BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019635
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 122/306 (39%), Positives = 177/306 (57%), Gaps = 31/306 (10%)
Query: 34 AFVCSSTVALMAAFGVEVPKAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAE 93
A +C+ + + G + ++IS +A+ G A+LI+F+P+R TDV+LP+G FV+A+S E
Sbjct: 192 AEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVE 251
Query: 94 SLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSS 153
KA A S++N RV+ECRL A +LA ++ KV L +V+ K G S
Sbjct: 252 MNKA--ATSHFNIRVMECRLAAKLLAKYKSLQ----WDKVLRLEEVQA-------KLGIS 298
Query: 154 --DPVFAVKEFLRKEPYTALDIEKIT----EEKLTSIFANSSSSLDVLNAAKQYKLHQRA 207
+ + ++ L EPY +I + EE T I S ++ DVL +KL+QRA
Sbjct: 299 LEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQIL--SPNTQDVL----IFKLYQRA 352
Query: 208 AHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR 267
HVYSEA RV FK + E+ ++ LG+LMN SH SC +YECSCPEL++LV++CR
Sbjct: 353 KHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICR 410
Query: 268 NNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS 327
GA G+RLTGAGWGGC V++V F+ N+ + +YQ R D + +FA+
Sbjct: 411 KFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQ-RSDGSLAPEKQ---SLFAT 466
Query: 328 KPSSGA 333
KP GA
Sbjct: 467 KPGGGA 472
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 166/326 (50%), Gaps = 55/326 (16%)
Query: 53 KAISIMAKSGFAELIDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNR 107
+A S+ + A ++F P ++ T + P +FV+A++L S K TA +NYN R
Sbjct: 238 QAASVCGEEDHALYVEFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPTNYNLR 297
Query: 108 VVECRLTAIVLAIKLG---MKPQEAISKVK-TLSDVEGLCVAFACKNGSSDP-------- 155
VVE A VLA G + +E S K L D + V +A + S P
Sbjct: 298 VVEVTTAANVLAATYGVVLLSGKEGSSTNKGNLRDF--MNVYYARYHNISTPWNGDIESG 355
Query: 156 -------VFAVKEFL--RKEPYTALDI--------EKITEEKLTSIFANSSSSLDVLNAA 198
+ V+E L +K+ ++ D+ E+ T + LT+ S VL
Sbjct: 356 IERLTKMLVLVEESLANKKQGFSVDDVAQSLNCSREEFTRDYLTT----SPVRFQVL--- 408
Query: 199 KQYKLHQRAAHVYSEAKRV-HAFK-DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSC 256
KL+QRA HVYSE+ RV A K T +S ++ED K+ G LMN+S SC LYECSC
Sbjct: 409 ---KLYQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYECSC 465
Query: 257 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE----QFYQSRIDR 312
PE++++ ++ +NG+ G+RLTGAGWGGC V LV + I +KE +FY+ + +
Sbjct: 466 PEIDKICSIALSNGSYGSRLTGAGWGGCTVHLVPGGPNGN-IEKVKEALANEFYKVKYPK 524
Query: 313 GVINNNDLGLYVFASKPSSGAAKFKF 338
I + +L + SKP+ G+ ++
Sbjct: 525 --ITDAELENAIIVSKPALGSCLYEL 548
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 150/322 (46%), Gaps = 49/322 (15%)
Query: 53 KAISIMAKSGFAELIDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNR 107
+A S+ + A ++F P ++ T + P +FV+A++L +S K TA +NYN R
Sbjct: 195 QATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLR 254
Query: 108 VVECRLTAIVLAIKLGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS------ 152
V+E + A LA + + P + ++ A+ + NG
Sbjct: 255 VIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIE 314
Query: 153 --------SDPVFAVKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQ 200
+ F+ K+ F E TAL+ E+ T + LT+ VL
Sbjct: 315 RLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL----- 365
Query: 201 YKLHQRAAHVYSEAKRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYECSCPE 258
KL+QRA HVYSE+ RV A K S+ ++ED G LMN+S SC LYECSC E
Sbjct: 366 -KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIE 424
Query: 259 LEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRIDRGVI 315
++ ++ NG+ G+RLTGAGWGGC + LV + Q L E+FY R +
Sbjct: 425 TNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPD--L 482
Query: 316 NNNDLGLYVFASKPSSGAAKFK 337
+ +L + SKP+ G ++
Sbjct: 483 TDEELKDAIIVSKPALGTCLYE 504
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 150/322 (46%), Gaps = 49/322 (15%)
Query: 53 KAISIMAKSGFAELIDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNR 107
+A S+ + A ++F P ++ T + P +FV+A++L +S K TA +NYN R
Sbjct: 210 QATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLR 269
Query: 108 VVECRLTAIVLAIKLGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS------ 152
V+E + A LA + + P + ++ A+ + NG
Sbjct: 270 VIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIE 329
Query: 153 --------SDPVFAVKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQ 200
+ F+ K+ F E TAL+ E+ T + LT+ VL
Sbjct: 330 RLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL----- 380
Query: 201 YKLHQRAAHVYSEAKRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYECSCPE 258
KL+QRA HVYSE+ RV A K S+ ++ED G LMN+S SC LYECSC E
Sbjct: 381 -KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIE 439
Query: 259 LEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRIDRGVI 315
++ ++ NG+ G+RLTGAGWGGC + LV + Q L E+FY R +
Sbjct: 440 TNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPD--L 497
Query: 316 NNNDLGLYVFASKPSSGAAKFK 337
+ +L + SKP+ G ++
Sbjct: 498 TDEELKDAIIVSKPALGTCLYE 519
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 182 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 235
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 236 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 292
+LG LMN +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 174 EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEED 232
++I EE L + SS + + K LH++ +++ E RV +D + +E
Sbjct: 204 KRIAEESLRILGKESSKEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDAL-----KEG 258
Query: 233 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 289
++K+G ++ +H + Y SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 DIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAXELGAYGARLTGAGFGGSAIALV 315
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 165 KEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH-AFKDT 223
K T LDI+ + E AN+ D++ L +RA H E R A K
Sbjct: 265 KRMQTRLDIQSLGELSNEEFDANT----DLIGDET---LIKRARHAVYENNRTKIAQKAF 317
Query: 224 VSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GALGARLTGAGWG 282
V+ NL+ K G+L+N SH S YE + EL+ L + G LGAR+TGAG+G
Sbjct: 318 VAGNLT------KFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFG 371
Query: 283 GCVVALV 289
GC +ALV
Sbjct: 372 GCAIALV 378
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 182 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 235
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKXKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 236 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 292
+LG L N +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLXNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 176 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEEDKL 234
I EE L + SS + +K LH++ ++ E RV +D + +E +
Sbjct: 204 IAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDAL-----KEGNV 258
Query: 235 KKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 289
+++G ++ +H + YE SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 EEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALV 313
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 225 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 284
+S++ E K + L D+ N+ H L S ++E+L+ + + NGA+ +LTGAG GG
Sbjct: 217 ASDVIEHHKFEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGS 275
Query: 285 VVALVKE 291
++ L K+
Sbjct: 276 MLLLAKD 282
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 202 KLHQRAAHVYSEAKRVH----AFKDTVSSNLSEEDKLKK---LGDLMNDSHHSCSVLYEC 254
K ++ A + +E ++ FK+ + + E K+K G LM +H L
Sbjct: 197 KRKKKTAELVNEVAKIENKDEIFKE-IDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 254
Query: 255 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 289
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 255 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 288
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 237 LGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 289
G LM +H L S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 241 FGKLMTKNHELLKKL-NISTPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 291
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 228 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 287
+S++D + LG +++ +H + S E + LV ++GALGA+++G G GGC++A
Sbjct: 207 ISQKDA-EGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIA 264
Query: 288 LVKESIDSQ 296
LV +Q
Sbjct: 265 LVTNLTHAQ 273
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 205 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN 264
+RA HV E +R ++ L D + G L +SH S YE SCPEL++LV
Sbjct: 283 RRARHVVGEIRRT----AQAAAALRRGD-YRAFGRLXVESHRSLRDDYEVSCPELDQLVE 337
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 91 LAESLKAITAASNYNNRVVECRLTAIVLAI-KLGMKPQEAIS---------KVKTLSDVE 140
L E++ ++ +++ E +++ LA +L + P+E I+ ++ ++++
Sbjct: 12 LYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQ 71
Query: 141 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 200
L VA G D V VK RK + + + + E S LD+LN+
Sbjct: 72 CLTVA-----GGQDNVMGVKYCFRKNDHVVIAMPYLEHE----------SFLDILNSLSF 116
Query: 201 YKLHQRAAHVYSEAKRVHAF----KDTVSSNLSEEDKLKK 236
++ + +++ KR+H F +D SN +LKK
Sbjct: 117 QEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKK 156
>pdb|4HTE|A Chain A, Crystal Structure Of The C-terminal Domain Of Nicking
Enzyme From Staphylococcus Aureus
Length = 353
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 185 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 240
+ N S S + N AK K++ + Y E +R++ K S +ED+L K+ D+
Sbjct: 19 YXNKSDSTTLKNXAKDLKIYVTPINXYKENERLYDLKQKTSLITDDEDRLNKIEDI 74
>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
Length = 500
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 176 ITEEKLTSIFANSSSSLDVLNAAKQY--KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 233
+ E++ ++F S D ++ AKQ + RA YS ++ +H +D ++S ++ D
Sbjct: 98 LQREEIKTLF-----SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDG 152
Query: 234 LKKLGD 239
D
Sbjct: 153 FPANAD 158
>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
pdb|3F9I|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
Length = 249
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 214 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALG 273
A+ +H V + S E+KLK LG+ + D++ + C+ EE N+ L
Sbjct: 31 ARLLHKLGSKVIISGSNEEKLKSLGNALKDNY----TIEVCNLANKEECSNLISKTSNLD 86
Query: 274 ARLTGAGWGGCVVA--LVKESIDSQFILNLKEQFYQSR 309
+ AG +A + + D +NLK F +R
Sbjct: 87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNR 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,597,949
Number of Sequences: 62578
Number of extensions: 318900
Number of successful extensions: 919
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 28
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)