_pred Hhh
Q 019633 209 QQY 211 (338)
Q Consensus 209 ~~y 211 (338)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 79
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.45 E-value=4.4e-13 Score=125.26 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=62.7
Q ss_pred cCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 140 ~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
...||||++|+++|.++||+|+++.++... .++.++++||.++||+|++ +|..|+||.+|++||+++|+..
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~--~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~ 86 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKR--KPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPP 86 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCC--CCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCC
Confidence 457999999999999999999999998643 2355669999999999999 7899999999999999999753
No 80
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.45 E-value=4.1e-13 Score=102.75 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=57.6
Q ss_pred cCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 140 ~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
...||+|++||++|+++|++|+.+.++..++...+.++++||.++||+|++ +|..|+||.+|++||+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 457999999999999999999999887644333455668999999999998 7889999999999984
No 81
>PRK10387 glutaredoxin 2; Provisional
Probab=99.44 E-value=1.9e-13 Score=123.16 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=64.9
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
++||++..||+|++|+++|.++||||+.+++..+.++. ..+.||.++||+|+.+ +|..|+||.+|++||+++|+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~--~~~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~ 75 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT--PIRMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGK 75 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh--HHHhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCC
Confidence 47899999999999999999999999999986654333 2689999999999533 478999999999999999975
No 82
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.44 E-value=2.2e-13 Score=104.53 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=59.8
Q ss_pred cchhcccc-------CChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 019633 255 KLELFSYE-------NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 327 (338)
Q Consensus 255 ~l~Ly~~~-------~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL 327 (338)
|++||.+. .||+|++|+++|.++|++|+.+.++. .++||.++||+|+++ |..++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~--g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELN--GEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEEC--CEEEcCHHHHHHHH
Confidence 46788877 58999999999999999999987653 278999999999984 68999999999999
Q ss_pred hhhcC
Q 019633 328 FQSYS 332 (338)
Q Consensus 328 ~~~y~ 332 (338)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99986
No 83
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.44 E-value=4.9e-13 Score=101.45 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=57.2
Q ss_pred eEEEEcC-------CChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHH
Q 019633 135 LQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (338)
Q Consensus 135 l~LY~~~-------~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL 207 (338)
++||.+. .||+|++++++|+++||+|+.+.++.. .++|.++||+|++ +|..++||.+|++||
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~---------~~~p~g~vP~l~~--~g~~l~es~~I~~yL 69 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP---------WRSPTGKLPFLEL--NGEKIADSEKIIEYL 69 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc---------ccCCCcccCEEEE--CCEEEcCHHHHHHHH
Confidence 3567766 899999999999999999999998642 2789999999999 789999999999999
Q ss_pred HHh
Q 019633 208 FQQ 210 (338)
Q Consensus 208 ~~~ 210 (338)
+++
T Consensus 70 ~~~ 72 (72)
T cd03054 70 KKK 72 (72)
T ss_pred hhC
Confidence 874
No 84
>PRK11752 putative S-transferase; Provisional
Probab=99.43 E-value=2.7e-13 Score=128.14 Aligned_cols=80 Identities=25% Similarity=0.372 Sum_probs=69.3
Q ss_pred cccchhccccCChhhHHHHHHHHhc------CCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCC--CCeeeccHHH
Q 019633 253 SKKLELFSYENNPYARIVREALCEL------ELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPN--TSTQIGDYKK 322 (338)
Q Consensus 253 ek~l~Ly~~~~sP~~rkVr~aL~El------gi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~--~g~~l~ES~a 322 (338)
.++++||+.. ||+|++|+++|.|+ |++|+.+.|+ .++++.++|+++||.|+||+|+|++ +|+.|+||.+
T Consensus 42 ~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~A 120 (264)
T PRK11752 42 KHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGA 120 (264)
T ss_pred CCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHH
Confidence 4589999865 99999999999997 8999998774 4556788999999999999999864 2589999999
Q ss_pred HHHHHhhhcCC
Q 019633 323 ILSYLFQSYSA 333 (338)
Q Consensus 323 I~~YL~~~y~~ 333 (338)
|++||++.|+.
T Consensus 121 Il~YL~~~~~~ 131 (264)
T PRK11752 121 ILLYLAEKFGA 131 (264)
T ss_pred HHHHHHHhcCC
Confidence 99999999873
No 85
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.42 E-value=3.1e-13 Score=105.63 Aligned_cols=69 Identities=28% Similarity=0.258 Sum_probs=57.8
Q ss_pred cCChhhHHHHHHHHhcCCceEEEEcCCC--CCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcC
Q 019633 262 ENNPYARIVREALCELELPYILQNVGDG--SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 262 ~~sP~~rkVr~aL~Elgi~ye~~~v~~g--~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~ 332 (338)
..||+|+++|++|.++|++|+.+.++.. .+..+++ ++||.++||+|+|+ +|..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 4699999999999999999999877532 2233455 89999999999984 36889999999999999874
No 86
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.39 E-value=9e-13 Score=101.71 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=59.5
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCC-CcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGS-KEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~-g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
+++|...+ .+.++|++|+++|++|+.+.++ .++++.++|+++||. |+||+|+|+ +|+.++||.||++||++
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 45565555 7999999999999999998774 566677999999999 999999996 48999999999999975
No 87
>PLN02378 glutathione S-transferase DHAR1
Probab=99.39 E-value=9e-13 Score=120.31 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=63.1
Q ss_pred cccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 260 SYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 260 ~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
.+..||||++|+++|.++|++|+.+.|+-. .+.++|+++||.|+||+|+|+ |.+|+||.+|++||+++|+.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~l~inP~G~VPvL~~~--~~~l~ES~aI~~YL~~~~~~ 86 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLS-DKPQWFLDISPQGKVPVLKID--DKWVTDSDVIVGILEEKYPD 86 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcc-cCCHHHHHhCCCCCCCEEEEC--CEEecCHHHHHHHHHHhCCC
Confidence 355799999999999999999999988653 466799999999999999984 57899999999999999975
No 88
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.38 E-value=2.1e-12 Score=99.64 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=56.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCC--CCCCCHHHHHHhCCC-CceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~--~~~~~~e~l~~~nP~-~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
++||.+. .+|.++|++|+++|++|+.+.++. +.++. +.+++.||. ++||+|+|+ +|..|+||.||++||++
T Consensus 3 l~l~~~~--~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~-~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNGR--GRSERIRLLLAEKGVEYEDVRVDFEKGEHKS-PEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESSS--TTTHHHHHHHHHTT--EEEEEEETTTTGGGS-HHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEECCC--CchHHHHHHHHHhcccCceEEEecccccccc-hhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 4555554 489999999999999999988764 33444 445589999 999999994 59999999999999985
No 89
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.7e-13 Score=118.14 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=70.1
Q ss_pred ccchhccccCChhhHHHHHHHHhcCCceEEEEcC--CC-CCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 254 KKLELFSYENNPYARIVREALCELELPYILQNVG--DG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 254 k~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g-~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
.+..||+|..|..+.+||++|..+||||+.+.|+ ++ .+...+|.++||.++||.|++ +|++|.||.||++||+++
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEET 81 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhc
Confidence 3568999999999999999999999999998874 33 455679999999999999998 589999999999999999
Q ss_pred cCCC
Q 019633 331 YSAS 334 (338)
Q Consensus 331 y~~~ 334 (338)
|+..
T Consensus 82 ~P~p 85 (217)
T KOG0868|consen 82 YPDP 85 (217)
T ss_pred CCCC
Confidence 9864
No 90
>PLN02395 glutathione S-transferase
Probab=99.38 E-value=1.2e-12 Score=118.37 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=65.6
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcC--CCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVG--DGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~--~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~ 332 (338)
.++||+...+ ++++|+++|.|+|++|+.+.++ .++.+.++|+++||.|+||+|+| +|..|+||.+|++||+++|+
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHcC
Confidence 3688986554 5899999999999999998875 44567789999999999999997 46899999999999999986
Q ss_pred C
Q 019633 333 A 333 (338)
Q Consensus 333 ~ 333 (338)
.
T Consensus 79 ~ 79 (215)
T PLN02395 79 S 79 (215)
T ss_pred C
Confidence 4
No 91
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.37 E-value=1.2e-12 Score=119.36 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=64.6
Q ss_pred hhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 257 ELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 257 ~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
+||.+..||||++||++|.++|++|+.+++..+.++ ..+++||.|+||+|+++ +|..|+||.+|++||+++|+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~~~~np~g~vP~l~~~-~g~~l~es~~I~~yL~~~~~~ 74 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TPIRMIGAKQVPILQKD-DGRAMPESLDIVAYFDKLDGE 74 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hHHHhcCCCCcceEEee-CCeEeccHHHHHHHHHHhCCC
Confidence 579999999999999999999999999988665443 34899999999999832 478999999999999999974
No 92
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.37 E-value=1.6e-12 Score=94.76 Aligned_cols=71 Identities=31% Similarity=0.408 Sum_probs=62.7
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
++||.++.||+|++++++|.++|++|+.+.+........++.+++|.++||+|+++ |..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~--~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDG--GLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEEC--CEEEEcHHHHHHHhC
Confidence 36899999999999999999999999999987654444478999999999999985 789999999999984
No 93
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.36 E-value=1.9e-12 Score=100.57 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=60.9
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHc-----CCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDIT-----GSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~n-----p~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
.+||.++.++.+++++++|.++|++|+.+.++.+ ++|.+.+ |.++||+|+| +|..|+||.||++||.++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~----~~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA----EDLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH----HHHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHHH
Confidence 4689999999999999999999999999988642 3444444 4899999997 468999999999999999
Q ss_pred cCC
Q 019633 331 YSA 333 (338)
Q Consensus 331 y~~ 333 (338)
|+.
T Consensus 76 ~~~ 78 (79)
T cd03077 76 YNL 78 (79)
T ss_pred cCC
Confidence 873
No 94
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.35 E-value=4e-12 Score=115.13 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=64.1
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHH-----H--HhCCCCceeEEEeCCCCeEEecHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMV-----R--RLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l-----~--~~nP~~qVP~Lvd~n~g~~l~ES~aI~~Y 206 (338)
+++||+++.+++|++||++|+++|++|+.+.++. .. .+++ + +.||.|+||+|++ +|.+|+||.||++|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~--~~-~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE--NG-DAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc--cc-hHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHH
Confidence 4899999999999999999999999999997742 21 2322 1 3799999999999 78999999999999
Q ss_pred HHHhhCC
Q 019633 207 LFQQYGK 213 (338)
Q Consensus 207 L~~~y~~ 213 (338)
|+++|+.
T Consensus 79 La~~~~~ 85 (205)
T PTZ00057 79 LSKKYKI 85 (205)
T ss_pred HHHHcCC
Confidence 9999974
No 95
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.35 E-value=1.9e-12 Score=101.54 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=59.6
Q ss_pred hhccccCChhhHHHHHHHHhcCCceEEEEcCC--CCCC-chHHHhH-----cCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 257 ELFSYENNPYARIVREALCELELPYILQNVGD--GSSR-TKLLVDI-----TGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 257 ~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~--g~~k-~~~~l~~-----np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
+||.+..++.|+++|++|.++|++|+.+.++. ++.. .+++.+. +|.++||+|+| +|..|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 57888889999999999999999999988853 2222 3556532 29999999998 4689999999999999
Q ss_pred hhc
Q 019633 329 QSY 331 (338)
Q Consensus 329 ~~y 331 (338)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 96
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.34 E-value=1.9e-12 Score=115.77 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=64.3
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCC--CC-CCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGD--GS-SRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~--g~-~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~ 332 (338)
++||+...+ .+++++++|.++||+|+.+.++. ++ .+.++|+++||.|+||+|+++ +|.+|+||.+|++||+++|+
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhCc
Confidence 468887765 68899999999999999987753 32 456899999999999999854 47899999999999999996
Q ss_pred C
Q 019633 333 A 333 (338)
Q Consensus 333 ~ 333 (338)
.
T Consensus 79 ~ 79 (201)
T PRK10542 79 D 79 (201)
T ss_pred c
Confidence 4
No 97
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.34 E-value=3.1e-12 Score=119.53 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=63.8
Q ss_pred ccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 261 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 261 ~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
...||||++|+++|.++||+|+.+.++.. .+.++|+++||.|+||+|+| +|.+|+||.+|++||+++|+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~-~~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~ 85 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK-RKPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCP 85 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC-CCCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCC
Confidence 46899999999999999999999998764 45799999999999999998 478999999999999999975
No 98
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.8e-12 Score=118.78 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=70.4
Q ss_pred ccchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHc-CCCcccEEEcCCCCeeeccHHHHHHHHhhhcC
Q 019633 254 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDIT-GSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 254 k~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~n-p~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~ 332 (338)
..++||++-.|||++|++++|.++||+|++++++-.. |.+.|++.| +++|||+|++. |..+.||..|++||+++|.
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn--~k~i~ESliiveYiDe~w~ 84 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHN--GKPICESLIIVEYIDETWP 84 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEEC--CceehhhHHHHHHHHhhcc
Confidence 5689999999999999999999999999999987643 899999999 79999999983 5679999999999999998
Q ss_pred C
Q 019633 333 A 333 (338)
Q Consensus 333 ~ 333 (338)
.
T Consensus 85 ~ 85 (231)
T KOG0406|consen 85 S 85 (231)
T ss_pred C
Confidence 5
No 99
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.5e-12 Score=119.17 Aligned_cols=76 Identities=30% Similarity=0.373 Sum_probs=71.1
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEc--CCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNV--GDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v--~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~ 332 (338)
.+++|++..+|.|++|.+++.++|++|+.+.+ ..|+++.++|+++||+|+||+|+|+ |..++||.||+.||.+.|+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~--~~~l~eS~AI~~Yl~~ky~ 79 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDG--GLTLWESHAILRYLAEKYG 79 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecC--CeEEeeHHHHHHHHHHHcC
Confidence 46799999999999999999999999999855 6888999999999999999999995 8999999999999999997
No 100
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.32 E-value=3.7e-12 Score=114.69 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=67.1
Q ss_pred hhccccCChhhHHHHHHHHhcCCceEEEEcCC---CCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 257 ELFSYENNPYARIVREALCELELPYILQNVGD---GSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 257 ~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~---g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
+||++..||++++||++|.++||+|+.+.++. +..+.++|.++||.++||+|+| +|..|+||.+|++||++.|+.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCCC
Confidence 47888899999999999999999999988864 2456789999999999999998 478999999999999999864
No 101
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.31 E-value=4.3e-12 Score=113.91 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=65.1
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
++||++..||++++|+++|.++|++|+.+.++.. .+.+++.++||.|+||+|+++ +|.+|+||.+|++||+++|+.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~-~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~ 76 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPY-NADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVA 76 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCC-CCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCC
Confidence 4789999999999999999999999999887542 234677888999999999843 478999999999999998853
No 102
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.30 E-value=7.8e-12 Score=95.63 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=57.7
Q ss_pred ccCChhhHHHHHHHHhcCCceEEEEcCCC-CCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 261 YENNPYARIVREALCELELPYILQNVGDG-SSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 261 ~~~sP~~rkVr~aL~Elgi~ye~~~v~~g-~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
...||++++++++|.++|++|+.+.++.. ..+.++|.++||.++||+|++ +|..++||.+|++||.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 35799999999999999999999988643 235689999999999999998 4689999999999984
No 103
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.28 E-value=2.8e-11 Score=93.99 Aligned_cols=74 Identities=22% Similarity=0.440 Sum_probs=64.2
Q ss_pred CCCceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 131 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 131 p~~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
..++++||+.++||+|++++.+|+++|++|+.++++.+.. .+.+.+.++..+||++.. +|..|.++.+|.+||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~--~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR--GRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH--HHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 4468999999999999999999999999999999976432 234556788899999998 8999999999999984
No 104
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.27 E-value=1.1e-11 Score=117.75 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=63.1
Q ss_pred cccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 260 SYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 260 ~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
....||||++|+++|.|+||+|+.+.++.. .+.++|+++||.|+||+|+++ |..|+||.+|++||+++|+.
T Consensus 69 ~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~-~~~~~fl~iNP~GkVPvL~~d--~~~L~ES~aI~~YL~e~~p~ 139 (265)
T PLN02817 69 KLGDCPFCQRVLLTLEEKHLPYDMKLVDLT-NKPEWFLKISPEGKVPVVKLD--EKWVADSDVITQALEEKYPD 139 (265)
T ss_pred cCCCCcHHHHHHHHHHHcCCCCEEEEeCcC-cCCHHHHhhCCCCCCCEEEEC--CEEEecHHHHHHHHHHHCCC
Confidence 345699999999999999999999888664 467899999999999999984 46899999999999999975
No 105
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.25 E-value=1.6e-11 Score=93.13 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=52.0
Q ss_pred CChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 263 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 263 ~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
.||+|++++++|.++||+|+.++++.. .++|.++||+|+++ |..++||.+|++||+++
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~--------~~~p~g~vP~l~~~--g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNP--------WRSPTGKLPFLELN--GEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCc--------ccCCCcccCEEEEC--CEEEcCHHHHHHHHhhC
Confidence 699999999999999999999988653 28999999999984 78999999999999874
No 106
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.22 E-value=7.7e-11 Score=89.51 Aligned_cols=71 Identities=28% Similarity=0.477 Sum_probs=62.4
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
+++||+.++||+|.+++.+|+++|++|+.++++.+. ....+.++++..+||++.. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~--~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI--TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh--hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999999998654 2344556778899999998 7899999999999984
No 107
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.19 E-value=3.7e-11 Score=108.84 Aligned_cols=74 Identities=19% Similarity=0.347 Sum_probs=63.4
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHH--------hHcCCCcccEEEcCCCCeeeccHHHHHHH
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLV--------DITGSKEVPYLIDPNTSTQIGDYKKILSY 326 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l--------~~np~g~VP~L~d~~~g~~l~ES~aI~~Y 326 (338)
+++||.++.++.+++||++|+++|++|+.+.++. .+ ++|+ ++||.|+||+|+| +|.+|+||.||++|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~--~~-~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE--NG-DAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc--cc-hHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHH
Confidence 3889999999999999999999999999987732 22 2443 4899999999998 46899999999999
Q ss_pred HhhhcCC
Q 019633 327 LFQSYSA 333 (338)
Q Consensus 327 L~~~y~~ 333 (338)
|+++|+.
T Consensus 79 La~~~~~ 85 (205)
T PTZ00057 79 LSKKYKI 85 (205)
T ss_pred HHHHcCC
Confidence 9999964
No 108
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.15 E-value=1.1e-10 Score=90.48 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=52.6
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHh
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~ 210 (338)
...|+. .+++|.+++++|+++|++|+.+....+ + ..+|.|+||+|++ +|.+|+||.+|+.||+++
T Consensus 10 ~~~~~~--~~~~~~kv~~~L~elglpye~~~~~~~-----~---~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 10 EQILLP--DNASCLAVQTFLKMCNLPFNVRCRANA-----E---FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CeeecC--CCCCHHHHHHHHHHcCCCcEEEecCCc-----c---ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 355553 468999999999999999999854321 1 2578899999999 889999999999999864
No 109
>PRK10638 glutaredoxin 3; Provisional
Probab=99.09 E-value=3.9e-10 Score=88.23 Aligned_cols=72 Identities=17% Similarity=0.385 Sum_probs=62.7
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
.++||+.++||||++++.+|+++|++|+.++++.+. ..++.+.+++|..+||+|+. +|..+....++.++-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~-~~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA-AKREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH-HHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHH
Confidence 589999999999999999999999999999997643 23455668999999999988 7999999999888744
No 110
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.98 E-value=1.8e-09 Score=83.80 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=65.3
Q ss_pred CcccchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 252 PSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 252 pek~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
...++++|+.+.||+|++++..|.++|++|+.++++... ...++.+++|...||++.. +|..+.++.+|++||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~-~~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDA-RGRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCCh-HHHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 456799999999999999999999999999999997653 3467888899999999998 4788999999999984
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.96 E-value=3.7e-09 Score=77.95 Aligned_cols=70 Identities=20% Similarity=0.418 Sum_probs=61.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~Y 206 (338)
+++||+.++||+|++++.+|.+++++|+.+++..+.. ..+++.+++|..++|+|.. +|..+.++.+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 4789999999999999999999999999999976543 4566767899999999998 79999999888764
No 112
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.95 E-value=2.9e-09 Score=81.05 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=59.2
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~ 205 (338)
.++||+.++||+|++++.+|+++||+|+.+++..+. ..++.+.+++|..+||++.. +|..+..-.++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~-~~~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFP-ERKAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCH-HHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 589999999999999999999999999999998654 34556778899999999998 7888887776654
No 113
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.94 E-value=1.9e-09 Score=83.46 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=49.5
Q ss_pred cCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 262 ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 262 ~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
+.+++|.+++++|.++|+||+.+.+..+. ..+|.|+||+|++ +|.+|.||.+|++||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~-------~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE-------FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc-------ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 46788999999999999999998643221 2567799999998 467999999999999763
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.93 E-value=3.8e-09 Score=78.49 Aligned_cols=71 Identities=20% Similarity=0.423 Sum_probs=58.6
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE--ecHHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM--YESGDIVNYL 207 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l--~ES~aI~~YL 207 (338)
|++||+.++||+|++++.+|++++++|+.++++.+.. ..+.+.+.++...||+|++ +|..+ ++..+|-+||
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~-~~~~~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSA-AREEVLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHH-HHHHHHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHh
Confidence 5899999999999999999999999999999976432 2334557788999999998 57777 7788887776
No 115
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.2e-09 Score=81.57 Aligned_cols=74 Identities=19% Similarity=0.389 Sum_probs=61.4
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCC-CCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~-~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
++++|+.++||||.+++.+|+++|++|+.++++.++. ..++.+.+.+|..+||++++ +|..++.+.++-++...
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHhh
Confidence 5899999999999999999999999999999987653 34566766668999999999 77788877776666543
No 116
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=98.90 E-value=1.4e-09 Score=101.56 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=70.9
Q ss_pred CCCCCceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcC--CCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHH
Q 019633 129 SDSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (338)
Q Consensus 129 ~~p~~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~--~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~Y 206 (338)
+-+...++||+++.+--++|||+++.|+||+|+.++|+ .+++..+. +.++||.+.||||++ +..+|.++..|+.|
T Consensus 21 ~~~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epw-FmrlNp~gevPVl~~--g~~II~d~tqIIdY 97 (325)
T KOG4420|consen 21 HWPRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPW-FMRLNPGGEVPVLIH--GDNIISDYTQIIDY 97 (325)
T ss_pred CCchhcceeeecCcccccceeeeehhhcccccceeeccCccccccCch-heecCCCCCCceEec--CCeecccHHHHHHH
Confidence 33444599999999988999999999999999998875 45555555 449999999999998 78899999999999
Q ss_pred HHHhhCCC
Q 019633 207 LFQQYGKG 214 (338)
Q Consensus 207 L~~~y~~~ 214 (338)
++++|-+.
T Consensus 98 vErtf~ge 105 (325)
T KOG4420|consen 98 VERTFTGE 105 (325)
T ss_pred HHHhhccc
Confidence 99999654
No 117
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.90 E-value=7.9e-09 Score=78.38 Aligned_cols=71 Identities=15% Similarity=0.301 Sum_probs=58.4
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCC-ceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~-qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
++||+.++||+|.+++.+|+++||+|+.++++... ...+.+.+..+.. +||+++. +|..+.+..++.++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~-~~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP-ALREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 78999999999999999999999999999998642 2333444555555 9999998 7899999999988743
No 118
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.89 E-value=5.7e-09 Score=79.18 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=62.6
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
++++|+.+.||+|.+++.+|.+.|++|+.++++.+. ...++.++.+...||++.. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 578999999999999999999999999999997654 4556777889999999987 3678999999999984
No 119
>PRK10638 glutaredoxin 3; Provisional
Probab=98.88 E-value=4.1e-09 Score=82.41 Aligned_cols=72 Identities=11% Similarity=0.295 Sum_probs=63.6
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
.+++|+.+.||||++++.+|.++|++|+.++|+.+...++++.+++|..+||+++. +|..+....++.++-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHH
Confidence 58899999999999999999999999999999876556789999999999999987 3678888888887743
No 120
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.86 E-value=1.4e-08 Score=80.31 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=61.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCCHHHHHHhCCC--CceeEEEeCCCCeEEecHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNYL 207 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~~e~l~~~nP~--~qVP~Lvd~n~g~~l~ES~aI~~YL 207 (338)
++||+.++||+|.+++.+|.++ +++|+.+++..+. ..++.+.+..+. ..||++.. +|..|.++.+|.+|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~-~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG-ISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHH
Confidence 6899999999999999999999 4678888887432 223445566654 69999998 799999999999999
Q ss_pred HHhhC
Q 019633 208 FQQYG 212 (338)
Q Consensus 208 ~~~y~ 212 (338)
.++++
T Consensus 79 ~~~~~ 83 (86)
T TIGR02183 79 KENFD 83 (86)
T ss_pred Hhccc
Confidence 98765
No 121
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.79 E-value=2.8e-08 Score=75.16 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=58.1
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhC-CCCceeEEEeCCCCeEEec--HHHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYE--SGDIVNYLF 208 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~n-P~~qVP~Lvd~n~g~~l~E--S~aI~~YL~ 208 (338)
.++||+.++||+|++++.+|++++++|+.++++.+. ...+++.+++ +...||+++.. +|..+.+ +..|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~-~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDE-GAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCH-hHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 378999999999999999999999999999997653 3345666776 88999999754 6666554 567777764
No 122
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.78 E-value=3.2e-08 Score=77.61 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=63.6
Q ss_pred ceEEEEcCCChhHHHHHHHHHH-----cCCCeEEEEcCCCCCCCHHHHHHhCCC--CceeEEEeCCCCeEEecHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNY 206 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~e-----lgi~ye~~~v~~~~~~~~e~l~~~nP~--~qVP~Lvd~n~g~~l~ES~aI~~Y 206 (338)
.+++|+.++||+|.+++.+|++ .+++|+.++++.+.. ..+.+.+..+. .+||.+.. +|..+.+..+|.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~-~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI-SKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH-HHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHHH
Confidence 4899999999999999999999 799999999975432 23445455554 68999998 89999999999999
Q ss_pred HHHhhC
Q 019633 207 LFQQYG 212 (338)
Q Consensus 207 L~~~y~ 212 (338)
+.+.|+
T Consensus 79 ~~~~~~ 84 (85)
T PRK11200 79 VKENLG 84 (85)
T ss_pred HHHhcc
Confidence 999876
No 123
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.78 E-value=1.8e-08 Score=95.31 Aligned_cols=70 Identities=27% Similarity=0.512 Sum_probs=60.1
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
.++||.|+.||||-|||.+|...||+|+++.|+.- .+..+ +.+-..+||+|.. .|..|.||.+|+.-|+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV---~r~eI-k~SsykKVPil~~--~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV---LRQEI-KWSSYKKVPILLI--RGEQMVDSSVIISLLAT 159 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecch---hhhhc-cccccccccEEEe--ccceechhHHHHHHHHH
Confidence 68999999999999999999999999999999642 34445 5677889999998 57789999999988744
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.78 E-value=3e-08 Score=82.08 Aligned_cols=72 Identities=17% Similarity=0.372 Sum_probs=62.1
Q ss_pred CceEEEEcCCChhHHHHHHHHHHcCC---CeEEEEcCCCC--CCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHH
Q 019633 133 TRLQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGS--IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~elgi---~ye~~~v~~~~--~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~Y 206 (338)
+.+++|+.++||||.+++.+|+++++ +|++++++..+ ...++.+.++++..+||.++. +|..+....++.+.
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~l 89 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLEI 89 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHHH
Confidence 57999999999999999999999999 89999998532 234677878899999999999 78999998888773
No 125
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.8e-09 Score=92.31 Aligned_cols=76 Identities=17% Similarity=0.315 Sum_probs=65.4
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCCC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 334 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~~ 334 (338)
++||-|+.||||.++|+....++||++.+.+..+... .-.++-|+.|||+|+-+ +|..|.||.+|+.|+++.++.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG~KqVPiL~Ke-dg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIGQKQVPILQKE-DGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCccc--ChhhhhcccccceEEcc-ccccchhhhHHHHHHHHhcCch
Confidence 4789999999999999999999999999887665333 34678899999999954 6899999999999999998743
No 126
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.76 E-value=2.6e-08 Score=73.91 Aligned_cols=63 Identities=14% Similarity=0.397 Sum_probs=52.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEec
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~E 199 (338)
.+++|+..+||+|++++.+|.+++++|..++++.+. ...+++.+++|.++||+|++ +|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~-~~~~~~~~~~~~~~vP~i~~--~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDP-EALEELKKLNGYRSVPVVVI--GDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCH-HHHHHHHHHcCCcccCEEEE--CCEEEec
Confidence 378999999999999999999999999999997643 33455667889999999998 5555543
No 127
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.75 E-value=1.8e-08 Score=74.83 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=62.7
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeee--ccHHHHHHHHh
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQI--GDYKKILSYLF 328 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l--~ES~aI~~YL~ 328 (338)
|+++|..+.||+|++++..|.+.+++|+.++++.+....+++.+.+|...||+++++ |..+ ++..+|.+||.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~~~g~~~~~i~~~i~ 74 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKIIVGFDPEKLDQLLE 74 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEEEeeCCHHHHHHHhC
Confidence 578999999999999999999999999999998776667889999999999999985 4444 88888888873
No 128
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.74 E-value=6.5e-08 Score=78.71 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=62.0
Q ss_pred CCCceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCC--CHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHH
Q 019633 131 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIR--HREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (338)
Q Consensus 131 p~~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~--~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL 207 (338)
.++++++|+.++||||.+++.+|.++|++|++++++..... .++.+.++++..+||.+.. +|..+...+++.+..
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMALH 82 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHHH
Confidence 34689999999999999999999999999999999864321 2334556678899999998 789999988888753
No 129
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.74 E-value=4.6e-08 Score=75.27 Aligned_cols=72 Identities=13% Similarity=0.303 Sum_probs=60.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
++||+.++||+|.+++.+|+++|++|+.++++.+. ...+.+.+..+...||+++. +|..+....++.++-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~-~~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP-ALRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH-HHHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999998643 33445657778899999998 78899998888877544
No 130
>PLN02907 glutamate-tRNA ligase
Probab=98.73 E-value=4.7e-08 Score=104.39 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=71.9
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
++||..+.++ +.++.++|+++|++|+++. .+|.++||+|+++ +|..|+||.||++||++.|+..
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~--------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP--------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee--------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCCc
Confidence 7899888654 5678999999999999864 2589999999964 7889999999999999999876
Q ss_pred CCCCCCHHHHHHHHhhcchhh
Q 019633 215 RSPSTGLLESTLITGWMPTIF 235 (338)
Q Consensus 215 ~~p~~~~~e~a~~~~Wl~~~~ 235 (338)
.+.+.+..+++++.+|+.+..
T Consensus 67 ~L~p~d~~erAqV~qWL~~~~ 87 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYAP 87 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 666668888999999988763
No 131
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.72 E-value=6.2e-08 Score=76.05 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=54.4
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~ 208 (338)
+++||+.++||+|.++|.+|+++||+|+.++++.+. ...+.+ ..+|..+||+|+..+.-..=|+-..|-+..-
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~-~~~~~~-~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~~ 74 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP-EAAETL-RAQGFRQLPVVIAGDLSWSGFRPDMINRLHP 74 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH-HHHHHH-HHcCCCCcCEEEECCEEEecCCHHHHHHHHH
Confidence 589999999999999999999999999999998642 233445 3468899999998321123455555555443
No 132
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.72 E-value=6.6e-08 Score=74.29 Aligned_cols=74 Identities=18% Similarity=0.360 Sum_probs=63.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCC--CCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~--~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
++++|+.++||+|.+++.+|.+++++|+.++++..+. ..++++.++++..++|++.. +|..+.+..+|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 3789999999999999999999999999999876432 12445667888889999998 78999999999998765
No 133
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.71 E-value=7.3e-08 Score=78.12 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=63.4
Q ss_pred CCCceEEEEc-----CCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHH
Q 019633 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (338)
Q Consensus 131 p~~~l~LY~~-----~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~ 205 (338)
.+++++||.. ++||||.+++.+|.++|++|+.+++..+ +..++++.++++..+||.+.. +|..+....++.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHH
Confidence 3468999987 8999999999999999999999999754 445667778888999999998 7889999888887
Q ss_pred HHH
Q 019633 206 YLF 208 (338)
Q Consensus 206 YL~ 208 (338)
...
T Consensus 87 l~~ 89 (97)
T TIGR00365 87 MYQ 89 (97)
T ss_pred HHH
Confidence 543
No 134
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=98.70 E-value=8.4e-09 Score=96.51 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=70.4
Q ss_pred ccchhccccCChhhHHHHHHHHhcCCceEEEEc--CCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhc
Q 019633 254 KKLELFSYENNPYARIVREALCELELPYILQNV--GDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSY 331 (338)
Q Consensus 254 k~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v--~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y 331 (338)
..+.||.++.|=.+++||+++.|+||+|+.++| ..|+++.++|+++||.+.||||+++ ...|.|+..|++|++.+|
T Consensus 25 e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g--~~II~d~tqIIdYvErtf 102 (325)
T KOG4420|consen 25 ESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHG--DNIISDYTQIIDYVERTF 102 (325)
T ss_pred hcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecC--CeecccHHHHHHHHHHhh
Confidence 348899999888899999999999999999888 4788999999999999999999984 468999999999999988
Q ss_pred CC
Q 019633 332 SA 333 (338)
Q Consensus 332 ~~ 333 (338)
-+
T Consensus 103 ~g 104 (325)
T KOG4420|consen 103 TG 104 (325)
T ss_pred cc
Confidence 44
No 135
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.7e-08 Score=88.30 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=75.7
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCC-CCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhC
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~-~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~ 212 (338)
..+|+.|.....|..+|+++...|++||.+.+..++ | +.++...|.||+|+|.. +|..|.+|.||++||+++||
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w---~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAW---EELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccch---hhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHhC
Confidence 579999999999999999999999999999998776 3 23444579999999988 79999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHhhcchh
Q 019633 213 KGRSPSTGLLESTLITGWMPTI 234 (338)
Q Consensus 213 ~~~~p~~~~~e~a~~~~Wl~~~ 234 (338)
-. +.+..|.+.+.+..+..
T Consensus 78 l~---Gkt~~E~a~vD~i~d~~ 96 (206)
T KOG1695|consen 78 LA---GKTEEEEAWVDMIVDQF 96 (206)
T ss_pred cC---CCCHHHHHHHHHHHHhh
Confidence 43 33556666555544443
No 136
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.69 E-value=3.8e-08 Score=74.91 Aligned_cols=68 Identities=25% Similarity=0.284 Sum_probs=58.6
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHH
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKIL 324 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~ 324 (338)
.+++|+.+.||+|++++.+|.++||+|+.+++..+....+++.+++|..+||++..+ |..+..-.++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~--~~~iGg~~~~~ 69 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFN--EKLVGGLTDLK 69 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEEC--CEEEeCHHHHH
Confidence 478999999999999999999999999999998877778899999999999999874 45565555443
No 137
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.67 E-value=1.1e-07 Score=73.16 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=50.1
Q ss_pred CChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHh
Q 019633 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (338)
Q Consensus 142 ~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~ 210 (338)
.+|+|.++...|...|++|+++.... . ..+|+|++|+|++ +|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-~--------~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-P--------WRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-C--------CCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 47999999999999999999885432 1 3578999999999 799999999999999874
No 138
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.66 E-value=1.3e-07 Score=75.39 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCceEEEEc-----CCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHH
Q 019633 132 PTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (338)
Q Consensus 132 ~~~l~LY~~-----~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~Y 206 (338)
++++++|.. ++||||.+++.+|+++|++|+.+++..+ ...++.+.+.++..+||++.. +|..+....++.++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~l 83 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKEM 83 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHHH
Confidence 468999987 6999999999999999999999999754 445667778888999999998 79999999988885
Q ss_pred H
Q 019633 207 L 207 (338)
Q Consensus 207 L 207 (338)
.
T Consensus 84 ~ 84 (90)
T cd03028 84 H 84 (90)
T ss_pred H
Confidence 4
No 139
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.66 E-value=5.7e-08 Score=76.25 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=62.1
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
++++|+.+.||+|.+++..|.++||+|+.++++.++...+++ ..+|..+||+++.++.-+..|+-..|.+.....
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~-~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~~~~ 76 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETL-RAQGFRQLPVVIAGDLSWSGFRPDMINRLHPAP 76 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHH-HHcCCCCcCEEEECCEEEecCCHHHHHHHHHhh
Confidence 578999999999999999999999999999998754333444 557999999999876657788999988876553
No 140
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.66 E-value=3.9e-08 Score=72.02 Aligned_cols=60 Identities=20% Similarity=0.482 Sum_probs=51.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l 197 (338)
++||+.++||+|.+++.+|+++|++|+.++++... ..++.+++..+..++|++.. +|..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~-~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE-EAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH-HHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch-hHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 58999999999999999999999999999998653 45667777778999999998 67543
No 141
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.65 E-value=7.1e-08 Score=73.37 Aligned_cols=54 Identities=17% Similarity=0.406 Sum_probs=45.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
++||+.++||+|++++.+|+++|++|+.++++.+. ...+.+. ..+..+||+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~-~~~~~~~-~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP-EAIDYVK-AQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH-HHHHHHH-HcCCcccCEEEE
Confidence 58999999999999999999999999999998643 3345553 457889999998
No 142
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.64 E-value=4.7e-08 Score=72.46 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=57.0
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHH
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 325 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~ 325 (338)
+++|+...||+|++++.+|.+++++|..++++.+....+++.+.+|.++||+|++++.-+..++...|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCHHHHHh
Confidence 6789999999999999999999999999999876556678889999999999998653334445544443
No 143
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.64 E-value=7.3e-08 Score=70.94 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=61.7
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHH
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 326 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~Y 326 (338)
++++|..+.||+|++++.+|.+++++|+.+++..+....+++.+++|..++|++.. +|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 36789999999999999999999999999999877666788899999999999987 46788899888764
No 144
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.57 E-value=3.6e-07 Score=70.25 Aligned_cols=73 Identities=18% Similarity=0.410 Sum_probs=60.8
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCC--eEEEEcCCCCC--CCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLS--VEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~--ye~~~v~~~~~--~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
+++|+.++||+|.+++.+|++++++ |++++++.... ...+++.+.++..++|.+.. +|..+.++.+++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 99999876432 22345666778889999998 79999999999988754
No 145
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.54 E-value=1.9e-07 Score=70.69 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=60.6
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCC-cccEEEcCCCCeeeccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSK-EVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g-~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
+++|+.+.||+|.+++..|.+++++|+.+++.......+++.++.+.. .||+++. +|..+....++.++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 679999999999999999999999999999987655667788887776 9999987 3677888888887743
No 146
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.54 E-value=1.6e-07 Score=71.34 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=54.6
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCC-CeeeccHHHHHH
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNT-STQIGDYKKILS 325 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~-g~~l~ES~aI~~ 325 (338)
+++|+.+.||+|++++..|.++|++|+.+++..+....+++ +..|...||+++.+++ -+..|+...|.+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~-~~~g~~~vP~v~~~g~~~~~G~~~~~~~~ 70 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYV-KAQGFRQVPVIVADGDLSWSGFRPDKLKA 70 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHH-HHcCCcccCEEEECCCcEEeccCHHHHHh
Confidence 47899999999999999999999999999998764444444 4568889999988432 356677777653
No 147
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.52 E-value=3.2e-07 Score=71.85 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=65.6
Q ss_pred cchhccccCChhhHHHHHHHHh-----cCCceEEEEcCCCCCCchHHHhHcCC--CcccEEEcCCCCeeeccHHHHHHHH
Q 019633 255 KLELFSYENNPYARIVREALCE-----LELPYILQNVGDGSSRTKLLVDITGS--KEVPYLIDPNTSTQIGDYKKILSYL 327 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~E-----lgi~ye~~~v~~g~~k~~~~l~~np~--g~VP~L~d~~~g~~l~ES~aI~~YL 327 (338)
.+++|+.+.||+|.+++..|.+ .+++|+.+++.......+++.++.+. ..||++.. +|..+.....|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHHHH
Confidence 4789999999999999999999 79999999997654456678777765 68999987 478899999999999
Q ss_pred hhhcC
Q 019633 328 FQSYS 332 (338)
Q Consensus 328 ~~~y~ 332 (338)
.++|+
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 99886
No 148
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.50 E-value=3.5e-07 Score=72.23 Aligned_cols=76 Identities=12% Similarity=0.264 Sum_probs=63.3
Q ss_pred chhccccCChhhHHHHHHHHhc-----CCceEEEEcCCCCCCchHHHhHcCC--CcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCEL-----ELPYILQNVGDGSSRTKLLVDITGS--KEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~El-----gi~ye~~~v~~g~~k~~~~l~~np~--g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
+++|+.+.||||.+++..|.++ +++|+.+++.......+++.++.+. ..||++.. +|..+.++.+|.+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHHH
Confidence 5789999999999999999998 4679999987543345678888876 78999987 3678999999999999
Q ss_pred hhcCC
Q 019633 329 QSYSA 333 (338)
Q Consensus 329 ~~y~~ 333 (338)
++|+-
T Consensus 80 ~~~~~ 84 (86)
T TIGR02183 80 ENFDI 84 (86)
T ss_pred hcccc
Confidence 88763
No 149
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.48 E-value=3.3e-07 Score=69.17 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=59.0
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHc-CCCcccEEEcCCCCeee--ccHHHHHHHHh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDIT-GSKEVPYLIDPNTSTQI--GDYKKILSYLF 328 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~n-p~g~VP~L~d~~~g~~l--~ES~aI~~YL~ 328 (338)
+++|....||+|++++..|.+++++|+.++++.+....+.+.+++ +...||+++.+ +|..+ .+...|.++|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 678999999999999999999999999999987766667778887 99999999754 34444 46667777775
No 150
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.45 E-value=4.2e-07 Score=69.89 Aligned_cols=72 Identities=11% Similarity=0.259 Sum_probs=62.0
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
+++|+.+.||+|.+++..|.++|++|+.++++......+++.++++...||+++.+ |..+....++.++-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~--g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIG--DVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEEC--CEEEcChHHHHHHHHc
Confidence 46899999999999999999999999999998776677889999999999999873 6678888887776543
No 151
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.42 E-value=1.2e-06 Score=79.91 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=65.4
Q ss_pred CCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCCCCCC
Q 019633 141 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPS 218 (338)
Q Consensus 141 ~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~~~p~ 218 (338)
..||||+++-+.|.+++++|.+..|+.. +.+++++.+.|.+++|+|.. +|..+.||..|.++|.+.|+.+..+.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~--~kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS--RKPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPT 92 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC--CCcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcc
Confidence 4699999999999999999999988753 46677879999999999999 78999999999999999999875443
No 152
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6.8e-07 Score=69.99 Aligned_cols=70 Identities=16% Similarity=0.335 Sum_probs=54.1
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCC-CchHHHhHc-CCCcccEEEcCCCCeeeccHHHHHHH
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSS-RTKLLVDIT-GSKEVPYLIDPNTSTQIGDYKKILSY 326 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~-k~~~~l~~n-p~g~VP~L~d~~~g~~l~ES~aI~~Y 326 (338)
++++|+.+.||||.+++.+|.++|++|+.+++..++. ...++++.. |..+||+++.++ ..++-+..+.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~--~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG--KHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC--EEEeCcccHHHH
Confidence 4789999999999999999999999999999987663 445665555 999999999853 344443343433
No 153
>PTZ00062 glutaredoxin; Provisional
Probab=98.33 E-value=1.4e-05 Score=73.48 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=104.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCC---eEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE-----ecHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM-----YESGDIVNY 206 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~---ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l-----~ES~aI~~Y 206 (338)
+..|.-+|||-|+.+..+|.++--+ +.+..|+.+ ..-..||.++-=.+|..+ .+...+..+
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~ 89 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSF 89 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEECCEEEeeeeCCCHHHHHHH
Confidence 3344477999999999888877543 445556543 234478877532255432 356778888
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcchhhhccccccccccCCCCCCcccchhccc-----cCChhhHHHHHHHHhcCCce
Q 019633 207 LFQQYGKGRSPSTGLLESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSY-----ENNPYARIVREALCELELPY 281 (338)
Q Consensus 207 L~~~y~~~~~p~~~~~e~a~~~~Wl~~~~~~~~g~~~~~~~~~~~pek~l~Ly~~-----~~sP~~rkVr~aL~Elgi~y 281 (338)
+.+.++... . ..+..++..+ +..+++.+|.. +.||||++++..|.+.+++|
T Consensus 90 ~~~~~~~~~----~----~~~~~~v~~l----------------i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y 145 (204)
T PTZ00062 90 IRGWAQKGS----S----EDTVEKIERL----------------IRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKY 145 (204)
T ss_pred HHHHcCCCC----H----HHHHHHHHHH----------------HhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCE
Confidence 877665321 1 1122222222 22234445543 58999999999999999999
Q ss_pred EEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 019633 282 ILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 327 (338)
Q Consensus 282 e~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL 327 (338)
+.+++..+...++++.++++...||.+.. +|..+.....+.+..
T Consensus 146 ~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 146 ETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELIGGHDIIKELY 189 (204)
T ss_pred EEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHHH
Confidence 99999877666788888999999999987 366677777766643
No 154
>PRK10824 glutaredoxin-4; Provisional
Probab=98.30 E-value=3.1e-06 Score=71.02 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=63.7
Q ss_pred CCceEEEEc-----CCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHH
Q 019633 132 PTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (338)
Q Consensus 132 ~~~l~LY~~-----~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~Y 206 (338)
.+++++|.. ++||||++++.+|..+|++|..+++..+ ..-++.+.+.++..+||-+.. +|..+..++++.+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~l 90 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIEM 90 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHH
Confidence 468999998 4899999999999999999999998754 345677878889999999998 89999999988886
Q ss_pred HH
Q 019633 207 LF 208 (338)
Q Consensus 207 L~ 208 (338)
..
T Consensus 91 ~~ 92 (115)
T PRK10824 91 YQ 92 (115)
T ss_pred HH
Confidence 43
No 155
>PHA03050 glutaredoxin; Provisional
Probab=98.24 E-value=2e-06 Score=71.23 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=61.0
Q ss_pred CCcccchhccccCChhhHHHHHHHHhcCC---ceEEEEcCCCC---CCchHHHhHcCCCcccEEEcCCCCeeeccHHHHH
Q 019633 251 PPSKKLELFSYENNPYARIVREALCELEL---PYILQNVGDGS---SRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKIL 324 (338)
Q Consensus 251 ~pek~l~Ly~~~~sP~~rkVr~aL~Elgi---~ye~~~v~~g~---~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~ 324 (338)
.....+++|+.+.||||.+++..|.++++ +|+.++++... ..++++.++++...||.+..+ |..+....++.
T Consensus 10 i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~--g~~iGG~ddl~ 87 (108)
T PHA03050 10 LANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFG--KTSIGGYSDLL 87 (108)
T ss_pred hccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEEC--CEEEeChHHHH
Confidence 34567999999999999999999999999 89999997632 336788999999999999874 56677777766
Q ss_pred HH
Q 019633 325 SY 326 (338)
Q Consensus 325 ~Y 326 (338)
+.
T Consensus 88 ~l 89 (108)
T PHA03050 88 EI 89 (108)
T ss_pred HH
Confidence 63
No 156
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.23 E-value=1e-06 Score=64.42 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=50.7
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 311 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~ 311 (338)
+++|+.++||+|.+++..|.++|++|+.++++..+..++++.+.++...||++..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~ 56 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFID 56 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEET
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEEC
Confidence 46899999999999999999999999999998876677888888899999999873
No 157
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.20 E-value=5.6e-06 Score=75.62 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=63.2
Q ss_pred ccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCCCC
Q 019633 261 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSASP 335 (338)
Q Consensus 261 ~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~~~ 335 (338)
...||||+++-+.|.+++++|.+..|+- ..+.++|+++.|.+++|+|..+ +.+..||..|.++|+++|+...
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~-~~kp~~f~~~sp~~~~P~l~~d--~~~~tDs~~Ie~~Lee~l~~p~ 89 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDL-SRKPEWFLDISPGGKPPVLKFD--EKWVTDSDKIEEFLEEKLPPPK 89 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeec-CCCcHHHHhhCCCCCCCeEEeC--CceeccHHHHHHHHHHhcCCCC
Confidence 3579999999999999999999988765 3477899999999999999984 5788999999999999998754
No 158
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.19 E-value=3.7e-06 Score=68.15 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=60.8
Q ss_pred Ccccchhccc-----cCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHH
Q 019633 252 PSKKLELFSY-----ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 326 (338)
Q Consensus 252 pek~l~Ly~~-----~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~Y 326 (338)
.+.++.+|.. +.||||.+++..|.++|++|+.+++..+...+.++.++++...||.+..+ |..+....++.+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~--g~~iGG~ddl~~l 87 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK--GEFVGGCDIIMEM 87 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC--CEEEeChHHHHHH
Confidence 4456778864 78999999999999999999999997766667788889999999999874 5667777777665
Q ss_pred H
Q 019633 327 L 327 (338)
Q Consensus 327 L 327 (338)
.
T Consensus 88 ~ 88 (97)
T TIGR00365 88 Y 88 (97)
T ss_pred H
Confidence 4
No 159
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.9e-06 Score=77.94 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=63.5
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
..+|+.|.....+..+|+.+...|++||.+.+..+.. -.++....|.||||+|.. +|..|.+|.||++||+.+||-
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~gl 78 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKFGL 78 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHhCc
Confidence 3578888889999999999999999999999866532 233344489999999987 489999999999999999973
No 160
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.18 E-value=5.1e-06 Score=63.87 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=49.2
Q ss_pred CChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 263 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 263 ~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
.+|+|.++...|...|++|+.+.... ...+|.|++|+|+++ |..+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n--------~~~sp~gkLP~l~~~--~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN--------PWRSPTGKLPALLTS--GTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC--------CCCCCCCccCEEEEC--CEEecChHHHHHHHHHc
Confidence 57999999999999999998875332 145689999999984 78999999999999864
No 161
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.18 E-value=4.3e-06 Score=66.53 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=63.3
Q ss_pred Ccccchhccc-----cCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHH
Q 019633 252 PSKKLELFSY-----ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 326 (338)
Q Consensus 252 pek~l~Ly~~-----~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~Y 326 (338)
.+.++.+|.. +.||||.+++..|.++|++|+.+++..+...++++.++++..+||++.. +|..+.....+.++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~l 83 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKEM 83 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHHH
Confidence 4466778865 5899999999999999999999999877666788889999999999987 46788888888876
Q ss_pred Hh
Q 019633 327 LF 328 (338)
Q Consensus 327 L~ 328 (338)
..
T Consensus 84 ~~ 85 (90)
T cd03028 84 HE 85 (90)
T ss_pred HH
Confidence 43
No 162
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.18 E-value=6.1e-06 Score=67.09 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=60.8
Q ss_pred CCcccchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCC---chHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 019633 251 PPSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSR---TKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 327 (338)
Q Consensus 251 ~pek~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k---~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL 327 (338)
+.+.++++|+.+.||||.+++.+|.++|++|+.++|+..+.. .+++.++++...||.+..+ |..+.....+.+..
T Consensus 5 i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~--g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 5 VSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG--GKLVGGLENVMALH 82 (99)
T ss_pred hccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC--CEEEcCHHHHHHHH
Confidence 456779999999999999999999999999999999865442 3456777899999999873 56677777766643
No 163
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.17 E-value=2.9e-06 Score=80.48 Aligned_cols=70 Identities=27% Similarity=0.336 Sum_probs=57.1
Q ss_pred ccchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 254 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 254 k~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
..+.||.|+.||||.+||.+|...||+|+++.|+.-. +.+ ++-+--.+||+|... |..|.||.+|+.-|+
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~--r~e-Ik~SsykKVPil~~~--Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL--RQE-IKWSSYKKVPILLIR--GEQMVDSSVIISLLA 158 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh--hhh-ccccccccccEEEec--cceechhHHHHHHHH
Confidence 4689999999999999999999999999999986531 211 344567899999873 567999999998774
No 164
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.15 E-value=8.7e-06 Score=62.38 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=60.8
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCC---chHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSR---TKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k---~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
+.+|+.+.||+|.+++..|.+++++|+.++++..... ..++.++++...||++.. +|..+.+...|.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 6789999999999999999999999999988765432 346778889999999987 46789999999998765
No 165
>PTZ00062 glutaredoxin; Provisional
Probab=97.98 E-value=3.1e-05 Score=71.14 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCceEEEEc-----CCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHH
Q 019633 132 PTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (338)
Q Consensus 132 ~~~l~LY~~-----~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~Y 206 (338)
.+++.||.. +.||||++++.+|+++|++|+.+++..+ ...++.++++++..+||.+.. +|..+...+.+.+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~~l 188 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED-PDLREELKVYSNWPTYPQLYV--NGELIGGHDIIKEL 188 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHH
Confidence 468999988 6899999999999999999999999864 345677878888899999998 79889888777764
No 166
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=5.5e-05 Score=62.37 Aligned_cols=75 Identities=19% Similarity=0.432 Sum_probs=63.8
Q ss_pred CCCceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCC--CCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHH
Q 019633 131 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (338)
Q Consensus 131 p~~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~--~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL 207 (338)
.++++++|+..+||||.+++.+|..+++.+.++.++..+. .-+..+.++.+..+||.+.. +|..+....+|..+-
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMALH 88 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHHH
Confidence 4578999999999999999999999999999999987532 23445666788889999999 899999999998873
No 167
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=97.96 E-value=2.7e-05 Score=73.49 Aligned_cols=72 Identities=22% Similarity=0.442 Sum_probs=62.4
Q ss_pred CceEEEEcC-------CChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHH
Q 019633 133 TRLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (338)
Q Consensus 133 ~~l~LY~~~-------~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~ 205 (338)
..+-||.|+ .||||.||-..|...+||||.+++..- ..+.+|++|.++. +|..+.+|.-|+.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~---------~rSr~G~lPFIEL--NGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK---------RRSRNGTLPFIEL--NGEHIADSDLIED 112 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce---------eeccCCCcceEEe--CCeeccccHHHHH
Confidence 357799998 478999999999999999999987531 3567899999999 8999999999999
Q ss_pred HHHHhhCCCC
Q 019633 206 YLFQQYGKGR 215 (338)
Q Consensus 206 YL~~~y~~~~ 215 (338)
+|.++++-..
T Consensus 113 ~L~~hf~~~~ 122 (281)
T KOG4244|consen 113 RLRKHFKIPD 122 (281)
T ss_pred HHHHHcCCCC
Confidence 9999998655
No 168
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.89 E-value=4.2e-05 Score=77.08 Aligned_cols=70 Identities=11% Similarity=0.284 Sum_probs=55.9
Q ss_pred CceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHh--------CCCCceeEEEeCCCCeEEecHHHHH
Q 019633 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRL--------GGKEQFPFLIDPNTGVSMYESGDIV 204 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~--------nP~~qVP~Lvd~n~g~~l~ES~aI~ 204 (338)
+.+++|+.++||+|.+++.+|++.||+|+.++++++. ...+...++ .+..+||++.. +|..+..-.++.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~l~ 78 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDV-KRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDNLM 78 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCh-hHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchHHH
Confidence 3589999999999999999999999999999998543 233333232 46779999998 788888887776
Q ss_pred H
Q 019633 205 N 205 (338)
Q Consensus 205 ~ 205 (338)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 6
No 169
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.85 E-value=6.7e-05 Score=57.48 Aligned_cols=72 Identities=25% Similarity=0.424 Sum_probs=58.6
Q ss_pred chhccccCChhhHHHHHHHHhcCCc--eEEEEcCCCCCC---chHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 256 LELFSYENNPYARIVREALCELELP--YILQNVGDGSSR---TKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~--ye~~~v~~g~~k---~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
+.+|.-+.||+|.+++.+|.+++++ |+.++++..... .+.+.+..+...||.+.. +|..+..+..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 3578889999999999999999999 999988764322 234677788899999987 46789999999888754
No 170
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.80 E-value=0.0001 Score=64.38 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=57.4
Q ss_pred eEEEEcC------CChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCC----CceeEEEeCCCCeEEecHHHHH
Q 019633 135 LQLFEFE------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK----EQFPFLIDPNTGVSMYESGDIV 204 (338)
Q Consensus 135 l~LY~~~------~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~----~qVP~Lvd~n~g~~l~ES~aI~ 204 (338)
++||... .||+|.+|+.+|+.++|+|+.++++.+. ..++++.++.+. .+||.+.. +|..|....++.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~-~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del~ 78 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS-GFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEVL 78 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHHH
Confidence 6899998 8999999999999999999999998643 345556566544 79999998 799999988888
Q ss_pred HH
Q 019633 205 NY 206 (338)
Q Consensus 205 ~Y 206 (338)
+.
T Consensus 79 ~L 80 (147)
T cd03031 79 RL 80 (147)
T ss_pred HH
Confidence 74
No 171
>PLN02907 glutamate-tRNA ligase
Probab=97.73 E-value=4.8e-05 Score=81.63 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=52.2
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSA 333 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~ 333 (338)
++||..+.++ +.++.++|.++|++|+.+. .+|.|+||+|+++ +|..|+||.||++||++.|+.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~-------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~ 65 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP-------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASL 65 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee-------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCC
Confidence 5678777665 4468999999999999865 2589999999964 478999999999999999854
No 172
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.60 E-value=8.9e-05 Score=61.38 Aligned_cols=46 Identities=15% Similarity=0.421 Sum_probs=37.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG 181 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP 181 (338)
++||+.++||+|++++..|++.|++|+.+++..+. ...+.+.++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~-~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEP-PSKEELKKWLE 46 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCc-ccHHHHHHHHH
Confidence 58999999999999999999999999999997643 34444544433
No 173
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.58 E-value=0.00025 Score=52.42 Aligned_cols=59 Identities=17% Similarity=0.398 Sum_probs=44.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEec
Q 019633 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~E 199 (338)
.+++|..++||+|.+++.+|+++ ++++..++++.. ++ +.+..+...+|.++. +|..++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~----~~-l~~~~~i~~vPti~i--~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF----PD-LADEYGVMSVPAIVI--NGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC----Hh-HHHHcCCcccCEEEE--CCEEEEe
Confidence 47899999999999999999887 567766766532 23 335566778999998 6766653
No 174
>PRK10824 glutaredoxin-4; Provisional
Probab=97.53 E-value=0.00018 Score=60.35 Aligned_cols=73 Identities=10% Similarity=0.110 Sum_probs=59.5
Q ss_pred cccchhccc-----cCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 019633 253 SKKLELFSY-----ENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 327 (338)
Q Consensus 253 ek~l~Ly~~-----~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL 327 (338)
+.++.+|.. +.||||.+++..|..+|++|..+++..+...+.++.++++...||.+.. +|..+..+..+.+..
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIEMY 91 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHHH
Confidence 445666654 4899999999999999999999999876566778888999999999987 467777777777753
No 175
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.44 E-value=0.00027 Score=60.36 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=33.1
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCC
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~ 169 (338)
|++||+.++||+|++++..|++.||+|+.+++..+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~ 36 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSP 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCCh
Confidence 589999999999999999999999999999997543
No 176
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.38 E-value=0.0004 Score=57.72 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=32.6
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCC
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKG 168 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~ 168 (338)
|++||+.+.||+|++++..|++.|++|+++++...
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~ 35 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQ 35 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCC
Confidence 58999999999999999999999999999999654
No 177
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.35 E-value=0.00047 Score=56.12 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=36.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 180 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~n 180 (338)
++||+.++||+|++++..|++.|++|+++++.... ...+.+.++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~-~~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEP-PTKEELKELL 45 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCC-CCHHHHHHHH
Confidence 57999999999999999999999999999997543 3444454544
No 178
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.21 E-value=0.00081 Score=58.78 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=55.8
Q ss_pred chhcccc------CChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCC----CcccEEEcCCCCeeeccHHHHHH
Q 019633 256 LELFSYE------NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGS----KEVPYLIDPNTSTQIGDYKKILS 325 (338)
Q Consensus 256 l~Ly~~~------~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~----g~VP~L~d~~~g~~l~ES~aI~~ 325 (338)
+.+|... .+|+|.+++.+|..++|+|+.++|..+...++++.++.+. ..||.+..+ |..|....++.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~--G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVD--GRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEEC--CEEEecHHHHHH
Confidence 4577766 7999999999999999999999998766667788887765 789999873 566766666666
Q ss_pred H
Q 019633 326 Y 326 (338)
Q Consensus 326 Y 326 (338)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 4
No 179
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.12 E-value=0.0012 Score=56.52 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=35.6
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMV 176 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l 176 (338)
|+++|+.++|+.|++++..|++.|++|+.+++....+ ..+.+
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~-s~~el 42 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSM-TVDEL 42 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcC-CHHHH
Confidence 5899999999999999999999999999999976433 33444
No 180
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.08 E-value=0.0011 Score=66.90 Aligned_cols=68 Identities=13% Similarity=0.356 Sum_probs=51.3
Q ss_pred ccchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHH---------hHcCCCcccEEEcCCCCeeeccHHHHH
Q 019633 254 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLV---------DITGSKEVPYLIDPNTSTQIGDYKKIL 324 (338)
Q Consensus 254 k~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l---------~~np~g~VP~L~d~~~g~~l~ES~aI~ 324 (338)
+.+++|+.+.||+|.+++..|.+.||+|+.++|+++.. ..++. .++|...||++..++ ..+..-..+.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~-~~~~~~~~~~~~~~~~~g~~tvP~ifi~~--~~igGf~~l~ 78 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVK-RAEFYAEVNKNILLVEEHIRTVPQIFVGD--VHIGGYDNLM 78 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChh-HHHHHHHHhhccccccCCCCccCeEEECC--EEEeCchHHH
Confidence 45889999999999999999999999999999986542 23332 335788999998753 4444444443
No 181
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.07 E-value=0.0015 Score=56.02 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=33.3
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCC
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~ 169 (338)
|++||+.+.|+.|++++..|++.|++|+++++....
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 589999999999999999999999999999997643
No 182
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.05 E-value=0.00056 Score=56.61 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=40.5
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCccc
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVP 306 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP 306 (338)
+++|+.+.||+|++++..|.+.|++|+.+++.......+++.++-....+|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~ 51 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSGLP 51 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcCCC
Confidence 578999999999999999999999999999977666665555544433333
No 183
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.02 E-value=0.0013 Score=54.80 Aligned_cols=34 Identities=9% Similarity=0.365 Sum_probs=31.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG 168 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~ 168 (338)
++||+.++||+|++++..|++.|++|+++++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGED 34 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCC
Confidence 5799999999999999999999999999998653
No 184
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.86 E-value=0.0052 Score=47.29 Aligned_cols=56 Identities=27% Similarity=0.345 Sum_probs=48.6
Q ss_pred CChhHHHHHHHHHHcCCC---eEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHH
Q 019633 142 ACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (338)
Q Consensus 142 ~cP~c~kVr~~L~elgi~---ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL 207 (338)
-+|-|.++.+.|+..+.+ |+++....- .++|.+++|+|++ .++..+.+-.+|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~---------~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP---------WLSPTGELPALID-SGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC---------CcCCCCCCCEEEE-CCCcEEECHHHHHHhh
Confidence 378999999999999999 888876531 2689999999999 3788999999999998
No 185
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.78 E-value=0.0015 Score=55.85 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=32.9
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGS 290 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~ 290 (338)
|+++|+.+.||+|++++..|.+.||+|+.+++....
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~ 36 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSP 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCCh
Confidence 588999999999999999999999999999996544
No 186
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.71 E-value=0.002 Score=53.49 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=32.9
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGS 290 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~ 290 (338)
|+++|+.+.|++|++++..|.+.|++|+.+++....
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 578999999999999999999999999999996554
No 187
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.64 E-value=0.0048 Score=50.69 Aligned_cols=43 Identities=12% Similarity=0.329 Sum_probs=35.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRR 178 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~ 178 (338)
+++|+.++|+.|++++..|++.|++|+++++....+ ..+++.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~-s~~eL~~ 43 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGL-DAATLER 43 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCC-CHHHHHH
Confidence 579999999999999999999999999999876433 3344433
No 188
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.63 E-value=0.21 Score=45.71 Aligned_cols=169 Identities=15% Similarity=0.215 Sum_probs=92.2
Q ss_pred CceEEEEc---CCChhHHHHHHHHHHcC-----CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEe----c-
Q 019633 133 TRLQLFEF---EACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY----E- 199 (338)
Q Consensus 133 ~~l~LY~~---~~cP~c~kVr~~L~elg-----i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~----E- 199 (338)
..+.+|.. +|||.|+.+.-+++++. +.+.++.++.+ ..++.. +...-..+|.|+.=++|..+. +
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~--~~~~l~-~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP--EDKEEA-EKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc--ccHHHH-HHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 45777877 89999999888887663 33445555532 233433 556677899997522553321 1
Q ss_pred --HHHHHHHHHHhhCCCCCC-CCCHHHHHHHHhhcchhhhccccccccccCCCCCCcccchhccccCChhhHHHHHHHHh
Q 019633 200 --SGDIVNYLFQQYGKGRSP-STGLLESTLITGWMPTIFRAGRGMTLWEKARPDPPSKKLELFSYENNPYARIVREALCE 276 (338)
Q Consensus 200 --S~aI~~YL~~~y~~~~~p-~~~~~e~a~~~~Wl~~~~~~~~g~~~~~~~~~~~pek~l~Ly~~~~sP~~rkVr~aL~E 276 (338)
-..+..+|...++-.... ..+...+..+.. ....-.+.+|.-+.||+|..+...+.+
T Consensus 98 ~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~--------------------~~~pv~I~~F~a~~C~~C~~~~~~l~~ 157 (215)
T TIGR02187 98 PAGYEFAALIEDIVRVSQGEPGLSEKTVELLQS--------------------LDEPVRIEVFVTPTCPYCPYAVLMAHK 157 (215)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHh--------------------cCCCcEEEEEECCCCCCcHHHHHHHHH
Confidence 234445555443211000 000100111110 011123566777899999988887775
Q ss_pred cC-----CceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCe--e-eccHHHHHHHHh
Q 019633 277 LE-----LPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTST--Q-IGDYKKILSYLF 328 (338)
Q Consensus 277 lg-----i~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~--~-l~ES~aI~~YL~ 328 (338)
+- +.+..++++ +.+++.+..+-..||+++..++|. . ...-..+.++|.
T Consensus 158 l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~~l~ 213 (215)
T TIGR02187 158 FALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFLEYIL 213 (215)
T ss_pred HHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHHHHHH
Confidence 43 333333332 346777888888999987654553 1 123345566654
No 189
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.62 E-value=0.0028 Score=51.54 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=38.8
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGS 302 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~ 302 (338)
+++|+.+.||+|++++..|.+.|++|+.+++.......+++.++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 47899999999999999999999999999997665555566555443
No 190
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.54 E-value=0.0036 Score=59.40 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=53.9
Q ss_pred CChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhhcCCC
Q 019633 263 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 334 (338)
Q Consensus 263 ~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~~ 334 (338)
.||||.+|...|...+||||.++... ..++.+|++|+++- +|..+.||.-|..+|.++|+-.
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~--------~~rSr~G~lPFIEL--NGe~iaDS~~I~~~L~~hf~~~ 121 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSL--------KRRSRNGTLPFIEL--NGEHIADSDLIEDRLRKHFKIP 121 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccc--------eeeccCCCcceEEe--CCeeccccHHHHHHHHHHcCCC
Confidence 48999999999999999999987432 26778999999998 5889999999999999998754
No 191
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0096 Score=46.27 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=46.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCC----------CCH--HHHHHhCCCCceeEEEeCCCCeEEe
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI----------RHR--EMVRRLGGKEQFPFLIDPNTGVSMY 198 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~----------~~~--e~l~~~nP~~qVP~Lvd~n~g~~l~ 198 (338)
.+||+...||-|....+.|+.++++|+.+++..... ..+ +.+ +-|+.--+|+|..+ +|.++.
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v-k~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEV-KSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhh-hhcCcccceEEEeC-CCcEEE
Confidence 389999999999999999999999999999853111 112 223 35778889999875 565554
No 192
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.014 Score=48.24 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=59.3
Q ss_pred CCcccchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCC---chHHHhHcCCCcccEEEcCCCCeeeccHHHHHHH
Q 019633 251 PPSKKLELFSYENNPYARIVREALCELELPYILQNVGDGSSR---TKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSY 326 (338)
Q Consensus 251 ~pek~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k---~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~Y 326 (338)
..+.++.+|+-..||||.+++..|..+++.+..+.++..+.- .+.+.++.++..||++.. .|..+.....|.++
T Consensus 11 i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 11 ISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMAL 87 (104)
T ss_pred hhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 445678889889999999999999999999999999765432 346677889999999988 36666777777665
No 193
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.35 E-value=0.018 Score=44.15 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=41.6
Q ss_pred eEEEEcCCChhHHHH----HHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEe
Q 019633 135 LQLFEFEACPFCRRV----REAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (338)
Q Consensus 135 l~LY~~~~cP~c~kV----r~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ 198 (338)
+.+|. ++||.|..+ ..++++++++++++.++. .+...+ .+-..+|+|+. +|..++
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-----~~~a~~-~~v~~vPti~i--~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD-----MNEILE-AGVTATPGVAV--DGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHH-cCCCcCCEEEE--CCEEEE
Confidence 67787 899999988 678889999999998872 223323 46779999998 665544
No 194
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.35 E-value=0.0065 Score=50.67 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=35.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRR 178 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~ 178 (338)
++||+.+.|+-|++++..|++.|++|+++++-...+ ..+.+..
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~-s~~eL~~ 44 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPW-TAETLRP 44 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCC-CHHHHHH
Confidence 789999999999999999999999999999875433 3344433
No 195
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.33 E-value=0.014 Score=44.95 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=48.0
Q ss_pred CChhhHHHHHHHHhcCCc---eEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHh
Q 019633 263 NNPYARIVREALCELELP---YILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLF 328 (338)
Q Consensus 263 ~sP~~rkVr~aL~Elgi~---ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~ 328 (338)
.+|-|-.+.+.|+..+.+ |+++..... .++|.|++|+|++. ++..+.+-..|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~--------~~Sptg~LP~L~~~-~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP--------WLSPTGELPALIDS-GGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC--------CcCCCCCCCEEEEC-CCcEEECHHHHHHhhC
Confidence 478899999999999999 888775442 57899999999983 4678999999999984
No 196
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.30 E-value=0.0054 Score=52.45 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=32.7
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGS 290 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~ 290 (338)
|+++|+.+.|+.|++++..|.+.|++|+.+++....
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 578999999999999999999999999999986443
No 197
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.27 E-value=0.0061 Score=52.20 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=32.8
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGS 290 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~ 290 (338)
|+++|+.+.|+.|++++..|.+.|++|+.+++....
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 578999999999999999999999999999996544
No 198
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.18 E-value=0.0058 Score=50.83 Aligned_cols=48 Identities=13% Similarity=0.260 Sum_probs=37.9
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHH---HhHcCCC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLL---VDITGSK 303 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~---l~~np~g 303 (338)
+++|+.+.||+|++++..|.+.|++|+.+++.......+++ ++..+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~ 51 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLEDG 51 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCC
Confidence 47899999999999999999999999999997654444444 4555543
No 199
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.04 E-value=0.015 Score=42.78 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=41.4
Q ss_pred chhccccCChhhHHHHHHHHhc-----CCceEEEEcCCCCCCchHHHhHcCCCcccEEEcC
Q 019633 256 LELFSYENNPYARIVREALCEL-----ELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 311 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~El-----gi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~ 311 (338)
+++|.-+.||+|.+++..|.++ ++++..++++.. +++.+..+...||++..+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~----~~l~~~~~i~~vPti~i~ 59 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF----PDLADEYGVMSVPAIVIN 59 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC----HhHHHHcCCcccCEEEEC
Confidence 6788889999999999999876 577777776542 467778888899999874
No 200
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.021 Score=48.00 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=36.4
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRR 178 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~ 178 (338)
|++||+.+.|.-|++++..|++.||+|+++++-... -.++.+.+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~-~s~~eL~~ 45 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTP-PSREELKK 45 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCC-CCHHHHHH
Confidence 799999999999999999999999999999886543 34444433
No 201
>PRK10853 putative reductase; Provisional
Probab=95.91 E-value=0.013 Score=49.27 Aligned_cols=44 Identities=9% Similarity=0.282 Sum_probs=36.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRR 178 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~ 178 (338)
|++||+.+.|.-|++++-.|++.|++|+++++-+..+ ..+.+.+
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~-s~~eL~~ 44 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGL-DSELLQG 44 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCc-CHHHHHH
Confidence 5899999999999999999999999999999865433 3344433
No 202
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.82 E-value=0.016 Score=49.30 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=33.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCC
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~ 169 (338)
.++||+.+.|.-|++++..|++.|++|+++++-+..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 589999999999999999999999999999986543
No 203
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.81 E-value=0.098 Score=39.47 Aligned_cols=54 Identities=20% Similarity=0.360 Sum_probs=37.6
Q ss_pred ceEEEEcCCChhHHHHHHHHHH----cCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLFEFEACPFCRRVREAITE----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~e----lgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
.++||..++||+|+.+.-.|++ .+..+.+..++.+ ..++.. +..+...+|+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~-~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM--ENPQKA-MEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc--cCHHHH-HHcCCccCCEEEE
Confidence 4789999999999999888764 3544555555432 233444 4566778999987
No 204
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.60 E-value=0.037 Score=37.49 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=38.5
Q ss_pred eEEEEcCCChhHHHHHHHHH-----HcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeC
Q 019633 135 LQLFEFEACPFCRRVREAIT-----ELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~-----elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+.+|...+||+|++++..+. ..++.+..++++.... .... ....+...+|.++.-
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~P~~~~~ 60 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA-LEKE-LKRYGVGGVPTLVVF 60 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH-HhhH-HHhCCCccccEEEEE
Confidence 45778889999999999999 5567777777654321 1111 135678899999764
No 205
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.59 E-value=0.09 Score=42.33 Aligned_cols=69 Identities=9% Similarity=0.028 Sum_probs=51.8
Q ss_pred eEEEEcCCCh------hHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCC----CCceeEEEeCCCCeEEecHHHHH
Q 019633 135 LQLFEFEACP------FCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG----KEQFPFLIDPNTGVSMYESGDIV 204 (338)
Q Consensus 135 l~LY~~~~cP------~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP----~~qVP~Lvd~n~g~~l~ES~aI~ 204 (338)
++||....+. .|+.|+.+|+.++|+|+.++++.+ ...++++.+..+ ...||-+.. ++..+....++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d-~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN-EENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC-HHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHH
Confidence 5666554322 688999999999999999999864 345566656543 479998877 789999988877
Q ss_pred HH
Q 019633 205 NY 206 (338)
Q Consensus 205 ~Y 206 (338)
+.
T Consensus 79 ~l 80 (92)
T cd03030 79 EA 80 (92)
T ss_pred HH
Confidence 63
No 206
>PRK10026 arsenate reductase; Provisional
Probab=95.56 E-value=0.023 Score=49.32 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=36.7
Q ss_pred CceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Q 019633 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRR 178 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~ 178 (338)
.+++||+.+.|.-|++++..|++.|++|+++++-...+ +.+.+..
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~pp-t~~eL~~ 46 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPP-TRDELVK 46 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCc-CHHHHHH
Confidence 36899999999999999999999999999999866433 3344433
No 207
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.45 E-value=0.022 Score=46.74 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=33.5
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCch
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTK 294 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~ 294 (338)
+++|+.+.|+.|++++..|.+.|++|+.+++.......+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~ 39 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAA 39 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHH
Confidence 578999999999999999999999999999966544333
No 208
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.40 E-value=0.076 Score=41.22 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=36.4
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcC----CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeC
Q 019633 134 RLQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elg----i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~ 191 (338)
.++||+.++|+.|..++.+|.... +.++.++++. .++.. +..+. .||||...
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~-~~Y~~-~IPVl~~~ 56 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELF-EKYGY-RIPVLHID 56 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHH-HHSCT-STSEEEET
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHH-HHhcC-CCCEEEEc
Confidence 379999999999999999999654 3445556652 33444 55544 89999883
No 209
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.024 Score=47.68 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=34.2
Q ss_pred ccchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCC
Q 019633 254 KKLELFSYENNPYARIVREALCELELPYILQNVGDGSSR 292 (338)
Q Consensus 254 k~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k 292 (338)
+|+++|+.+.|--|++++..|.+.||+|+.+++......
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s 39 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPS 39 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCC
Confidence 378999999999999999999999999999988654433
No 210
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.17 E-value=0.027 Score=46.94 Aligned_cols=37 Identities=3% Similarity=-0.080 Sum_probs=32.8
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSR 292 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k 292 (338)
+++|+.+.|+.|++++..|.+.|++|+.+++......
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s 38 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWT 38 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCC
Confidence 6799999999999999999999999999999655433
No 211
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.15 E-value=0.072 Score=42.31 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=42.6
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEe
Q 019633 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ 198 (338)
.+.+|..++||+|..+..+++++ ++.++.++++. .++.. +..+-..+|.++. +|..++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~----~~e~a-~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL----FQDEV-EERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh----CHHHH-HHcCCccCCEEEE--CCEEEE
Confidence 47889999999999988877766 67777777652 23444 4556778999988 676555
No 212
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.00 E-value=0.045 Score=45.28 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=31.9
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~ 169 (338)
++||+.+.|.-|++++..|++.|++|+++++-+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 58999999999999999999999999999986543
No 213
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=94.99 E-value=0.073 Score=42.84 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCC----CcccEEEcCCCCeeeccHHHHHHH
Q 019633 266 YARIVREALCELELPYILQNVGDGSSRTKLLVDITGS----KEVPYLIDPNTSTQIGDYKKILSY 326 (338)
Q Consensus 266 ~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~----g~VP~L~d~~~g~~l~ES~aI~~Y 326 (338)
-|+.|+..|..++|+|+.++|..++..++++.+..+. ..||.+..+ +..+....++.+.
T Consensus 18 ~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~--~~~iGg~ddl~~l 80 (92)
T cd03030 18 RQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNG--DEYCGDYEAFFEA 80 (92)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEEC--CEEeeCHHHHHHH
Confidence 4778999999999999999998877788888888654 789988753 5677777776653
No 214
>PRK10026 arsenate reductase; Provisional
Probab=94.96 E-value=0.035 Score=48.20 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=32.8
Q ss_pred ccchhccccCChhhHHHHHHHHhcCCceEEEEcCCC
Q 019633 254 KKLELFSYENNPYARIVREALCELELPYILQNVGDG 289 (338)
Q Consensus 254 k~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g 289 (338)
.++++|+++.|.-|++++..|.+.|++|+++++-..
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ 37 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLET 37 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCC
Confidence 468999999999999999999999999999998543
No 215
>PRK10853 putative reductase; Provisional
Probab=94.90 E-value=0.036 Score=46.59 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=33.5
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSR 292 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k 292 (338)
|+++|+.+.|.-|++++..|++.|++|+.+++-+....
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s 38 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLD 38 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcC
Confidence 57899999999999999999999999999998654433
No 216
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.88 E-value=0.05 Score=45.20 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=31.9
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~ 169 (338)
++||+.+.|+-|++++..|++.|++|+++++-...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNP 35 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 57999999999999999999999999999986543
No 217
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.16 Score=41.71 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCceEEEE-----cCCChhHHHHHHHHHHcC-CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHH
Q 019633 132 PTRLQLFE-----FEACPFCRRVREAITELD-LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (338)
Q Consensus 132 ~~~l~LY~-----~~~cP~c~kVr~~L~elg-i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~ 205 (338)
++++.||- +|.|.|+.++--+|..+| ++|..++|-.+ ..-|+-+++.+.--++|-|.. +|..+..|+-|.+
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DIv~E 90 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLYV--NGEFVGGCDIVRE 90 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC-HHHHhccHhhcCCCCCceeeE--CCEEeccHHHHHH
Confidence 45677775 567999999999999999 78888888543 345666777888889999988 7888888766655
Q ss_pred HH
Q 019633 206 YL 207 (338)
Q Consensus 206 YL 207 (338)
-.
T Consensus 91 m~ 92 (105)
T COG0278 91 MY 92 (105)
T ss_pred HH
Confidence 43
No 218
>PHA02125 thioredoxin-like protein
Probab=94.37 E-value=0.16 Score=38.57 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=38.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
|+.+|+.++|+.|+.+...|+++ ++++..++.+. .++.. +...-..+|++++
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~--~~~l~-~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDE--GVELT-AKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCC--CHHHH-HHcCCceeCeEEC
Confidence 57899999999999999998754 56666666433 33433 5566779999984
No 219
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.14 E-value=0.072 Score=45.31 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=31.7
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDG 289 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g 289 (338)
.+++|+++.|.-|++++..|.+.|++|+.+++.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 36899999999999999999999999999998543
No 220
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.00 E-value=0.37 Score=36.72 Aligned_cols=56 Identities=25% Similarity=0.508 Sum_probs=38.8
Q ss_pred eEEEEcCCChhHHHHHH----HHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEec
Q 019633 135 LQLFEFEACPFCRRVRE----AITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~----~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~E 199 (338)
++++ .++||+|.++.. ++.++|+.++++++. ..+.+ ...+-..+|.|+. +|...+.
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-----~~~~~-~~ygv~~vPalvI--ng~~~~~ 62 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE-----DFEEI-EKYGVMSVPALVI--NGKVVFV 62 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-----THHHH-HHTT-SSSSEEEE--TTEEEEE
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-----CHHHH-HHcCCCCCCEEEE--CCEEEEE
Confidence 5664 557999986554 667779889888862 23444 4567889999998 6766554
No 221
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.47 E-value=0.3 Score=40.82 Aligned_cols=70 Identities=20% Similarity=0.442 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCCHHHHHHhCC-CCceeEEEeCCCC------------eEEecHHHH
Q 019633 142 ACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPNTG------------VSMYESGDI 203 (338)
Q Consensus 142 ~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~~e~l~~~nP-~~qVP~Lvd~n~g------------~~l~ES~aI 203 (338)
.||.|..+.=+|... .|+++.+..++ + ..+-+..++. +...|+||.+++. ..|.+...|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R--P-R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR--P-RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC--c-hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 399999998888643 45555554432 2 2233333443 6679999975222 269999999
Q ss_pred HHHHHHhhCCC
Q 019633 204 VNYLFQQYGKG 214 (338)
Q Consensus 204 ~~YL~~~y~~~ 214 (338)
+.||.++||-.
T Consensus 100 ~~~La~r~g~p 110 (112)
T PF11287_consen 100 LRYLAERHGFP 110 (112)
T ss_pred HHHHHHHcCCC
Confidence 99999999853
No 222
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=93.28 E-value=0.13 Score=42.48 Aligned_cols=35 Identities=9% Similarity=0.008 Sum_probs=31.4
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGS 290 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~ 290 (338)
+++|+.+.|.-|++++..|.+.|++|+.+++.+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 57899999999999999999999999999985443
No 223
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.19 Score=39.20 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=46.3
Q ss_pred hhccccCChhhHHHHHHHHhcCCceEEEEcCCCCC----------CchHH--HhHcCCCcccEEEcCCCCeee
Q 019633 257 ELFSYENNPYARIVREALCELELPYILQNVGDGSS----------RTKLL--VDITGSKEVPYLIDPNTSTQI 317 (338)
Q Consensus 257 ~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~----------k~~~~--l~~np~g~VP~L~d~~~g~~l 317 (338)
++|.-..||-|.-..+.|+.++++|+.++|...-. .+++| .+.|+.-.+|+|..+|+.+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 78888999999999999999999999999943222 23444 345677779999876544444
No 224
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=92.86 E-value=0.16 Score=42.09 Aligned_cols=46 Identities=7% Similarity=0.025 Sum_probs=36.6
Q ss_pred chhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCch---HHHhHcC
Q 019633 256 LELFSYENNPYARIVREALCELELPYILQNVGDGSSRTK---LLVDITG 301 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~---~~l~~np 301 (338)
+++|+.+.|.-|++++..|.+.|++|+.+++.+.....+ ++++..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 578999999999999999999999999999865544433 4444444
No 225
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=0.35 Score=44.74 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=60.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
+-|+.+ .-|..|.-+|...++||.++-.+.. + + ++|.|+||.|.. +...+.|=..|+.++..+ |..
T Consensus 29 iLl~d~---ascLAVqtfLrMcnLPf~v~~~~Na-----e-f--mSP~G~vPllr~--g~~~~aef~pIV~fVeak-~~~ 94 (257)
T KOG3027|consen 29 ILLPDN---ASCLAVQTFLRMCNLPFNVRQRANA-----E-F--MSPGGKVPLLRI--GKTLFAEFEPIVDFVEAK-GVT 94 (257)
T ss_pred cccccc---hhHHHHHHHHHHcCCCceeeecCCc-----c-c--cCCCCCCceeee--cchhhhhhhHHHHHHHHh-ccc
Confidence 445544 3689999999999999999987653 2 2 689999999998 677899999999999886 322
Q ss_pred -CCCCCCHHHHHHHHhhcchh
Q 019633 215 -RSPSTGLLESTLITGWMPTI 234 (338)
Q Consensus 215 -~~p~~~~~e~a~~~~Wl~~~ 234 (338)
..+. +..+++.+...+..+
T Consensus 95 l~s~l-sE~qkadmra~vslV 114 (257)
T KOG3027|consen 95 LTSWL-SEDQKADMRAYVSLV 114 (257)
T ss_pred hhhhh-hhHHHHHHHHHHHHH
Confidence 1111 223455555555444
No 226
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=92.58 E-value=0.34 Score=37.50 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=39.8
Q ss_pred chhccccCChhhHHHHHHHHhcC----CceEEEEcCCCCCCchHHHhHcCCCcccEEEcCC
Q 019633 256 LELFSYENNPYARIVREALCELE----LPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPN 312 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~Elg----i~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~ 312 (338)
++||+-++|+.|..++..|.+.. +.++.++|.. .+++.+..+. .||||..++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHSCT-STSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHhcC-CCCEEEEcC
Confidence 68999999999999999998543 4566677763 4568888875 799998753
No 227
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.33 Score=39.88 Aligned_cols=65 Identities=9% Similarity=0.120 Sum_probs=53.8
Q ss_pred ccCChhhHHHHHHHHhcC-CceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 019633 261 YENNPYARIVREALCELE-LPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 327 (338)
Q Consensus 261 ~~~sP~~rkVr~aL~Elg-i~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL 327 (338)
++.|.|+.++..+|...| ++|..+||-.+..-|+.+.+.+..-.+|.|.. +|..+..|..|.+-.
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DIv~Em~ 92 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV--NGEFVGGCDIVREMY 92 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeE--CCEEeccHHHHHHHH
Confidence 578999999999999999 89999999877777888888899999999976 366677776666543
No 228
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.02 E-value=0.31 Score=32.72 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=39.2
Q ss_pred hhccccCChhhHHHHHHHH-----hcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCC
Q 019633 257 ELFSYENNPYARIVREALC-----ELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNT 313 (338)
Q Consensus 257 ~Ly~~~~sP~~rkVr~aL~-----Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~ 313 (338)
.+|....|++|.+++..+. ..++.+..+++..... ........+...+|+++..+.
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA-LEKELKRYGVGGVPTLVVFGP 62 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH-HhhHHHhCCCccccEEEEEeC
Confidence 3455678999999999998 5677777777655432 223345778899999876443
No 229
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=91.50 E-value=0.41 Score=39.16 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=25.0
Q ss_pred EEcCCChhHHHHHHHHHHcCCCeEEEEcCCC
Q 019633 138 FEFEACPFCRRVREAITELDLSVEVFPCPKG 168 (338)
Q Consensus 138 Y~~~~cP~c~kVr~~L~elgi~ye~~~v~~~ 168 (338)
|+.+.|.-|++++..|++.|++|+++++.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhC
Confidence 8899999999999999999999999998754
No 230
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=91.37 E-value=0.64 Score=35.45 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=38.5
Q ss_pred chhccccCChhhHHH----HHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEc
Q 019633 256 LELFSYENNPYARIV----REALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 310 (338)
Q Consensus 256 l~Ly~~~~sP~~rkV----r~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d 310 (338)
+.+|. +.||+|..+ ..++.++|++++.+.++. .++ ....+-..||+++.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~----~~~-a~~~~v~~vPti~i 55 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD----MNE-ILEAGVTATPGVAV 55 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC----HHH-HHHcCCCcCCEEEE
Confidence 66777 899999987 668888999999988872 223 44568889999987
No 231
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=90.90 E-value=0.67 Score=38.74 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=46.5
Q ss_pred CChhhHHHHHHHHh-----cCCceEEEEcCCCCCCchHHHhHcC--CCcccEEEcCCCC------------eeeccHHHH
Q 019633 263 NNPYARIVREALCE-----LELPYILQNVGDGSSRTKLLVDITG--SKEVPYLIDPNTS------------TQIGDYKKI 323 (338)
Q Consensus 263 ~sP~~rkVr~aL~E-----lgi~ye~~~v~~g~~k~~~~l~~np--~g~VP~L~d~~~g------------~~l~ES~aI 323 (338)
.||.|..+.=+|.- -.++.+.+...+ -+.+..+.-| +...|+|+-+++. ..|.|...|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 38888877766652 224444444333 3456666554 4559999865422 278899999
Q ss_pred HHHHhhhcCCCCC
Q 019633 324 LSYLFQSYSASPS 336 (338)
Q Consensus 324 ~~YL~~~y~~~~~ 336 (338)
++||.++|+-..|
T Consensus 100 ~~~La~r~g~p~p 112 (112)
T PF11287_consen 100 LRYLAERHGFPRP 112 (112)
T ss_pred HHHHHHHcCCCCC
Confidence 9999999986543
No 232
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=90.79 E-value=1.3 Score=37.07 Aligned_cols=64 Identities=14% Similarity=0.347 Sum_probs=38.6
Q ss_pred CceEEEEcCCChhHHHHHHHH----HHcCCCeEEEEcCCCC---CCC----HHHHHHhC---CCCceeEEEeCCCCeE
Q 019633 133 TRLQLFEFEACPFCRRVREAI----TELDLSVEVFPCPKGS---IRH----REMVRRLG---GKEQFPFLIDPNTGVS 196 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L----~elgi~ye~~~v~~~~---~~~----~e~l~~~n---P~~qVP~Lvd~n~g~~ 196 (338)
.-+..|+.++||+|+.+.=.| ++.++++-.++++.+. ... .++..+.+ +-..+|.++.=++|..
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 347778899999999865444 4556777777776432 111 23332221 2345999975456743
No 233
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=90.43 E-value=1.3 Score=33.08 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=44.6
Q ss_pred cchhccccCChhhHHHHHHHHh----cCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCee--eccHHHHHHHHh
Q 019633 255 KLELFSYENNPYARIVREALCE----LELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQ--IGDYKKILSYLF 328 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~E----lgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~--l~ES~aI~~YL~ 328 (338)
++++|.-+.||+|..+.-.|.+ .+..+....|+.+ +.++..+..+...||+++.++.... ...-..|.+.|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~~~l~ 79 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVINGDVEFIGAPTKEELVEAIK 79 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEECCEEEEecCCCHHHHHHHHH
Confidence 3678888999999988888764 3433444444332 2345566778888999987322111 124556666654
Q ss_pred h
Q 019633 329 Q 329 (338)
Q Consensus 329 ~ 329 (338)
+
T Consensus 80 ~ 80 (82)
T TIGR00411 80 K 80 (82)
T ss_pred h
Confidence 3
No 234
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=90.41 E-value=0.18 Score=42.76 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=17.0
Q ss_pred CCCcccEEEcCCCCeeeccHHHHHHHHhhhcCCC
Q 019633 301 GSKEVPYLIDPNTSTQIGDYKKILSYLFQSYSAS 334 (338)
Q Consensus 301 p~g~VP~L~d~~~g~~l~ES~aI~~YL~~~y~~~ 334 (338)
....-|-|.+..+|+.++|.+||++||.+-|.+.
T Consensus 32 ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~ 65 (122)
T PF09635_consen 32 EDESGPLLKDKKSGFELFEPNAIVRYLANDFEGQ 65 (122)
T ss_dssp SS--S--EEE-S--S----HHHHHHHHTT--TTT
T ss_pred CccccceeeecCCceEEecccHHHHHHHhhcCCc
Confidence 3444588988889999999999999999888653
No 235
>PHA02125 thioredoxin-like protein
Probab=89.74 E-value=0.89 Score=34.42 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=41.1
Q ss_pred cchhccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcC
Q 019633 255 KLELFSYENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 311 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~ 311 (338)
|+.+|+-+.|+.|+.+...|.++ +++..+|+.+ ...++.+..+-..+|+++++
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~--~~~~l~~~~~v~~~PT~~~g 53 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANV--EYTYVDVDTD--EGVELTAKHHIRSLPTLVNT 53 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHH--hheEEeeeCC--CCHHHHHHcCCceeCeEECC
Confidence 46778889999999999999764 5666666553 34678888888999999953
No 236
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=3.3 Score=39.77 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=52.8
Q ss_pred CceEEEEcCCChhHHHHHHHHHHcCCCe----EE-EE-cCCCCCC--------------------------CHHHHHHh-
Q 019633 133 TRLQLFEFEACPFCRRVREAITELDLSV----EV-FP-CPKGSIR--------------------------HREMVRRL- 179 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~elgi~y----e~-~~-v~~~~~~--------------------------~~e~l~~~- 179 (338)
...-||..-.||++.+..+++..+|++= .+ ++ .+..+|. -++.....
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 5789999999999999999999998862 22 23 1111121 12222222
Q ss_pred ---CCCCceeEEEeCCCCe-EEecHHHHHHHHHHhh
Q 019633 180 ---GGKEQFPFLIDPNTGV-SMYESGDIVNYLFQQY 211 (338)
Q Consensus 180 ---nP~~qVP~Lvd~n~g~-~l~ES~aI~~YL~~~y 211 (338)
.++-+||||.|-.+.. +=-||.+|++.+...|
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f 151 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAF 151 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhh
Confidence 3466899999864443 4679999999999433
No 237
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=89.43 E-value=2.1 Score=31.62 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=38.2
Q ss_pred ceEEEEcCCChhHHHHHHHHHH-----cCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCe
Q 019633 134 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~e-----lgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~ 195 (338)
-+.+|+.++|+.|+.+...+.+ .++.+-.++++. ..+.. +..+...+|+++.-+.|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~-~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE----NPELA-EEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC----ChhHH-HhcCcccccEEEEEECCE
Confidence 4677788899999999988877 566666666654 22333 344566799875433554
No 238
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=87.86 E-value=0.8 Score=37.44 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=29.2
Q ss_pred ccccCChhhHHHHHHHHhcCCceEEEEcCCCCCCch---HHHhHcCC
Q 019633 259 FSYENNPYARIVREALCELELPYILQNVGDGSSRTK---LLVDITGS 302 (338)
Q Consensus 259 y~~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~---~~l~~np~ 302 (338)
|+.+.|.-|++++..|.+.|++|+.+++.+.....+ ++++..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~ 47 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGN 47 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTS
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcc
Confidence 677899999999999999999999999976544433 44445553
No 239
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.12 E-value=1.2 Score=41.66 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=57.2
Q ss_pred CceEEEE-----cCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHH
Q 019633 133 TRLQLFE-----FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (338)
Q Consensus 133 ~~l~LY~-----~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL 207 (338)
++++||- ++.|.|++++--.|.+.|++|...+|-.++ .-|+-+++.+---++|-|.. +|..+..++-|.+-+
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~De-elRqglK~fSdWPTfPQlyI--~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDE-ELRQGLKEFSDWPTFPQLYV--KGEFIGGLDILKEMH 215 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCH-HHHHHhhhhcCCCCccceeE--CCEeccCcHHHHHHh
Confidence 5677775 457999999999999999999999997543 45667778888889999988 788787765555443
No 240
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=86.77 E-value=7.3 Score=29.91 Aligned_cols=73 Identities=15% Similarity=0.312 Sum_probs=45.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE------ecHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESGDI 203 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l------~ES~aI 203 (338)
-+..|..++|+.|+..+-.+.++ +-++.+..++.+ ..++.. +...-..+|.++.-.+|..+ .+...|
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~-~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELC-KKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHH-HHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhh-hccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 45667778999999888655433 324555554433 234444 45557789999643356433 356677
Q ss_pred HHHHHH
Q 019633 204 VNYLFQ 209 (338)
Q Consensus 204 ~~YL~~ 209 (338)
.++|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 777765
No 241
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=86.56 E-value=0.64 Score=38.20 Aligned_cols=52 Identities=27% Similarity=0.523 Sum_probs=34.8
Q ss_pred ceEEE-EcCCChhHHHHHHHHHHcC-----CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLF-EFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY-~~~~cP~c~kVr~~L~elg-----i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
.+++| +.+|||+|+.++-+|+++. +.+..++++. .++ +.+..+-..+|.++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~----~~~-l~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE----DKE-KAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc----CHH-HHHHcCCCcCCEEEE
Confidence 46666 5579999999988887664 3344444442 334 435566789999975
No 242
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=86.02 E-value=3.1 Score=31.53 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=37.5
Q ss_pred chhccccCChhhHHHHH----HHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeecc
Q 019633 256 LELFSYENNPYARIVRE----ALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGD 319 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~----aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~E 319 (338)
++++ .++||+|..+.. ++.++|+.++.+++ ...++. ...+-..||.|+.+ |...|.
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~----~~~~~~-~~ygv~~vPalvIn--g~~~~~ 62 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI----EDFEEI-EKYGVMSVPALVIN--GKVVFV 62 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET----TTHHHH-HHTT-SSSSEEEET--TEEEEE
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc----cCHHHH-HHcCCCCCCEEEEC--CEEEEE
Confidence 4453 456999995554 66678888888775 234555 88899999999873 444443
No 243
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=85.11 E-value=1.9 Score=34.10 Aligned_cols=52 Identities=15% Similarity=0.048 Sum_probs=40.3
Q ss_pred cchhccccCChhhHHHHHHHHhc-----CCceEEEEcCCCCCCchHHHhHcCCCcccEEEc
Q 019633 255 KLELFSYENNPYARIVREALCEL-----ELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 310 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~El-----gi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d 310 (338)
.+.+|..+.||+|..+...+.++ ++.++.++++. .++..+..+-..||.++.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~----~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL----FQDEVEERGIMSVPAIFL 71 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh----CHHHHHHcCCccCCEEEE
Confidence 47788889999999888877655 46777777653 357778888889999986
No 244
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=85.09 E-value=4.7 Score=31.57 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=35.5
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE
Q 019633 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l 197 (338)
.+.+|..++|+.|+...-.|+++ +-.+.+..++.+ ..++.. +...-..+|+++.-++|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~-~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIA-EAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHH-HHCCCeeccEEEEEECCeEE
Confidence 46677779999999888777652 212334444332 233444 44456689988533356443
No 245
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=84.21 E-value=0.54 Score=39.89 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=16.2
Q ss_pred CCCCceeEEEeCCCCeEEecHHHHHHHHHHhhCC
Q 019633 180 GGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (338)
Q Consensus 180 nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~ 213 (338)
|....-|-|.+..+|..|+|..||++||..-|-+
T Consensus 31 ~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 31 NEDESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -SS--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred CCccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 3333458887877999999999999999887754
No 246
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=83.36 E-value=5.9 Score=32.44 Aligned_cols=19 Identities=32% Similarity=0.910 Sum_probs=14.9
Q ss_pred CceEEEEcCCChhHHHHHH
Q 019633 133 TRLQLFEFEACPFCRRVRE 151 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~ 151 (338)
..+..|+.++||+|++...
T Consensus 16 ~vlv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKR 34 (125)
T ss_pred cEEEEEeCCCCHHHHHHHH
Confidence 3567788889999998764
No 247
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=83.35 E-value=1.9 Score=39.43 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=37.4
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCC---CeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCe
Q 019633 134 RLQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi---~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~ 195 (338)
.+.+|.-++||+|..+..+++++-- .+.+..++.+ ..++.. +..+-..+|.++...+|.
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~--~~~~~~-~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN--ENPDLA-EKYGVMSVPKIVINKGVE 197 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC--CCHHHH-HHhCCccCCEEEEecCCE
Confidence 5677889999999999888876532 2333334332 233434 455677899997643443
No 248
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=82.96 E-value=3 Score=43.63 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=41.8
Q ss_pred ceEEEEcCCChhHHHHHHHH----HHc-CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEec
Q 019633 134 RLQLFEFEACPFCRRVREAI----TEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L----~el-gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~E 199 (338)
.+++|..++||+|..+..++ .+. +|.++.+++.. .++.. +..+-..||.++. +|..+++
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~----~~~~~-~~~~v~~vP~~~i--~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH----FPDLK-DEYGIMSVPAIVV--DDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc----cHHHH-HhCCceecCEEEE--CCEEEEe
Confidence 47889899999998776644 455 78888888752 34544 4556778999998 5654443
No 249
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.36 E-value=8.7 Score=37.25 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=61.5
Q ss_pred CceEEEEcCCChhHHHHHHHHHHcCCC----eEEEE-c-CCCCCC--------------C----HHHHHH----hCCCCc
Q 019633 133 TRLQLFEFEACPFCRRVREAITELDLS----VEVFP-C-PKGSIR--------------H----REMVRR----LGGKEQ 184 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~elgi~----ye~~~-v-~~~~~~--------------~----~e~l~~----~nP~~q 184 (338)
....||..-+||++.+..++=..+|++ +.++. . +..+|. . .+...+ .++..+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 368999999999999988877777775 22221 1 111111 0 111111 356779
Q ss_pred eeEEEeCCCCeE-EecHHHHHHHHHHhhCCC-----CCCCCCHHHHHHHHhhcchh
Q 019633 185 FPFLIDPNTGVS-MYESGDIVNYLFQQYGKG-----RSPSTGLLESTLITGWMPTI 234 (338)
Q Consensus 185 VP~Lvd~n~g~~-l~ES~aI~~YL~~~y~~~-----~~p~~~~~e~a~~~~Wl~~~ 234 (338)
||+|.|..+..+ =-||.+|++-|...|.+. .+.|. .-+.++..|...+
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~I 183 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWI 183 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhh
Confidence 999999755544 579999999997666431 22232 2256666665554
No 250
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.69 E-value=12 Score=36.64 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 142 ~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
.||-|..|.+.+...+-+.+++.... .| ..|.|++|+|++. +|..+..-..|+.||.+
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-~~--------~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-PW--------RSPSGKLPYLITD-NGTKVAGPVKIVQFLKK 73 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-CC--------CCCCCCCCeEEec-CCceeccHHHHHHHHHH
Confidence 48999999999999986666655432 11 4688899999986 67899999999999987
No 251
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.70 E-value=1.4 Score=45.65 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=48.6
Q ss_pred CceEEEEcCCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEec----HHHH
Q 019633 133 TRLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE----SGDI 203 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~E----S~aI 203 (338)
-.+++|..+.||||..+..++.++ +|..+.++ ....++.. +...-..||.++. +|..+++ -..|
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id----~~~~~~~~-~~~~v~~VP~~~i--~~~~~~~g~~~~~~~ 190 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMID----GALFQDEV-EARNIMAVPTVFL--NGEEFGQGRMTLEEI 190 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEE----chhCHhHH-HhcCCcccCEEEE--CCcEEEecCCCHHHH
Confidence 358899999999999988777665 34444443 23456666 4455679999988 5555554 3466
Q ss_pred HHHHHHhhC
Q 019633 204 VNYLFQQYG 212 (338)
Q Consensus 204 ~~YL~~~y~ 212 (338)
++.|.+..+
T Consensus 191 ~~~~~~~~~ 199 (517)
T PRK15317 191 LAKLDTGAA 199 (517)
T ss_pred HHHHhcccc
Confidence 777765443
No 252
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.62 E-value=1.2 Score=46.15 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=46.6
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcC-----CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEec----HHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE----SGDIV 204 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elg-----i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~E----S~aI~ 204 (338)
.+++|..+.||||..+..++.++- |..+.++ ....++.. +...-..||.++. +|..+++ -.+++
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id----~~~~~~~~-~~~~v~~VP~~~i--~~~~~~~g~~~~~~~~ 192 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMID----GALFQDEV-EALGIQGVPAVFL--NGEEFHNGRMDLAELL 192 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE----chhCHHHH-HhcCCcccCEEEE--CCcEEEecCCCHHHHH
Confidence 588999999999999888877664 3444433 23456666 4445669999988 5555555 24555
Q ss_pred HHHHHh
Q 019633 205 NYLFQQ 210 (338)
Q Consensus 205 ~YL~~~ 210 (338)
+.|.+.
T Consensus 193 ~~l~~~ 198 (515)
T TIGR03140 193 EKLEET 198 (515)
T ss_pred HHHhhc
Confidence 566544
No 253
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=78.99 E-value=16 Score=27.78 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=32.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHc----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCe
Q 019633 135 LQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~el----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~ 195 (338)
+..|..++|+.|+.+...+.++ +-.+.+..++.+. ..+.. +..+-..+|.++.-++|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~-~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--NPDIA-AKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--CHHHH-HHcCCCcCCEEEEEeCCc
Confidence 4455667899999887666543 3224444443322 23333 344566899875322443
No 254
>PTZ00051 thioredoxin; Provisional
Probab=78.10 E-value=13 Score=28.69 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=35.2
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeE
Q 019633 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~ 196 (338)
-+..|..++|+.|+...-.+..+ ++.+-.++++. ..... +..+-..+|+++.-.+|..
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~----~~~~~-~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE----LSEVA-EKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc----hHHHH-HHCCCceeeEEEEEeCCeE
Confidence 45667788999999887766653 34443444432 23334 4455678998854335643
No 255
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=77.66 E-value=11 Score=30.81 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=42.2
Q ss_pred eEEEEcCCCh------hHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhC---------CCCceeEEEeCCCCeEEec
Q 019633 135 LQLFEFEACP------FCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG---------GKEQFPFLIDPNTGVSMYE 199 (338)
Q Consensus 135 l~LY~~~~cP------~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~n---------P~~qVP~Lvd~n~g~~l~E 199 (338)
+++|....+. .++++..+|+-++|+|+.+++..+ ...++++.+.. +....|.|.- ++..+.+
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~-e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~Gd 79 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD-EEARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYCGD 79 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEEEE
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC-HHHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEEee
Confidence 6677654332 567889999999999999999864 34556665544 3334577776 6777776
Q ss_pred HHHHHHH
Q 019633 200 SGDIVNY 206 (338)
Q Consensus 200 S~aI~~Y 206 (338)
=.++.+.
T Consensus 80 ye~f~ea 86 (99)
T PF04908_consen 80 YEDFEEA 86 (99)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 256
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=76.35 E-value=10 Score=31.95 Aligned_cols=65 Identities=11% Similarity=0.316 Sum_probs=39.2
Q ss_pred eEEEEcCCChhHHHHH-------HHHHHcCCCeEEEEcCCCCCCC-H----HHHHHhCCCCceeEEE--eCCCCeEEecH
Q 019633 135 LQLFEFEACPFCRRVR-------EAITELDLSVEVFPCPKGSIRH-R----EMVRRLGGKEQFPFLI--DPNTGVSMYES 200 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr-------~~L~elgi~ye~~~v~~~~~~~-~----e~l~~~nP~~qVP~Lv--d~n~g~~l~ES 200 (338)
+..++..+|++|++.. .+...++-.|..+.++.++... . +.+..+++..-+|+++ ++ +|..++.+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~-~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP-DLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC-CCCEEeee
Confidence 3446677999999773 3444455578887777543211 1 1111234566789884 44 78888776
No 257
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.30 E-value=40 Score=35.31 Aligned_cols=53 Identities=15% Similarity=0.007 Sum_probs=39.7
Q ss_pred cchhccccCChhhHHHHHHH----Hhc-CCceEEEEcCCCCCCchHHHhHcCCCcccEEEcC
Q 019633 255 KLELFSYENNPYARIVREAL----CEL-ELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDP 311 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL----~El-gi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~ 311 (338)
.+++|--+.||+|..+..++ .+. +|.++.+++.. .+++.+..+-..||.++.+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~----~~~~~~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH----FPDLKDEYGIMSVPAIVVD 536 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc----cHHHHHhCCceecCEEEEC
Confidence 47788888999998766644 455 67777777533 4688888889999999874
No 258
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=75.76 E-value=5.7 Score=37.01 Aligned_cols=26 Identities=15% Similarity=0.553 Sum_probs=21.2
Q ss_pred CCCceEEEEcCCChhHHHHHHHHHHc
Q 019633 131 SPTRLQLFEFEACPFCRRVREAITEL 156 (338)
Q Consensus 131 p~~~l~LY~~~~cP~c~kVr~~L~el 156 (338)
....+.+|+-+.||||++...-|.++
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHH
Confidence 44568889999999999998777665
No 259
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=75.62 E-value=6.1 Score=31.18 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=31.4
Q ss_pred ceEEEEcCCChhHHHHHHHH-------HHcCCCeEEE--EcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLFEFEACPFCRRVREAI-------TELDLSVEVF--PCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L-------~elgi~ye~~--~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
.+..|+.++|++|+.....+ .+++=.+.+. +++..+....+ +.+..+-..+|+++.
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~i~~~Pti~~ 78 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITA-LLKRFGVFGPPTYLF 78 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHH-HHHHcCCCCCCEEEE
Confidence 46678889999999876332 2222134444 44332211233 335555678998853
No 260
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=75.06 E-value=9.1 Score=31.63 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=34.1
Q ss_pred ceEEEEcCCChhHHHHHHHHHH------cCCCeEEEEcCCCCCCCHHHHHHhCCCC-ceeEEEeCC-CCeE
Q 019633 134 RLQLFEFEACPFCRRVREAITE------LDLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFLIDPN-TGVS 196 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~e------lgi~ye~~~v~~~~~~~~e~l~~~nP~~-qVP~Lvd~n-~g~~ 196 (338)
-+..|+-+||+.|++..-.+.+ .+..|..++++.+.....+ ..+..+ -+|.++--+ +|..
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccceEEEECCCCCC
Confidence 3555777899999988665554 3445666666643221112 334443 499885321 5543
No 261
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=74.90 E-value=4.7 Score=31.10 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=37.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeE
Q 019633 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~ 196 (338)
-+..|.-++|+.|++....|+++ ...+.+..++.. ...+...+. .-..+|+++.=++|..
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~--~~~~~~~~~-~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE--ELPEISEKF-EITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc--cCHHHHHhc-CCccccEEEEEECCEE
Confidence 35567788999999998777653 334555666533 234444334 4567998854336654
No 262
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=74.15 E-value=18 Score=27.87 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=33.3
Q ss_pred CceEEEEcCCChhHHHHHHHHH----HcC--CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCe
Q 019633 133 TRLQLFEFEACPFCRRVREAIT----ELD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~----elg--i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~ 195 (338)
.-+.+|.-++||.|+...-.+. +.. -.+.+..++-......... +..+-..+|.++.-++|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALK-EEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHH-HhCCCccccEEEEEeCCC
Confidence 3467777889999998754332 222 2233333332221234444 334556799885433554
No 263
>PRK09381 trxA thioredoxin; Provisional
Probab=73.92 E-value=30 Score=27.27 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=33.1
Q ss_pred eEEEEcCCChhHHHHHHHHHH----cCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE
Q 019633 135 LQLFEFEACPFCRRVREAITE----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~e----lgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l 197 (338)
+..+..++||.|+...-.+++ .+-.+.+..++.+. .+... +..+-..+|.++.-++|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~-~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTA-PKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHH-HhCCCCcCCEEEEEeCCeEE
Confidence 455667799999987655543 32234444443322 22333 33456689988543366544
No 264
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.90 E-value=5.9 Score=37.08 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=54.3
Q ss_pred ccCChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHH
Q 019633 261 YENNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYL 327 (338)
Q Consensus 261 ~~~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL 327 (338)
++.|.|.+.+.-.|.+.+++|...+|-.++.-|.-+.+.+-.-..|.|.. +|..+..+..|.+-+
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI--~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYV--KGEFIGGLDILKEMH 215 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeE--CCEeccCcHHHHHHh
Confidence 56899999999999999999999999888778888888999999999987 366666666665544
No 265
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=73.65 E-value=17 Score=28.78 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=33.3
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc------------CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCe
Q 019633 134 RLQLFEFEACPFCRRVREAITEL------------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el------------gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~ 195 (338)
-+..|.-++|+.|+...-.+.++ .+.+-.++++. .++.. +..+-..+|.|+.=.+|.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~----~~~l~-~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK----ESDIA-DRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC----CHHHH-HhCCCCcCCEEEEEeCCc
Confidence 35667788999999887666432 13333345543 23433 455667899886322443
No 266
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=72.98 E-value=7.7 Score=34.70 Aligned_cols=25 Identities=20% Similarity=0.667 Sum_probs=21.0
Q ss_pred CCCceEEEEcCCChhHHHHHHHHHH
Q 019633 131 SPTRLQLFEFEACPFCRRVREAITE 155 (338)
Q Consensus 131 p~~~l~LY~~~~cP~c~kVr~~L~e 155 (338)
.+..+.+|..+.||||++....+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4457888999999999999988875
No 267
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=72.97 E-value=24 Score=28.43 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=32.4
Q ss_pred ceEEEEcCCChhHHHHHHHH----HHc---CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeE
Q 019633 134 RLQLFEFEACPFCRRVREAI----TEL---DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L----~el---gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~ 196 (338)
-+..|..+||+.|+...-.+ +++ ++.+-.++++. .+... +..+-..+|.++.-++|..
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~-~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLA-RKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHH-HHcCCccCCEEEEEECCEE
Confidence 35567778999998665433 332 33333444442 22333 4455678998863335643
No 268
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=72.75 E-value=8.7 Score=36.24 Aligned_cols=25 Identities=20% Similarity=0.642 Sum_probs=19.8
Q ss_pred CCCceEEEEcCCChhHHHHHHHHHH
Q 019633 131 SPTRLQLFEFEACPFCRRVREAITE 155 (338)
Q Consensus 131 p~~~l~LY~~~~cP~c~kVr~~L~e 155 (338)
.+..+.+|.-+.||||++....+.+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHH
Confidence 3456788888999999999877654
No 269
>PRK10996 thioredoxin 2; Provisional
Probab=71.24 E-value=43 Score=28.30 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=36.3
Q ss_pred ceEEEEcCCChhHHHHHHHHHH----cCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE
Q 019633 134 RLQLFEFEACPFCRRVREAITE----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~e----lgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l 197 (338)
-+..|+-+||+.|+...-.+.+ .+-.+.+..++.+. ..+.. +...-..+|.++.-++|..+
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~-~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA--ERELS-ARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC--CHHHH-HhcCCCccCEEEEEECCEEE
Confidence 4566777899999987555543 33345555554432 33444 44556789988643366543
No 270
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=71.08 E-value=50 Score=28.11 Aligned_cols=76 Identities=11% Similarity=0.127 Sum_probs=40.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHc----C--CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeC-CCCeEEe------cHH
Q 019633 135 LQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP-NTGVSMY------ESG 201 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~el----g--i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~-n~g~~l~------ES~ 201 (338)
+..|.-+||+.|+...-.+.++ + +.+..++++. ....+.. +...-..+|.++.= .+|..+. .-.
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~--~~~~~~~-~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~ 100 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN--PKWLPEI-DRYRVDGIPHFVFLDREGNEEGQSIGLQPKQ 100 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC--cccHHHH-HHcCCCCCCEEEEECCCCCEEEEEeCCCCHH
Confidence 4456667999999877666543 2 3333444443 2223444 44456679977532 2564432 234
Q ss_pred HHHHHHHHhhCC
Q 019633 202 DIVNYLFQQYGK 213 (338)
Q Consensus 202 aI~~YL~~~y~~ 213 (338)
.|.+.|.+....
T Consensus 101 ~l~~~l~~l~~~ 112 (142)
T cd02950 101 VLAQNLDALVAG 112 (142)
T ss_pred HHHHHHHHHHcC
Confidence 455555554443
No 271
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=70.20 E-value=35 Score=29.63 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=49.7
Q ss_pred CceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCc---eeEEEeCCCCeEEecHHHHHHHHHH
Q 019633 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQ---FPFLIDPNTGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~q---VP~Lvd~n~g~~l~ES~aI~~YL~~ 209 (338)
..++|| -..||+|-...-+|...+-.-.++..+..++.....+ +..|... .=++.+. +|..+.+|.|+++-+..
T Consensus 9 ~~vvly-DG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l-~~~~l~~~~~~s~~~~~-~g~~~~~sdA~~~i~~~ 85 (137)
T COG3011 9 DLVVLY-DGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALL-EAAGLDPEDVDSVLLVE-AGQLLVGSDAAIRILRL 85 (137)
T ss_pred CEEEEE-CCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHH-hhcCCChhhhheeeEec-CCceEeccHHHHHHHHH
Confidence 344555 4579999988888888888877776654444444444 3333221 1222332 78999999999998877
Q ss_pred hh
Q 019633 210 QY 211 (338)
Q Consensus 210 ~y 211 (338)
.-
T Consensus 86 L~ 87 (137)
T COG3011 86 LP 87 (137)
T ss_pred CC
Confidence 63
No 272
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=69.38 E-value=4.4 Score=32.19 Aligned_cols=23 Identities=17% Similarity=0.618 Sum_probs=15.9
Q ss_pred CCceEEEEcCCChhHHHHHHHHH
Q 019633 132 PTRLQLFEFEACPFCRRVREAIT 154 (338)
Q Consensus 132 ~~~l~LY~~~~cP~c~kVr~~L~ 154 (338)
...+.+|..++||+|++....+.
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHH
Confidence 34577788899999998876655
No 273
>PHA02278 thioredoxin-like protein
Probab=68.64 E-value=29 Score=28.08 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=35.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHc----C--CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE
Q 019633 135 LQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~el----g--i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l 197 (338)
+.-|.-+||+.|+...-.++++ + +++-.++++.......+ +.+...-..+|+++.=.+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~-l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREK-AVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHH-HHHHCCCccccEEEEEECCEEE
Confidence 4456677999999777555443 2 33444566543211233 3344456689998643366554
No 274
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=68.11 E-value=11 Score=33.45 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=26.0
Q ss_pred CceEEE-EcCCChhHH-------HHHHHHHHcCCCeEEEEcCCCC
Q 019633 133 TRLQLF-EFEACPFCR-------RVREAITELDLSVEVFPCPKGS 169 (338)
Q Consensus 133 ~~l~LY-~~~~cP~c~-------kVr~~L~elgi~ye~~~v~~~~ 169 (338)
+-+.|| +..+||.|| ++...+...+-++|++.|+.+.
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 345554 456899998 4555666677789999987653
No 275
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=68.09 E-value=5.9 Score=32.44 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=37.0
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCC---CeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEe
Q 019633 134 RLQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi---~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ 198 (338)
-+..|..++|+.|+.+.-.|+++.- .+.++.++.+. .++ +.+...-..+|+++.=.+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~--~~~-l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK--APF-LVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc--CHH-HHHHCCCccCCEEEEEECCEEEE
Confidence 3555666899999988877766421 12344443221 233 33555677899996444676554
No 276
>PHA03075 glutaredoxin-like protein; Provisional
Probab=65.13 E-value=8 Score=32.68 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=38.9
Q ss_pred CceEEEEcCCChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
+.+.|++.+.|+-|.-+..+|.++.=+|++..+.--+ ++ .-.++|=+|-.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS-----fF---sK~g~v~~lg~ 52 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNILS-----FF---SKDGQVKVLGM 52 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee-----ee---ccCCceEEEec
Confidence 4789999999999999999999999999988775322 22 23457777754
No 277
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=64.82 E-value=32 Score=27.68 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=39.5
Q ss_pred EEcCCChhHHHHHHHHHHcCC--CeEEEEcCCCCCCCHHHHH--HhC---CCCceeEEEeCCCC-eEEecHHHHHHHHHH
Q 019633 138 FEFEACPFCRRVREAITELDL--SVEVFPCPKGSIRHREMVR--RLG---GKEQFPFLIDPNTG-VSMYESGDIVNYLFQ 209 (338)
Q Consensus 138 Y~~~~cP~c~kVr~~L~elgi--~ye~~~v~~~~~~~~e~l~--~~n---P~~qVP~Lvd~n~g-~~l~ES~aI~~YL~~ 209 (338)
|.-..||+|......+..++. .++++++.. ....+.+. .+. -. +.-.+++ +| ....++.|+++-+..
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~~--~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQS--EPDQALLASYGISPEDAD-SRLHLID--DGERVYRGSDAVLRLLRR 76 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCC--hhhhhHHHhcCcCHHHHc-CeeEEec--CCCEEEEcHHHHHHHHHH
Confidence 344579999999999988876 455555521 11111110 111 12 2333333 45 489999999988655
Q ss_pred h
Q 019633 210 Q 210 (338)
Q Consensus 210 ~ 210 (338)
.
T Consensus 77 ~ 77 (114)
T PF04134_consen 77 L 77 (114)
T ss_pred c
Confidence 3
No 278
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=63.87 E-value=17 Score=29.74 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcC---------CCcccEEEcCCCCeeeccHHHHHHH
Q 019633 266 YARIVREALCELELPYILQNVGDGSSRTKLLVDITG---------SKEVPYLIDPNTSTQIGDYKKILSY 326 (338)
Q Consensus 266 ~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np---------~g~VP~L~d~~~g~~l~ES~aI~~Y 326 (338)
.++++...|..++|+|+.++|..++..++.+.+..+ ..-.|.+.. ++..+.+-.++.+-
T Consensus 19 ~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~Gdye~f~ea 86 (99)
T PF04908_consen 19 RQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYCGDYEDFEEA 86 (99)
T ss_dssp HHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEEeeHHHHHHH
Confidence 355889999999999999999887667777777662 223467765 34566665555443
No 279
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=62.55 E-value=53 Score=25.89 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=33.3
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc----C-CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeE
Q 019633 134 RLQLFEFEACPFCRRVREAITEL----D-LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el----g-i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~ 196 (338)
-+..|.-+||+.|+...-.+..+ + -.+.+..++.+ ..+.. +...-..+|.++.-.+|..
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~~~~~-~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---TIDTL-KRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---CHHHH-HHcCCCcCcEEEEEECCEE
Confidence 35567778999999877666543 2 12333344332 23333 4455678897753335643
No 280
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.64 E-value=19 Score=33.60 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=45.4
Q ss_pred ChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhhh
Q 019633 264 NPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQS 330 (338)
Q Consensus 264 sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~~ 330 (338)
...|..|...|..-++||.++-... .|| ++|.|+||.|..+ ...+.|=..|+.+...+
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~N-----aef--mSP~G~vPllr~g--~~~~aef~pIV~fVeak 91 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRAN-----AEF--MSPGGKVPLLRIG--KTLFAEFEPIVDFVEAK 91 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecCC-----ccc--cCCCCCCceeeec--chhhhhhhHHHHHHHHh
Confidence 3458899999999999998886543 233 5799999999985 35677999999998764
No 281
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=61.37 E-value=27 Score=27.88 Aligned_cols=54 Identities=26% Similarity=0.502 Sum_probs=31.5
Q ss_pred CceEEEEcCCChhHHHHHHHHHHc-----CCCeEE--EEcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 133 TRLQLFEFEACPFCRRVREAITEL-----DLSVEV--FPCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~el-----gi~ye~--~~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
.-+..|..++||.|++..-.+.++ +..+.+ ++++.. ......+..+-..+|.++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---QREFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---chhhHHhhcCCCcCCEEE
Confidence 356778889999999776555443 222333 444431 123332345677899885
No 282
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=60.34 E-value=45 Score=30.16 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=21.0
Q ss_pred eEEEEcCCChhHHHHHHHH----HHcCCCeEEEEcC
Q 019633 135 LQLFEFEACPFCRRVREAI----TELDLSVEVFPCP 166 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L----~elgi~ye~~~v~ 166 (338)
+..|...|||+|++..-.| ++.|+.+.-+.++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 6667778999999875433 4446555555554
No 283
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=60.05 E-value=31 Score=28.83 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=35.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCC----eEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE
Q 019633 135 LQLFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~----ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l 197 (338)
+.-|+-+||+.|+...-+|+++--. ..+..|+.+. .++.. +...-..+|.++.=.+|..+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la-~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFN-KMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHH-HHcCCCCCCEEEEEECCEEE
Confidence 4447788999999887777655322 2334444332 33433 55566679998643355443
No 284
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=59.90 E-value=12 Score=27.88 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=22.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHc------CCCeEEEEcC
Q 019633 135 LQLFEFEACPFCRRVREAITEL------DLSVEVFPCP 166 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~el------gi~ye~~~v~ 166 (338)
+.+|.-..||+|......|.++ ++.++.++++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 4577788999999888877764 3444445544
No 285
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=59.42 E-value=32 Score=27.26 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=33.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcC---CCeEEEEcCCCCCC-CHHHHHHhCCCCceeEEEeCCCCeEE
Q 019633 135 LQLFEFEACPFCRRVREAITELD---LSVEVFPCPKGSIR-HREMVRRLGGKEQFPFLIDPNTGVSM 197 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elg---i~ye~~~v~~~~~~-~~e~l~~~nP~~qVP~Lvd~n~g~~l 197 (338)
+..|..+||+.|+...-.|+++. -.+.+..++.++.. ..+.. +...-..+|.++.-.+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~-~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELC-RREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHH-HHcCCCcCCEEEEEeCCeEE
Confidence 44566789999997766665431 12333434332211 12333 44456678987543356543
No 286
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=58.13 E-value=13 Score=30.65 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=18.2
Q ss_pred CCceEEEEcCCChhHHHHHHHHHH
Q 019633 132 PTRLQLFEFEACPFCRRVREAITE 155 (338)
Q Consensus 132 ~~~l~LY~~~~cP~c~kVr~~L~e 155 (338)
+..+..|.-..||+|++....+..
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 346777888899999988766554
No 287
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=58.10 E-value=85 Score=24.21 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=32.7
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCC
Q 019633 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTG 194 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g 194 (338)
.+..|..+|||.|+...-.+.++ +..+.+..++-+. .+... +...-..+|.++.-.+|
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--~~~~~-~~~~i~~~Pt~~~~~~g 81 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ--EPGLS-GRFFVTALPTIYHAKDG 81 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC--CHhHH-HHcCCcccCEEEEeCCC
Confidence 47777788999999876555443 2233333333221 22333 34456688988643344
No 288
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=58.09 E-value=28 Score=25.36 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=35.9
Q ss_pred chhccccCChhhHHHHHHHHh-----cCCceEEEEcCCCCCCchHHHhHcCCCcccEEEc
Q 019633 256 LELFSYENNPYARIVREALCE-----LELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 310 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~E-----lgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d 310 (338)
+..+..+.|+.|+.+...+.+ .++.+..+++.. ..++.+..+...+|+++-
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~v~~~P~~~~ 69 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE----NPELAEEYGVRSIPTFLF 69 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC----ChhHHHhcCcccccEEEE
Confidence 445556789999988888876 566666666544 356667777788998653
No 289
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=57.51 E-value=23 Score=29.44 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=36.3
Q ss_pred cchhccccCChhhHHHHHHH----HhcCCceEEEEcCCCC----C---CchHHHhHcC----CCcccEEEcCCCC
Q 019633 255 KLELFSYENNPYARIVREAL----CELELPYILQNVGDGS----S---RTKLLVDITG----SKEVPYLIDPNTS 314 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL----~Elgi~ye~~~v~~g~----~---k~~~~l~~np----~g~VP~L~d~~~g 314 (338)
.+..|+.+.||+|+.+.-.| .+.++++-.++++... . +..+|.+..+ ...||+++.=.+|
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G 100 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG 100 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence 35566788999999754444 4455677777876432 1 2235656543 4459988643334
No 290
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=57.23 E-value=51 Score=27.64 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCChhHHHHHHHH----HHcCCCeEEEEcCCCC---CC--CHHHHHHhCCCC-ceeEEEeCCCCeEEecH
Q 019633 141 EACPFCRRVREAI----TELDLSVEVFPCPKGS---IR--HREMVRRLGGKE-QFPFLIDPNTGVSMYES 200 (338)
Q Consensus 141 ~~cP~c~kVr~~L----~elgi~ye~~~v~~~~---~~--~~e~l~~~nP~~-qVP~Lvd~n~g~~l~ES 200 (338)
.|||.|+.+.-.+ .+..-.+.++.|+-++ |. ..++. ....-. .+|.++.=++|..|.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~-~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR-TDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH-hccCcccCCCEEEEEcCCceecch
Confidence 6999999665444 4443234444443322 11 22333 222223 69999654455555553
No 291
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=57.08 E-value=14 Score=27.67 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=32.5
Q ss_pred CceEEEEcCCChhHHHHHHHHHH----c--CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 133 TRLQLFEFEACPFCRRVREAITE----L--DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~L~e----l--gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
.-+.+|.-++|+.|+...-.+.+ . +-.+.+..++... ..... +..+-..+|.++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~-~~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLC-SEYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--hHHHH-HhCCCCCCCEEE
Confidence 45777888899999987766644 3 2334444444322 23333 444566889884
No 292
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=56.97 E-value=75 Score=27.01 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=13.0
Q ss_pred ceEEEEcCCChhHHHHHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAI 153 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L 153 (338)
.+..|...+||.|+...-.|
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l 83 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYM 83 (173)
T ss_pred EEEEEECCcCHHHHHHHHHH
Confidence 34445577999998754433
No 293
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=56.80 E-value=21 Score=29.06 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=35.7
Q ss_pred chhc-cccCChhhHHHHHHHHhcC-----CceEEEEcCCCCCCchHHHhHcCCCcccEEEc
Q 019633 256 LELF-SYENNPYARIVREALCELE-----LPYILQNVGDGSSRTKLLVDITGSKEVPYLID 310 (338)
Q Consensus 256 l~Ly-~~~~sP~~rkVr~aL~Elg-----i~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d 310 (338)
+.++ .-+.||+|+.++..|.++. +.+..++++. .+++.+..+-..||+++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~----~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE----DKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc----CHHHHHHcCCCcCCEEEE
Confidence 4444 4578999998888887654 3444455443 467888889999998864
No 294
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=56.70 E-value=10 Score=29.03 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=29.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCC------eEEEEcCCCCCCCHHHHHHhCCCCceeEE
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLS------VEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~------ye~~~v~~~~~~~~e~l~~~nP~~qVP~L 188 (338)
.+.+|..++|+.|+.....++...-. +.+..++-+ ...+.. +..+-..+|.+
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~-~~~~i~~~P~~ 73 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT--AEKDLA-SRFGVSGFPTI 73 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc--chHHHH-HhCCCCcCCEE
Confidence 47788888999999876555443211 233333221 123333 44456789988
No 295
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=56.40 E-value=47 Score=25.94 Aligned_cols=53 Identities=23% Similarity=0.413 Sum_probs=30.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc----CCCeEE--EEcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 134 RLQLFEFEACPFCRRVREAITEL----DLSVEV--FPCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el----gi~ye~--~~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
.+..|..++|+.|+...-.+.++ +-.+.+ ++++.+ ..++.. +..+-..+|.++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~-~~~~i~~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLC-GKYGVQGFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHH-HHcCCCcCCEEE
Confidence 56677788999999876555443 222333 344432 233434 344566899885
No 296
>PF13728 TraF: F plasmid transfer operon protein
Probab=55.72 E-value=56 Score=30.09 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=38.9
Q ss_pred ceEEEEcCCChhHHH----HHHHHHHcCCCeEEEEcCCCC-------CCCHHHHHHhCCCCceeEE--EeCCCC
Q 019633 134 RLQLFEFEACPFCRR----VREAITELDLSVEVFPCPKGS-------IRHREMVRRLGGKEQFPFL--IDPNTG 194 (338)
Q Consensus 134 ~l~LY~~~~cP~c~k----Vr~~L~elgi~ye~~~v~~~~-------~~~~e~l~~~nP~~qVP~L--vd~n~g 194 (338)
.|.++.-..||+|.+ ++.+..+.|+.+..+.+|... ........+++ -..+|+| ++++++
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALFLVNPNTK 195 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEEEEECCCC
Confidence 466777779999975 455566779998888886321 12344444454 4599988 566554
No 297
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=55.22 E-value=32 Score=28.35 Aligned_cols=58 Identities=28% Similarity=0.380 Sum_probs=30.0
Q ss_pred CceEEEE--cCCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeC
Q 019633 133 TRLQLFE--FEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~--~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+.+.|+. ..+||.|++-.-.|.++ +..++++-|..++......+.+... -.+|++.|+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~-~~~p~~~D~ 88 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF-LPFPVYADP 88 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC-CCCeEEECC
Confidence 3454444 45899998755444432 2234455444333222222323333 368999985
No 298
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.59 E-value=22 Score=34.54 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=50.5
Q ss_pred cchhccccCChhhHHHHHHHHhcCCc----eEEEEc---CCCCCC------------------chHHHh----HcCCCcc
Q 019633 255 KLELFSYENNPYARIVREALCELELP----YILQNV---GDGSSR------------------TKLLVD----ITGSKEV 305 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~----ye~~~v---~~g~~k------------------~~~~l~----~np~g~V 305 (338)
...||---.||++.+..++-+.+|++ .-++.. .+|+.- .+-|.+ -++...|
T Consensus 51 RYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTV 130 (324)
T COG0435 51 RYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTV 130 (324)
T ss_pred eEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeE
Confidence 46788778999999988877777763 222211 233211 122333 2456779
Q ss_pred cEEEcCCCC-eeeccHHHHHHHHhhhcC
Q 019633 306 PYLIDPNTS-TQIGDYKKILSYLFQSYS 332 (338)
Q Consensus 306 P~L~d~~~g-~~l~ES~aI~~YL~~~y~ 332 (338)
|+|-|..+. ++--||..|++-++..|.
T Consensus 131 PVLwDk~~~tIVnNES~eIirm~N~aFd 158 (324)
T COG0435 131 PVLWDKKTQTIVNNESAEIIRMFNSAFD 158 (324)
T ss_pred EEEEecCCCeeecCCcHHHHHHHHHHHH
Confidence 999997644 455699999999886653
No 299
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=52.54 E-value=56 Score=25.40 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=29.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc----C--CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el----g--i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
-+..|..++|+.|++..-.++++ + +.+-.++++. .++.. +..+-..+|.++.
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~i~~~Pt~~~ 79 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK----YESLC-QQANIRAYPTIRL 79 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc----hHHHH-HHcCCCcccEEEE
Confidence 35567778999999876555433 2 2233334432 23333 4445678998853
No 300
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=51.25 E-value=39 Score=29.91 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=44.5
Q ss_pred CceEEEEcC--CChhHHHH----HHHHHHc-CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEecHHHHHH
Q 019633 133 TRLQLFEFE--ACPFCRRV----REAITEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (338)
Q Consensus 133 ~~l~LY~~~--~cP~c~kV----r~~L~el-gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~aI~~ 205 (338)
+.++||.|| .+|-|.+- |..+.+. ++..+++-|..++......+.+.++. ++|.|-|+ ++.
T Consensus 31 k~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L-~f~LLSD~-~~~---------- 98 (157)
T COG1225 31 KPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGL-TFPLLSDE-DGE---------- 98 (157)
T ss_pred CcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-CceeeECC-cHH----------
Confidence 479999998 57777543 3333322 45667777776665555555566655 49999995 332
Q ss_pred HHHHhhCCC
Q 019633 206 YLFQQYGKG 214 (338)
Q Consensus 206 YL~~~y~~~ 214 (338)
+.+.||..
T Consensus 99 -v~~~ygv~ 106 (157)
T COG1225 99 -VAEAYGVW 106 (157)
T ss_pred -HHHHhCcc
Confidence 67778753
No 301
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=51.23 E-value=25 Score=30.52 Aligned_cols=34 Identities=29% Similarity=0.551 Sum_probs=26.0
Q ss_pred eEEEEcCCChhHHHH----HHHHHHc-CCCeEEEEcCCC
Q 019633 135 LQLFEFEACPFCRRV----REAITEL-DLSVEVFPCPKG 168 (338)
Q Consensus 135 l~LY~~~~cP~c~kV----r~~L~el-gi~ye~~~v~~~ 168 (338)
+++|.-..||||... +.++++. ++.++.+++...
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 678888899999654 4455566 899999998754
No 302
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=51.02 E-value=35 Score=28.39 Aligned_cols=47 Identities=30% Similarity=0.503 Sum_probs=26.9
Q ss_pred CChhHHHHHHHHHHc-------CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeC
Q 019633 142 ACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 142 ~cP~c~kVr~~L~el-------gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+||.|++-.-.|.++ |+.+..+..+.+.. -.+++.+ . ...+|++.|+
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~-~-~~~~~~~~D~ 93 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKK-Y-GINFPVLSDP 93 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHH-T-TTTSEEEEET
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHh-h-CCCceEEech
Confidence 799999776555443 34444444443322 4445533 2 3368888884
No 303
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=50.97 E-value=47 Score=30.93 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=45.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEE------ecHHHH
Q 019633 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESGDI 203 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l------~ES~aI 203 (338)
-+..|.-+|||.|+...-.++++ +-.+.+..++-+. .++.. +...-..+|.++.=++|..+ ....+|
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~--~~~l~-~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L 131 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR--ALNLA-KRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKL 131 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc--cHHHH-HHcCCCcCCEEEEEECCEEEEeeCCCCCHHHH
Confidence 35667778999999776555443 3223343443222 23333 44556688988532255432 246788
Q ss_pred HHHHHHhhCCC
Q 019633 204 VNYLFQQYGKG 214 (338)
Q Consensus 204 ~~YL~~~y~~~ 214 (338)
.+|+.+.|...
T Consensus 132 ~~fi~~~~~~~ 142 (224)
T PTZ00443 132 AAFALGDFKKA 142 (224)
T ss_pred HHHHHHHHHhh
Confidence 89998888643
No 304
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=50.30 E-value=77 Score=28.18 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=18.0
Q ss_pred eEEEEcCCChhHHHHHHHH----HHcCCCeEEEE
Q 019633 135 LQLFEFEACPFCRRVREAI----TELDLSVEVFP 164 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L----~elgi~ye~~~ 164 (338)
+..|...+||.|++..-.+ ++.++++..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4456667999998754333 34455555444
No 305
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=49.76 E-value=40 Score=25.75 Aligned_cols=58 Identities=10% Similarity=0.057 Sum_probs=33.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcC----CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCe
Q 019633 135 LQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elg----i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~ 195 (338)
+..|.-+||+.|+...-.+.++. -.+.+..++-+. ..+.. +..+-..+|+++.=++|.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~-~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIA-QQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHH-HHcCCCCCCEEEEEeCCE
Confidence 45566779999998876665442 234444444322 33333 444566899996323564
No 306
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=49.66 E-value=18 Score=29.17 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=34.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCC---eEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEe
Q 019633 135 LQLFEFEACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elgi~---ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ 198 (338)
+..|.-++|+.|+.+.-.++++--. +.+..++.+.. .+.+...-..+|.++.=.+|..+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~----~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA----FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh----HHHHhcCCCcCCEEEEEECCEEEE
Confidence 4556678999999887766654222 23333432221 333444566899986433665543
No 307
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=49.12 E-value=65 Score=24.98 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=29.3
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
-+..|..+||+.|+...-.+.++ +-.+.+..++-+. .+... +...-..+|.++
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~-~~~~v~~~Pt~~ 77 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLC-RSQGVNSYPSLY 77 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHH-HHcCCCccCEEE
Confidence 35567778999999766555433 2123333333222 23333 334456889884
No 308
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=49.02 E-value=12 Score=29.53 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=29.2
Q ss_pred ceEEEEcCCChhHHHHHHHHHH----c---CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLFEFEACPFCRRVREAITE----L---DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~e----l---gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
-+..|..+|||.|++..-.+.+ . +..+.+..++-.. .++.. +...-..+|.++.
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--~~~~~-~~~~I~~~Pt~~l 78 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--YSSIA-SEFGVRGYPTIKL 78 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--CHhHH-hhcCCccccEEEE
Confidence 4566777899999966544432 2 3333333333211 22333 3445567999864
No 309
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.75 E-value=37 Score=28.97 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=40.6
Q ss_pred CCChhHHHH----HHHHHHcCCCeEEEEcCCC---CCCCHHHHHHhCCC--CceeEEEeCC-CCeEEecHHHHHHHHHH
Q 019633 141 EACPFCRRV----REAITELDLSVEVFPCPKG---SIRHREMVRRLGGK--EQFPFLIDPN-TGVSMYESGDIVNYLFQ 209 (338)
Q Consensus 141 ~~cP~c~kV----r~~L~elgi~ye~~~v~~~---~~~~~e~l~~~nP~--~qVP~Lvd~n-~g~~l~ES~aI~~YL~~ 209 (338)
.|||.|.++ +.+|++...+..++.|.-| .|+.+.--.+..|. .-||.|+--. .+..+-+...-...|.+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 389999865 5677777777777666433 34332211123332 4689996532 44557666666666654
No 310
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=48.59 E-value=26 Score=36.30 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=47.7
Q ss_pred cchhccccCChhhHHHHHHHHhcCC--ceEE-EEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeecc----HHHHHHHH
Q 019633 255 KLELFSYENNPYARIVREALCELEL--PYIL-QNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGD----YKKILSYL 327 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi--~ye~-~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~E----S~aI~~YL 327 (338)
.+++|..+.||||..+..++.++-+ |+.. ..++ ....+++.+...-..||.++.++ ..+++ -..|++.|
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id--~~~~~~~~~~~~v~~VP~~~i~~--~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMID--GALFQDEVEARNIMAVPTVFLNG--EEFGQGRMTLEEILAKL 194 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEE--chhCHhHHHhcCCcccCEEEECC--cEEEecCCCHHHHHHHH
Confidence 4788888999999988887765433 2222 2222 34668888888889999998743 22332 34666776
Q ss_pred hhhc
Q 019633 328 FQSY 331 (338)
Q Consensus 328 ~~~y 331 (338)
.+..
T Consensus 195 ~~~~ 198 (517)
T PRK15317 195 DTGA 198 (517)
T ss_pred hccc
Confidence 6543
No 311
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=47.84 E-value=82 Score=30.07 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=33.6
Q ss_pred eEEEEcCCChhHHHHHHHH----HHcCCCeEEEEcCCCCC-------CCHHHHHHhCCCCceeEE--EeCCCCe
Q 019633 135 LQLFEFEACPFCRRVREAI----TELDLSVEVFPCPKGSI-------RHREMVRRLGGKEQFPFL--IDPNTGV 195 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L----~elgi~ye~~~v~~~~~-------~~~e~l~~~nP~~qVP~L--vd~n~g~ 195 (338)
+..|.-.+||+|+...-.| ++.|+.+..+.++.+.. ...... +..+-..+|.+ +++|+|.
T Consensus 170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCCCE
Confidence 4445566899999765444 34566555566653211 112333 33456689988 4554453
No 312
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=47.37 E-value=39 Score=26.92 Aligned_cols=57 Identities=30% Similarity=0.578 Sum_probs=29.9
Q ss_pred CceEEEEcC--CChhHHHHHHHHHHc-----CCCeEEEEcCCCCCC-CHHHHHHhCCCCceeEEEeC
Q 019633 133 TRLQLFEFE--ACPFCRRVREAITEL-----DLSVEVFPCPKGSIR-HREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~~~--~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~-~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+++.|+.+. +||.|+...-.|.++ ...+.++-+..+... ..++..+.+ ..+|++.|+
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~--~~~~~~~D~ 90 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG--LPFPVLSDP 90 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT--CSSEEEEET
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc--cccccccCc
Confidence 344444433 699998766555433 223444444333222 233443333 578999885
No 313
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=47.12 E-value=64 Score=24.65 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=29.2
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc-----C--CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 134 RLQLFEFEACPFCRRVREAITEL-----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el-----g--i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
.+..|..+||+.|+...-.+.++ + -.+.+..++-+. ..... +...-..+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~-~~~~v~~~Pt~~ 78 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--HRELC-SEFQVRGYPTLL 78 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--ChhhH-hhcCCCcCCEEE
Confidence 56667788999999765544332 2 134444443221 12223 334456799875
No 314
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=46.58 E-value=1.2e+02 Score=26.45 Aligned_cols=33 Identities=24% Similarity=0.597 Sum_probs=21.3
Q ss_pred ceEEEEcCCChhHHHHHHHHHH----cCCCeEEEEcC
Q 019633 134 RLQLFEFEACPFCRRVREAITE----LDLSVEVFPCP 166 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~e----lgi~ye~~~v~ 166 (338)
.+..|...|||+|++..=.|.+ .++.+..+.++
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d 89 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLD 89 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 3566667799999987655543 35555555554
No 315
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.33 E-value=36 Score=32.90 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=55.2
Q ss_pred CCCCCceEEEEcCCC------hhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCC----CCceeEEEeCCCCeEEe
Q 019633 129 SDSPTRLQLFEFEAC------PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG----KEQFPFLIDPNTGVSMY 198 (338)
Q Consensus 129 ~~p~~~l~LY~~~~c------P~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP----~~qVP~Lvd~n~g~~l~ 198 (338)
|..+..+++|.--.= -.|..||.+|+-.++.|+.++|..+. ..++++..+-+ ...+|.+.. .|..|.
T Consensus 127 Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~-~fr~EL~~~lg~~~~~~~LPrVFV--~GryIG 203 (281)
T KOG2824|consen 127 PGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDS-EFREELQELLGEDEKAVSLPRVFV--KGRYIG 203 (281)
T ss_pred CCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccH-HHHHHHHHHHhcccccCccCeEEE--ccEEec
Confidence 456778999975311 15899999999999999999998754 45566655443 357888877 788888
Q ss_pred cHHHHHHH
Q 019633 199 ESGDIVNY 206 (338)
Q Consensus 199 ES~aI~~Y 206 (338)
....|++.
T Consensus 204 gaeeV~~L 211 (281)
T KOG2824|consen 204 GAEEVVRL 211 (281)
T ss_pred cHHHhhhh
Confidence 87777664
No 316
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=45.96 E-value=42 Score=27.37 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=30.2
Q ss_pred CceEEEEc--CCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCC-CHHHHHHhCCCCceeEEEeC
Q 019633 133 TRLQLFEF--EACPFCRRVREAITEL-----DLSVEVFPCPKGSIR-HREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~~--~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~-~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+++.|+.+ .+||.|......|.++ .-.+.++-+..++.. ...+. +..+...+|+|.|+
T Consensus 23 k~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~-~~~~~~~~~~l~D~ 88 (140)
T cd02971 23 KWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWA-EKEGGLNFPLLSDP 88 (140)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hcccCCCceEEECC
Confidence 45555555 4799998754444332 123445544433322 22333 33434578999874
No 317
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=45.77 E-value=84 Score=27.28 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=15.2
Q ss_pred CceEE-EEcCCChhHHHHHHHHHH
Q 019633 133 TRLQL-FEFEACPFCRRVREAITE 155 (338)
Q Consensus 133 ~~l~L-Y~~~~cP~c~kVr~~L~e 155 (338)
+.+.| |.-.+||.|++..=.|.+
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHH
Confidence 34444 445589999988766654
No 318
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=45.74 E-value=60 Score=27.33 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=31.0
Q ss_pred CChhHHHHH----HHHHHcCCCeEEEEcCCC---CCCCHH-HHHHhCC---CCceeEEEeCCCCeEEecHHH
Q 019633 142 ACPFCRRVR----EAITELDLSVEVFPCPKG---SIRHRE-MVRRLGG---KEQFPFLIDPNTGVSMYESGD 202 (338)
Q Consensus 142 ~cP~c~kVr----~~L~elgi~ye~~~v~~~---~~~~~e-~l~~~nP---~~qVP~Lvd~n~g~~l~ES~a 202 (338)
|||.|+++. .++....-...++.|.-| .|+.+. .+ +.+| ..-||.|+--+++..|.|...
T Consensus 37 WCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~f-R~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 37 WCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPF-RTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp SSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHH-HH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCc-eEcceeeeeecceEEEECCCCccchhhh
Confidence 899999776 455554334555444322 233322 12 3333 557999986656777777543
No 319
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=45.65 E-value=27 Score=29.92 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.7
Q ss_pred CCceEEEEcCCChhHHHHHHHHHH
Q 019633 132 PTRLQLFEFEACPFCRRVREAITE 155 (338)
Q Consensus 132 ~~~l~LY~~~~cP~c~kVr~~L~e 155 (338)
+..+..|....||+|++..-.+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 345677777789999988766653
No 320
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.29 E-value=1e+02 Score=27.72 Aligned_cols=81 Identities=22% Similarity=0.362 Sum_probs=46.0
Q ss_pred CCCCceEEEEcCCChhHH----------HHHHHHHHc------CCCeE-EEEcCCCC---CCCHHHHHHhCCCCceeEEE
Q 019633 130 DSPTRLQLFEFEACPFCR----------RVREAITEL------DLSVE-VFPCPKGS---IRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 130 ~p~~~l~LY~~~~cP~c~----------kVr~~L~el------gi~ye-~~~v~~~~---~~~~e~l~~~nP~~qVP~Lv 189 (338)
.....+.+++.+.|+||. ++|+.|.+. ++.+. .+....|+ ....+++.+.......|.++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 344577889999999996 455666652 22221 11111121 12334455666666778775
Q ss_pred --eCCCCeEEec---------HHHHHHHHHHhh
Q 019633 190 --DPNTGVSMYE---------SGDIVNYLFQQY 211 (338)
Q Consensus 190 --d~n~g~~l~E---------S~aI~~YL~~~y 211 (338)
|. +|..|.+ =.+|++|+++-+
T Consensus 121 Ffdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 121 FFDK-TGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred EEcC-CCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 54 5555543 467888887643
No 321
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=44.56 E-value=34 Score=35.45 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=46.9
Q ss_pred cchhccccCChhhHHHHHHHHhcCC--ceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeecc----HHHHHHHHh
Q 019633 255 KLELFSYENNPYARIVREALCELEL--PYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGD----YKKILSYLF 328 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi--~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~E----S~aI~~YL~ 328 (338)
.+++|..+.||||..+..++.++-+ |.....+ -+....+++.+...-..||.++.++ ..+++ -..+++.|.
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~-id~~~~~~~~~~~~v~~VP~~~i~~--~~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTM-IDGALFQDEVEALGIQGVPAVFLNG--EEFHNGRMDLAELLEKLE 196 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEE-EEchhCHHHHHhcCCcccCEEEECC--cEEEecCCCHHHHHHHHh
Confidence 4778888999999988888876543 2222222 1124567888888888999998643 23333 245556665
Q ss_pred hh
Q 019633 329 QS 330 (338)
Q Consensus 329 ~~ 330 (338)
+.
T Consensus 197 ~~ 198 (515)
T TIGR03140 197 ET 198 (515)
T ss_pred hc
Confidence 44
No 322
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=44.10 E-value=25 Score=29.55 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=17.7
Q ss_pred CCCceEEEEcCCChhHHHHHHHHH
Q 019633 131 SPTRLQLFEFEACPFCRRVREAIT 154 (338)
Q Consensus 131 p~~~l~LY~~~~cP~c~kVr~~L~ 154 (338)
.+..+++|.-..||+|++....+.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHHh
Confidence 344688899999999998866553
No 323
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=43.79 E-value=64 Score=26.31 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=12.8
Q ss_pred eEEEEcCCChhHHHHHHHHH
Q 019633 135 LQLFEFEACPFCRRVREAIT 154 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~ 154 (338)
+..+...+||.|++..-.|.
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEECCCChHHHHHhHHHH
Confidence 33344568999997655443
No 324
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=43.33 E-value=33 Score=27.03 Aligned_cols=54 Identities=22% Similarity=0.567 Sum_probs=26.1
Q ss_pred EEEEcCCChhHHHHHHHHHHcC----CCeEEEEcCCCCC-CCHHHHHHhCCCCceeEEEe
Q 019633 136 QLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 136 ~LY~~~~cP~c~kVr~~L~elg----i~ye~~~v~~~~~-~~~e~l~~~nP~~qVP~Lvd 190 (338)
..|.-.+||.|++..-.|.++. -.+.++.+..++. ...+++ +..+...+|++.+
T Consensus 26 l~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~-~~~~~~~~p~~~~ 84 (114)
T cd02967 26 LFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFL-KKHGLEAFPYVLS 84 (114)
T ss_pred EEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHH-HHhCCCCCcEEec
Confidence 3344568999997655554431 1233333322221 222333 3444445777653
No 325
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=43.17 E-value=29 Score=26.62 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=30.3
Q ss_pred ceEEEEcCCChhHHHHHHHHHH----cC--CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 134 RLQLFEFEACPFCRRVREAITE----LD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~e----lg--i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
-+..|..++|+.|+...-.+.+ +. -.+.+..++.... ..... +..+-..+|.++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~-~~~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-NKDLA-KKYGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-chhhH-HhCCCCCcCEEE
Confidence 4667778899999876544433 22 2344444442220 23333 333456799885
No 326
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.17 E-value=62 Score=31.80 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=41.8
Q ss_pred CChhhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 263 NNPYARIVREALCELELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 263 ~sP~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
.++-|..+.+.+.-.+-|..++..... -++|.|++|+|+++| |..+..-..|+.||.+
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~--------~~s~sg~LP~l~~~n-g~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNP--------WRSPSGKLPYLITDN-GTKVAGPVKIVQFLKK 73 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCC--------CCCCCCCCCeEEecC-CceeccHHHHHHHHHH
Confidence 366777777777666644444333232 346899999999874 6889999999999987
No 327
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=42.63 E-value=24 Score=27.07 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=16.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc
Q 019633 134 RLQLFEFEACPFCRRVREAITEL 156 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el 156 (338)
.+.+|..++|+.|+...-.+.++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~ 43 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEEL 43 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHH
Confidence 46667788999999876655443
No 328
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=42.14 E-value=74 Score=26.17 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=30.4
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCC----eEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~----ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
-+..|.-+||+.|+...-.++++.-. ..+..++-+. ..+...+...-..+|.|..
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~--~~~l~~~~~~I~~~PTl~l 90 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW--PQGKCRKQKHFFYFPVIHL 90 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--ChHHHHHhcCCcccCEEEE
Confidence 46678888999999887666655322 2333333221 2222212334457888853
No 329
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=41.47 E-value=23 Score=28.18 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=30.3
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCC---eEEEEcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~---ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
-+..|.-+||+.|+...-.++++.-. +.+..++..+ ..++.. +...-..+|.++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~-~~~~l~-~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESS-IKPSLL-SRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCC-CCHHHH-HhcCCeecCEEE
Confidence 45667778999999877666544211 2233343221 233333 444566889775
No 330
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=40.86 E-value=53 Score=28.67 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=33.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcC-----CCeEEEEcCCCCCCCHHHHHHhCCC-----CceeEEEeCCCCeEEe
Q 019633 135 LQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGK-----EQFPFLIDPNTGVSMY 198 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~elg-----i~ye~~~v~~~~~~~~e~l~~~nP~-----~qVP~Lvd~n~g~~l~ 198 (338)
+..|..+|||.|+...-.++++- -.+.+..++-+. .++...+.+-. .++|.++.=.+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 56677789999998776555442 123444443322 22333222211 3489886434676654
No 331
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=40.73 E-value=83 Score=24.34 Aligned_cols=51 Identities=12% Similarity=0.266 Sum_probs=33.6
Q ss_pred cchhccccCChhhHHHHHHHHh----cC--CceEEEEcCCCCCCchHHHhHcCCCcccEEE
Q 019633 255 KLELFSYENNPYARIVREALCE----LE--LPYILQNVGDGSSRTKLLVDITGSKEVPYLI 309 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~E----lg--i~ye~~~v~~g~~k~~~~l~~np~g~VP~L~ 309 (338)
.+..|.-+.|+.|+.....+.+ .+ +.+..++++ +.+++.+..+-..+|+++
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~ 72 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQ 72 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEE
Confidence 4556666899999977776654 22 334444443 345677777888999775
No 332
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=40.63 E-value=70 Score=28.26 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=12.7
Q ss_pred EEcCCChhHHHHHHHHHHc
Q 019633 138 FEFEACPFCRRVREAITEL 156 (338)
Q Consensus 138 Y~~~~cP~c~kVr~~L~el 156 (338)
|...+||.|++-.-.|.++
T Consensus 75 FwatwC~~C~~e~p~l~~l 93 (185)
T PRK15412 75 VWATWCPTCRAEHQYLNQL 93 (185)
T ss_pred EECCCCHHHHHHHHHHHHH
Confidence 4456999998765555443
No 333
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=40.62 E-value=1.1e+02 Score=23.42 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=28.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHc----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 135 LQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~el----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
+.++.-++|+.|+...-.+.++ .-.+.+..++.+ ...+...+. +-..+|.++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~-~i~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD--VHQSLAQQY-GVRGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc--chHHHHHHC-CCCccCEEE
Confidence 5566678999999876544432 222333333322 123334333 445799774
No 334
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=39.77 E-value=45 Score=26.09 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=34.2
Q ss_pred cchhccccCChhhHHHHHHH------H-hc--CCceEEEEcCCCCCCchHHHhHcCCCcccEEE
Q 019633 255 KLELFSYENNPYARIVREAL------C-EL--ELPYILQNVGDGSSRTKLLVDITGSKEVPYLI 309 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL------~-El--gi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~ 309 (338)
.+..|..+.|++|+.....+ . ++ ++.+..++++.......++.+..+-..+|+++
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 34456668899999765332 1 11 34444455544333357888888888999775
No 335
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=39.73 E-value=1.2e+02 Score=24.33 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=35.2
Q ss_pred CceE-EEEcCCChhHHHH-HHHH------HHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEE--eCCCCeE
Q 019633 133 TRLQ-LFEFEACPFCRRV-REAI------TELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI--DPNTGVS 196 (338)
Q Consensus 133 ~~l~-LY~~~~cP~c~kV-r~~L------~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lv--d~n~g~~ 196 (338)
+.+- .++.++|++|.+. +.+| +.++=.|....++..+....++. ...+...+|+++ ++.+|..
T Consensus 18 K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 18 KWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFL-QSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred ceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHH-HHhCccCCCeEEEEeCccCcE
Confidence 3444 4456689999875 3233 23333566666655443344444 556677899984 5534543
No 336
>PLN02309 5'-adenylylsulfate reductase
Probab=39.36 E-value=1.8e+02 Score=30.10 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=31.5
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
-+..|+-+||++|+...-.++++ +-.+.+..++-+. ...+...+...-..+|.|+.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-DQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-cchHHHHhhCCCceeeEEEE
Confidence 46778889999999766555443 2234444443221 12233322334668999853
No 337
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=38.36 E-value=44 Score=28.99 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=22.5
Q ss_pred eEEEEcCCChhHHHHHH----HHHHcCCCeEEEEcC
Q 019633 135 LQLFEFEACPFCRRVRE----AITELDLSVEVFPCP 166 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~----~L~elgi~ye~~~v~ 166 (338)
+.+|.-..||||..... +..+.++.++.+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 45788889999976543 444667777777764
No 338
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=38.20 E-value=88 Score=27.20 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=14.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHc
Q 019633 135 LQLFEFEACPFCRRVREAITEL 156 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~el 156 (338)
+..|...+||.|++..-.|.++
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHH
Confidence 3445567999999876555444
No 339
>smart00594 UAS UAS domain.
Probab=37.52 E-value=1.3e+02 Score=24.69 Aligned_cols=62 Identities=13% Similarity=0.278 Sum_probs=34.2
Q ss_pred CceEEEEcCCChhHHHH-HHHH------HHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEE--EeCCCCe
Q 019633 133 TRLQLFEFEACPFCRRV-REAI------TELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGV 195 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kV-r~~L------~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~L--vd~n~g~ 195 (338)
..+...+.++|+.|.+. |.++ +.++=.|-...++-.+....+.. ......++|.+ +++++|.
T Consensus 29 ~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 29 LLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVS-QFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred CEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHH-HhcCcCCCCEEEEEecCCCc
Confidence 34555667789998752 3222 22222466555554333344444 44445679988 4676654
No 340
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=37.20 E-value=1.5e+02 Score=28.27 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=37.6
Q ss_pred ceEEEEcCCChhHHHH----HHHHHHcCCCeEEEEcCCCCC-C------CHHHHHHhCCCCceeEE--EeCCCC
Q 019633 134 RLQLFEFEACPFCRRV----REAITELDLSVEVFPCPKGSI-R------HREMVRRLGGKEQFPFL--IDPNTG 194 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kV----r~~L~elgi~ye~~~v~~~~~-~------~~e~l~~~nP~~qVP~L--vd~n~g 194 (338)
.+.++.-..||+|.+- +.+-+..|+++..+.+|.... . ......++ +-..+|+| ++++++
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALYLVNPKSQ 225 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEEEEECCCC
Confidence 4666666789999854 445577799988888874311 1 12223233 35679988 566555
No 341
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=36.72 E-value=44 Score=29.69 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=34.6
Q ss_pred ceEE-EEcCCChhHHHHHHHHHHcCC---CeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEe
Q 019633 134 RLQL-FEFEACPFCRRVREAITELDL---SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (338)
Q Consensus 134 ~l~L-Y~~~~cP~c~kVr~~L~elgi---~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ 198 (338)
.+.+ |+-++|+.|+.+.-.|..+-- .+.++.|+-+.. .+....+-..+|+|+.=.+|..+.
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~----~l~~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT----GASDEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch----hhHHhCCCCCCCEEEEEECCEEEE
Confidence 3443 555799999977655554422 233444443221 243556677899986444675544
No 342
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=36.65 E-value=2.6e+02 Score=27.65 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=43.7
Q ss_pred ceEEEEcCCChhHHHHHHHHH-------HcC--CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeE-------E
Q 019633 134 RLQLFEFEACPFCRRVREAIT-------ELD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS-------M 197 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~-------elg--i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~-------l 197 (338)
.+.+|..+||+.|++..-.+. ..+ +.+-.++|+.. .+.. +..+-..+|.++.=++|.. .
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~-~~~~i~~~Pt~~~~~~g~~~~~~~~g~ 95 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE----KDLA-QKYGVSGYPTLKIFRNGEDSVSDYNGP 95 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc----HHHH-HhCCCccccEEEEEeCCccceeEecCC
Confidence 467788889999997653332 223 34444455432 2333 3344557897742223332 2
Q ss_pred ecHHHHHHHHHHhhCC
Q 019633 198 YESGDIVNYLFQQYGK 213 (338)
Q Consensus 198 ~ES~aI~~YL~~~y~~ 213 (338)
....+|.+|+.+..+.
T Consensus 96 ~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 96 RDADGIVKYMKKQSGP 111 (462)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 3678899999887653
No 343
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=36.25 E-value=67 Score=24.26 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=15.7
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc
Q 019633 134 RLQLFEFEACPFCRRVREAITEL 156 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el 156 (338)
.+..|...+||.|++....|.++
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHH
Confidence 45566677999998765555443
No 344
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=36.07 E-value=57 Score=29.35 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=24.9
Q ss_pred ceEEEEcCCChhHHHH----HHHHHHcCCCeEEEEcCC
Q 019633 134 RLQLFEFEACPFCRRV----REAITELDLSVEVFPCPK 167 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kV----r~~L~elgi~ye~~~v~~ 167 (338)
.|.+|+-..||||... +.++.+.+++++.+++..
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 4788998899999755 344556678878777644
No 345
>PF13728 TraF: F plasmid transfer operon protein
Probab=35.66 E-value=1.1e+02 Score=28.08 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=39.1
Q ss_pred chhccccCChhhH----HHHHHHHhcCCceEEEEcCCCC-------CCchHHHhHcCCCcccEE--EcCCC
Q 019633 256 LELFSYENNPYAR----IVREALCELELPYILQNVGDGS-------SRTKLLVDITGSKEVPYL--IDPNT 313 (338)
Q Consensus 256 l~Ly~~~~sP~~r----kVr~aL~Elgi~ye~~~v~~g~-------~k~~~~l~~np~g~VP~L--~d~~~ 313 (338)
|-++.-..||+|. .++.+..+.|+....+.++... .......+.-+-..+|+| +++++
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 4455567899997 5666677889988888886431 123455555666789966 45555
No 346
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=34.79 E-value=88 Score=25.50 Aligned_cols=57 Identities=25% Similarity=0.457 Sum_probs=28.5
Q ss_pred CceEEEEc--CCChhHHHHHHHHHHc-----CCCeEEEEcCCCCC-CCHHHHHHhCCCCceeEEEeC
Q 019633 133 TRLQLFEF--EACPFCRRVREAITEL-----DLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~~--~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~-~~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+.+.|+.+ .+||.|.+....|.++ +-.++++.+..+.. ...++. +.++. .+|+|.|+
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~-~~~~~-~~~~l~D~ 88 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFA-EKYGL-PFPLLSDP 88 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCC-CceEEECC
Confidence 34555554 5799997643333222 12345555543322 223444 33333 58888874
No 347
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=33.52 E-value=40 Score=25.65 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=45.2
Q ss_pred cchhccccCChhhHHHHHHHHh----cCCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCee------eccHHHHH
Q 019633 255 KLELFSYENNPYARIVREALCE----LELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQ------IGDYKKIL 324 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~E----lgi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~------l~ES~aI~ 324 (338)
.+..+..+.|+.|+..+-.+.+ .+-+.....|+.. +.+++.+...-..+|.++--.+|.. ..+...|.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 3445556789999977755532 2213444444332 3477888888999998753222321 23677888
Q ss_pred HHHhhh
Q 019633 325 SYLFQS 330 (338)
Q Consensus 325 ~YL~~~ 330 (338)
++|+++
T Consensus 98 ~~i~~~ 103 (103)
T PF00085_consen 98 EFIEKH 103 (103)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 888753
No 348
>PTZ00102 disulphide isomerase; Provisional
Probab=32.39 E-value=2.5e+02 Score=28.21 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=43.9
Q ss_pred CceEEEEcCCChhHHHHHHH-------HHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCe-E----EecH
Q 019633 133 TRLQLFEFEACPFCRRVREA-------ITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV-S----MYES 200 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~kVr~~-------L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~-~----l~ES 200 (338)
.-+..|..+||+.|++..-. +.+.+-++.+..++-. ...+.. +..+-..+|.++.=++|. . -...
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~--~~~~l~-~~~~i~~~Pt~~~~~~g~~~~y~g~~~~ 127 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT--EEMELA-QEFGVRGYPTIKFFNKGNPVNYSGGRTA 127 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC--CCHHHH-HhcCCCcccEEEEEECCceEEecCCCCH
Confidence 35777888899999876422 2222333444433321 123333 334455789874222332 2 2357
Q ss_pred HHHHHHHHHhhCC
Q 019633 201 GDIVNYLFQQYGK 213 (338)
Q Consensus 201 ~aI~~YL~~~y~~ 213 (338)
..|++||.+..+.
T Consensus 128 ~~l~~~l~~~~~~ 140 (477)
T PTZ00102 128 DGIVSWIKKLTGP 140 (477)
T ss_pred HHHHHHHHHhhCC
Confidence 8899999887654
No 349
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.33 E-value=84 Score=30.45 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=48.5
Q ss_pred cchhccccCChhhHHHHHHHHhcCCc----eEEEEc---CCCC-------------------------CCchHHHh-H--
Q 019633 255 KLELFSYENNPYARIVREALCELELP----YILQNV---GDGS-------------------------SRTKLLVD-I-- 299 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rkVr~aL~Elgi~----ye~~~v---~~g~-------------------------~k~~~~l~-~-- 299 (338)
..-||.--.||++.+..+.++.+|++ +..+.. ++|+ ....++.. .
T Consensus 37 ryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p 116 (319)
T KOG2903|consen 37 RYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASP 116 (319)
T ss_pred eEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCC
Confidence 46677777899999999999998874 333322 1121 01123322 2
Q ss_pred --cCCCcccEEEcCCCC-eeeccHHHHHHHHhh
Q 019633 300 --TGSKEVPYLIDPNTS-TQIGDYKKILSYLFQ 329 (338)
Q Consensus 300 --np~g~VP~L~d~~~g-~~l~ES~aI~~YL~~ 329 (338)
.+.-.||+|=|-.+- ++=-||.+|++.+..
T Consensus 117 ~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs 149 (319)
T KOG2903|consen 117 NYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNS 149 (319)
T ss_pred CCCceEEEEEEEccccceeecCchHHHHHHHhh
Confidence 245569999885432 455699999999983
No 350
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=32.11 E-value=52 Score=28.87 Aligned_cols=32 Identities=28% Similarity=0.637 Sum_probs=21.3
Q ss_pred eEEEEcCCChhHHHHHH----HHHHc----CCCeEEEEcC
Q 019633 135 LQLFEFEACPFCRRVRE----AITEL----DLSVEVFPCP 166 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~----~L~el----gi~ye~~~v~ 166 (338)
|.+|....||||..... ++++. ++.++.+++.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~ 40 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFE 40 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeee
Confidence 46788889999985544 44555 5666666653
No 351
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.36 E-value=82 Score=25.07 Aligned_cols=65 Identities=8% Similarity=0.048 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHHhcCCceEEEEcCCCC---------------C---CchHHHhHcCCCcccEEEcCCCCeeeccHHHHHH
Q 019633 264 NPYARIVREALCELELPYILQNVGDGS---------------S---RTKLLVDITGSKEVPYLIDPNTSTQIGDYKKILS 325 (338)
Q Consensus 264 sP~~rkVr~aL~Elgi~ye~~~v~~g~---------------~---k~~~~l~~np~g~VP~L~d~~~g~~l~ES~aI~~ 325 (338)
|-.+.+++..+.+.|++++...+.-.+ + ..+++.+......+|+...+.......+..+|+.
T Consensus 13 S~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~dg~~il~ 92 (96)
T cd05564 13 SILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMNGEKVLK 92 (96)
T ss_pred HHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccCCHHHHHH
Confidence 345678888889999888776653211 1 1234444445567898887655667788888887
Q ss_pred HHh
Q 019633 326 YLF 328 (338)
Q Consensus 326 YL~ 328 (338)
.+.
T Consensus 93 ~~~ 95 (96)
T cd05564 93 QAL 95 (96)
T ss_pred HHh
Confidence 653
No 352
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=31.31 E-value=1.2e+02 Score=24.20 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=27.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcCCCeEEEEc--CCCC-CCCHHHHHHhCCCCceeEEEeC
Q 019633 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPC--PKGS-IRHREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elgi~ye~~~v--~~~~-~~~~e~l~~~nP~~qVP~Lvd~ 191 (338)
.+..|...+||.|+...-.|..+.-.+.++.+ +.++ ....++. +..+ ..+|++.|+
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~-~~~~~~~d~ 81 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFM-QKKG-YGFPVINDP 81 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHH-HHcC-CCccEEECC
Confidence 45556677899999775555433222443333 3221 1122333 2332 256777664
No 353
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=30.51 E-value=1.4e+02 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=14.8
Q ss_pred eEEEEcCCChhHHHHHHHHHHc
Q 019633 135 LQLFEFEACPFCRRVREAITEL 156 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~el 156 (338)
+..|...+||.|+...-.|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 4445567999999766555544
No 354
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=29.16 E-value=2.5e+02 Score=29.73 Aligned_cols=53 Identities=8% Similarity=0.169 Sum_probs=29.2
Q ss_pred eEEEEcCCChhHHHHHHH-------HHHcCCCeEEE--EcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 135 LQLFEFEACPFCRRVREA-------ITELDLSVEVF--PCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~-------L~elgi~ye~~--~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
+.-|+-+||+.|+..... .++++ ++.+. +++..+...++.. +..+..-+|.++
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~-~~~~v~g~Pt~~ 539 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALL-KHYNVLGLPTIL 539 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHH-HHcCCCCCCEEE
Confidence 444667899999875332 12332 34444 4444333344444 444566789885
No 355
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=28.57 E-value=2.5e+02 Score=26.66 Aligned_cols=61 Identities=25% Similarity=0.305 Sum_probs=37.6
Q ss_pred CceEEEEcCCChhHHH----HHHHHHHcCCCeEEEEcCCCC-CC------CHHHHHHhCCCCceeEE--EeCCCC
Q 019633 133 TRLQLFEFEACPFCRR----VREAITELDLSVEVFPCPKGS-IR------HREMVRRLGGKEQFPFL--IDPNTG 194 (338)
Q Consensus 133 ~~l~LY~~~~cP~c~k----Vr~~L~elgi~ye~~~v~~~~-~~------~~e~l~~~nP~~qVP~L--vd~n~g 194 (338)
..+.++.-..||+|.+ ++.+-+..|+++..+.+|... +. ......+++ ...+|+| ++++++
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~-v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLG-VKYFPALMLVDPKSG 218 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcC-CcccceEEEEECCCC
Confidence 3566666678999975 455667789988888876321 11 112222333 4578988 566565
No 356
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.49 E-value=96 Score=29.14 Aligned_cols=27 Identities=30% Similarity=0.716 Sum_probs=18.2
Q ss_pred ceEEEEcCCChhHH----HHHHHHHHcCCCe
Q 019633 134 RLQLFEFEACPFCR----RVREAITELDLSV 160 (338)
Q Consensus 134 ~l~LY~~~~cP~c~----kVr~~L~elgi~y 160 (338)
.+.+|+-.-||+|. +.+.++.+.+-.+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 46778888999996 4445555665444
No 357
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=28.43 E-value=1.4e+02 Score=24.20 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=28.8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHcC---------CCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLFEFEACPFCRRVREAITELD---------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~elg---------i~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
-+..|..+||+.|+...-.++++. +.+-.++|+.+ ...+.. +...-..+|.++.
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~-~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALC-RDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHH-HhCCCCCCCEEEE
Confidence 355677789999987655544332 22222343321 223333 3344567898853
No 358
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=28.23 E-value=1.1e+02 Score=25.18 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=28.1
Q ss_pred CceEEEE--cCCChhHHHHHHHHHHc-----CCCeEEEEcCCCCC-CCHHHHHHhCCCCceeEEEeC
Q 019633 133 TRLQLFE--FEACPFCRRVREAITEL-----DLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~--~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~-~~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+.+.|+. ..+||.|++..-.|.++ +..+.++-+..+.. ...++. +..+ -.+|++.|+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~-~~~~-~~~~~~~D~ 93 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWA-EENG-LTFPLLSDF 93 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHH-HhcC-CCceEecCC
Confidence 4455544 45899998654444332 22344444443322 223344 3333 357777663
No 359
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=27.80 E-value=1.2e+02 Score=26.29 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=30.9
Q ss_pred CceEEEEcC--CChhHHHHHHHHHH----cCCCeEEEEcCCCCC-CCHHHHHHhCCCCceeEEEeC
Q 019633 133 TRLQLFEFE--ACPFCRRVREAITE----LDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~~~--~cP~c~kVr~~L~e----lgi~ye~~~v~~~~~-~~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+.+.|+.++ +||.|.+-.-.|.+ .+ .++++-+..+.. ...++. +..+...+|+|.|+
T Consensus 45 k~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~-~~~~~~~~~~lsD~ 108 (167)
T PRK00522 45 KRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFC-GAEGLENVITLSDF 108 (167)
T ss_pred CEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHH-HhCCCCCceEeecC
Confidence 345565554 49999875443433 22 456665554432 234444 44444457888873
No 360
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=27.64 E-value=1.4e+02 Score=25.68 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=31.9
Q ss_pred CceEEEEcC--CChhHHHH--------HHHHHHcCCCeEEEEcCCCCCCC-HHHHHHhCCC-CceeEEEeC
Q 019633 133 TRLQLFEFE--ACPFCRRV--------REAITELDLSVEVFPCPKGSIRH-REMVRRLGGK-EQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~~~--~cP~c~kV--------r~~L~elgi~ye~~~v~~~~~~~-~e~l~~~nP~-~qVP~Lvd~ 191 (338)
+.+.||.|+ +||.|..- ...+..+|+. +++-+..+.... .++. +.... ..+|+|-|+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~-~V~~iS~D~~~~~~~~~-~~~~~~~~f~lLsD~ 98 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVD-EVICVSVNDPFVMKAWG-KALGAKDKIRFLADG 98 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCC-EEEEEECCCHHHHHHHH-HhhCCCCcEEEEECC
Confidence 468888887 59999765 2333444552 244444333333 3344 33333 468999885
No 361
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=27.28 E-value=1.6e+02 Score=24.65 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=28.0
Q ss_pred CceEEEEcC--CChhHHHHHH-------HHHHcCCCeEEEEcCCCCC-CCHHHHHHhCCCCceeEEEeC
Q 019633 133 TRLQLFEFE--ACPFCRRVRE-------AITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~~~--~cP~c~kVr~-------~L~elgi~ye~~~v~~~~~-~~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+.+.|+.+. +||.|+.-.. .+...| ++++-+..+.. ...++.. .++ -.+|+|.|+
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~~~~~~~~~~-~~~-~~~~~l~D~ 95 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDKPEKLSRFAE-KEL-LNFTLLSDE 95 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHH-HhC-CCCeEEECC
Confidence 455555553 7898964322 333344 45555544332 2234443 333 368888774
No 362
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=27.03 E-value=1.9e+02 Score=26.20 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=32.2
Q ss_pred EEEcCCChhHHHH---HHHHHHcCCCe------EEEEcCCCCCCCHHHHH---HhCCCCcee---EEEeC
Q 019633 137 LFEFEACPFCRRV---REAITELDLSV------EVFPCPKGSIRHREMVR---RLGGKEQFP---FLIDP 191 (338)
Q Consensus 137 LY~~~~cP~c~kV---r~~L~elgi~y------e~~~v~~~~~~~~e~l~---~~nP~~qVP---~Lvd~ 191 (338)
-|.-.+||.|+.- ..+|+..|+++ ..++.+.+.+....+++ +.+ ....| ++.|+
T Consensus 65 n~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~-~~~~P~~~vllD~ 133 (184)
T TIGR01626 65 HHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKG-KKENPWSQVVLDD 133 (184)
T ss_pred EEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHh-cccCCcceEEECC
Confidence 3444489999854 45667778998 66776644334444543 111 22455 88885
No 363
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=26.67 E-value=2.5e+02 Score=22.27 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=37.5
Q ss_pred cccCChhhHHHHHHHHhcCC--ceEEEEcCCCCCCchHHH---hHc---CCCcccEEEcCCCCeeeccHHHHHHHHhh
Q 019633 260 SYENNPYARIVREALCELEL--PYILQNVGDGSSRTKLLV---DIT---GSKEVPYLIDPNTSTQIGDYKKILSYLFQ 329 (338)
Q Consensus 260 ~~~~sP~~rkVr~aL~Elgi--~ye~~~v~~g~~k~~~~l---~~n---p~g~VP~L~d~~~g~~l~ES~aI~~YL~~ 329 (338)
.-..||+|......+...+. .++.+++.. ....+++ .++ -...+ .++ ++++.....+.|+.+-+..
T Consensus 3 YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l-~~~-~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 3 YDGDCPLCRREVRFLRRRDRGGRLRFVDIQS--EPDQALLASYGISPEDADSRL-HLI-DDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred ECCCCHhHHHHHHHHHhcCCCCCEEEEECCC--hhhhhHHHhcCcCHHHHcCee-EEe-cCCCEEEEcHHHHHHHHHH
Confidence 34679999998888887764 355555422 1222222 221 12223 333 3333488899998887654
No 364
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=26.43 E-value=21 Score=30.20 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=26.5
Q ss_pred ceEEEEcCCChhHHHHH----HHHHHc-CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEe
Q 019633 134 RLQLFEFEACPFCRRVR----EAITEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr----~~L~el-gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd 190 (338)
.+.++.-.|||.|++.- -++++. +|++.++..+.....-..++ . ++...||.++.
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~l-t-~g~~~IP~~I~ 103 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYL-T-NGGRSIPTFIF 103 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTT-T--SS--SSEEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHH-h-CCCeecCEEEE
Confidence 56777788999997543 344555 66666665432111111122 2 77889999964
No 365
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.37 E-value=1e+02 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=21.1
Q ss_pred ceEEEEcCCChhHHHHH----HHHHHc--CCCeEEEEc
Q 019633 134 RLQLFEFEACPFCRRVR----EAITEL--DLSVEVFPC 165 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr----~~L~el--gi~ye~~~v 165 (338)
.|.+|.-..||||.... .++++. +++++.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~ 39 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLG 39 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEec
Confidence 37788889999996444 444454 566666543
No 366
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=25.21 E-value=1.2e+02 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHH
Q 019633 143 CPFCRRVREAITELDLSVEVFPCPKGSIRHREM 175 (338)
Q Consensus 143 cP~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~ 175 (338)
-|.+.+++..|+++|++|+++.+.. ++.++.
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~sa--HR~p~~ 43 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVASA--HRTPER 43 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--T--TTSHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEec--cCCHHH
Confidence 3789999999999999999988763 444443
No 367
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=25.13 E-value=77 Score=26.36 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=38.5
Q ss_pred CceEEEEcCC--ChhHHHHHHHHHHcCCCe----EEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCeEEec
Q 019633 133 TRLQLFEFEA--CPFCRRVREAITELDLSV----EVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (338)
Q Consensus 133 ~~l~LY~~~~--cP~c~kVr~~L~elgi~y----e~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~E 199 (338)
.-+.+|+-++ ||-|+.+.-+|+++--.| .+..++.++ .+ .+.....-..+|.|+.=.+|..+..
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~-~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQ-ALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CH-HHHHHcCCCcCCEEEEEECCEEEEE
Confidence 3456666664 999999887776654433 233343322 23 3445566778999964446765543
No 368
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=24.68 E-value=1e+02 Score=25.34 Aligned_cols=19 Identities=26% Similarity=0.572 Sum_probs=12.9
Q ss_pred EEEEcCCChhHHHHHHHHH
Q 019633 136 QLFEFEACPFCRRVREAIT 154 (338)
Q Consensus 136 ~LY~~~~cP~c~kVr~~L~ 154 (338)
..|...+||.|+...-.|.
T Consensus 22 l~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 22 LYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEECCCCchHHHHHHHHH
Confidence 3345668999998655554
No 369
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=24.56 E-value=19 Score=30.50 Aligned_cols=55 Identities=5% Similarity=0.015 Sum_probs=29.6
Q ss_pred cchhccccCChhhHH----HHHHHHhc-CCceEEEEcCCCCCCchHHHhHcCCCcccEEEc
Q 019633 255 KLELFSYENNPYARI----VREALCEL-ELPYILQNVGDGSSRTKLLVDITGSKEVPYLID 310 (338)
Q Consensus 255 ~l~Ly~~~~sP~~rk----Vr~aL~El-gi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d 310 (338)
.+.++....||.|+. +..++++. +|++.+...+......+.|+. ++...||+++.
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEE
Confidence 466677788998873 33444444 566655544444344567777 88999998863
No 370
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=24.15 E-value=1.5e+02 Score=26.53 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=31.5
Q ss_pred CceEEEEc--CCChhHHHHHHHHHHc-----CCCeEEEEcCCCCCCC-HHHHHHhC--CCCceeEEEeC
Q 019633 133 TRLQLFEF--EACPFCRRVREAITEL-----DLSVEVFPCPKGSIRH-REMVRRLG--GKEQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~~--~~cP~c~kVr~~L~el-----gi~ye~~~v~~~~~~~-~e~l~~~n--P~~qVP~Lvd~ 191 (338)
+.+.|+.| .+||.|..-...|.++ +..++++-+..++... +.|..... ..-.+|+|.|+
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~ 100 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDP 100 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcC
Confidence 35677766 5899998743333322 3445566665544322 23332211 13367999885
No 371
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=24.03 E-value=1.5e+02 Score=24.31 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=29.7
Q ss_pred chhccccCChhhHHHHHHHHh------cCCceEEEEcCCCCCCchHHHhHcCCC-cccEEE
Q 019633 256 LELFSYENNPYARIVREALCE------LELPYILQNVGDGSSRTKLLVDITGSK-EVPYLI 309 (338)
Q Consensus 256 l~Ly~~~~sP~~rkVr~aL~E------lgi~ye~~~v~~g~~k~~~~l~~np~g-~VP~L~ 309 (338)
+..+.-+.|+.|+...-.+.+ ....|..++++.......+.+ +..+ .+|+++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~--~~~g~~vPt~~ 81 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEF--SPDGGYIPRIL 81 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhc--ccCCCccceEE
Confidence 333445789999977665554 334677777765432222222 3333 499775
No 372
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=23.71 E-value=1.3e+02 Score=26.74 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=13.0
Q ss_pred CceEEEEc--CCChhHHHHH
Q 019633 133 TRLQLFEF--EACPFCRRVR 150 (338)
Q Consensus 133 ~~l~LY~~--~~cP~c~kVr 150 (338)
+.+.||.+ .+||.|.+-.
T Consensus 32 k~vvl~F~p~~~cp~C~~el 51 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTEL 51 (187)
T ss_pred CEEEEEEECCCcCCcCHHHH
Confidence 45677776 5899998744
No 373
>PRK09266 hypothetical protein; Provisional
Probab=23.17 E-value=1.2e+02 Score=28.34 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCC-CCceeEEEeCCCCeEEecHHHHHHHHHHhhCCC
Q 019633 147 RRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (338)
Q Consensus 147 ~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP-~~qVP~Lvd~n~g~~l~ES~aI~~YL~~~y~~~ 214 (338)
+.+...+..+|++++...+...+....+++.-.|- .+-+||-.. ++..+.....|.+.|.+.|...
T Consensus 195 ~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i--~~~~~~~~~~~~~~l~~~~~~~ 261 (266)
T PRK09266 195 ALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI--DDVALPDSHALLELLRRAYEAE 261 (266)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEE--CCEECCCCchHHHHHHHHHHhc
Confidence 44455677889999999887654333232223454 689999987 5666654578888888888543
No 374
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.88 E-value=1.3e+02 Score=22.55 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=27.1
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCeEEEEcCC
Q 019633 137 LFEFEACPFCRRVREAITELDLSVEVFPCPK 167 (338)
Q Consensus 137 LY~~~~cP~c~kVr~~L~elgi~ye~~~v~~ 167 (338)
+..|+......++..+|...|+++.++++++
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 5567777889999999999999999999875
No 375
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=22.50 E-value=1.4e+02 Score=22.30 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=38.2
Q ss_pred ccccCChhhHHHHHHHHhc----CCceEEEEcCCCCCCchHHHhHcCCCcccEEEcCCCCee------eccHHHHHHHHh
Q 019633 259 FSYENNPYARIVREALCEL----ELPYILQNVGDGSSRTKLLVDITGSKEVPYLIDPNTSTQ------IGDYKKILSYLF 328 (338)
Q Consensus 259 y~~~~sP~~rkVr~aL~El----gi~ye~~~v~~g~~k~~~~l~~np~g~VP~L~d~~~g~~------l~ES~aI~~YL~ 328 (338)
+..+.|+.|+.....+.++ +-......++.+ +.+++.+..+-..+|.++--++|.. .....+|..+|.
T Consensus 21 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~ 98 (101)
T TIGR01068 21 FWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD--ENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLIN 98 (101)
T ss_pred EECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC--CCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHH
Confidence 3456799999776655432 212333333332 2356667777788997653122211 123477777776
Q ss_pred hh
Q 019633 329 QS 330 (338)
Q Consensus 329 ~~ 330 (338)
+.
T Consensus 99 ~~ 100 (101)
T TIGR01068 99 KN 100 (101)
T ss_pred hh
Confidence 53
No 376
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=22.35 E-value=64 Score=30.75 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=17.7
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc
Q 019633 134 RLQLFEFEACPFCRRVREAITEL 156 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el 156 (338)
.+.+-+.++||+|-.-||+|-..
T Consensus 61 ~v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 61 EVIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred EEEEEecccCccchhhHHHHHHH
Confidence 45566788999999999877543
No 377
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=22.25 E-value=1.6e+02 Score=26.07 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHH
Q 019633 144 PFCRRVREAITELDLSVEVFPCPKGSIRHREMV 176 (338)
Q Consensus 144 P~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l 176 (338)
|.+.++...|+++||+|++..+.. ++.++.+
T Consensus 12 ~~~~~a~~~L~~~gi~~dv~V~Sa--HRtp~~~ 42 (156)
T TIGR01162 12 PTMKKAADILEEFGIPYELRVVSA--HRTPELM 42 (156)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECc--ccCHHHH
Confidence 688999999999999999998863 3444433
No 378
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=22.10 E-value=1.3e+02 Score=29.34 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCeEEE-EcCCCCCC---------CHHHHHHhCCCCceeEEEe
Q 019633 147 RRVREAITELDLSVEVF-PCPKGSIR---------HREMVRRLGGKEQFPFLID 190 (338)
Q Consensus 147 ~kVr~~L~elgi~ye~~-~v~~~~~~---------~~e~l~~~nP~~qVP~Lvd 190 (338)
.++-++..++||.|.++ -|++++.. .-..+++.||..+|=+|+-
T Consensus 103 ~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~P 156 (306)
T COG0320 103 ERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTP 156 (306)
T ss_pred HHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCc
Confidence 68889999999999976 46665421 1234667899999999974
No 379
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=21.86 E-value=1.8e+02 Score=25.19 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=13.2
Q ss_pred CceEEEEc--CCChhHHHHHHHH
Q 019633 133 TRLQLFEF--EACPFCRRVREAI 153 (338)
Q Consensus 133 ~~l~LY~~--~~cP~c~kVr~~L 153 (338)
+.+.|+.+ .+||.|....-.|
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l 52 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAF 52 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHH
Confidence 45566654 5799998644434
No 380
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=1.4e+02 Score=28.87 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=44.2
Q ss_pred hhHHHHHHHHhcCCceEEEEcCCCCCCchHHHhHcCC----CcccEEEcCCCCeeeccHHHHHHH
Q 019633 266 YARIVREALCELELPYILQNVGDGSSRTKLLVDITGS----KEVPYLIDPNTSTQIGDYKKILSY 326 (338)
Q Consensus 266 ~~rkVr~aL~Elgi~ye~~~v~~g~~k~~~~l~~np~----g~VP~L~d~~~g~~l~ES~aI~~Y 326 (338)
-|..||.+|+..++-|+.++|.-+..-++|+..+-+. -..|.+.. .|..|..-..|++.
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV--~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFV--KGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEE--ccEEeccHHHhhhh
Confidence 4778999999999999999997666667777776654 44676655 46777776666654
No 381
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=21.57 E-value=2.6e+02 Score=26.68 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=36.1
Q ss_pred chhccccCChhhH----HHHHHHHhcCCceEEEEcCCCC-CCc------hHHHhHcCCCcccEE--EcCCCC
Q 019633 256 LELFSYENNPYAR----IVREALCELELPYILQNVGDGS-SRT------KLLVDITGSKEVPYL--IDPNTS 314 (338)
Q Consensus 256 l~Ly~~~~sP~~r----kVr~aL~Elgi~ye~~~v~~g~-~k~------~~~l~~np~g~VP~L--~d~~~g 314 (338)
+-++.-..||+|. .++.+-..-|++...+.++... +.- ....+.-+...+|+| ++++++
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC
Confidence 3444456899998 4555667889998888886542 111 222333345679966 566544
No 382
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=21.57 E-value=3.5e+02 Score=28.15 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=28.9
Q ss_pred eEEEEcCCChhHHHHHHHHHHc-------CCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEE
Q 019633 135 LQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (338)
Q Consensus 135 l~LY~~~~cP~c~kVr~~L~el-------gi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lv 189 (338)
+..|.-+||++|+...-.++++ ++.+-.++++.+. . +...+...-..+|.++
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~-~~~~~~~~I~~~PTii 433 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--K-EFAKQELQLGSFPTIL 433 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--c-HHHHHHcCCCccceEE
Confidence 4567788999998766544433 2334445555321 1 2222223455788885
No 383
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=21.27 E-value=1.7e+02 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Q 019633 144 PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRR 178 (338)
Q Consensus 144 P~c~kVr~~L~elgi~ye~~~v~~~~~~~~e~l~~ 178 (338)
+...++-.+|+++|++|+.+.+.. +++++.+.+
T Consensus 16 ~~mk~Aa~~L~~fgi~ye~~VvSA--HRTPe~m~~ 48 (162)
T COG0041 16 DTMKKAAEILEEFGVPYEVRVVSA--HRTPEKMFE 48 (162)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEec--cCCHHHHHH
Confidence 456778899999999999999873 456665543
No 384
>PTZ00056 glutathione peroxidase; Provisional
Probab=20.95 E-value=2.1e+02 Score=25.70 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=36.4
Q ss_pred EEEEcCCChhHHHHHHHHHHc-------CCCeEEEEcCC------CC-CCCHHHHHHhCCCCceeEEEeCCCCeEEecHH
Q 019633 136 QLFEFEACPFCRRVREAITEL-------DLSVEVFPCPK------GS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESG 201 (338)
Q Consensus 136 ~LY~~~~cP~c~kVr~~L~el-------gi~ye~~~v~~------~~-~~~~e~l~~~nP~~qVP~Lvd~n~g~~l~ES~ 201 (338)
.-|...+||+|++-.-.|.++ |+.+--++++. ++ .....++ +.++ -.+|++.|. ++.-.+..
T Consensus 44 v~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~-~~~~-~~fpvl~d~--~v~g~~~~ 119 (199)
T PTZ00056 44 ITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFN-DKNK-IKYNFFEPI--EVNGENTH 119 (199)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHH-HHcC-CCceeeeee--eccCCccC
Confidence 334456899998755444433 44333334321 11 1223444 3333 268888651 11112456
Q ss_pred HHHHHHHHhhC
Q 019633 202 DIVNYLFQQYG 212 (338)
Q Consensus 202 aI~~YL~~~y~ 212 (338)
.+..||.+..+
T Consensus 120 ~l~~~l~~~~~ 130 (199)
T PTZ00056 120 ELFKFLKANCD 130 (199)
T ss_pred HHHHHHHHhCc
Confidence 77778776543
No 385
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=20.56 E-value=2.4e+02 Score=24.13 Aligned_cols=23 Identities=17% Similarity=0.639 Sum_probs=14.3
Q ss_pred ceEEEEcCCChhHHHHHHHHHHc
Q 019633 134 RLQLFEFEACPFCRRVREAITEL 156 (338)
Q Consensus 134 ~l~LY~~~~cP~c~kVr~~L~el 156 (338)
.+..|...+||.|.+....|.++
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~l 50 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNRL 50 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 34445567999998655444433
No 386
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=4.1e+02 Score=27.96 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=47.0
Q ss_pred ceEEEEcCCChhHHH-------HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHhCCCCceeEEEeCCCCe------EEecH
Q 019633 134 RLQLFEFEACPFCRR-------VREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV------SMYES 200 (338)
Q Consensus 134 ~l~LY~~~~cP~c~k-------Vr~~L~elgi~ye~~~v~~~~~~~~e~l~~~nP~~qVP~Lvd~n~g~------~l~ES 200 (338)
-|+.|.-+||..|.+ +--.|.+.+=+..+-.||-.. ..+.- ....-.-+|.|..=-+|. -..+.
T Consensus 45 vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~--~~~~~-~~y~v~gyPTlkiFrnG~~~~~Y~G~r~a 121 (493)
T KOG0190|consen 45 VLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE--ESDLA-SKYEVRGYPTLKIFRNGRSAQDYNGPREA 121 (493)
T ss_pred EEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch--hhhhH-hhhcCCCCCeEEEEecCCcceeccCcccH
Confidence 356677889999864 334555555566665554321 12222 333455677773211332 25678
Q ss_pred HHHHHHHHHhhCCCC
Q 019633 201 GDIVNYLFQQYGKGR 215 (338)
Q Consensus 201 ~aI~~YL~~~y~~~~ 215 (338)
..|+.||.++.|...
T Consensus 122 dgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 122 DGIVKWLKKQSGPAS 136 (493)
T ss_pred HHHHHHHHhccCCCc
Confidence 999999999987653
No 387
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.32 E-value=2.5e+02 Score=22.64 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=26.3
Q ss_pred EEcCCChhHHHHHHHHHHc-----CCCeEEEEcCCC---CCCC----HHHHHHhCCCCceeEEEeC
Q 019633 138 FEFEACPFCRRVREAITEL-----DLSVEVFPCPKG---SIRH----REMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 138 Y~~~~cP~c~kVr~~L~el-----gi~ye~~~v~~~---~~~~----~e~l~~~nP~~qVP~Lvd~ 191 (338)
|...+||.|++-.-.|.++ +..++++-+... .... ++++ +.++ -.+|++.|+
T Consensus 30 F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~-~~~~-~~~p~~~D~ 93 (126)
T cd03012 30 FWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAV-LRYG-ITYPVANDN 93 (126)
T ss_pred EECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHH-HHcC-CCCCEEECC
Confidence 3345899998765444433 234555554321 0111 2333 3332 368888774
No 388
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=20.04 E-value=1.9e+02 Score=23.80 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=30.1
Q ss_pred CceEEEEcC--CChhHHHHHHHHHHcC---CCeEEEEcCCCCCC-CHHHHHHhCCCCceeEEEeC
Q 019633 133 TRLQLFEFE--ACPFCRRVREAITELD---LSVEVFPCPKGSIR-HREMVRRLGGKEQFPFLIDP 191 (338)
Q Consensus 133 ~~l~LY~~~--~cP~c~kVr~~L~elg---i~ye~~~v~~~~~~-~~e~l~~~nP~~qVP~Lvd~ 191 (338)
+.+.|+.++ +||.|++-.-.|.++- -.+.++-+..+... ..++. +..+...+|++.|+
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~-~~~~~~~~~~l~D~ 90 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWC-GAEGVDNVTTLSDF 90 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHH-HhcCCCCceEeecC
Confidence 456666665 4899987655443321 13445544433221 23344 33333468888774
Done!