Query 019635
Match_columns 338
No_of_seqs 184 out of 1720
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 4.4E-61 9.6E-66 483.0 28.2 326 13-338 148-496 (497)
2 COG0153 GalK Galactokinase [Ca 100.0 1.4E-58 2.9E-63 442.1 24.1 260 2-336 100-389 (390)
3 PLN02865 galactokinase 100.0 8.7E-53 1.9E-57 414.9 25.2 272 2-336 114-423 (423)
4 PTZ00290 galactokinase; Provis 100.0 2.3E-52 5E-57 415.8 27.4 268 13-337 133-457 (468)
5 PRK05322 galactokinase; Provis 100.0 7.3E-48 1.6E-52 378.6 27.4 251 13-336 111-387 (387)
6 PRK05101 galactokinase; Provis 100.0 2.7E-47 5.9E-52 374.0 24.4 245 13-335 111-381 (382)
7 TIGR00131 gal_kin galactokinas 100.0 4.8E-47 1E-51 373.1 22.3 251 13-335 109-385 (386)
8 PRK00555 galactokinase; Provis 100.0 5.6E-46 1.2E-50 362.4 27.0 247 12-336 89-362 (363)
9 KOG0631 Galactokinase [Carbohy 100.0 2.3E-45 5E-50 356.6 19.3 319 13-337 141-488 (489)
10 PRK03817 galactokinase; Provis 100.0 3.3E-40 7.2E-45 320.7 28.5 242 13-336 85-350 (351)
11 PLN02677 mevalonate kinase 99.9 3.9E-25 8.5E-30 216.7 23.8 214 12-336 127-382 (387)
12 PTZ00298 mevalonate kinase; Pr 99.9 7.7E-25 1.7E-29 211.2 24.7 196 13-309 93-314 (328)
13 COG1577 ERG12 Mevalonate kinas 99.9 1.5E-24 3.2E-29 205.7 22.4 193 12-309 81-296 (307)
14 TIGR00549 mevalon_kin mevalona 99.9 5.6E-24 1.2E-28 199.5 20.1 173 14-288 78-273 (273)
15 COG0083 ThrB Homoserine kinase 99.9 1.1E-23 2.3E-28 198.3 19.1 203 14-337 77-298 (299)
16 TIGR01220 Pmev_kin_Gr_pos phos 99.9 2.1E-23 4.5E-28 203.5 20.9 195 13-310 99-347 (358)
17 PRK03926 mevalonate kinase; Pr 99.9 7E-23 1.5E-27 195.1 23.5 203 13-337 74-300 (302)
18 COG2605 Predicted kinase relat 99.9 2.9E-23 6.4E-28 191.3 18.4 190 15-304 90-313 (333)
19 PRK13412 fkp bifunctional fuco 99.9 1.4E-22 3.1E-27 215.1 21.7 190 13-303 725-950 (974)
20 PLN02451 homoserine kinase 99.9 5E-22 1.1E-26 194.2 23.6 206 13-337 133-366 (370)
21 KOG1511 Mevalonate kinase MVK/ 99.9 3.6E-20 7.8E-25 174.4 22.4 218 9-337 122-381 (397)
22 PRK01212 homoserine kinase; Pr 99.9 2.1E-20 4.6E-25 178.0 20.3 203 13-336 80-301 (301)
23 PTZ00299 homoserine kinase; Pr 99.9 2E-20 4.4E-25 180.5 17.9 206 13-336 81-322 (336)
24 TIGR00191 thrB homoserine kina 99.8 8.1E-20 1.8E-24 174.3 19.8 200 13-335 79-301 (302)
25 PRK02534 4-diphosphocytidyl-2- 99.8 1.5E-17 3.2E-22 159.5 18.9 208 13-335 85-310 (312)
26 PRK03188 4-diphosphocytidyl-2- 99.8 9.5E-17 2E-21 153.0 21.0 199 13-337 82-296 (300)
27 TIGR00144 beta_RFAP_syn beta-R 99.7 2.4E-16 5.3E-21 151.8 22.0 199 13-336 81-324 (324)
28 PRK00128 ipk 4-diphosphocytidy 99.7 4.3E-17 9.2E-22 154.3 16.5 175 13-304 83-272 (286)
29 PRK14616 4-diphosphocytidyl-2- 99.7 1.6E-15 3.4E-20 143.9 17.4 181 13-307 82-276 (287)
30 TIGR01920 Shik_kin_archae shik 99.7 3.9E-15 8.4E-20 139.4 18.0 76 13-92 63-164 (261)
31 PRK01123 shikimate kinase; Pro 99.7 6.4E-15 1.4E-19 139.4 19.3 74 14-92 75-174 (282)
32 PRK14613 4-diphosphocytidyl-2- 99.6 4.7E-15 1E-19 141.4 15.7 186 13-309 92-291 (297)
33 TIGR00154 ispE 4-diphosphocyti 99.6 2E-14 4.3E-19 136.8 18.3 78 13-93 85-176 (293)
34 PRK14612 4-diphosphocytidyl-2- 99.6 7.6E-15 1.6E-19 138.5 13.5 171 13-305 82-265 (276)
35 PRK14611 4-diphosphocytidyl-2- 99.6 9.4E-14 2E-18 131.0 18.0 161 13-291 79-254 (275)
36 PRK14614 4-diphosphocytidyl-2- 99.6 4.5E-14 9.8E-19 133.5 15.6 78 13-93 84-175 (280)
37 PRK14615 4-diphosphocytidyl-2- 99.6 6.4E-14 1.4E-18 133.5 16.6 80 13-93 87-179 (296)
38 PRK14608 4-diphosphocytidyl-2- 99.6 6.8E-14 1.5E-18 133.0 15.7 78 13-93 89-180 (290)
39 TIGR01219 Pmev_kin_ERG8 phosph 99.5 1.4E-12 3.1E-17 130.1 21.0 75 233-309 353-433 (454)
40 PF08544 GHMP_kinases_C: GHMP 99.5 9.2E-14 2E-18 107.3 7.7 82 220-306 1-84 (85)
41 PRK14609 4-diphosphocytidyl-2- 99.5 5.8E-13 1.3E-17 125.3 14.5 81 13-93 81-173 (269)
42 KOG1537 Homoserine kinase [Ami 99.4 3.4E-12 7.3E-17 116.6 12.0 104 213-335 244-352 (355)
43 PRK00343 ipk 4-diphosphocytidy 99.3 5.5E-11 1.2E-15 112.0 16.1 78 13-93 86-176 (271)
44 TIGR01240 mevDPdecarb diphosph 99.3 9.8E-10 2.1E-14 105.1 21.0 188 14-305 85-304 (305)
45 COG1907 Predicted archaeal sug 99.2 2.6E-09 5.5E-14 99.5 22.7 209 13-336 70-311 (312)
46 COG1685 Archaeal shikimate kin 99.2 2.3E-09 4.9E-14 98.9 18.1 75 14-92 70-170 (278)
47 PRK00650 4-diphosphocytidyl-2- 99.1 8.8E-10 1.9E-14 104.4 14.8 77 14-92 80-169 (288)
48 PRK14610 4-diphosphocytidyl-2- 99.1 4.2E-09 9.2E-14 99.8 15.6 38 13-50 83-120 (283)
49 COG1947 IspE 4-diphosphocytidy 98.8 8.8E-08 1.9E-12 90.3 13.5 81 13-93 84-175 (289)
50 PLN02407 diphosphomevalonate d 98.6 4.1E-06 9E-11 80.8 20.2 93 205-306 227-332 (343)
51 PF00288 GHMP_kinases_N: GHMP 98.6 7.4E-08 1.6E-12 71.4 5.5 38 16-53 1-38 (67)
52 PRK05905 hypothetical protein; 98.5 8.5E-07 1.8E-11 83.0 11.0 79 13-92 85-174 (258)
53 PRK04181 4-diphosphocytidyl-2- 98.4 6.9E-07 1.5E-11 83.6 7.5 79 13-93 85-176 (257)
54 COG3407 MVD1 Mevalonate pyroph 98.3 7.6E-05 1.6E-09 71.7 19.8 76 14-92 90-187 (329)
55 COG4542 PduX Protein involved 98.3 1.8E-05 3.9E-10 72.8 14.4 77 13-92 82-172 (293)
56 KOG4644 L-fucose kinase [Carbo 98.2 7.6E-05 1.6E-09 74.5 17.7 83 215-303 835-920 (948)
57 KOG2833 Mevalonate pyrophospha 98.0 0.00059 1.3E-08 64.7 17.4 92 203-306 224-330 (395)
58 KOG4519 Phosphomevalonate kina 97.0 0.016 3.4E-07 55.6 12.8 48 257-306 383-431 (459)
59 COG3890 ERG8 Phosphomevalonate 96.5 0.18 4E-06 47.4 15.8 29 264-292 279-307 (337)
60 COG1829 Predicted archaeal kin 95.3 0.3 6.6E-06 45.9 11.8 77 15-94 75-173 (283)
61 PF03460 NIR_SIR_ferr: Nitrite 74.6 8.7 0.00019 27.9 5.2 48 254-303 21-68 (69)
62 KOG0051 RNA polymerase I termi 39.1 50 0.0011 34.7 5.0 89 157-251 321-423 (607)
63 COG1356 tfx Transcriptional re 37.5 85 0.0018 26.4 5.2 48 163-226 19-66 (143)
64 COG2221 DsrA Dissimilatory sul 35.7 58 0.0013 31.5 4.5 46 255-302 43-88 (317)
65 TIGR02957 SigX4 RNA polymerase 31.3 1.2E+02 0.0025 28.5 5.9 59 166-245 123-193 (281)
66 PRK09635 sigI RNA polymerase s 31.3 1.1E+02 0.0024 29.0 5.8 57 167-244 134-202 (290)
67 PRK09636 RNA polymerase sigma 25.2 1.8E+02 0.0038 27.3 6.0 24 216-244 176-199 (293)
68 PF09182 PuR_N: Bacterial puri 22.3 3.4E+02 0.0074 20.3 7.2 61 214-282 3-65 (70)
69 TIGR03591 polynuc_phos polyrib 20.7 1.1E+03 0.023 25.5 12.8 146 15-179 419-582 (684)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=4.4e-61 Score=483.02 Aligned_cols=326 Identities=74% Similarity=1.103 Sum_probs=288.8
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeec
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDF 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~ 69 (338)
.||++.|.|+||+|+|||||||++||++.|++.+++.++++ ++|++|++|+++++||
T Consensus 148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~ 227 (497)
T PLN02521 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDF 227 (497)
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEec
Confidence 49999999999999999999999999999999999988665 8999999999999999
Q ss_pred CCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhcc
Q 019635 70 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 149 (338)
Q Consensus 70 ~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~ 149 (338)
+|++++++|+|.++.|+|+||+++++|+.++++.||+||+||+.|+++|++++++...+....+.+|||+...+....+.
T Consensus 228 ~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 307 (497)
T PLN02521 228 NPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGS 307 (497)
T ss_pred CCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999887764322112357899986543333455
Q ss_pred CCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019635 150 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~ 229 (338)
+++.++.+.++..|.+.+|+.++++++++..+++++.++++++++++.++.|.+|+|++||++|+.||.+++++|++++.
T Consensus 308 ~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~ 387 (497)
T PLN02521 308 HGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLS 387 (497)
T ss_pred ccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCc
Confidence 66677888899999999999999999988667778878888999999899999999999999999999999999998643
Q ss_pred ChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhcc
Q 019635 230 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 309 (338)
Q Consensus 230 ~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~~ 309 (338)
.+.++..||++|+++|+++|++|+||||++|.|+++|++.|++|+||||||||||+++|++++..+++++.+.+.|+++.
T Consensus 388 ~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y~~~~ 467 (497)
T PLN02521 388 EEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSR 467 (497)
T ss_pred cchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34459999999999999999999999999999999999999999999999999999999999888999999999999875
Q ss_pred cCCccccCCCCceeEEEeecCCceeeecC
Q 019635 310 IDRGVINNNDLGLYVFASKPSSGAAKFKF 338 (338)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 338 (338)
++++.+.+.++++.+|+++|++||+++.+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~p~~Ga~~~~~ 496 (497)
T PLN02521 468 IEKGVIKEEDLGLYVFASKPSSGAAILKF 496 (497)
T ss_pred cccccccccCCCCcEEEEecCCCceEeec
Confidence 33334455568899999999999999864
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-58 Score=442.12 Aligned_cols=260 Identities=33% Similarity=0.486 Sum_probs=233.1
Q ss_pred CCceeeeee---cccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------e
Q 019635 2 KGETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------A 54 (338)
Q Consensus 2 ~g~~~~l~~---~~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~ 54 (338)
||+++.|.+ .+.||+++|.||||.|+||||||||+||++.|+.++++.++|+ +
T Consensus 100 kgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~ 179 (390)
T COG0153 100 KGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQL 179 (390)
T ss_pred HHHHHHHHhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHH
Confidence 566666666 5679999999999999999999999999999999999998776 9
Q ss_pred eeeeccCCcEEEeecCCCceEEeeCCCC-ceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhccc
Q 019635 55 ISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 133 (338)
Q Consensus 55 as~~g~~g~~l~id~~~~~~~~v~lp~~-~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~ 133 (338)
+++||++||++++||++++++++|+|.. +.|+|+||++ |+.++.++||.|+.||+.|++.|++ + +
T Consensus 180 ~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr~ece~A~~~l~~-~----------~ 245 (390)
T COG0153 180 ASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLGV-S----------I 245 (390)
T ss_pred HHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHHHHHHHHHHHHHH-h----------h
Confidence 9999999999999999999999999975 9999999999 8899999999999999999999998 2 2
Q ss_pred ccccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhh-hhhhhcCCCcchhhhhhhhhhHHHHHHHHHH
Q 019635 134 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKL-TSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 212 (338)
Q Consensus 134 ~~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~ 212 (338)
++|+|++. +++++...... ++ .+++|++|+++
T Consensus 246 ~~L~d~~~-----------------------------~~~~~~~~~i~~~~------------------~~~rRa~hvv~ 278 (390)
T COG0153 246 KSLRDVTD-----------------------------EEFAALQAEIEVDP------------------KIARRARHVVT 278 (390)
T ss_pred hhhhhcCH-----------------------------HHHHhhhhhcccch------------------HHHHHHHHHHh
Confidence 57888753 22222221100 11 38999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHh-CCCcEEEEeCCCCcceEEEEEcC
Q 019635 213 EAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKE 291 (338)
Q Consensus 213 E~~rv~~~~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~-~Ga~GarisGaG~GG~viaL~~~ 291 (338)
|+.|+.+++.||+++ |+..||++|++||.|||++|+|||||+|+|++++.. .|++|+||||||||||+++|+++
T Consensus 279 En~Rvl~a~~Al~~~-----dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~ 353 (390)
T COG0153 279 ENQRVLEAAKALRSG-----DLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPN 353 (390)
T ss_pred HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecCCCCCceEEEEech
Confidence 999999999999998 899999999999999999999999999999999986 58899999999999999999999
Q ss_pred CchHHHHHHHHHHHHhcccCCccccCCCCceeEEEeecCCceeee
Q 019635 292 SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 336 (338)
Q Consensus 292 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 336 (338)
+.++++++.+.++|++..+ +++.+|+++|++|++++
T Consensus 354 ~~v~~~~e~v~~~y~~~~g---------~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 354 DDVEAVAEAVAEEYEKVTG---------LKAAFYVVEASQGAGVC 389 (390)
T ss_pred hhHHHHHHHHHHhHHhhcC---------ccccEEEEeccCCcccc
Confidence 9999999999999999986 78899999999999975
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=8.7e-53 Score=414.92 Aligned_cols=272 Identities=25% Similarity=0.307 Sum_probs=227.0
Q ss_pred CCceeeeeec---c-cceEEEEEecC-CCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------
Q 019635 2 KGETVVIITK---F-QLFNHINSLFF-NLGSGLSSSTAFVCSSTVALMAAFGVEVPK----------------------- 53 (338)
Q Consensus 2 ~g~~~~l~~~---~-~gf~~~i~s~v-P~gsGLsSSAAl~va~~~Al~~~~~~~ls~----------------------- 53 (338)
||++..|.+. . +||++.|.|+| |+|+|||||||++||++.|++.+++.++++
T Consensus 114 ~gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mD 193 (423)
T PLN02865 114 RGAVYALQSRGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILD 193 (423)
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcccc
Confidence 4555555542 2 69999999999 579999999999999999999999987544
Q ss_pred -eeeeeccCCcEEEeecCCCceEEeeCC-------CCceEEEEecCCccchhccc-chhhhHHHHHHHHHHHHHHHHhCC
Q 019635 54 -AISIMAKSGFAELIDFNPIRTTDVQLP-------AGGTFVVAHSLAESLKAITA-ASNYNNRVVECRLTAIVLAIKLGM 124 (338)
Q Consensus 54 -~as~~g~~g~~l~id~~~~~~~~v~lp-------~~~~~vv~~s~v~~~k~~~~-~~~yn~R~~ec~~A~~iL~~~~~~ 124 (338)
++|++|++|++++|||+|+.++++|+| .++.|+++||++ +|..+ ++.||.||.||+.|+++|++++|+
T Consensus 194 Q~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~---~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~ 270 (423)
T PLN02865 194 QSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGL---RHALTNKPGYNLRVSECQEAARFLLEASGN 270 (423)
T ss_pred HHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCC---chhhcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999988888887 368999999999 56655 799999999999999999987764
Q ss_pred CchhhhcccccccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHH
Q 019635 125 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 204 (338)
Q Consensus 125 ~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (338)
... ..+|||+.. +++.+.... +++ .++
T Consensus 271 ~~~-----~~~Lr~~~~-----------------------------~~~~~~~~~-l~~------------------~l~ 297 (423)
T PLN02865 271 DEL-----EPLLCNVEP-----------------------------EVYEAHKCK-LEA------------------VLA 297 (423)
T ss_pred ccc-----hhhhhcCCH-----------------------------HHHHHHHhh-cCH------------------HHH
Confidence 211 246776642 222222111 111 278
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHh-CCCcEEEEeCCCCcc
Q 019635 205 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGG 283 (338)
Q Consensus 205 ~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~-~Ga~GarisGaG~GG 283 (338)
+|++|+++|+.||.+++++|+++ |++.||++|+++|.|+|++|+|||||+|.|++.+++ .|++|+|||||||||
T Consensus 298 ~Ra~Hv~~E~~Rv~~~~~al~~~-----d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~Ga~GaR~tGgGfGG 372 (423)
T PLN02865 298 RRAEHYFSENMRVIKGVEAWASG-----NLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRG 372 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 99999999999999999999998 899999999999999999999999999999999998 599999999999999
Q ss_pred eEEEEEcCCchHHHHHHHHHHHHhcccCCccccCCCCceeEEEeecCCceeee
Q 019635 284 CVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 336 (338)
Q Consensus 284 ~viaL~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 336 (338)
|+++|++.+..+++++.+.+.|++++. ++.+..+.++.+|+++|++||+++
T Consensus 373 c~vaLv~~~~~~~~~~~v~~~Y~~~~p--~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 373 CCVAFVDAEMAEEAASFVRDEYEKAQP--ELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred EEEEEEchhHHHHHHHHHHHHHHhhcc--ccccccCCCCcEEEEecCCCcccC
Confidence 999999999999999999999997642 111112367899999999999874
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=2.3e-52 Score=415.76 Aligned_cols=268 Identities=20% Similarity=0.269 Sum_probs=216.9
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCC-----------------C-------------------------
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----------------E------------------------- 50 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~-----------------~------------------------- 50 (338)
.||++.|.||||+|+||||||||+||++.|++.++++ .
T Consensus 133 ~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~c 212 (468)
T PTZ00290 133 QGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNV 212 (468)
T ss_pred CCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCc
Confidence 5999999999999999999999999999999998632 0
Q ss_pred --CcceeeeeccCCcEEEeecCCCceEEeeCC----CCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCC
Q 019635 51 --VPKAISIMAKSGFAELIDFNPIRTTDVQLP----AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 124 (338)
Q Consensus 51 --ls~~as~~g~~g~~l~id~~~~~~~~v~lp----~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~ 124 (338)
||+++|++|++|++++|||++++++++|+| .+++|+|+||+++|++..+++..||+||.||+.|+++|+++. +
T Consensus 213 GiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~-l 291 (468)
T PTZ00290 213 GIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHR-Y 291 (468)
T ss_pred chhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhcccc-c
Confidence 344999999999999999999999999985 479999999999665554455699999999999999997631 0
Q ss_pred Cchhhhcccc-cccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHH----HH-HHhchhhhhhhhcCCCcchhhhhh
Q 019635 125 KPQEAISKVK-TLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALD----IE-KITEEKLTSIFANSSSSLDVLNAA 198 (338)
Q Consensus 125 ~~~~~~~~~~-~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e----~~-~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
+.+. +|||+. ..+.+||.+| +. ..... ++
T Consensus 292 ------~~~~~~Lrd~~----------------------~~~~~~~~~~~~~~~~~~~~~~-l~---------------- 326 (468)
T PTZ00290 292 ------RGKPFTFSDLV----------------------RNPKKYTFDGDVVAFMESCKPL-MT---------------- 326 (468)
T ss_pred ------cchhhhHHHhh----------------------hccccccccccHHHHHHHhhhc-CC----------------
Confidence 0011 344331 0122344432 11 11110 11
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHH-hCCCcEEE
Q 019635 199 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGAR 275 (338)
Q Consensus 199 ~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~--~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~-~~Ga~Gar 275 (338)
..+++|++||++|+.||.+++.+|+... ...+|+..||++|+++|.+||++|+||||++|.|++++. +.|++|+|
T Consensus 327 --~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaR 404 (468)
T PTZ00290 327 --PGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGR 404 (468)
T ss_pred --HHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEE
Confidence 1389999999999999999999996210 011379999999999999999999999999999999765 57999999
Q ss_pred EeCCCCcceEEEEEcCCchHHHHHHHHHHHHhcccCCccccCCCCceeEEEeecCCceeeec
Q 019635 276 LTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 337 (338)
Q Consensus 276 isGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 337 (338)
|||||||||+++|++++..+++++++.+.|.++++ .++.+|.++|++||+++.
T Consensus 405 lTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~~g---------~~~~~~~~~~~~Ga~~~~ 457 (468)
T PTZ00290 405 MMGGGFGGCIILLLKKNAVDRVVAHVREKFKARFG---------VENDVYPVVAGDGAFVVS 457 (468)
T ss_pred EecCCCceEEEEEechhhHHHHHHHHHHHHHHhhC---------CCCcEEEEecCCCcEEEe
Confidence 99999999999999999999999999999988875 678999999999999875
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=7.3e-48 Score=378.59 Aligned_cols=251 Identities=28% Similarity=0.382 Sum_probs=222.2
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELID 68 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~id 68 (338)
.||++.|.|+||+|+|||||||++||++.|++.+++.++++ +++++|++|+++++|
T Consensus 111 ~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d 190 (387)
T PRK05322 111 HGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLD 190 (387)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEe
Confidence 69999999999999999999999999999999999998665 889999999999999
Q ss_pred cCCCceEEeeCC-CCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhh
Q 019635 69 FNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 147 (338)
Q Consensus 69 ~~~~~~~~v~lp-~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~ 147 (338)
|++++++++|+| .++.|+|+||++ ||.++++.||.||.||+.|++.|++++++ .+|+|+..
T Consensus 191 ~~~~~~~~~~~~~~~~~lvv~dsg~---~~~~~~~~yn~r~~e~~~a~~~l~~~~~~---------~~l~~~~~------ 252 (387)
T PRK05322 191 CNTLEYEYVPLDLGDYVIVIMNTNK---RRELADSKYNERRAECEKALEELQKKLDI---------KSLGELTE------ 252 (387)
T ss_pred cCCCceEEeccCCCCeEEEEEECCC---ccccCcchhhHHHHHHHHHHHHHhhhcCc---------cchhcCCH------
Confidence 999999999997 468999999998 78889999999999999999999987642 46776542
Q ss_pred ccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019635 148 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~ 227 (338)
++++.+.....++ .+++|++|++.|+.|+..++.+|+++
T Consensus 253 -----------------------~~~~~~~~~~~~~------------------~~~~r~~h~v~e~~r~~~~~~al~~~ 291 (387)
T PRK05322 253 -----------------------EEFDEYSYLIKDE------------------TLLKRARHAVTENQRTLKAVKALKAG 291 (387)
T ss_pred -----------------------HHHHHHHhhcCCH------------------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1122211100011 38999999999999999999999998
Q ss_pred CCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHH-hCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHH
Q 019635 228 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 228 ~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~-~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
|++.||++|+++|.+|++.|++|+|++|.|++.++ +.|++|+||||||||||+++|++.+..+++.+.|.+.|+
T Consensus 292 -----d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~ 366 (387)
T PRK05322 292 -----DLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYE 366 (387)
T ss_pred -----CHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999997 579999999999999999999998889999999999999
Q ss_pred hcccCCccccCCCCceeEEEeecCCceeee
Q 019635 307 QSRIDRGVINNNDLGLYVFASKPSSGAAKF 336 (338)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 336 (338)
++++ .++.+|+++|++|||++
T Consensus 367 ~~~~---------~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 367 EKIG---------YAASFYVAEIGDGAREL 387 (387)
T ss_pred HhcC---------CCCcEEEEecCCCcccC
Confidence 8876 67899999999999874
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=2.7e-47 Score=374.05 Aligned_cols=245 Identities=29% Similarity=0.436 Sum_probs=216.2
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELID 68 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~id 68 (338)
.||++.|.|+||+|+|||||||++||++.|++.+++.++++ +++++|++|+++++|
T Consensus 111 ~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d 190 (382)
T PRK05101 111 GGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLID 190 (382)
T ss_pred CCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEE
Confidence 58999999999999999999999999999999999998765 778999999999999
Q ss_pred cCCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhc
Q 019635 69 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 148 (338)
Q Consensus 69 ~~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~ 148 (338)
+++++++++|+|.++.|+|+||++ ++.+..+.||.|+.||+.|+++++. ++|+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~vv~~sg~---~~~l~~~~y~~r~~e~~~A~~~l~~-------------~~l~~~~~------- 247 (382)
T PRK05101 191 CRSLETKAVPMPEGVAVVIINSNV---KRGLVDSEYNTRRQQCETAARFFGV-------------KALRDVTL------- 247 (382)
T ss_pred cCCCceEEeeCCCCcEEEEEeCCC---CccccccchhHHHHHHHHHHHHhCh-------------HhhhcCCH-------
Confidence 999999999999999999999999 5566779999999999999998865 34565421
Q ss_pred cCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019635 149 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~ 228 (338)
+++...... +.+ .+++|+.|+++|+.|+.+++.+|+++
T Consensus 248 ----------------------~~~~~~~~~-l~~------------------~~~~r~~h~i~E~~rv~~a~~al~~~- 285 (382)
T PRK05101 248 ----------------------EQFNAVAAE-LDP------------------VVAKRARHVITENARTLEAASALAAG- 285 (382)
T ss_pred ----------------------HHHHHHHhh-CCH------------------HHHHHHHHHhHHHHHHHHHHHHHHcC-
Confidence 111111110 111 37899999999999999999999998
Q ss_pred CChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhC-CC-cEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHH
Q 019635 229 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GA-LGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 229 ~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~-Ga-~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
|++.||++|+++|.+||+.|++|||++|.|+++|++. |+ +|+||||||||||+++|++++..+++++.+.+.|+
T Consensus 286 ----d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~ 361 (382)
T PRK05101 286 ----DLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYE 361 (382)
T ss_pred ----CHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHH
Confidence 8999999999999999988999999999999999996 98 48899999999999999999999999999999999
Q ss_pred hcccCCccccCCCCceeEEEeecCCceee
Q 019635 307 QSRIDRGVINNNDLGLYVFASKPSSGAAK 335 (338)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 335 (338)
++++ .++.+|.++|++||++
T Consensus 362 ~~~~---------~~~~~~~~~~~~Ga~~ 381 (382)
T PRK05101 362 AKTG---------LKETFYVCKASQGAGQ 381 (382)
T ss_pred HhhC---------CCCeEEEEecCCCccc
Confidence 8875 6789999999999986
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=4.8e-47 Score=373.06 Aligned_cols=251 Identities=33% Similarity=0.460 Sum_probs=215.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELID 68 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~id 68 (338)
.||++.|.|+||+|+|||||||++||++.|++.+++.++++ +++++|+.|+++++|
T Consensus 109 ~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~ 188 (386)
T TIGR00131 109 LGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVE 188 (386)
T ss_pred CceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEE
Confidence 48999999999999999999999999999999999987654 889999999999999
Q ss_pred cCCCceEEeeCCC-CceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhh
Q 019635 69 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 147 (338)
Q Consensus 69 ~~~~~~~~v~lp~-~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~ 147 (338)
|+++++.++++|. ++.|+|+||++ ++.+.++.||.|++||+.|+++|+.+. ..+||++...
T Consensus 189 ~~~~~~~~~~~~~~~~~lvv~~s~~---~~~t~~~~y~~r~~e~~~a~~~l~~~~----------~~~lr~~~~~----- 250 (386)
T TIGR00131 189 CRSLKATPFKFPQLGIAFVIANTNV---KRTLAPSNYNTRRQECTTAANFLAATD----------KGALRDFMNE----- 250 (386)
T ss_pred cCCCceeeecCCCCCeEEEEEeCCC---ccccccchhHHHHHHHHHHHHHhcccc----------ccchhhCCHH-----
Confidence 9999999999997 89999999999 667888999999999999999997641 1356655321
Q ss_pred ccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019635 148 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~ 227 (338)
.+. .+.+.++. +.+ ..++|++|+++|+.||.+++++|+++
T Consensus 251 ----------~~~-----------~~~~~~~~-~~~------------------~~~~r~~h~v~e~~rv~~~~~al~~~ 290 (386)
T TIGR00131 251 ----------YFA-----------RYIARLTK-MLP------------------LVEERAKHVVSENLRVLKAVKAMKDN 290 (386)
T ss_pred ----------HHh-----------hhHhhHhh-cCH------------------HHHhhHheeehHHHHHHHHHHHHHhC
Confidence 000 00011111 111 26789999999999999999999998
Q ss_pred CCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHH-HhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHH
Q 019635 228 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 228 ~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a-~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
|++.||++|+++|.+++++|++|+|++|.+++.+ +++||+|+||||||||||+++|++++.++++.++|.+.|+
T Consensus 291 -----d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~ 365 (386)
T TIGR00131 291 -----DFKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYP 365 (386)
T ss_pred -----cHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999875 6689999999999999999999999889999999999997
Q ss_pred hcccCCccccCCCCceeEEEeecCCceee
Q 019635 307 QSRIDRGVINNNDLGLYVFASKPSSGAAK 335 (338)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 335 (338)
+.++ .++.+|+++++.|++.
T Consensus 366 ~~~~---------~~~~~~~~~~~~Ga~~ 385 (386)
T TIGR00131 366 KKTG---------LELTFYVIVSKPGAGS 385 (386)
T ss_pred HhhC---------CCCcEEEEEECCCcCC
Confidence 7664 6788999999999875
No 8
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=5.6e-46 Score=362.42 Aligned_cols=247 Identities=26% Similarity=0.357 Sum_probs=216.6
Q ss_pred ccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEe
Q 019635 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELI 67 (338)
Q Consensus 12 ~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~i 67 (338)
+.||++.|.|+||+|+|||||||++||++.|++.+++.++++ ++|++|+.|+++++
T Consensus 89 ~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~ 168 (363)
T PRK00555 89 VPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLI 168 (363)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEE
Confidence 359999999999999999999999999999999999987655 88999999999999
Q ss_pred ecCCCceEEeeCCC---CceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhh
Q 019635 68 DFNPIRTTDVQLPA---GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 144 (338)
Q Consensus 68 d~~~~~~~~v~lp~---~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~ 144 (338)
||+++.++++|+|. ++.|+++||++ ++.++++.||.|+.||+.+++.++. .+++++..
T Consensus 169 d~~~~~~~~v~~~~~~~~~~lvv~~s~~---~~~~~~~~y~~rr~~~~~~~~~~~~-------------~~lr~~~~--- 229 (363)
T PRK00555 169 DFRDLTVRPVAFDPDAAGVVLLLMDSRA---RHRHAGGEYAARRASCERAAADLGV-------------SSLRAVQD--- 229 (363)
T ss_pred EcCCCcEEEeccCCCcCceEEEEEcCCC---cccccchhhHHHHHHHHHHHHHhCc-------------cchhcCCH---
Confidence 99999999999975 36799999999 6788889999999999999987753 35665432
Q ss_pred hhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019635 145 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 224 (338)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL 224 (338)
++++.+... .++ ..++|++|+++|+.|+..++++|
T Consensus 230 --------------------------~~~~~~~~~-~~~------------------~~~~r~~h~~~e~~~v~~~~~al 264 (363)
T PRK00555 230 --------------------------RGLAALGAI-ADP------------------IDARRARHVLTENQRVLDFAAAL 264 (363)
T ss_pred --------------------------HHHHHHHhc-CCh------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 111 37899999999999999999999
Q ss_pred hcCCCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHH
Q 019635 225 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 304 (338)
Q Consensus 225 ~~~~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~ 304 (338)
+++ |++.||++|+++|+++|+.|++|+|++|.|++.+++.|++|+||||||||||+++|++.+..+++.+.+++.
T Consensus 265 ~~g-----d~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~ 339 (363)
T PRK00555 265 ADS-----DFTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPADRAEDVADTVRRA 339 (363)
T ss_pred HcC-----CHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHH
Confidence 998 899999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHhcccCCccccCCCCceeEEEeecCCceeee
Q 019635 305 FYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 336 (338)
Q Consensus 305 y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 336 (338)
|+++++ .++.+|.++|++||+++
T Consensus 340 y~~~~~---------~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 340 AVTAGY---------PEPAVSRTYAAPGAGEC 362 (363)
T ss_pred HHHccC---------CCCcEEEEecCCCcccC
Confidence 999876 67899999999999975
No 9
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-45 Score=356.64 Aligned_cols=319 Identities=36% Similarity=0.526 Sum_probs=266.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHh-CCC-------------------------CcceeeeeccCCcEEE
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF-GVE-------------------------VPKAISIMAKSGFAEL 66 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~-~~~-------------------------ls~~as~~g~~g~~l~ 66 (338)
.|+.+.+.|++|+|+|||||||++++++.|.+.++ |.+ ||++++++|++|++++
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~ 220 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLAEKGHALL 220 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHHHHHHHhcCceEE
Confidence 48999999999999999999999999999999998 665 2238999999999999
Q ss_pred ee--cCCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhh
Q 019635 67 ID--FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 144 (338)
Q Consensus 67 id--~~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~ 144 (338)
|| |.|++...+++|.+-.|+|.|+++.+||..++.+.||.|+.||+.|..+|++++++..++........++..+ +
T Consensus 221 v~~~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~~~~--~ 298 (489)
T KOG0631|consen 221 VDPYFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRAWRG--D 298 (489)
T ss_pred ecccCCccccccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhcccc--c
Confidence 99 7799999999999989999999999999999999999999999999999999998875422111112221000 1
Q ss_pred hhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019635 145 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 224 (338)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL 224 (338)
...+....++|...+++.|++++|+.+|+...++.+.+++....+...++ ....+++|+|++|+++|+.|+.++..++
T Consensus 299 i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v--~~~~~k~~~rakHv~sea~rv~q~~~~~ 376 (489)
T KOG0631|consen 299 IGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAV--DLQVKKLYQRAKHVYSEALRVLQEEKLC 376 (489)
T ss_pred cchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122333466667888999999999999999998887776544433333 2356689999999999999999999999
Q ss_pred hcCCC-ChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHH
Q 019635 225 SSNLS-EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 303 (338)
Q Consensus 225 ~~~~~-~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~ 303 (338)
.+... .++.+..||+|||+||.|++.+|++||||+|+|+++++++|.+|+|+||||||||++++++.+..+.+.+.+.+
T Consensus 377 ~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~~~ 456 (489)
T KOG0631|consen 377 ARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGAGWGGCTVALVPADLVDFAVAALKE 456 (489)
T ss_pred hcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeeccccccceeeeccccchHHHHHhhhh
Confidence 88632 22447889999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHhcccCCccccCCCCceeEEEeecCCceeeec
Q 019635 304 QFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 337 (338)
Q Consensus 304 ~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 337 (338)
.||++.. +.+..+..+..++.++|+.|+.++.
T Consensus 457 ~~Y~ka~--~~~~~~~~k~~~~~skp~~g~~l~e 488 (489)
T KOG0631|consen 457 IYYEKAY--PKFAQDELKKALIVSKPAAGVLLLE 488 (489)
T ss_pred hhhcccc--chhhhchhhceEEEecCchhhhhcc
Confidence 9998865 5677776788889999999988764
No 10
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=3.3e-40 Score=320.71 Aligned_cols=242 Identities=30% Similarity=0.400 Sum_probs=212.4
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELID 68 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~id 68 (338)
.||++.|.++||+|+|||||||++||++.|++.+++.++++ +++++|+.++++++|
T Consensus 85 ~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~ 164 (351)
T PRK03817 85 GGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLD 164 (351)
T ss_pred CCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEEe
Confidence 58999999999999999999999999999999999987665 777888889999999
Q ss_pred cCCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhc
Q 019635 69 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 148 (338)
Q Consensus 69 ~~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~ 148 (338)
+.++.+.++++|.+++|++++|++ ++.+....||+|+.+|+.+++.|+.. +++++..
T Consensus 165 ~~~~~~~~~~~~~~~~~vv~~sg~---~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~------- 221 (351)
T PRK03817 165 TMTLEYEYVPFPEDYEILVFDTGV---KRELASSEYNERRQECEEALKILGKK-------------SSKEVTE------- 221 (351)
T ss_pred cCCCceEEEecCCCcEEEEEeCCC---ccccccchhHHHHHHHHHHHHHhCcc-------------chhcCCH-------
Confidence 999989999999999999999998 45666679999999999999988652 3443321
Q ss_pred cCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019635 149 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~ 228 (338)
+++.. +.+ .+++|+.|++.|+.|+..++.+|+++
T Consensus 222 ----------------------~~~~~-----l~~------------------~~~~~~~~~v~e~~r~~~~~~al~~~- 255 (351)
T PRK03817 222 ----------------------EDLSK-----LPP------------------LLRKRAGYVLRENERVLKVRDALKEG- 255 (351)
T ss_pred ----------------------HHHHh-----CCH------------------HHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 11000 111 27889999999999999999999998
Q ss_pred CChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhc
Q 019635 229 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQS 308 (338)
Q Consensus 229 ~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~ 308 (338)
|++.||++|+++|.++++.|++|+|++|+|++.+++.|++|+||||||||||+++|++++..+++++.+++.|.+.
T Consensus 256 ----d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~~~~~~ 331 (351)
T PRK03817 256 ----DIETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYKKR 331 (351)
T ss_pred ----CHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999998888899999999999776
Q ss_pred ccCCccccCCCCceeEEEeecCCceeee
Q 019635 309 RIDRGVINNNDLGLYVFASKPSSGAAKF 336 (338)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 336 (338)
.+ ..+.+|++.+++|++++
T Consensus 332 ~~---------~~~~~~~~~~~~G~~~~ 350 (351)
T PRK03817 332 FG---------IDPKYFVVESSDGVRKI 350 (351)
T ss_pred cC---------CCCcEEEEecCCCceeC
Confidence 54 56789999999999986
No 11
>PLN02677 mevalonate kinase
Probab=99.94 E-value=3.9e-25 Score=216.66 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=153.6
Q ss_pred ccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCC-CC------------------------------------cce
Q 019635 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-EV------------------------------------PKA 54 (338)
Q Consensus 12 ~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~-~l------------------------------------s~~ 54 (338)
..++++.|.|+||+|+|||||||++||++.|++.+++. ++ |.+
T Consensus 127 ~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a 206 (387)
T PLN02677 127 FNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNT 206 (387)
T ss_pred CCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHH
Confidence 45789999999999999999999999999999999982 21 127
Q ss_pred eeeeccCCcEEEeecCCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccc
Q 019635 55 ISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVK 134 (338)
Q Consensus 55 as~~g~~g~~l~id~~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~ 134 (338)
++.+|. .|.|+...+++++.|.++.|+|+||++++ .|. .+...+.+...
T Consensus 207 ~s~~Gg-----~I~f~~~~~~~l~~~~~l~llv~dTgv~~---sT~------------~lV~~V~~~~~----------- 255 (387)
T PLN02677 207 VSTYGN-----MIKFKSGELTRLQSNMPLKMLITNTRVGR---NTK------------ALVAGVSERAL----------- 255 (387)
T ss_pred HHhcCC-----eEEEcCCCceecCCCCCceEEEEECCCCC---cHH------------HHHHHHHHHHH-----------
Confidence 788874 67777777788888888999999999953 441 22222222110
Q ss_pred cccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHH
Q 019635 135 TLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA 214 (338)
Q Consensus 135 ~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~ 214 (338)
... +. .++ +.+++.
T Consensus 256 ~~p-------------------~~----------------------~~~-------------------il~~~~------ 269 (387)
T PLN02677 256 RHP-------------------DA----------------------MKS-------------------VFNAVD------ 269 (387)
T ss_pred hCH-------------------HH----------------------HHH-------------------HHHHHH------
Confidence 000 00 000 122222
Q ss_pred HHHHHHHHHHhc--CCC--ChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEc
Q 019635 215 KRVHAFKDTVSS--NLS--EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVK 290 (338)
Q Consensus 215 ~rv~~~~~aL~~--~~~--~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~ 290 (338)
.-+.++.++|++ ++. .++|++.|+++|+.+|..|+.+ ++|+|.+|.+++++++.| +|+|+||||+|||+|+|.+
T Consensus 270 ~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~L-GVS~~~le~iv~~a~~~~-~~AKlTGAGgGGC~IaL~~ 347 (387)
T PLN02677 270 SISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCM-GVSHSSIETVLRTTLKYK-LVSKLTGAGGGGCVLTLLP 347 (387)
T ss_pred HHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHcC-CccccccCCCCCEEEEEcc
Confidence 223445556665 110 1137999999999999999976 899999999999999985 7999999999999999997
Q ss_pred CCchHHHHHHHHHHHHhcccCCccccCCCCceeEEEeecC-Cceeee
Q 019635 291 ESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPS-SGAAKF 336 (338)
Q Consensus 291 ~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~ 336 (338)
++..++..+.+.+.+.+.++ ..|.++++ .|+++.
T Consensus 348 ~~~~~~~~~~l~~~l~~~G~------------~~~~~~~g~~Gv~~~ 382 (387)
T PLN02677 348 TLLSGTVVDKVIAELESSGF------------QCFTAGIGGNGVQIC 382 (387)
T ss_pred cccchhHHHHHHHHHHHCCC------------eEEEEEeCCCceEEE
Confidence 65455566667777777763 56788886 588764
No 12
>PTZ00298 mevalonate kinase; Provisional
Probab=99.94 E-value=7.7e-25 Score=211.20 Aligned_cols=196 Identities=21% Similarity=0.271 Sum_probs=147.9
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeec
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDF 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~ 69 (338)
.|+++.|.++||+++|||||||+++|++.|++.+++.++++ .++++| .++.+..
T Consensus 93 ~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG~D~~~~~~G---g~~~~~~ 169 (328)
T PTZ00298 93 DGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSGADNTAATYG---GLISYRR 169 (328)
T ss_pred CCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHcC---CeEEEec
Confidence 38999999999999999999999999999999999998765 445665 3555543
Q ss_pred CC--CceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhh
Q 019635 70 NP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 147 (338)
Q Consensus 70 ~~--~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~ 147 (338)
.. ..++++++|.++.+++++|+++ ..|. ..|. .+.+ +++..
T Consensus 170 ~~g~~~~~~l~~~~~~~lvv~~~~~~---~sT~-~~~~-----------~v~~---------------~~~~~------- 212 (328)
T PTZ00298 170 VNGKSVFKRIAFQQPLYLVVCSTGIT---ASTT-KVVG-----------DVRK---------------LKENQ------- 212 (328)
T ss_pred CCCccceeEecCCCCCeEEEEECCCc---hhHH-HHHH-----------HHHH---------------HHhcC-------
Confidence 33 2467888888889999999984 3331 1121 1111 00000
Q ss_pred ccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019635 148 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~ 227 (338)
.+. .+ .+.+|+.| ++.+++.+|.++
T Consensus 213 ----------------------p~~--------~~-------------------~~~~~~~~------~~~~~~~al~~~ 237 (328)
T PTZ00298 213 ----------------------PTW--------FN-------------------RLLENYNA------CVSEAKEALQKG 237 (328)
T ss_pred ----------------------HHH--------HH-------------------HHHHHHHH------HHHHHHHHHHcC
Confidence 000 00 13344444 355677788887
Q ss_pred CCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC-CchHHHHHHHHHHHH
Q 019635 228 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFY 306 (338)
Q Consensus 228 ~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~-~~~~~~~~~l~~~y~ 306 (338)
|++.++++|+++|+.+++ +++++|+++++++.+++.|++|+||||||+|||+++|+++ +.++++.+.+++.|.
T Consensus 238 -----d~~~lg~~m~~~~~~l~~-~~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~ 311 (328)
T PTZ00298 238 -----NLFRVGELMNANHDLCQK-LTVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCP 311 (328)
T ss_pred -----CHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhh
Confidence 899999999999999985 4789999999999999999999999999999999999976 577889999998887
Q ss_pred hcc
Q 019635 307 QSR 309 (338)
Q Consensus 307 ~~~ 309 (338)
+.+
T Consensus 312 ~~~ 314 (328)
T PTZ00298 312 EAK 314 (328)
T ss_pred hcC
Confidence 665
No 13
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.93 E-value=1.5e-24 Score=205.71 Aligned_cols=193 Identities=27% Similarity=0.365 Sum_probs=139.2
Q ss_pred ccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEee
Q 019635 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELID 68 (338)
Q Consensus 12 ~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id 68 (338)
..+|++.|.|+||+|+||+||||+.||++.|++..+|.++++ +++.+| +++.+.
T Consensus 81 ~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg~D~a~~~~g---g~v~~~ 157 (307)
T COG1577 81 LKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITYG---GLVAFK 157 (307)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCcccceEEEeC---CEEEEe
Confidence 458999999999999999999999999999999999998876 677776 355544
Q ss_pred cCCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhc
Q 019635 69 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 148 (338)
Q Consensus 69 ~~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~ 148 (338)
-. ..++++.+|..-.|+|.|++++. .| +++.+...+. ++
T Consensus 158 ~~-~~~~~l~~~~~~~~~I~~tg~~~---sT------------~e~V~~V~~l---------------~~---------- 196 (307)
T COG1577 158 KG-FDFEKLEIELLGTLVIGDTGVPG---ST------------KELVAGVAKL---------------LE---------- 196 (307)
T ss_pred cC-CCccccccccCCeEEEEEcCCcC---cH------------HHHHHHHHHH---------------HH----------
Confidence 32 34555555543389999999853 33 1222222110 00
Q ss_pred cCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019635 149 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~ 228 (338)
+.. +..++ .++ .+ ..-+.++..+++++
T Consensus 197 -----------------------~~~----~~~~~-------------------~~~----~i--g~~~~~a~~al~~~- 223 (307)
T COG1577 197 -----------------------EEP----EVIDP-------------------ILD----AI--GELVQEAEAALQTG- 223 (307)
T ss_pred -----------------------hhh----HHHHH-------------------HHH----HH--HHHHHHHHHHHhcc-
Confidence 000 00111 111 11 14455667788887
Q ss_pred CChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhc
Q 019635 229 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQS 308 (338)
Q Consensus 229 ~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~ 308 (338)
|.+.||++|+.+|..|..+ ++|+|++|+|++.++++|++|+|+||||+|||+++|+++.+ ..+.+...+.+.
T Consensus 224 ----d~e~lgelm~~nq~LL~~L-gVs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~---~~~~l~~~~~~~ 295 (307)
T COG1577 224 ----DFEELGELMNINQGLLKAL-GVSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEE---IAETLSNRLEKA 295 (307)
T ss_pred ----cHHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccch---HHHHHHHHHHhc
Confidence 8999999999999999887 89999999999999999999999999999999999997622 245565666555
Q ss_pred c
Q 019635 309 R 309 (338)
Q Consensus 309 ~ 309 (338)
+
T Consensus 296 ~ 296 (307)
T COG1577 296 G 296 (307)
T ss_pred C
Confidence 4
No 14
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.92 E-value=5.6e-24 Score=199.51 Aligned_cols=173 Identities=27% Similarity=0.311 Sum_probs=128.9
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeecC
Q 019635 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDFN 70 (338)
Q Consensus 14 gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~~ 70 (338)
+|++.+.|+||.|+|||||||+++|++.|++.+++.++++ +++++| .++++++.
T Consensus 78 ~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~D~~~~~~G---g~~~~~~~ 154 (273)
T TIGR00549 78 PLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGIDTATSTYG---GPVYFEKG 154 (273)
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchHhHHHHhcC---CeEEEEcC
Confidence 4999999999999999999999999999999999987665 566675 46677766
Q ss_pred CCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccC
Q 019635 71 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKN 150 (338)
Q Consensus 71 ~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~ 150 (338)
.. ..+++.|.+..+++++|+++ +.|. .+.+.+.+. ++..
T Consensus 155 ~~-~~~~~~~~~~~lvl~~tg~~---~~T~------------~~~~~v~~~---------------~~~~---------- 193 (273)
T TIGR00549 155 EG-EFTKLISLDGYFVIADTGVS---GSTK------------EAVARVRQL---------------LERF---------- 193 (273)
T ss_pred CC-ceeeccCCCeEEEEEECCCC---CcHH------------HHHHHHHHH---------------HHhC----------
Confidence 43 23444455689999999984 3432 111112110 0000
Q ss_pred CCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 019635 151 GSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSE 230 (338)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~ 230 (338)
.+. .++ ..+++ ..++.+++.+|.++
T Consensus 194 -------------------~~~--------~~~-------------------~~~~~------~~~~~~~~~al~~~--- 218 (273)
T TIGR00549 194 -------------------PEL--------IDS-------------------IMDAI------GELTLEAKAALQDG--- 218 (273)
T ss_pred -------------------HHH--------HHH-------------------HHHHH------HHHHHHHHHHHHhC---
Confidence 000 000 11111 24677888999998
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEE
Q 019635 231 EDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 288 (338)
Q Consensus 231 ~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL 288 (338)
|++.||++|+++|..+++ +++++|++|+|++.+++.|++|+||||||+|||+++|
T Consensus 219 --d~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 219 --DVESLGELMNINQGLLKA-LGVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred --CHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 899999999999998875 5899999999999999999999999999999999986
No 15
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.92 E-value=1.1e-23 Score=198.26 Aligned_cols=203 Identities=24% Similarity=0.235 Sum_probs=163.7
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------eeeeeccCCcEEEeecCCCceEE
Q 019635 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------AISIMAKSGFAELIDFNPIRTTD 76 (338)
Q Consensus 14 gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------~as~~g~~g~~l~id~~~~~~~~ 76 (338)
++.+.+.++||.+.|||||||.+||.+.|++++++.++++ +++++| |..+..+-.++....
T Consensus 77 ~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgHpDNVapa~lG--G~~l~~~~~~~~~~~ 154 (299)
T COG0083 77 GVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGHPDNVAPAVLG--GLVLVEEESGIISVK 154 (299)
T ss_pred cEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCchHHHHhhC--CEEEEeecCCceEEE
Confidence 3899999999999999999999999999999999999887 889998 444444435678888
Q ss_pred eeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCChH
Q 019635 77 VQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPV 156 (338)
Q Consensus 77 v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~ 156 (338)
+++|.++.++++.++. +..| +.|+++|++++ ++.|
T Consensus 155 v~~~~~~~~v~~iP~~---e~sT------------~~aR~vLP~~~------------~~~d------------------ 189 (299)
T COG0083 155 VPFPSDLKLVVVIPNF---EVST------------AEARKVLPKSY------------SRKD------------------ 189 (299)
T ss_pred ccCCcceEEEEEeCCc---cccH------------HHHHHhccccC------------CHHH------------------
Confidence 8888899999999987 3344 68899998864 2221
Q ss_pred HHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 019635 157 FAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKK 236 (338)
Q Consensus 157 ~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~ 236 (338)
.+.+..|+..++.||.++ |.+.
T Consensus 190 -----------------------------------------------------aV~n~s~~a~lv~al~~~-----~~~l 211 (299)
T COG0083 190 -----------------------------------------------------AVFNLSRAALLVAALLEG-----DPEL 211 (299)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHHcC-----CHHH
Confidence 145678999999999998 7888
Q ss_pred HHHHHHh-hHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhcccCCccc
Q 019635 237 LGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVI 315 (338)
Q Consensus 237 lg~lm~~-sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~~~~~~~~ 315 (338)
+..+|.| -|+++|..+ .|+++++.+.+.++|++|+.+|||| +++++++++...+...+.+++.| .++
T Consensus 212 ~~~~~~D~ihepyR~~L---~P~~~~v~~~a~~~gA~g~~lSGAG--PTi~al~~~~~~e~~~~~~~~~~-~~~------ 279 (299)
T COG0083 212 LRAMMKDVIHEPYRAKL---VPGYAEVREAALEAGALGATLSGAG--PTVFALADESDAEKAAALLEELY-EQG------ 279 (299)
T ss_pred HHHHhccccchhhhhhh---CccHHHHHHHHhhCCceEEEEecCC--CeEEEEeccchhhHHHHHHHHHH-HhC------
Confidence 8888887 599999887 8999999999999999999999999 99999998774455555555444 444
Q ss_pred cCCCCceeEEEeec-CCceeeec
Q 019635 316 NNNDLGLYVFASKP-SSGAAKFK 337 (338)
Q Consensus 316 ~~~~~~~~~~~~~p-~~Ga~v~~ 337 (338)
.++.++++.. .+|++++.
T Consensus 280 ----~~~~~~~~~~~~~G~~~v~ 298 (299)
T COG0083 280 ----IKGRVHILALDSDGARVVE 298 (299)
T ss_pred ----CcceEEEEeecCCcceEec
Confidence 3455666554 68988764
No 16
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.91 E-value=2.1e-23 Score=203.48 Aligned_cols=195 Identities=17% Similarity=0.236 Sum_probs=140.5
Q ss_pred cceEEEEEecCCCC----CCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEE
Q 019635 13 QLFNHINSLFFNLG----SGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAE 65 (338)
Q Consensus 13 ~gf~~~i~s~vP~g----sGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l 65 (338)
.||++.|.|++|.+ +|||||||++||++.|++.+++.++++ +++++| |.+.
T Consensus 99 ~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~sg~D~~a~~~G--G~i~ 176 (358)
T TIGR01220 99 PALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGSCGDIAASTYG--GWIA 176 (358)
T ss_pred CceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCCcchhhhhhhC--CEEE
Confidence 58999999999994 699999999999999999999998765 677776 3333
Q ss_pred EeecC----------------------CCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhC
Q 019635 66 LIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 123 (338)
Q Consensus 66 ~id~~----------------------~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~ 123 (338)
+-.+. ++.++++++|.+++|++++|++++ .|. .+.+.+.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~---~T~------------~~v~~V~~~~- 240 (358)
T TIGR01220 177 YSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPA---STA------------SLVSDVHRRK- 240 (358)
T ss_pred EecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCc---CcH------------HHHHHHHHHh-
Confidence 32222 345788999889999999999943 331 1111111100
Q ss_pred CCchhhhcccccccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhH
Q 019635 124 MKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 203 (338)
Q Consensus 124 ~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (338)
.+-+ +. .++ .
T Consensus 241 -------------~~~~----------------~~----------------------~~~-------------------~ 250 (358)
T TIGR01220 241 -------------WRGS----------------AS----------------------YQR-------------------F 250 (358)
T ss_pred -------------hcCh----------------HH----------------------HHH-------------------H
Confidence 0000 00 000 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhhHHHHhhh-----cCCCCHHHHHHHHHHHhCCCcEEEEeC
Q 019635 204 HQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-----YECSCPELEELVNVCRNNGALGARLTG 278 (338)
Q Consensus 204 ~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~-----~~vs~peld~l~e~a~~~Ga~GarisG 278 (338)
.+++. .-+.++.++|+++ |++.|+++|+++|..|+++ .++|+|+++.|++.++++|+ |+|+||
T Consensus 251 l~~~~------~i~~~~~~al~~~-----d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga-~aKlsG 318 (358)
T TIGR01220 251 LETST------DCVESAITAFETG-----DITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGG-AAKPSG 318 (358)
T ss_pred HHHHH------HHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCc-eecCCC
Confidence 11112 3355677888888 8999999999999999875 48999999999999999998 999999
Q ss_pred CCCcceEEEEEcCCchHHHHHHHHHHHHhccc
Q 019635 279 AGWGGCVVALVKESIDSQFILNLKEQFYQSRI 310 (338)
Q Consensus 279 aG~GG~viaL~~~~~~~~~~~~l~~~y~~~~~ 310 (338)
||+|||+++|++++. ..+.+.+.+.+.++
T Consensus 319 AGgGg~~ial~~~~~---~~~~~~~~~~~~G~ 347 (358)
T TIGR01220 319 AGGGDCGIAILDAEA---DITHVRQRWETAGI 347 (358)
T ss_pred CCCcCEEEEEeCCch---hHHHHHHHHHHCCC
Confidence 999999999997643 33455555655663
No 17
>PRK03926 mevalonate kinase; Provisional
Probab=99.91 E-value=7e-23 Score=195.09 Aligned_cols=203 Identities=26% Similarity=0.268 Sum_probs=143.5
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeec
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDF 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~ 69 (338)
.|+++.|.++||+++|||||||+++|++.|++.+++.++++ +++++| |.+++.+.
T Consensus 74 ~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg~D~~~~~~G--g~~~~~~~ 151 (302)
T PRK03926 74 DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASPTDTYVSTMG--GFVTIPDR 151 (302)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCchHHHHHHhcC--CeEEEcCC
Confidence 48999999999999999999999999999999999998765 466777 44444333
Q ss_pred CCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhcc
Q 019635 70 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 149 (338)
Q Consensus 70 ~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~ 149 (338)
. ++++| ++.+++++|+.+ ..|. .+.+.+.+. +...
T Consensus 152 ~-----~l~~~-~~~~vl~~~~~~---~sT~------------~~~~~~~~~---------------~~~~--------- 186 (302)
T PRK03926 152 K-----KLPFP-ECGIVVGYTGSS---GSTK------------ELVANVRKL---------------KEEY--------- 186 (302)
T ss_pred C-----cCCCC-CceEEEEECCCC---CcHH------------HHHHHHHHH---------------HHhC---------
Confidence 2 44433 688999999874 3331 111112110 0000
Q ss_pred CCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019635 150 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~ 229 (338)
.+.+ ++ ..++.. ..+..+..++.++
T Consensus 187 --------------------~~~~--------~~-------------------~~~~~~------~~~~~~~~al~~~-- 211 (302)
T PRK03926 187 --------------------PELI--------EP-------------------ILSSIG------KISEKGEELILSG-- 211 (302)
T ss_pred --------------------HHHH--------HH-------------------HHHHHH------HHHHHHHHHHhcC--
Confidence 0000 00 001111 1122345677787
Q ss_pred ChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhcc
Q 019635 230 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 309 (338)
Q Consensus 230 ~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~~ 309 (338)
|++.|+++|+++|.. .+.+++++|+++++++.+++.|++|++|||||+|||+++|++++..+++.+.+++. .
T Consensus 212 ---d~~~l~~~~~~~~~~-~~~~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~~----~ 283 (302)
T PRK03926 212 ---DYVSLGELMNINQGL-LDALGVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAPEKQSEVATAIKIA----G 283 (302)
T ss_pred ---CHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEeccccHHHHHHHHHhc----C
Confidence 899999999998864 45578999999999999999999999999999999999999887777777777642 2
Q ss_pred cCCccccCCCCceeEEEeecC-Cceeeec
Q 019635 310 IDRGVINNNDLGLYVFASKPS-SGAAKFK 337 (338)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~p~-~Ga~v~~ 337 (338)
..++++++. +|+++..
T Consensus 284 ------------~~~~~~~~~~~G~~i~~ 300 (302)
T PRK03926 284 ------------GKPIITKITDEGLRIEE 300 (302)
T ss_pred ------------CeEEEEecCCCeeEEEe
Confidence 256788885 6998753
No 18
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.91 E-value=2.9e-23 Score=191.31 Aligned_cols=190 Identities=19% Similarity=0.272 Sum_probs=150.6
Q ss_pred eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEeecC
Q 019635 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELIDFN 70 (338)
Q Consensus 15 f~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~id~~ 70 (338)
+++...+|+|+|+||+||||++||++.|+..+-|..+++ ++++||. +.+++|.
T Consensus 90 ~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GG---FnfMEf~ 166 (333)
T COG2605 90 IELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGG---FNFMEFR 166 (333)
T ss_pred eEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCC---ceEEEEc
Confidence 899999999999999999999999999999999998766 8888964 7889999
Q ss_pred C---CceEEeeCCC------CceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhh
Q 019635 71 P---IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 141 (338)
Q Consensus 71 ~---~~~~~v~lp~------~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~ 141 (338)
+ ..+.|+++.. ..+++++++|+. |.+..++.+|. +.+.+
T Consensus 167 ~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~------------------R~Ss~V~~dQ~--------------~~~~~ 214 (333)
T COG2605 167 GNGEVVVNPLRINRERTAELEARLLLYYTGIT------------------RQSSEVIEDQV--------------RNVVD 214 (333)
T ss_pred CCCcEEEeecccchhHHHHHHhceEEEEeccc------------------cchhHHHHHHH--------------HHhhc
Confidence 8 3567777753 378999999984 44556666642 11100
Q ss_pred hhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 019635 142 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 221 (338)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~ 221 (338)
..+|. .++.|-+. .-+.++.
T Consensus 215 ---------------------------~~~~~-------------------------------~e~~~~mk--~~A~~~~ 234 (333)
T COG2605 215 ---------------------------GDEET-------------------------------LEALHEMK--ALAYEMK 234 (333)
T ss_pred ---------------------------ccHHH-------------------------------HHHHHHHH--HHHHHHH
Confidence 00000 01111111 2334667
Q ss_pred HHHhcCCCChhhHHHHHHHHHhhHHHHhhh-cCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHH
Q 019635 222 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 300 (338)
Q Consensus 222 ~aL~~~~~~~~d~~~lg~lm~~sh~slr~~-~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~ 300 (338)
++|.++ |+..||.+|+..|+..+.+ -++|+|.+|.|++.|+++||+|+|++|||.||+++.+|++....+++++
T Consensus 235 ~al~~n-----d~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~ 309 (333)
T COG2605 235 DALVRN-----DIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKRNELARA 309 (333)
T ss_pred HHHHhc-----chHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccchHHHHHH
Confidence 788887 8999999999999988877 5799999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 019635 301 LKEQ 304 (338)
Q Consensus 301 l~~~ 304 (338)
|+.+
T Consensus 310 l~~~ 313 (333)
T COG2605 310 LEKE 313 (333)
T ss_pred HHHh
Confidence 8764
No 19
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.90 E-value=1.4e-22 Score=215.06 Aligned_cols=190 Identities=14% Similarity=0.155 Sum_probs=138.2
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeec
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDF 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~ 69 (338)
.||++.|.|+||+|+|||||||++||++.|++.+++.++++ +++++| .++++++
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~G---G~~~i~~ 801 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLP---GVKLLQT 801 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcC---CeEEEEe
Confidence 48999999999999999999999999999999999998766 666775 4777887
Q ss_pred CC-C----ceEEeeCCC------CceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccc
Q 019635 70 NP-I----RTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 138 (338)
Q Consensus 70 ~~-~----~~~~v~lp~------~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d 138 (338)
.+ . .+++++.+. +-++++++||++ +.+ .+++.+.. +.+..
T Consensus 802 ~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGit---R~T---------------~~iV~~Vv-----------~~~~~ 852 (974)
T PRK13412 802 GAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGIT---RTA---------------KGILAEIV-----------RSMFL 852 (974)
T ss_pred cCCcccCcceeecCcchhhhhhccCcEEEEECCCe---eeH---------------HHHHHHHH-----------HHHHh
Confidence 76 2 345555442 347999999984 222 23332210 00000
Q ss_pred hhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHH
Q 019635 139 VEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 218 (338)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~ 218 (338)
-. +... .+.+++. .-+.
T Consensus 853 ~~------------------------------~~~~---------------------------~~l~~ig------~La~ 869 (974)
T PRK13412 853 NS------------------------------TAHL---------------------------QLLHEMK------AHAL 869 (974)
T ss_pred Cc------------------------------HHHH---------------------------HHHHHHH------HHHH
Confidence 00 0000 0111111 2245
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhhHHHHhhh-cCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC-CchHH
Q 019635 219 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQ 296 (338)
Q Consensus 219 ~~~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~-~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~-~~~~~ 296 (338)
++.++|+++ |++.||++|+.+|..++.+ -++|+|++|.|++.|++ ||+|+|+||||+|||+++++++ +.+++
T Consensus 870 ea~~ALe~g-----D~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~~~~a~~ 943 (974)
T PRK13412 870 DMYEAIQRG-----EFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKDPGAAER 943 (974)
T ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECChhhHHH
Confidence 677888998 8999999999999877766 58999999999999965 7999999999999999999965 46667
Q ss_pred HHHHHHH
Q 019635 297 FILNLKE 303 (338)
Q Consensus 297 ~~~~l~~ 303 (338)
+.+.+++
T Consensus 944 I~~~L~~ 950 (974)
T PRK13412 944 IRKILTE 950 (974)
T ss_pred HHHHHHh
Confidence 7777755
No 20
>PLN02451 homoserine kinase
Probab=99.90 E-value=5e-22 Score=194.24 Aligned_cols=206 Identities=22% Similarity=0.296 Sum_probs=158.3
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc----------------------eeeeeccCCcEEEeecC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK----------------------AISIMAKSGFAELIDFN 70 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~----------------------~as~~g~~g~~l~id~~ 70 (338)
.|+++.|.++||.|+|||||||..+|++.|++.+++.++++ +++++| |.++..+..
T Consensus 133 ~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h~Dnva~a~~G--G~v~~~~~~ 210 (370)
T PLN02451 133 VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGYHADNIAPALMG--GFVLIRSYE 210 (370)
T ss_pred CCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCCCccchhHhhcC--CEEEEEecC
Confidence 48999999999999999999999999999999999998876 235676 555554566
Q ss_pred CCceEEeeCC--CCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhc
Q 019635 71 PIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 148 (338)
Q Consensus 71 ~~~~~~v~lp--~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~ 148 (338)
+.+..++++| +++.|++++++++ ..| ..+.+.|.+.+ .+.
T Consensus 211 ~~~~~~~~~p~~~~~~~Vlv~P~~~---~sT------------~~ar~~lp~~~------------~~~----------- 252 (370)
T PLN02451 211 PLHLIPLRFPSAKDLFFVLVSPDFE---APT------------KKMRAALPKEI------------PMK----------- 252 (370)
T ss_pred CCeEEEeecCCCCCeEEEEEcCCCC---ccH------------HHHHHHHhhhc------------chh-----------
Confidence 6677777776 5799999999873 233 34444443321 000
Q ss_pred cCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019635 149 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~ 228 (338)
.++ .+..|+..++.+|.++
T Consensus 253 -----------------------------------------------------------~~v-~~~~~~~~l~~al~~~- 271 (370)
T PLN02451 253 -----------------------------------------------------------HHV-WNCSQAAALVAAILQG- 271 (370)
T ss_pred -----------------------------------------------------------hHH-HHHHHHHHHHHHHHcC-
Confidence 011 1234556677888888
Q ss_pred CChhhHHHHHHHHHhh--HHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC-CchHHHHHHHHHHH
Q 019635 229 SEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQF 305 (338)
Q Consensus 229 ~~~~d~~~lg~lm~~s--h~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~-~~~~~~~~~l~~~y 305 (338)
|++.++++|++. |+.++.. ++|+++++++.+++.|++|++|||+| +|+++|+++ +.++++.+++++.|
T Consensus 272 ----d~~~l~~~m~nD~~~e~~r~~---~~P~l~~l~~~~~~~GA~ga~mSGSG--ptvfal~~~~~~a~~i~~~l~~~~ 342 (370)
T PLN02451 272 ----DAVLLGEALSSDKIVEPTRAP---LIPGMEAVKKAALEAGAYGCTISGAG--PTAVAVIDDEEKGEEVGERMVEAF 342 (370)
T ss_pred ----CHHHHHHHHHHHHHhHHHHhh---hCccHHHHHHHHHHCCCeEEEEEccc--hheEEEEcCHHHHHHHHHHHHHHH
Confidence 899999999854 7778754 48999999999999999999999999 899999976 46788999999888
Q ss_pred HhcccCCccccCCCCceeEEEeecCC-ceeeec
Q 019635 306 YQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 337 (338)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 337 (338)
.+.++ ..+.++++++.. |+++..
T Consensus 343 ~~~~~---------~~~~~~~~~~d~~Ga~v~~ 366 (370)
T PLN02451 343 RKAGN---------LKATASVKKLDRVGARLVE 366 (370)
T ss_pred HHhcC---------CCceEEEeccCCCCeEEEe
Confidence 66543 567899999985 998853
No 21
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.86 E-value=3.6e-20 Score=174.43 Aligned_cols=218 Identities=21% Similarity=0.251 Sum_probs=151.9
Q ss_pred eecccc----eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCC----------------------------------
Q 019635 9 ITKFQL----FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVE---------------------------------- 50 (338)
Q Consensus 9 ~~~~~g----f~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~---------------------------------- 50 (338)
..+..| +.+.|+|.+|+|+||+||||++|+++.+++.+.|.-
T Consensus 122 ~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSG 201 (397)
T KOG1511|consen 122 CLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSG 201 (397)
T ss_pred hhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcc
Confidence 344556 889999999999999999999999999999987651
Q ss_pred CcceeeeeccCCcEEEeecCCC-ceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhh
Q 019635 51 VPKAISIMAKSGFAELIDFNPI-RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEA 129 (338)
Q Consensus 51 ls~~as~~g~~g~~l~id~~~~-~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~ 129 (338)
+|.++|.+|. +|.|++. .++.++--+.++++++||.++.|..... . ..+.+..+
T Consensus 202 iDnaV~t~Gg-----~i~f~kg~~~~~Lk~~~~L~illtnTrv~RnTk~lV-----a-------~Vr~~~~k-------- 256 (397)
T KOG1511|consen 202 IDNAVCTYGG-----LISFKKGVEIESLKHLPPLRILLTNTRVPRNTKALV-----A-------GVRELLEK-------- 256 (397)
T ss_pred cchhhhccCc-----eEEeecCccceecccCCCceEEEEccccCccHHHHH-----H-------HHHHHHHh--------
Confidence 1117777874 5667774 7777777778999999999975432221 0 01111111
Q ss_pred hcccccccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHH
Q 019635 130 ISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAH 209 (338)
Q Consensus 130 ~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~h 209 (338)
+.++. +..+ .. .+
T Consensus 257 ------fPevi-------------------~~i~-------~a--------id--------------------------- 269 (397)
T KOG1511|consen 257 ------FPEVI-------------------KAIF-------DA--------ID--------------------------- 269 (397)
T ss_pred ------hhHHH-------------------HHHH-------HH--------HH---------------------------
Confidence 11121 1100 00 00
Q ss_pred HHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEE
Q 019635 210 VYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 287 (338)
Q Consensus 210 v~~E~~rv~~~~~aL~~~~--~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~via 287 (338)
.-..+++..|.+.+ .+...-+.|.++|.-+|..|..+ +||+|.+|.++...++.| +.+||||||+|||+++
T Consensus 270 -----~is~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~al-GVsH~~le~v~~~t~k~g-i~sKLTGAGgGGc~it 342 (397)
T KOG1511|consen 270 -----EISLEAVWILQRENDEFSSPKEQKLEELIRINQDLLDAL-GVSHPSLELVCTTTRKLG-IHSKLTGAGGGGCVIT 342 (397)
T ss_pred -----HHHHHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHh-CCCcHHHHHHHHHHHHhC-cceecccCCCCceEEE
Confidence 11122233333210 01112224999999999877766 999999999999999999 5779999999999999
Q ss_pred EEcCCchHHHHHHHHHHHHhcccCCccccCCCCceeEEEeecC-Cceeeec
Q 019635 288 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPS-SGAAKFK 337 (338)
Q Consensus 288 L~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~~ 337 (338)
|.+++...+.++.++++....+| .+|.+..+ .|+++.+
T Consensus 343 lL~~~~~qe~i~~~ke~L~s~gf------------~v~~t~lGG~G~~v~s 381 (397)
T KOG1511|consen 343 LLKPGTEQEQIDKWKEELESHGF------------EVFETELGGPGVSVHS 381 (397)
T ss_pred EECCCCchHHHHHHHHHHHhcCc------------ceeeccCCCCceEEEe
Confidence 99999888899999999888764 68888886 4988864
No 22
>PRK01212 homoserine kinase; Provisional
Probab=99.86 E-value=2.1e-20 Score=178.02 Aligned_cols=203 Identities=22% Similarity=0.262 Sum_probs=151.1
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------eeeeeccCCcEEEeecCCCceE
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------AISIMAKSGFAELIDFNPIRTT 75 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------~as~~g~~g~~l~id~~~~~~~ 75 (338)
.|+++.|.++||.++||+||||..+|++.|++.+++.+++. .++++| |.++..+..+..+.
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~~~ddv~~~l~G--G~~~~~~g~g~~~~ 157 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEGHPDNVAPALLG--GLVLALEENGVISV 157 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHhC--CEEEEEECCceEEE
Confidence 47999999999999999999999999999999999998775 245565 33333345666788
Q ss_pred EeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCCh
Q 019635 76 DVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDP 155 (338)
Q Consensus 76 ~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~ 155 (338)
++++|+++.+++++++.. ..| ..+.+.|.+.+ .+
T Consensus 158 ~~~~~~~~~~vlv~p~~~---~sT------------~~a~~~l~~~~------------~~------------------- 191 (301)
T PRK01212 158 KIPVFDDLKWVVAIPNIE---LST------------AEARAVLPKQY------------SL------------------- 191 (301)
T ss_pred EecCCCCeEEEEEECCCc---CCH------------HHHHHhCcCcC------------CH-------------------
Confidence 888888888999998763 222 22222221100 00
Q ss_pred HHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 019635 156 VFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 235 (338)
Q Consensus 156 ~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~ 235 (338)
.+.+.+..|+..++.+|.++ |++
T Consensus 192 ----------------------------------------------------~~~~~~~~~~~~l~~al~~~-----d~~ 214 (301)
T PRK01212 192 ----------------------------------------------------KDAVFNSSRAALLVAALYTG-----DYE 214 (301)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHhhC-----CHH
Confidence 00122345667788889887 899
Q ss_pred HHHHHHHh-hHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhcccCCcc
Q 019635 236 KLGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGV 314 (338)
Q Consensus 236 ~lg~lm~~-sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~~~~~~~ 314 (338)
.+++.|++ .|+.+|... +|+++++++.+++.|++|++|||+| +|+++|+++...+++.+.+++.| ..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~---~p~~~~i~~~~~~~Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~~~-~~~----- 283 (301)
T PRK01212 215 LAGRAMKDVLHEPYRAKL---IPGFAEVRQAALEAGALGAGISGAG--PTVFALCDKEDAEKVADALQKAF-LQG----- 283 (301)
T ss_pred HHHHHhchhheHHhHHhh---CCCHHHHHHHHHHCCCeEEEEEchh--hheeEEeccccHHHHHHHHHHhh-ccC-----
Confidence 99999965 366775432 6999999999999999999999998 99999998765588888888876 233
Q ss_pred ccCCCCceeEEEeecCC-ceeee
Q 019635 315 INNNDLGLYVFASKPSS-GAAKF 336 (338)
Q Consensus 315 ~~~~~~~~~~~~~~p~~-Ga~v~ 336 (338)
.++.+++++++. |++++
T Consensus 284 -----~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 284 -----IEGFVHVLRLDTAGARVL 301 (301)
T ss_pred -----CCeEEEEeccCCCceEeC
Confidence 567899999985 99764
No 23
>PTZ00299 homoserine kinase; Provisional
Probab=99.85 E-value=2e-20 Score=180.47 Aligned_cols=206 Identities=22% Similarity=0.212 Sum_probs=155.5
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCc---c-----------------eeeeeccCCcEEEeecCC-
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVP---K-----------------AISIMAKSGFAELIDFNP- 71 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls---~-----------------~as~~g~~g~~l~id~~~- 71 (338)
.|+++.+.++||.++||+||||..+|.+.|++++++.+++ + .++++| |.++.....+
T Consensus 81 ~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EGHpDNVapal~G--G~~~~~~~~~g 158 (336)
T PTZ00299 81 PPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEGHPDNAAPAIYG--GIQLVYKKDNG 158 (336)
T ss_pred CceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcCCcccHHHHHhC--CEEEEEecCCC
Confidence 3799999999999999999999999999999999999885 2 556676 4444443333
Q ss_pred -CceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccC
Q 019635 72 -IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKN 150 (338)
Q Consensus 72 -~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~ 150 (338)
....+++.|+++.++++.+...- +..| ..|+++|++++ ++.
T Consensus 159 e~~~~~i~~~~~~~~vv~iP~~~~-~~sT------------~~aR~vLP~~v------------~~~------------- 200 (336)
T PTZ00299 159 RFLTYRVPTPPNLSVVLFVPHNKM-KANT------------HVTRNLIPTSV------------SLE------------- 200 (336)
T ss_pred ceEEEecCCCCCeEEEEEECCCCc-cccH------------HHHHhhCcccC------------cHH-------------
Confidence 33557777778999998887520 0122 34555555432 111
Q ss_pred CCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 019635 151 GSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSE 230 (338)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~ 230 (338)
..+.+..|+..++.+|.++
T Consensus 201 ----------------------------------------------------------dav~n~~~~~~lv~al~~~--- 219 (336)
T PTZ00299 201 ----------------------------------------------------------DAVFNISRTSILVLALSTG--- 219 (336)
T ss_pred ----------------------------------------------------------HHHHhhhHHHHHHHHHHhC---
Confidence 1133456677788999998
Q ss_pred hhhHHHHHHHHHhhHHHHhh-hcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC------------CchHHH
Q 019635 231 EDKLKKLGDLMNDSHHSCSV-LYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE------------SIDSQF 297 (338)
Q Consensus 231 ~~d~~~lg~lm~~sh~slr~-~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~------------~~~~~~ 297 (338)
|++.+..+...-|+++|. .+ .|+++.+++.+++.|++|+.||||| +++++|++. ...+++
T Consensus 220 --d~~ll~~~~D~lhep~R~~~l---iP~~~~v~~~~~~~Ga~g~~lSGSG--PTv~al~~~~~~~~~~~~~~~~~~~~i 292 (336)
T PTZ00299 220 --DLRMLKSCSDKLHEQQRSDAL---FPHFRPCVKAAREAGAHYAFLSGAG--PSVCALVGGRHGDPLTQPREERKAESV 292 (336)
T ss_pred --CHHHHHhchhcccCccccccc---CccHHHHHHHHHHCCCeEEEEEchh--hhheEEeccccccccccccchhHHHHH
Confidence 899986543336888884 43 7999999999999999999999999 999999972 236788
Q ss_pred HHHHHHHHHhcccCCccccCCCCceeEEEeecCC-ceeee
Q 019635 298 ILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 336 (338)
Q Consensus 298 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 336 (338)
.++|++.|.+.+ +++.+++++++. |+++.
T Consensus 293 ~~~~~~~~~~~~----------~~~~~~~~~~~~~G~~~~ 322 (336)
T PTZ00299 293 AEAMIKAAEAVG----------VAGRVIITQPSDQGVHLV 322 (336)
T ss_pred HHHHHHHHHHcC----------CceEEEEccCCCCCcEEE
Confidence 899998887665 678999999985 99986
No 24
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.85 E-value=8.1e-20 Score=174.34 Aligned_cols=200 Identities=20% Similarity=0.223 Sum_probs=138.1
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------eeeeeccCCcEEEeecCCCceE
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------AISIMAKSGFAELIDFNPIRTT 75 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------~as~~g~~g~~l~id~~~~~~~ 75 (338)
.|+++.|.++||.++||+||||..+|++.|++.+++.++++ .++++| | +.+.....-...
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~h~Dnv~~~l~G--G-~~~~~~~~~~~~ 155 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEGHPDNVAPALLG--G-FQLAFVEDDKLE 155 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcCCcccHHHHhcc--C-EEEEEEcCCceE
Confidence 47999999999999999999999999999999999998776 345666 3 444443333355
Q ss_pred EeeCC--CCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCC
Q 019635 76 DVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSS 153 (338)
Q Consensus 76 ~v~lp--~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~ 153 (338)
++++| +++.+++++++.+ ..| +.+.++|++.+ +..+
T Consensus 156 ~~~~~~~~~~~~vl~~p~~~---~sT------------~~a~~~lp~~~------------~~~~--------------- 193 (302)
T TIGR00191 156 VLKIPIFSKLDWVLAIPNIE---VST------------AEARAVLPKAY------------PRQD--------------- 193 (302)
T ss_pred EEEeCCCCCEEEEEEECCCc---ccH------------HHHHHhCcccC------------CHHH---------------
Confidence 55554 6799999999873 233 23333332211 0000
Q ss_pred ChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 019635 154 DPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 233 (338)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d 233 (338)
.+.+..|...++.+|.++ +
T Consensus 194 --------------------------------------------------------~v~~~~~~~~l~~al~~~-----~ 212 (302)
T TIGR00191 194 --------------------------------------------------------LVFNLSHLAGLVHAIYQK-----K 212 (302)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHcC-----C
Confidence 011223444456778776 5
Q ss_pred HHHHHHHHHhh--HHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHH-HHHHHHHHHHhccc
Q 019635 234 LKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQ-FILNLKEQFYQSRI 310 (338)
Q Consensus 234 ~~~lg~lm~~s--h~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~-~~~~l~~~y~~~~~ 310 (338)
++ +++.+.+. |+++|.. .+|+++++++.+++.|++|++||||| +|+++|++++...+ +.+.++. +.+.+
T Consensus 213 ~~-l~~~~~~d~l~e~~~~~---l~p~l~~i~~~~~~~Ga~g~~lSGsG--ptv~al~~~~~~~~~~~~~~~~-~~~~~- 284 (302)
T TIGR00191 213 PD-LGAIMMKDRIHQPYRES---LIPNLFKIKQAALEKGAYGITISGSG--PTILAMADEEFAEQKEQDLLEV-LHKQG- 284 (302)
T ss_pred HH-HHHHHcccccchhhHhh---hCCCHHHHHHHHHHCCCeEEEEEchh--hhheEEecchhhHHHHHHHHHH-HHhcC-
Confidence 55 45544433 7888854 38999999999999999999999999 99999998764444 3444443 33332
Q ss_pred CCccccCCCCceeEEEeecCC-ceee
Q 019635 311 DRGVINNNDLGLYVFASKPSS-GAAK 335 (338)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~p~~-Ga~v 335 (338)
.++.++++++.. |+++
T Consensus 285 ---------~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 285 ---------IEGTVHVLDFDNDGARV 301 (302)
T ss_pred ---------CCeEEEEcccCCCCeEe
Confidence 467899999975 9876
No 25
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=1.5e-17 Score=159.50 Aligned_cols=208 Identities=16% Similarity=0.172 Sum_probs=140.2
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.||++.|.++||.++|||||||..+|++.|++.+++.++++ .++++| |.++.. -..-...+++
T Consensus 85 ~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~~~G--G~~~~~-~~g~~~~~~~ 161 (312)
T PRK02534 85 GGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELGSDVPFCIAG--GTQLCF-GRGEILEPLP 161 (312)
T ss_pred CCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCcEEeEC--CeEEEE-CCCCEeEECC
Confidence 47999999999999999999999999999999999998876 455555 333222 2333467787
Q ss_pred CCCCceEEEE-ecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCChHH
Q 019635 79 LPAGGTFVVA-HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVF 157 (338)
Q Consensus 79 lp~~~~~vv~-~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~ 157 (338)
.|+++.++++ +++.. ..| ..|.+.+.+.+. .. ....+.
T Consensus 162 ~~~~~~~vv~~~p~~~---~~T------------~~a~~~~~~~~~--~~------~~~~~~------------------ 200 (312)
T PRK02534 162 DLDGLGVVLAKYPSLS---VST------------PWAYKTYRQQFG--DT------YLSDEE------------------ 200 (312)
T ss_pred CCCCcEEEEEECCCCC---ccH------------HHHHHHHhhhcc--cc------cccCcc------------------
Confidence 7788988887 68763 233 223332322110 00 000000
Q ss_pred HHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 019635 158 AVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKL 237 (338)
Q Consensus 158 ~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~l 237 (338)
.++ .+.+..|...++.+|.++ |++.+
T Consensus 201 ---------------------------------------------~~~----~~~~~~~~~~l~~al~~~-----d~~~~ 226 (312)
T PRK02534 201 ---------------------------------------------DFE----QRRQALRSGPLLQAISAK-----DPPPI 226 (312)
T ss_pred ---------------------------------------------ccc----ccccccchhHHHHhhhcc-----CHHHH
Confidence 000 012234455577788887 89999
Q ss_pred HHHHHhhHHHHhhhcCCCCHHHHHHHHHHH-hCCCcEEEEeCCCCcceEEEEEcCC-chHHHHHHHHHHHHhcccCCccc
Q 019635 238 GDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQFYQSRIDRGVI 315 (338)
Q Consensus 238 g~lm~~sh~slr~~~~vs~peld~l~e~a~-~~Ga~GarisGaG~GG~viaL~~~~-~~~~~~~~l~~~y~~~~~~~~~~ 315 (338)
++.|+ +.|++...-..|++.++++.++ +.|++|+.|||+| +|+++|+++. .++++.+.+++.+...
T Consensus 227 ~~~~~---n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~~~~~~~------- 294 (312)
T PRK02534 227 AQLLH---NDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVREAFADP------- 294 (312)
T ss_pred HHhhh---CchHHHhHhcChHHHHHHHHHHhccCCCeeEEECcC--cceEEEeCCHHHHHHHHHHHHHHhccC-------
Confidence 88774 4455443224688888888887 8999999999999 9999999764 6677778887655322
Q ss_pred cCCCCceeEEEeecCC-ceee
Q 019635 316 NNNDLGLYVFASKPSS-GAAK 335 (338)
Q Consensus 316 ~~~~~~~~~~~~~p~~-Ga~v 335 (338)
...++++++.. |+++
T Consensus 295 -----~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 295 -----GLDAWVCQFISHGIQL 310 (312)
T ss_pred -----ceEEEEEEecCCCcee
Confidence 23688888864 9865
No 26
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.76 E-value=9.5e-17 Score=153.03 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=132.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.++++.|.++||+++||+||||..+|++.|++.+++.++++ .++++| .+++.+-..-...+++
T Consensus 82 ~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig~dv~~~~~G---G~~~~~~~g~~~~~~~ 158 (300)
T PRK03188 82 PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELGSDVPFALLG---GTALGTGRGEQLAPVL 158 (300)
T ss_pred CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchhhcC---CeEEEEecCCEEEECC
Confidence 37899999999999999999999999999999999998876 344454 3444444434456655
Q ss_pred CCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCChHHH
Q 019635 79 LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFA 158 (338)
Q Consensus 79 lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (338)
.+.++.++++.+... ..| ..+.+.+.+. +..
T Consensus 159 ~~~~~~~~lv~p~~~---~sT------------~~~~~~l~~~---------------~~~------------------- 189 (300)
T PRK03188 159 ARGTFHWVLAFADGG---LST------------PAVFRELDRL---------------REA------------------- 189 (300)
T ss_pred CCCCcEEEEEeCCCC---CCH------------HHHHHhchhh---------------hcc-------------------
Confidence 555555555444331 122 1122211110 000
Q ss_pred HHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 019635 159 VKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLG 238 (338)
Q Consensus 159 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg 238 (338)
+. +....++..++.++.++ |++.++
T Consensus 190 -----------------------~~---------------------------~~~~~~~~~~~~al~~~-----d~~~l~ 214 (300)
T PRK03188 190 -----------------------GD---------------------------PPRLGEPDPLLAALRAG-----DPAQLA 214 (300)
T ss_pred -----------------------cc---------------------------ccccccHHHHHHHHHcC-----CHHHHH
Confidence 00 00012345677788887 899999
Q ss_pred HHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC-CchHHHHHHHHHHHHhcccCCccccC
Q 019635 239 DLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQSRIDRGVINN 317 (338)
Q Consensus 239 ~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~ 317 (338)
++|++..+.++-. .+|+++++++.+++.|++|++|||+| +++++|+++ +.++++.+.+++ .+
T Consensus 215 ~~~~n~le~~~~~---~~p~l~~l~~~~~~~Galga~lSGsG--~tv~~l~~~~~~~~~~~~~l~~----~g-------- 277 (300)
T PRK03188 215 PLLGNDLQAAALS---LRPSLRRTLRAGEEAGALAGIVSGSG--PTCAFLCADADSAVDVAAALSG----AG-------- 277 (300)
T ss_pred HHhhCcCHHHHHH---hCchHHHHHHHHHHCCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHh----cC--------
Confidence 9997544444432 28999999999999999999999999 779999976 345556655544 22
Q ss_pred CCCceeEEEeec-CCceeeec
Q 019635 318 NDLGLYVFASKP-SSGAAKFK 337 (338)
Q Consensus 318 ~~~~~~~~~~~p-~~Ga~v~~ 337 (338)
....++++++ ..|++|++
T Consensus 278 --~~~~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 278 --VCRTVRVATGPVPGARVVS 296 (300)
T ss_pred --cceeEEEeeccccceEecc
Confidence 3456777665 46999875
No 27
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.74 E-value=2.4e-16 Score=151.85 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=137.6
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------eeeeeccCCcEEEee--cC---
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------AISIMAKSGFAELID--FN--- 70 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------~as~~g~~g~~l~id--~~--- 70 (338)
.|+++.|.++||.++||+||||..+|.+.|++.+++.++++ +++.+| |.++.-. +.
T Consensus 81 ~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~s~~~va~~~~G--G~vv~~G~~~~~~~ 158 (324)
T TIGR00144 81 EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGTSGIGVASFEDG--GFIVDGGHSSKEKS 158 (324)
T ss_pred CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCCCccceeeeeeC--CEEEECCccccccc
Confidence 37999999999999999999999999999999999998876 777777 3332200 11
Q ss_pred ------------CCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccc
Q 019635 71 ------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 138 (338)
Q Consensus 71 ------------~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d 138 (338)
|..+..+++| +|.|+++.+..+ +... ....++|++.. .+
T Consensus 159 ~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~--~t~~------------are~~~lp~~~------------~i-- 209 (324)
T TIGR00144 159 DFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID--SVSG------------RREVNIFQKYC------------PV-- 209 (324)
T ss_pred ccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC--CCCc------------HHHHHHHHhcC------------CC--
Confidence 1235666677 899999998763 1111 11223354420 00
Q ss_pred hhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHH-
Q 019635 139 VEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV- 217 (338)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv- 217 (338)
+.++ +.+..|+
T Consensus 210 ------------------------------~~~d--------------------------------------v~~~~~~~ 221 (324)
T TIGR00144 210 ------------------------------PLRD--------------------------------------VERICHLI 221 (324)
T ss_pred ------------------------------CHHH--------------------------------------HHHHHHHH
Confidence 0011 1223344
Q ss_pred -HHHHHHHhcCCCChhhHHHHHHHHHhh--------HHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEE
Q 019635 218 -HAFKDTVSSNLSEEDKLKKLGDLMNDS--------HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 288 (338)
Q Consensus 218 -~~~~~aL~~~~~~~~d~~~lg~lm~~s--------h~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL 288 (338)
.+++.+|.++ |++.|++.|++. |+++| .|.+..+++.+++ ++|+-|||+| +|+++|
T Consensus 222 l~~l~~al~~~-----d~~~~~~~l~d~~~~~f~~~~~~~r------~~li~~~~~~l~~--a~g~~iSGsG--PTv~al 286 (324)
T TIGR00144 222 LMKMMPAVVEG-----DLDAFGESVNEIQGLGFKKIERELQ------DPLIKRIIDSMIS--APGAGMSSFG--PTVYAV 286 (324)
T ss_pred HHHHHHHHHhc-----CHHHHHHHHHHHHhhcchhhhcccc------CHHHHHHHHHHHh--ccCceecCCC--CeEEEE
Confidence 3358888888 899999999873 33444 4566666666554 4899999888 999999
Q ss_pred EcCCchHHHHHHHHHHHHhcccCCccccCCCCceeEEEeecC-Cceeee
Q 019635 289 VKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPS-SGAAKF 336 (338)
Q Consensus 289 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~ 336 (338)
++++ .+++.+++.+.|.+.+ ..+.++++++. .||++.
T Consensus 287 ~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 287 TDEK-PGNIAGAVADIFGPYG----------VYGRIIVTKARNRGAFII 324 (324)
T ss_pred ecCc-hHHHHHHHHHHhhhCC----------CceEEEEEccCCCCCEeC
Confidence 9764 6778888888765443 57789999998 599873
No 28
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.74 E-value=4.3e-17 Score=154.29 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=125.9
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.||++.|.++||.++||+||||..+|++.|++.+++.++++ .++++| | +.+.+...-...+++
T Consensus 83 ~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~~~G--g-~~~~~~~g~~~~~~~ 159 (286)
T PRK00128 83 QGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGSDVPFCIYG--G-TALATGRGEKITPLK 159 (286)
T ss_pred CCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCCCCCeEeeC--C-eEEEecCCcccccCC
Confidence 47999999999999999999999999999999999998776 556665 3 445554444556666
Q ss_pred CCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCChHHH
Q 019635 79 LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFA 158 (338)
Q Consensus 79 lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (338)
.+++..+++++++.. ..|. .+.+.+.. ..
T Consensus 160 ~~~~~~~vv~~p~~~---~~T~------------~~~~~~~~----------------~~-------------------- 188 (286)
T PRK00128 160 SPPSCWVVLAKPDIG---VSTK------------DVYKNLDL----------------DK-------------------- 188 (286)
T ss_pred CCCCcEEEEEcCCCC---CCHH------------HHHhcCcc----------------cc--------------------
Confidence 666778999988762 2221 11110000 00
Q ss_pred HHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 019635 159 VKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLG 238 (338)
Q Consensus 159 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg 238 (338)
. ....+..++.++.++ |++.++
T Consensus 189 --------------------------------------------~---------~~~~~~~~~~~l~~~-----d~~~~~ 210 (286)
T PRK00128 189 --------------------------------------------I---------SHPDTEKLIEAIEEG-----DYQGIC 210 (286)
T ss_pred --------------------------------------------c---------cCcchHHHHHHHhcC-----CHHHHH
Confidence 0 001134456677777 899999
Q ss_pred HHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCC-chHHHHHHHHHH
Q 019635 239 DLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQ 304 (338)
Q Consensus 239 ~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~-~~~~~~~~l~~~ 304 (338)
.+|++..+.++.. .+|+++++++.+++.|++|++|||+| ||+++|++++ .++++.+.+++.
T Consensus 211 ~~~~n~l~~~~~~---~~p~l~~l~~~~~~~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~~~ 272 (286)
T PRK00128 211 ANMGNVLENVTLK---KYPEIAKIKERMLKFGADGALMSGSG--PTVFGLFDDESRAQRIYNGLKGF 272 (286)
T ss_pred HhccCcHHHHHHh---hChHHHHHHHHHHhcCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhHhh
Confidence 9987655555532 27999999999999999999999999 9999999763 567777777654
No 29
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.68 E-value=1.6e-15 Score=143.91 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=122.9
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-------------eeeeeccCCcEEEeecCCCceEEeeC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-------------AISIMAKSGFAELIDFNPIRTTDVQL 79 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-------------~as~~g~~g~~l~id~~~~~~~~v~l 79 (338)
.|+++.|.++||+++|||||||..+|++.|++.++|.++++ .+.++...|.+ +.-...-..++++.
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~Dvp~~l~~gg~~-~~~g~g~~~~~~~~ 160 (287)
T PRK14616 82 KGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGADVPYFLEMKGLA-YATGIGDELEDLQL 160 (287)
T ss_pred CCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEeccCCcE-EEEEcCceeEECCc
Confidence 47999999999999999999999999999999999998886 22221111333 22222234555555
Q ss_pred CCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCChHHHH
Q 019635 80 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAV 159 (338)
Q Consensus 80 p~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~ 159 (338)
+..+.+++++++.. ..| ..|.+.|.+.+. .
T Consensus 161 ~~~~~~vvv~P~~~---vsT------------~~a~~~l~~~~~------------~----------------------- 190 (287)
T PRK14616 161 TLPFHIVTVFPEEH---IST------------VWAYKNFYRRFE------------R----------------------- 190 (287)
T ss_pred CCCcEEEEECCCCC---cCH------------HHHHHHhhhhcc------------c-----------------------
Confidence 55678899988873 333 234444433210 0
Q ss_pred HHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 019635 160 KEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGD 239 (338)
Q Consensus 160 ~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg~ 239 (338)
...++..++.++... +|++.++.
T Consensus 191 -----------------------------------------------------~~~~~~~l~~~l~~~----~~~~l~~~ 213 (287)
T PRK14616 191 -----------------------------------------------------ERPDLKTLVRRLCLD----GDTSVLPA 213 (287)
T ss_pred -----------------------------------------------------CCchHHHHHHHHhcC----CHHHHHHH
Confidence 001112233333332 15666666
Q ss_pred HHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC-CchHHHHHHHHHHHHh
Q 019635 240 LMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQ 307 (338)
Q Consensus 240 lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~-~~~~~~~~~l~~~y~~ 307 (338)
++|+- +++|..+ .|+++++++.+++.|++|+.||||| +|+++|+++ +.++++.+.+++.|..
T Consensus 214 ~~nD~-e~~~~~l---~p~l~~v~~~~~~~Galg~~lSGSG--ptv~al~~~~~~a~~i~~~l~~~~~~ 276 (287)
T PRK14616 214 FENDF-ESAVFDH---YPAVRKVKDDLLEAGSFFASLSGSG--SAVFGLFENEADAEAAAEMMRARYRT 276 (287)
T ss_pred hcCcc-HHHHHHh---ChHHHHHHHHHHhCCCCeEEEeccc--ccceEEeCCHHHHHHHHHHhHHhCcc
Confidence 66655 5666543 6999999999999999999999999 899999987 5678888888887743
No 30
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.66 E-value=3.9e-15 Score=139.42 Aligned_cols=76 Identities=26% Similarity=0.206 Sum_probs=58.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-------------------------eeeeeccCCcEEEe
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-------------------------AISIMAKSGFAELI 67 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-------------------------~as~~g~~g~~l~i 67 (338)
.||++.+.++||.++||+||||+.+|++.|++.+++.++++ +++++| .+++.
T Consensus 63 ~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~g---G~~~~ 139 (261)
T TIGR01920 63 DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLG---GIVIT 139 (261)
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhC---CEEEE
Confidence 48999999999999999999999999999999999998776 245665 36777
Q ss_pred ecCCCceE-EeeCCCCceEEEEecCC
Q 019635 68 DFNPIRTT-DVQLPAGGTFVVAHSLA 92 (338)
Q Consensus 68 d~~~~~~~-~v~lp~~~~~vv~~s~v 92 (338)
+.++.... ..++| +..++++++..
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 140 DNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred eCCCceEEEecCCC-CceEEEEECCC
Confidence 77665433 34433 35677777765
No 31
>PRK01123 shikimate kinase; Provisional
Probab=99.66 E-value=6.4e-15 Score=139.40 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=57.6
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-------------------------eeeeeccCCcEEEee
Q 019635 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-------------------------AISIMAKSGFAELID 68 (338)
Q Consensus 14 gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-------------------------~as~~g~~g~~l~id 68 (338)
||++.+.++||.++||+||||..+|++.|++.+++.++++ +++++| | +++.+
T Consensus 75 ~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~G--G-~~~~~ 151 (282)
T PRK01123 75 GATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFG--G-VTVTD 151 (282)
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhC--C-EEEEc
Confidence 7999999999999999999999999999999999988765 355565 3 55556
Q ss_pred cCCC-ceEEeeCCCCceEEEEecCC
Q 019635 69 FNPI-RTTDVQLPAGGTFVVAHSLA 92 (338)
Q Consensus 69 ~~~~-~~~~v~lp~~~~~vv~~s~v 92 (338)
.... ....++ .++.|+++.++.
T Consensus 152 ~~~~~~~~~~~--~~~~~vv~~p~~ 174 (282)
T PRK01123 152 NREMKLLKRDE--VELDVLVLIPPE 174 (282)
T ss_pred CCCceEEEEec--CCcEEEEEECCC
Confidence 4432 223333 358899999886
No 32
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.64 E-value=4.7e-15 Score=141.36 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=126.8
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------eeeeeccCCcEEEeecCCCceEEeeCC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------AISIMAKSGFAELIDFNPIRTTDVQLP 80 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------~as~~g~~g~~l~id~~~~~~~~v~lp 80 (338)
.|+++.|.++||.++||+||||-.++++.+++..+++.... .+.+++ |...+.+-..-..+++++|
T Consensus 92 ~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l~~~e~L~~lA~~lGaDvP~~l~--G~~a~~~g~Ge~~~~l~~~ 169 (297)
T PRK14613 92 PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNFFTSDEMQVFAKEIGSDVPFFLG--EGHAFVTGKGEIMEEIEVH 169 (297)
T ss_pred CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhCCccchhhc--CCeEEEecCCcEEEEcCCC
Confidence 47999999999999999999999877777777765553211 566666 3455556555567777776
Q ss_pred CCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCChHHHHH
Q 019635 81 AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVK 160 (338)
Q Consensus 81 ~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
+.+. +++.+++. ..| ..|.+.|.+.+. ...
T Consensus 170 ~~~~-vlv~P~~~---vsT------------~~a~~~l~~~~~------------~~~---------------------- 199 (297)
T PRK14613 170 KGQG-ILALTPQV---MNT------------GEMYALLKKPLQ------------ESA---------------------- 199 (297)
T ss_pred CCeE-EEEECCCC---cCh------------HHHHHhcchhhc------------ccc----------------------
Confidence 6654 67778763 334 234443433210 000
Q ss_pred HhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 019635 161 EFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 240 (338)
Q Consensus 161 ~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg~l 240 (338)
.+. . . +.+...++.+|.++ |++.+...
T Consensus 200 --------------------~~~-------------------~-------~--~~~~~~~~~al~~~-----~~~~l~~~ 226 (297)
T PRK14613 200 --------------------SQK-------------------N-------G--NTLSEDLISSLKVG-----DWVSLQGR 226 (297)
T ss_pred --------------------ccc-------------------c-------c--cccHHHHHHHHHcC-----CHHHHHHH
Confidence 000 0 0 11233467778787 78888655
Q ss_pred H-HhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC-CchHHHHHHHHHHHHhcc
Q 019635 241 M-NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQSR 309 (338)
Q Consensus 241 m-~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~-~~~~~~~~~l~~~y~~~~ 309 (338)
| |+. +.++... +|+++++++.+++.|++|++||||| +|+++|+++ +.++++.+.+++.|.+..
T Consensus 227 l~ndl-e~~~~~l---~P~~~~i~~~~~~~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~~~l~~~~~~~~ 291 (297)
T PRK14613 227 LENDF-EPVAFQL---HPELGVLKDKFLEFGSSYCSLTGSG--SSMYGLVQGLEIQEELLPRLRQEFSNLT 291 (297)
T ss_pred hcccc-hHHHHHh---CcHHHHHHHHHHHcCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHHhhccce
Confidence 4 555 6666543 7999999999999999999999998 999999987 567888888887775543
No 33
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.62 E-value=2e-14 Score=136.79 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=59.8
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.||++.|.++||.|+|||||||..+|++.|++.+++.++++ ..+++| | ..+..-..-...+++
T Consensus 85 ~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~Dv~~~~~g--g-~~~~~g~ge~~~~l~ 161 (293)
T TIGR00154 85 DGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGADVPFFVSG--H-AAFATGVGEIITPFE 161 (293)
T ss_pred CCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEEEC--C-eEEEEecCcEEEECC
Confidence 48999999999999999999999999999999999998776 444454 2 333332223345665
Q ss_pred CCCCceEEEEecCCc
Q 019635 79 LPAGGTFVVAHSLAE 93 (338)
Q Consensus 79 lp~~~~~vv~~s~v~ 93 (338)
.++++.++++++++.
T Consensus 162 ~~~~~~~vl~~p~~~ 176 (293)
T TIGR00154 162 DPPEKWVVIAKPHVS 176 (293)
T ss_pred CCCCcEEEEEcCCCC
Confidence 556778999999873
No 34
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.61 E-value=7.6e-15 Score=138.48 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=113.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------eeeeeccCCcEEEeecCCCceEEeeCCC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------AISIMAKSGFAELIDFNPIRTTDVQLPA 81 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------~as~~g~~g~~l~id~~~~~~~~v~lp~ 81 (338)
.|+++.|.++||+++|||||||..+|++.+++++++.+++. ..+++| |. .+..-..-...+++.|
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~l~~ia~~~g~dv~~~~~G--G~-~~~~g~g~~~~~l~~~- 157 (276)
T PRK14612 82 GGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVDLPALALTLGADVPFFLLG--GA-AEARGVGERLTPLELP- 157 (276)
T ss_pred CCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChHHHHHHHHhCCCcCeeeeC--Ce-EEEEecCccceEcCCC-
Confidence 47999999999999999999999999999999999987654 444454 33 3332222345666543
Q ss_pred CceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHH-HHhCCCchhhhcccccccchhhhhhhhhccCCCCChHHHHH
Q 019635 82 GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA-IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVK 160 (338)
Q Consensus 82 ~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~-~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
++.++++.+++.. .| ..+.+.|. .++ .
T Consensus 158 ~~~~vv~~P~~~~---sT------------~~a~~~l~~~~~--------------~----------------------- 185 (276)
T PRK14612 158 PVPLVLVNPGVAV---SA------------RDAYRWLEPEDF--------------G----------------------- 185 (276)
T ss_pred CcEEEEECCCCCC---CH------------HHHHHhhccccC--------------C-----------------------
Confidence 6889999998742 33 22232221 100 0
Q ss_pred HhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 019635 161 EFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 240 (338)
Q Consensus 161 ~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg~l 240 (338)
. ..|+..++.+|.++ |...+
T Consensus 186 ------------------------------------------~----------~~~~~~l~~~l~~~-----d~~~~--- 205 (276)
T PRK14612 186 ------------------------------------------P----------ELDVEAILAALARG-----EEPPY--- 205 (276)
T ss_pred ------------------------------------------C----------cccHHHHHHHHHhc-----ccccc---
Confidence 0 01234444555554 32211
Q ss_pred HHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCC-chHHHHHHHHHHH
Q 019635 241 MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQF 305 (338)
Q Consensus 241 m~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~-~~~~~~~~l~~~y 305 (338)
.|+ .+..|. ..+|+++++++.+++.|++|++|||+| +|+++|++++ .++++.+.+++.+
T Consensus 206 ~n~-l~~~~~---~~~p~l~~i~~~l~~~Ga~~~~lSGsG--ptvfal~~~~~~a~~~~~~l~~~~ 265 (276)
T PRK14612 206 WNS-LEGPVF---ARHPELQEVLAALRAAGLRGVLMSGSG--STCFGLAEDAAQAQRAAAALRARH 265 (276)
T ss_pred cCC-cHHHHH---HhChHHHHHHHHHHhCCCCEEEEcCcc--hhhEEEeCCHHHHHHHHHHhHhhC
Confidence 122 134453 247999999999999999999999999 8999999764 4677777776644
No 35
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.58 E-value=9.4e-14 Score=130.98 Aligned_cols=161 Identities=13% Similarity=0.107 Sum_probs=111.2
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-------------ee-eeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-------------AI-SIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-------------~a-s~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.||++.+.++||+++||+||||..+|++.|++.+++.++++ .+ +++| ...+.....-...+++
T Consensus 79 ~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~D~~~~~~G---g~~~~~~~g~~~~~~~ 155 (275)
T PRK14611 79 INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISADAPFFLKG---GFALGRGIGDKLEFLE 155 (275)
T ss_pred CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCeeecC---CeEEEeccCceeEECC
Confidence 37999999999999999999999999999999999998776 22 3454 3444554444456666
Q ss_pred CCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCChHHH
Q 019635 79 LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFA 158 (338)
Q Consensus 79 lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (338)
.+.+..+++++++++ ..| ..+.+.+.+++
T Consensus 156 ~~~~~~~vv~~p~~~---~sT------------~~~~~~l~~~~------------------------------------ 184 (275)
T PRK14611 156 KPISREITLVYPNIK---SST------------GRVYSKVTKQI------------------------------------ 184 (275)
T ss_pred cCCCcEEEEEeCCCC---CCh------------HHHHHhcchhh------------------------------------
Confidence 555677999999884 233 12222121110
Q ss_pred HHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 019635 159 VKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLG 238 (338)
Q Consensus 159 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg 238 (338)
.....+...+++++.++ |++.++
T Consensus 185 ----------------------------------------------------~~~~~~~~~l~~~l~~~-----~~~~~~ 207 (275)
T PRK14611 185 ----------------------------------------------------LTNKEDLNIIISLLREG-----EEKKIE 207 (275)
T ss_pred ----------------------------------------------------ccCcchHHHHHHHHHcC-----CHHHHH
Confidence 00012223345566666 687777
Q ss_pred HHH-HhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC
Q 019635 239 DLM-NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE 291 (338)
Q Consensus 239 ~lm-~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~ 291 (338)
..| |+-|+++... .|++..+.+...+.| +|+.||||| +++++++++
T Consensus 208 ~~~~n~l~~~~~~~----~P~l~~~~~~l~~~~-~~~~~SGSG--~tvf~l~~~ 254 (275)
T PRK14611 208 EVIENTLGEIALEL----YPEIKEVYRFLEYLG-YKPFVSGSG--SSVYVFGKP 254 (275)
T ss_pred HhcCCcccHHHHHH----CHHHHHHHHHHHhCC-CCEEEeCcc--ccceeEeCC
Confidence 664 4567888766 499999998766666 599999999 999999843
No 36
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.58 E-value=4.5e-14 Score=133.50 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=59.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.|+++.|.++||.++||+||||..+|++.|++.+++.++++ ..+++| + ..+..-..-..++++
T Consensus 84 ~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~Dv~~~l~g--g-~~~~~g~ge~~~~l~ 160 (280)
T PRK14614 84 VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGADVPFFIFK--K-TALAEGIGDKLTAVE 160 (280)
T ss_pred CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceeeeC--C-cEEEEEcCceeEECC
Confidence 37999999999999999999999999999999999998876 233344 2 222332333456666
Q ss_pred CCCCceEEEEecCCc
Q 019635 79 LPAGGTFVVAHSLAE 93 (338)
Q Consensus 79 lp~~~~~vv~~s~v~ 93 (338)
.+++..++++++++.
T Consensus 161 ~~~~~~ivl~~p~~~ 175 (280)
T PRK14614 161 GVPPLWVVLVNPGLH 175 (280)
T ss_pred CCCCcEEEEECCCCC
Confidence 656788999999874
No 37
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.57 E-value=6.4e-14 Score=133.50 Aligned_cols=80 Identities=14% Similarity=-0.058 Sum_probs=57.1
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----eeeeecc-------CCcEEEeecCCCceEEeeC-
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----AISIMAK-------SGFAELIDFNPIRTTDVQL- 79 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----~as~~g~-------~g~~l~id~~~~~~~~v~l- 79 (338)
.||++.|.++||+++|||||||..+|++.+++.+++.+++. .+.-+|. .+.+ +.--.-...+++++
T Consensus 87 ~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaDvPffl~gg~a-~~~G~Ge~~~~l~~~ 165 (296)
T PRK14615 87 PPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVGADVPFFLHNVPC-RATGIGEILTPVALG 165 (296)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCeeeccCCCE-EEEeeEeEEEECCCC
Confidence 47999999999999999999999999999999999998876 2211211 0121 11111124566665
Q ss_pred CCCceEEEEecCCc
Q 019635 80 PAGGTFVVAHSLAE 93 (338)
Q Consensus 80 p~~~~~vv~~s~v~ 93 (338)
++++.++++++++.
T Consensus 166 ~~~~~~vl~~P~~~ 179 (296)
T PRK14615 166 LSGWTLVLVCPEVQ 179 (296)
T ss_pred CCCcEEEEECCCCC
Confidence 34677999999874
No 38
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.56 E-value=6.8e-14 Score=132.96 Aligned_cols=78 Identities=8% Similarity=-0.018 Sum_probs=60.1
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.|+++.+.++||+|+|||||||..+|++.+++.+++.++++ ..+++| | ..+..-..-..++++
T Consensus 89 ~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~dv~~~l~g--g-~~~~~g~g~~~~~l~ 165 (290)
T PRK14608 89 PPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGADVPVCLDS--R-PLIMRGIGEELTPLP 165 (290)
T ss_pred CceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchhhcC--C-eEEEEecCCEeEECC
Confidence 47899999999999999999999999999999999998876 344454 2 333333333456665
Q ss_pred CCCCceEEEEecCCc
Q 019635 79 LPAGGTFVVAHSLAE 93 (338)
Q Consensus 79 lp~~~~~vv~~s~v~ 93 (338)
.++++.+++++++.+
T Consensus 166 ~~~~~~~vv~~p~~~ 180 (290)
T PRK14608 166 GLPSLPAVLVNPGVP 180 (290)
T ss_pred CCCCcEEEEECCCCC
Confidence 445788999999874
No 39
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.52 E-value=1.4e-12 Score=130.13 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhhHHHHhhhc-----CCCCHHHHHHHHHHHh-CCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHH
Q 019635 233 KLKKLGDLMNDSHHSCSVLY-----ECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 233 d~~~lg~lm~~sh~slr~~~-----~vs~peld~l~e~a~~-~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
|+..+...|.++.+.||+.- .|-+|++-+|++.+.+ .|++|++.+|||+|.|+++|+..+. +..+.+.+.|.
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~ 430 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWS 430 (454)
T ss_pred cHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHh
Confidence 46667777776666666542 3448999999999988 5999999999999999999986643 25566666665
Q ss_pred hcc
Q 019635 307 QSR 309 (338)
Q Consensus 307 ~~~ 309 (338)
+.+
T Consensus 431 ~~~ 433 (454)
T TIGR01219 431 SHN 433 (454)
T ss_pred hCC
Confidence 443
No 40
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.48 E-value=9.2e-14 Score=107.33 Aligned_cols=82 Identities=32% Similarity=0.533 Sum_probs=69.7
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhhHHH-HhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC-CchHHH
Q 019635 220 FKDTVSSNLSEEDKLKKLGDLMNDSHHS-CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQF 297 (338)
Q Consensus 220 ~~~aL~~~~~~~~d~~~lg~lm~~sh~s-lr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~-~~~~~~ 297 (338)
+++||.++ |++.|+++|+++|.. ......+.+|+++.+++.+++.|++|++|||+|||||+++|+++ +.++++
T Consensus 1 m~~al~~~-----d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v 75 (85)
T PF08544_consen 1 MIKALAEG-----DLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERV 75 (85)
T ss_dssp HHHHHHTT-----CHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHH
T ss_pred CHHHHHCc-----CHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHH
Confidence 46788887 899999999998873 11123556899999999999999999999999999999999944 678999
Q ss_pred HHHHHHHHH
Q 019635 298 ILNLKEQFY 306 (338)
Q Consensus 298 ~~~l~~~y~ 306 (338)
.++|++.|.
T Consensus 76 ~~~l~~~~~ 84 (85)
T PF08544_consen 76 AEALREHYK 84 (85)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHhCC
Confidence 999988875
No 41
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.48 E-value=5.8e-13 Score=125.30 Aligned_cols=81 Identities=9% Similarity=0.001 Sum_probs=57.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----eeeeecc------CCcEEEeecCCCceEEeeCC-
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----AISIMAK------SGFAELIDFNPIRTTDVQLP- 80 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----~as~~g~------~g~~l~id~~~~~~~~v~lp- 80 (338)
.|+++.+.++||.++||+||||..+|++.|++.+++.++++ .+.-+|. .|...+..-..-...+++.+
T Consensus 81 ~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iGaDvpffl~g~~a~~~G~Ge~l~~l~~~~ 160 (269)
T PRK14609 81 PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLGADCAFFIRNKPVYATGIGDIFSPIDLSL 160 (269)
T ss_pred CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCceEEccCCCEEEEEeCCeeEECCCCC
Confidence 47999999999999999999999999999999999998776 1111111 01222222222345666543
Q ss_pred CCceEEEEecCCc
Q 019635 81 AGGTFVVAHSLAE 93 (338)
Q Consensus 81 ~~~~~vv~~s~v~ 93 (338)
+++.++++++++.
T Consensus 161 ~~~~~vlv~P~~~ 173 (269)
T PRK14609 161 SGYYIALVKPDIH 173 (269)
T ss_pred CCCEEEEECCCCC
Confidence 5678999999873
No 42
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.39 E-value=3.4e-12 Score=116.63 Aligned_cols=104 Identities=24% Similarity=0.307 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-hHHHHhhhcCCCCHHHHHHHHHHHhC---CCcEEEEeCCCCcceEEEE
Q 019635 213 EAKRVHAFKDTVSSNLSEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNN---GALGARLTGAGWGGCVVAL 288 (338)
Q Consensus 213 E~~rv~~~~~aL~~~~~~~~d~~~lg~lm~~-sh~slr~~~~vs~peld~l~e~a~~~---Ga~GarisGaG~GG~viaL 288 (338)
+..|...+..||-.+. .+..+...+|.+ -|+++|..+ +|.++.|...+... |.+|..+|||| ++++++
T Consensus 244 NlqrlA~LttAl~~~p---~n~~L~y~~m~DkvhqPyRa~L---IPGl~~il~~~~p~t~pGl~GiclSGAG--PT~lAl 315 (355)
T KOG1537|consen 244 NLQRLAALTTALLEGP---DNVMLGYALMSDKVHQPYRAPL---IPGLEAILKAALPATYPGLFGICLSGAG--PTALAL 315 (355)
T ss_pred cHHHHHHHHHHHhcCC---CchhhhhhhhhccccCcccccc---CccHHHHHHhhCcccCCceeeEEecCCC--CeeEEE
Confidence 4677778888887762 145666678887 589999876 89999999998875 99999999999 999999
Q ss_pred EcCCchHHHHHHHHHHHHhcccCCccccCCCCceeEEEeecC-Cceee
Q 019635 289 VKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPS-SGAAK 335 (338)
Q Consensus 289 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 335 (338)
.. +.-+++.++|.+.|.+.+ ++|.+-..+|. +||.+
T Consensus 316 at-enf~eI~~~mv~~F~K~G----------~kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 316 AT-ENFQEIGEKMVEAFWKVG----------HKCSVASLKPALDGAGV 352 (355)
T ss_pred ec-CcHHHHHHHHHHHHHhhC----------ceeeeEeeccccCCcce
Confidence 85 778889999999998876 68888888875 67654
No 43
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.32 E-value=5.5e-11 Score=112.05 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=59.0
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-------------eeeeeccCCcEEEeecCCCceEEeeC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-------------AISIMAKSGFAELIDFNPIRTTDVQL 79 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-------------~as~~g~~g~~l~id~~~~~~~~v~l 79 (338)
.|+++.|.++||.|+|||||||..+|++.|++++++.++++ .+.+++. ...+..-..-...+++.
T Consensus 86 ~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~igaDvp~~l~g--~~~~~~g~g~~~~~l~~ 163 (271)
T PRK00343 86 LGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLGADVPVFVRG--HAAFAEGIGEILTPVDL 163 (271)
T ss_pred CCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCceEEecC--CcEEEEecCCEEEECCC
Confidence 37999999999999999999999999999999999998876 4455542 33344433334566665
Q ss_pred CCCceEEEEecCCc
Q 019635 80 PAGGTFVVAHSLAE 93 (338)
Q Consensus 80 p~~~~~vv~~s~v~ 93 (338)
| ...+++++++++
T Consensus 164 ~-~~~~vl~~p~~~ 176 (271)
T PRK00343 164 P-EKWYLVVKPGVH 176 (271)
T ss_pred C-CcEEEEEeCCCC
Confidence 4 355788888873
No 44
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.25 E-value=9.8e-10 Score=105.15 Aligned_cols=188 Identities=13% Similarity=0.161 Sum_probs=118.6
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeec----CCCceE
Q 019635 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDF----NPIRTT 75 (338)
Q Consensus 14 gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~----~~~~~~ 75 (338)
+|.+.+.++||.++||+||||..+|++.|++.+++.++++ +.|++| |.+ .++. .+....
T Consensus 85 ~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsGsa~~s~~G--G~v-~~~~g~~~~~s~a~ 161 (305)
T TIGR01240 85 KLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSACRSLFG--GYV-AWEKGKDDHSSAAV 161 (305)
T ss_pred ceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCeeeeeec--CeE-EEEcCCCCCCeeEE
Confidence 6899999999999999999999999999999999998876 667887 444 4443 334556
Q ss_pred EeeCCCC---ce-EEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCC
Q 019635 76 DVQLPAG---GT-FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNG 151 (338)
Q Consensus 76 ~v~lp~~---~~-~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~ 151 (338)
+++.|.. ++ ++++.+..+ |.... ...+...+.+. .
T Consensus 162 ~i~~~~~~~~~~~~v~vv~~~~--k~vsS----------t~gm~~~~~ts------------~----------------- 200 (305)
T TIGR01240 162 QVADDSDWPQXAMCVLVVNDIK--KDVSS----------RQGMQLTVATS------------E----------------- 200 (305)
T ss_pred ECCCccccccceEEEEEcCCCC--CCCCC----------HHHHHHhhhcC------------c-----------------
Confidence 6665533 33 333333332 21100 01111112110 0
Q ss_pred CCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 019635 152 SSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 231 (338)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~ 231 (338)
....|+.++ ..++..+++++.++
T Consensus 201 --------------------------------------------------~~~~~v~~~---~~~l~~~~~ai~~~---- 223 (305)
T TIGR01240 201 --------------------------------------------------LFKEWIEHV---VPDFEVXRKAIKTK---- 223 (305)
T ss_pred --------------------------------------------------cHHHHHHHH---HHHHHHHHHHHHhc----
Confidence 022233331 13578889999998
Q ss_pred hhHHHHHHHHHhh----HHHHhhhc-C--CCCHHHHHHHHHH---HhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHH
Q 019635 232 DKLKKLGDLMNDS----HHSCSVLY-E--CSCPELEELVNVC---RNNGALGARLTGAGWGGCVVALVKESIDSQFILNL 301 (338)
Q Consensus 232 ~d~~~lg~lm~~s----h~slr~~~-~--vs~peld~l~e~a---~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l 301 (338)
|++.||++...+ |..+..-+ . .-.|+.-++++.. ++.|.-.....-|| +-+..|+++++.+++.+.+
T Consensus 224 -D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAG--pNv~vl~~~~~~~~v~~~~ 300 (305)
T TIGR01240 224 -DFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAG--PNVKVLYLAENLSKLFEFI 300 (305)
T ss_pred -cHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCC--CCEEEEEccccHHHHHHHH
Confidence 899999977754 43333210 0 1145544555444 44576667788889 7799999899999998888
Q ss_pred HHHH
Q 019635 302 KEQF 305 (338)
Q Consensus 302 ~~~y 305 (338)
.+.|
T Consensus 301 ~~~~ 304 (305)
T TIGR01240 301 YKLF 304 (305)
T ss_pred HHhc
Confidence 7654
No 45
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.25 E-value=2.6e-09 Score=99.48 Aligned_cols=209 Identities=18% Similarity=0.254 Sum_probs=142.4
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------eeeeeccCCcEEEee------c
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------AISIMAKSGFAELID------F 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------~as~~g~~g~~l~id------~ 69 (338)
.|+.+.|.+++|...||+|-..+..|++.|++++++++++- ++--+| |+ .+| |
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG~tSgiGv~afe~G--GF--IVDGGh~~~f 145 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRGGTSGIGVYAFEYG--GF--IVDGGHSFGF 145 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccCCccceeEEEEEEC--CE--EEECCcccCc
Confidence 57999999999999999999999999999999999998764 222233 22 233 2
Q ss_pred CC--Cc--eEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhh
Q 019635 70 NP--IR--TTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVA 145 (338)
Q Consensus 70 ~~--~~--~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~ 145 (338)
.| .. +-...+|++|.|+++-+.++ +.. +. +....++++. ..++
T Consensus 146 ~ps~~sP~I~R~dfPedW~~VlaIP~~~--rg~-----~~------~~E~~if~~~------------~p~p-------- 192 (312)
T COG1907 146 LPSSASPLIFRLDFPEDWRFVLAIPEVE--RGV-----SG------RREVDIFKKY------------CPVP-------- 192 (312)
T ss_pred ccCCCCceeeeecCCCceEEEEEecCCC--ccc-----cc------hHHHHHHHhc------------CCCC--------
Confidence 22 22 56677899999999998874 111 11 1222333331 1110
Q ss_pred hhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 019635 146 FACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS 225 (338)
Q Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~ 225 (338)
.+ .-+++.|++ .-.++-|+.
T Consensus 193 ------------------------~~-------------------------------~~~~ls~~v-----Lm~mmPavv 212 (312)
T COG1907 193 ------------------------LE-------------------------------EVGELSHRV-----LMKMMPAVV 212 (312)
T ss_pred ------------------------HH-------------------------------HHHHHHHHH-----HHHHhHHHH
Confidence 01 111222221 124555666
Q ss_pred cCCCChhhHHHHHHHHHhhHHHH---hhhc--CCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHH
Q 019635 226 SNLSEEDKLKKLGDLMNDSHHSC---SVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 300 (338)
Q Consensus 226 ~~~~~~~d~~~lg~lm~~sh~sl---r~~~--~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~ 300 (338)
.+ |++.||+.|++-|... .+.. ..-++.+..+++.+.++ ++|+-+| -||+++++++++.....+...
T Consensus 213 E~-----Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~d~~~~~~~~~~ 284 (312)
T COG1907 213 ER-----DIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIVDSREAGSVVRK 284 (312)
T ss_pred hh-----CHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEeccccccchHHHH
Confidence 65 8999999999988765 3332 34488899999999998 7888885 577999999988766666666
Q ss_pred HHHHHHhcccCCccccCCCCceeEEEeecC-Cceeee
Q 019635 301 LKEQFYQSRIDRGVINNNDLGLYVFASKPS-SGAAKF 336 (338)
Q Consensus 301 l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~ 336 (338)
+.+.+.+.+ ....+++++|. .||.+.
T Consensus 285 ~~~~~~~~g----------~~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 285 LIDILLEEG----------IGGEVFVTKARNRGAEIL 311 (312)
T ss_pred HHHHHHhcC----------CceEEEEeccCCCCceec
Confidence 666666554 56789999996 599764
No 46
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.17 E-value=2.3e-09 Score=98.86 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=59.2
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-------------------------eeeeeccCCcEEEee
Q 019635 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-------------------------AISIMAKSGFAELID 68 (338)
Q Consensus 14 gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-------------------------~as~~g~~g~~l~id 68 (338)
|+++.|+|+||.++||.||||+..|++.|+..+.|.++++ ++|++|. ..+.|
T Consensus 70 ~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG---~~iTD 146 (278)
T COG1685 70 GVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGG---IVITD 146 (278)
T ss_pred ceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHhCC---eEEec
Confidence 6899999999999999999999999999999999987765 7888963 77778
Q ss_pred cCCCceEEe-eCCCCceEEEEecCC
Q 019635 69 FNPIRTTDV-QLPAGGTFVVAHSLA 92 (338)
Q Consensus 69 ~~~~~~~~v-~lp~~~~~vv~~s~v 92 (338)
-+..++... +.|+ ...+|.-++.
T Consensus 147 N~~m~Ilrr~~~~~-~~vlI~~p~~ 170 (278)
T COG1685 147 NRKMRILRRLDLPE-LTVLILAPGE 170 (278)
T ss_pred chhheehhccccCC-ceEEEEecCC
Confidence 777654333 4554 5555555554
No 47
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.15 E-value=8.8e-10 Score=104.39 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=59.0
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-------------eeeeeccCCcEEEeecCCCceEEeeCC
Q 019635 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-------------AISIMAKSGFAELIDFNPIRTTDVQLP 80 (338)
Q Consensus 14 gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-------------~as~~g~~g~~l~id~~~~~~~~v~lp 80 (338)
|+++.+.++||+++||+||||-.+|++.+++++++.++++ .+.+++. |.++ ..-..-.+++++.+
T Consensus 80 ~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGaDvPffl~~-g~a~-~~G~Ge~l~~~~~~ 157 (288)
T PRK00650 80 PVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGMDTPFFFST-GSAL-GVGRGEKIIALEES 157 (288)
T ss_pred CeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCcchhhhcC-ceEE-EEecCCEEEECcCC
Confidence 7899999999999999999999999999999999998876 4445542 3322 22222355666665
Q ss_pred CCceEEEEecCC
Q 019635 81 AGGTFVVAHSLA 92 (338)
Q Consensus 81 ~~~~~vv~~s~v 92 (338)
++..++++.+.+
T Consensus 158 ~~~~~vlv~P~~ 169 (288)
T PRK00650 158 VSDRYVLYFSSE 169 (288)
T ss_pred CCceEEEEeCCC
Confidence 667788888876
No 48
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.07 E-value=4.2e-09 Score=99.83 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=35.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVE 50 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ 50 (338)
.|+++.|.++||.++|||||||-.+|++.+++++++++
T Consensus 83 ~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~ls 120 (283)
T PRK14610 83 TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWGID 120 (283)
T ss_pred CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhCCC
Confidence 37999999999999999999999999999999999754
No 49
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=98.80 E-value=8.8e-08 Score=90.34 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=57.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----eeeeecc------CCcEEEeecCCCceEEeeCCC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----AISIMAK------SGFAELIDFNPIRTTDVQLPA 81 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----~as~~g~------~g~~l~id~~~~~~~~v~lp~ 81 (338)
.|++|.|.++||+|+||+.=||=..|++.+|+++++..++. .++-+|. .|+..+..-.-=+.++++=++
T Consensus 84 ~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDVPffl~g~tA~a~G~GE~l~~~~~~~ 163 (289)
T COG1947 84 GGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLGADVPFFLSGGTAFAEGRGEKLEPLEDPP 163 (289)
T ss_pred CCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcCeeeeCCceEEEEccceeeECCCCC
Confidence 47999999999999999999999999999999999998876 1222221 022223332223567777445
Q ss_pred CceEEEEecCCc
Q 019635 82 GGTFVVAHSLAE 93 (338)
Q Consensus 82 ~~~~vv~~s~v~ 93 (338)
...++++++++.
T Consensus 164 ~~~~vl~~P~v~ 175 (289)
T COG1947 164 EKWYVLAKPGVG 175 (289)
T ss_pred CceEEEEeCCCC
Confidence 667788888763
No 50
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.65 E-value=4.1e-06 Score=80.85 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhh----HHHHhhhc-CCC--CHHHHHHHHHH---Hh-CCC-c
Q 019635 205 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS----HHSCSVLY-ECS--CPELEELVNVC---RN-NGA-L 272 (338)
Q Consensus 205 ~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg~lm~~s----h~slr~~~-~vs--~peld~l~e~a---~~-~Ga-~ 272 (338)
.|+.+++. .+..++.+|++++ |++.||++...+ |..+-+-+ .+. .|+--.+++.. ++ .|. .
T Consensus 227 ~w~~~~~~--~~~~~~~~Ai~~~-----Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~ 299 (343)
T PLN02407 227 HRAKEVVP--KRILQMEEAIKNR-----DFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQ 299 (343)
T ss_pred HHHHhhhH--HHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCcc
Confidence 34444333 6777888899998 899999987653 43332211 011 44443444443 33 364 4
Q ss_pred EEEEeCCCCcceEEEEEcCCchHH-HHHHHHHHHH
Q 019635 273 GARLTGAGWGGCVVALVKESIDSQ-FILNLKEQFY 306 (338)
Q Consensus 273 GarisGaG~GG~viaL~~~~~~~~-~~~~l~~~y~ 306 (338)
.+.-.-|| +-+..|+.+++.++ +++.+.+.|.
T Consensus 300 v~yT~DAG--PNv~vl~~~~~~~~~v~~~~~~~~~ 332 (343)
T PLN02407 300 VAYTFDAG--PNAVLIALNRKVAAQLLQRLLYYFP 332 (343)
T ss_pred EEEEecCC--CCEEEEEChhhhHHHHHHHHHHhcC
Confidence 56777899 67888888877775 8877777653
No 51
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=98.61 E-value=7.4e-08 Score=71.42 Aligned_cols=38 Identities=32% Similarity=0.348 Sum_probs=36.1
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc
Q 019635 16 NHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK 53 (338)
Q Consensus 16 ~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~ 53 (338)
++.|.++||.++|||||||+++|++.+++++++.++++
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~ 38 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSK 38 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBH
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccH
Confidence 58899999999999999999999999999999998876
No 52
>PRK05905 hypothetical protein; Provisional
Probab=98.51 E-value=8.5e-07 Score=82.96 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=54.5
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc---eeeeeccCCcEEEeec-CC-------CceEEeeCCC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK---AISIMAKSGFAELIDF-NP-------IRTTDVQLPA 81 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~---~as~~g~~g~~l~id~-~~-------~~~~~v~lp~ 81 (338)
.|+++.+.++||.++||+|+||=.+|+..+++++++++... .+.-+|. +--.++.- .+ -..++++.|.
T Consensus 85 ~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~ls~~~L~~ia~~lGA-DVPFfl~g~~~a~~~G~GE~l~pl~~~~ 163 (258)
T PRK05905 85 NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEGINEINYKDVVNKLGS-DIPFFLSGYKTAYISDYGSQVEDLIGQF 163 (258)
T ss_pred CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHhCC-CcceEEeCCccEEEEeeCceeEECCCCC
Confidence 47899999999999999999999999999999999864222 2222221 22222221 22 2567776554
Q ss_pred CceEEEEecCC
Q 019635 82 GGTFVVAHSLA 92 (338)
Q Consensus 82 ~~~~vv~~s~v 92 (338)
+..++++++++
T Consensus 164 ~~~~vlv~P~~ 174 (258)
T PRK05905 164 KLTYKVIFMNV 174 (258)
T ss_pred CceEEEECCCC
Confidence 56688888877
No 53
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.40 E-value=6.9e-07 Score=83.63 Aligned_cols=79 Identities=9% Similarity=-0.048 Sum_probs=55.6
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----eeeeeccCCcEEEeec-CC-------CceEEeeC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----AISIMAKSGFAELIDF-NP-------IRTTDVQL 79 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----~as~~g~~g~~l~id~-~~-------~~~~~v~l 79 (338)
.|+++.+.++||.++||+||||-.+|++.+++++++.++++ .+.-+|. +--.++.- .+ -..++++.
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGa-DvPffl~~~~~a~~~G~Ge~l~~l~~ 163 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGA-DVAFFISGYKSANVSGIGEIVEEFEE 163 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CccEEecCCceEEEEeeCCeeEECCC
Confidence 48999999999999999999999999999999999998876 2222332 22222222 22 24566643
Q ss_pred CCCceEEEEecCCc
Q 019635 80 PAGGTFVVAHSLAE 93 (338)
Q Consensus 80 p~~~~~vv~~s~v~ 93 (338)
+.. .++++++++.
T Consensus 164 ~~~-~~~lv~P~~~ 176 (257)
T PRK04181 164 EIL-NLEIFTPNIF 176 (257)
T ss_pred CCC-eEEEECCCCC
Confidence 222 3888888763
No 54
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.34 E-value=7.6e-05 Score=71.68 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=55.5
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCC------Cc
Q 019635 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNP------IR 73 (338)
Q Consensus 14 gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~------~~ 73 (338)
.|.+...++.|.++||+||||-..|++.|++.++++.+|. .-|++| |. .+.+--+ ..
T Consensus 90 ~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS~~G--g~-~~W~~~~g~~~~~~~ 166 (329)
T COG3407 90 KVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGSASRSIFG--GF-VLWEKGEGEDSAAEQ 166 (329)
T ss_pred eEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhccchhhhhcC--Ce-eEeccCCCCccceee
Confidence 4789999999999999999999999999999999998776 446776 34 5555444 13
Q ss_pred eEEeeCCC--CceEEEEecCC
Q 019635 74 TTDVQLPA--GGTFVVAHSLA 92 (338)
Q Consensus 74 ~~~v~lp~--~~~~vv~~s~v 92 (338)
..++.+++ ..-++++....
T Consensus 167 ~~~~~~~~e~~~i~~~~~~~~ 187 (329)
T COG3407 167 LFRLDLWKELAMIVLVISPKK 187 (329)
T ss_pred eccccCccccceEEEEEcccc
Confidence 44555553 34555555544
No 55
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.32 E-value=1.8e-05 Score=72.78 Aligned_cols=77 Identities=19% Similarity=0.138 Sum_probs=59.8
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-------------eeeeeccCCcEEEeecCCCceEE-ee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-------------AISIMAKSGFAELIDFNPIRTTD-VQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-------------~as~~g~~g~~l~id~~~~~~~~-v~ 78 (338)
.|.++.+.|+||.|.|+.||.|=.||++.|+.+.+|..+.. -..+| +.++++|.+..++.. ..
T Consensus 82 ~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPtDsiiF---~~~tlFd~r~g~~~~~~g 158 (293)
T COG4542 82 TGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPTDSIIF---DKATLFDQREGRVIEFLG 158 (293)
T ss_pred CCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCccceec---ccceeehhccchHHHhcC
Confidence 46889999999999999999999999999999999998765 23345 347888877754322 22
Q ss_pred CCCCceEEEEecCC
Q 019635 79 LPAGGTFVVAHSLA 92 (338)
Q Consensus 79 lp~~~~~vv~~s~v 92 (338)
=++.+.+++..++.
T Consensus 159 ~~PpL~ilv~e~~~ 172 (293)
T COG4542 159 EMPPLHILVFEGKG 172 (293)
T ss_pred CCCceEEEEEcCCC
Confidence 23568888888775
No 56
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=7.6e-05 Score=74.53 Aligned_cols=83 Identities=19% Similarity=0.323 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhhHHHHhhh-cCCCCHHHHHHHHHHHh--CCCcEEEEeCCCCcceEEEEEcC
Q 019635 215 KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRN--NGALGARLTGAGWGGCVVALVKE 291 (338)
Q Consensus 215 ~rv~~~~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~-~~vs~peld~l~e~a~~--~Ga~GarisGaG~GG~viaL~~~ 291 (338)
+.+.++.+.++++ .++.+|+.+...|+...-. -+|-.+...+|.+...- .|- -+-..|||+||+++.+.+.
T Consensus 835 ~~tdecAegf~kG-----sl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hge-sgw~AGAGGGGFiYLl~kE 908 (948)
T KOG4644|consen 835 EATDECAEGFEKG-----SLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHGE-SGWAAGAGGGGFIYLLIKE 908 (948)
T ss_pred HHHHHHHHHHhcC-----cHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhccccccc-cchhccCCCCcEEEEEecC
Confidence 4566777788888 7999999999887643211 14555666677665432 232 2357899999999999987
Q ss_pred CchHHHHHHHHH
Q 019635 292 SIDSQFILNLKE 303 (338)
Q Consensus 292 ~~~~~~~~~l~~ 303 (338)
.+..+.++++..
T Consensus 909 pqqkeaiEa~La 920 (948)
T KOG4644|consen 909 PQQKEAIEAFLA 920 (948)
T ss_pred CCCHHHHHHhhc
Confidence 776666666544
No 57
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=97.98 E-value=0.00059 Score=64.71 Aligned_cols=92 Identities=22% Similarity=0.361 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH-HHhh---HHHHhhhcCCCCHH------HHHHHHHHHh----
Q 019635 203 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL-MNDS---HHSCSVLYECSCPE------LEELVNVCRN---- 268 (338)
Q Consensus 203 ~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg~l-m~~s---h~slr~~~~vs~pe------ld~l~e~a~~---- 268 (338)
+..|+.+|+. .|..++.+++.+. |++.|.++ |.+| |.-+-+-| .|- =-+|++.+.+
T Consensus 224 ~qhRi~~vVP--~Ri~~m~eaI~~r-----DF~~FA~lTm~DSNqFHAvclDT~---PPI~YmNd~S~~iI~~vh~~N~~ 293 (395)
T KOG2833|consen 224 LQHRIESVVP--QRIQQMREAIRER-----DFESFAKLTMKDSNQFHAVCLDTF---PPIFYLNDTSWRIISLVHEFNAS 293 (395)
T ss_pred HHHHHHhhhH--HHHHHHHHHHHhc-----CHHHHHHHHHhcchhhhhhhhccC---CCeEEeccchHHHHHHHHHHHhc
Confidence 5678888887 8999999999998 89999885 4454 33322221 111 1245555554
Q ss_pred CC-CcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHH
Q 019635 269 NG-ALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 269 ~G-a~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
.| -..|..--||+..|++++ ++.+.++.+.+.+.|.
T Consensus 294 ~G~t~vAYTFDAGPNAvl~~l--~e~~~~~l~~~~~~f~ 330 (395)
T KOG2833|consen 294 AGGTRVAYTFDAGPNAVLIVL--EENVSQLLAAVLKVFP 330 (395)
T ss_pred cCCeeEEEEecCCCceEEEEh--hhhHHHHHHHHHHhcC
Confidence 33 335777889977777776 5666677777766553
No 58
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=96.97 E-value=0.016 Score=55.61 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHh-CCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHH
Q 019635 257 PELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 257 peld~l~e~a~~-~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
|..-.|.+-++. .|++++-+-|||+=..++++...+ -+..+.+.+.+.
T Consensus 383 ~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~d--vd~~~~~~~~w~ 431 (459)
T KOG4519|consen 383 ESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGD--VDSGTKLTQAWS 431 (459)
T ss_pred hhhhhHhhhhhcccceEEecccCCCCcceEEEEeecc--hhHHHHHHhhhc
Confidence 334456666666 599999999999777888887553 123344444443
No 59
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=96.48 E-value=0.18 Score=47.38 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.1
Q ss_pred HHHHhCCCcEEEEeCCCCcceEEEEEcCC
Q 019635 264 NVCRNNGALGARLTGAGWGGCVVALVKES 292 (338)
Q Consensus 264 e~a~~~Ga~GarisGaG~GG~viaL~~~~ 292 (338)
.+....|++++-+-|||+|..+++|.++.
T Consensus 279 ~i~~l~gvl~~lipgaGggdaif~l~~~~ 307 (337)
T COG3890 279 SIFDLLGVLCDLIPGAGGGDAIFLLYRPN 307 (337)
T ss_pred hHHhccCceEeecccCCCCceEEEEeccc
Confidence 34445799999999999999999998665
No 60
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=95.28 E-value=0.3 Score=45.89 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=57.5
Q ss_pred eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-------------------eeeeeccCCcEEEeecCC---C
Q 019635 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-------------------AISIMAKSGFAELIDFNP---I 72 (338)
Q Consensus 15 f~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-------------------~as~~g~~g~~l~id~~~---~ 72 (338)
..+.+.+++|.|.|.+=|+|...+.++|++..++.+.-. .+.++| |-++.+.--+ .
T Consensus 75 ~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~~~~a~~~AH~aEV~~gtGLGDVvAq~~G--GlViR~~pG~Pg~~ 152 (283)
T COG1829 75 VGVRIESPVPLGCGYGVSGAGALGTALALAEELGLGEESAARIAHVAEVENGTGLGDVVAQYTG--GLVIRVKPGGPGEG 152 (283)
T ss_pred cceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCCchHHHHHhcC--cEEEEecCCCCCeE
Confidence 568999999999999999999999999999999986211 566676 4444443332 3
Q ss_pred ceEEeeCCCCceEEEEecCCcc
Q 019635 73 RTTDVQLPAGGTFVVAHSLAES 94 (338)
Q Consensus 73 ~~~~v~lp~~~~~vv~~s~v~~ 94 (338)
.++.+|.|. +.++...-+.-+
T Consensus 153 ~vd~Ip~~~-~~V~~~~~g~l~ 173 (283)
T COG1829 153 EVDRIPVPG-LRVITISLGELS 173 (283)
T ss_pred EEEEeecCC-ceEEEEEccccc
Confidence 678888876 777777666543
No 61
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=74.55 E-value=8.7 Score=27.89 Aligned_cols=48 Identities=25% Similarity=0.207 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHH
Q 019635 254 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 303 (338)
Q Consensus 254 vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~ 303 (338)
++...+..|.+++++.|.--.|+|+.. +..+.-++.+..+++.+.|.+
T Consensus 21 i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 456778899999999998789999988 778887888999999988865
No 62
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=39.11 E-value=50 Score=34.72 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=62.3
Q ss_pred HHHHHhhhcCCCCHHHHHHHhch-----hhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHH---------HHHHHHHHHH
Q 019635 157 FAVKEFLRKEPYTALDIEKITEE-----KLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS---------EAKRVHAFKD 222 (338)
Q Consensus 157 ~~~~~~l~~~~~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~---------E~~rv~~~~~ 222 (338)
..|+.+|..++|+.+++-...-. ....++..+...++.+.....|+..+|+.|++. |..-+..++.
T Consensus 321 ~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~wt~ee~eeL~~l~~ 400 (607)
T KOG0051|consen 321 NFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKWTPEEEEELKKLVV 400 (607)
T ss_pred HHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCCCCcchHHHHHHHHH
Confidence 46777888889998888776532 234566777777888888888887779999988 2333333332
Q ss_pred HHhcCCCChhhHHHHHHHHHhhHHHHhhh
Q 019635 223 TVSSNLSEEDKLKKLGDLMNDSHHSCSVL 251 (338)
Q Consensus 223 aL~~~~~~~~d~~~lg~lm~~sh~slr~~ 251 (338)
+.+ ++|..+|++|..+-..+|+.
T Consensus 401 --~~g----~~W~~Ig~~lgr~P~~crd~ 423 (607)
T KOG0051|consen 401 --EHG----NDWKEIGKALGRMPMDCRDR 423 (607)
T ss_pred --Hhc----ccHHHHHHHHccCcHHHHHH
Confidence 222 27999999999877766654
No 63
>COG1356 tfx Transcriptional regulator [DNA replication, recombination and repair]
Probab=37.54 E-value=85 Score=26.35 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=35.4
Q ss_pred hhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 019635 163 LRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 226 (338)
Q Consensus 163 l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~ 226 (338)
|+++|++.+|+.+.++.+-... --+-+||+--+..+.++..++..|.+
T Consensus 19 lRekG~tQ~eIA~~L~TTraNv----------------SaIEkrA~enIekarnTL~l~~~i~s 66 (143)
T COG1356 19 LREKGLTQSEIARILKTTRANV----------------SAIEKRALENIEKARNTLLLWEQINS 66 (143)
T ss_pred hhhccccHHHHHHHHccchhhH----------------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5678999999999998643221 02667888888888888888877765
No 64
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=35.72 E-value=58 Score=31.51 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHH
Q 019635 255 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 302 (338)
Q Consensus 255 s~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~ 302 (338)
|.+.+..++++|.+.|.-..++|+-+ |..|-..+.++++++.+.|+
T Consensus 43 ~~e~Lr~i~diAekyG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 43 SAETLRKIADIAEKYGDGLIHITSRQ--GLEIPGISPEDADDVVEELR 88 (317)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecC--ceEeccCCHHHHHHHHHHHH
Confidence 34445555555665555455666555 44444444455555555554
No 65
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=31.31 E-value=1.2e+02 Score=28.48 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHH------------HHHHHHHHHHHhcCCCChhh
Q 019635 166 EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE------------AKRVHAFKDTVSSNLSEEDK 233 (338)
Q Consensus 166 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E------------~~rv~~~~~aL~~~~~~~~d 233 (338)
.+++.+|+.+.+|.+.... .....|++.-+.+ ..-+..+++|+.++ |
T Consensus 123 ~g~s~~EIA~~lg~s~~tV----------------r~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~a~~~g-----D 181 (281)
T TIGR02957 123 FDYPYEEIASIVGKSEANC----------------RQLVSRARRHLDARRPRFEVSREESRQLLERFVEAAQTG-----D 181 (281)
T ss_pred cCCCHHHHHHHHCCCHHHH----------------HHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHhC-----C
Confidence 3578889999888643321 1133334333322 23466788888887 8
Q ss_pred HHHHHHHHHhhH
Q 019635 234 LKKLGDLMNDSH 245 (338)
Q Consensus 234 ~~~lg~lm~~sh 245 (338)
++.|..+|.+.-
T Consensus 182 ~~~l~~lL~~dv 193 (281)
T TIGR02957 182 LDGLLELLAEDV 193 (281)
T ss_pred HHHHHHHHhhce
Confidence 888888888643
No 66
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=31.26 E-value=1.1e+02 Score=28.95 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=37.5
Q ss_pred CCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHH------------HHHHHHHHHHHhcCCCChhhH
Q 019635 167 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE------------AKRVHAFKDTVSSNLSEEDKL 234 (338)
Q Consensus 167 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E------------~~rv~~~~~aL~~~~~~~~d~ 234 (338)
+++.+|+.+.+|.+.... .....|++.-+.+ ..-+..+++|+.++ |+
T Consensus 134 g~s~~EIA~~Lgis~~tV----------------r~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~a~~~g-----d~ 192 (290)
T PRK09635 134 GLPYQQIATTIGSQASTC----------------RQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNG-----DL 192 (290)
T ss_pred CCCHHHHHHHHCcCHHHH----------------HHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHhC-----CH
Confidence 578899999988644321 1233344433332 34467888899998 89
Q ss_pred HHHHHHHHhh
Q 019635 235 KKLGDLMNDS 244 (338)
Q Consensus 235 ~~lg~lm~~s 244 (338)
+.|-.|+.+.
T Consensus 193 ~~l~~ll~~d 202 (290)
T PRK09635 193 DTLLEVLDPG 202 (290)
T ss_pred HHHHHHhhhh
Confidence 9999998754
No 67
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=25.17 E-value=1.8e+02 Score=27.34 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhh
Q 019635 216 RVHAFKDTVSSNLSEEDKLKKLGDLMNDS 244 (338)
Q Consensus 216 rv~~~~~aL~~~~~~~~d~~~lg~lm~~s 244 (338)
-+..+.+|+.++ |++.+..++.+.
T Consensus 176 ~v~~f~~A~~~g-----D~~~l~~Lla~D 199 (293)
T PRK09636 176 LVEAFFAALASG-----DLDALVALLAPD 199 (293)
T ss_pred HHHHHHHHHHhC-----CHHHHHHHHhhC
Confidence 366788888887 888888888864
No 68
>PF09182 PuR_N: Bacterial purine repressor, N-terminal; InterPro: IPR015265 The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1O57_B 1P4A_D.
Probab=22.26 E-value=3.4e+02 Score=20.31 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEE--EEeCCCCc
Q 019635 214 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGA--RLTGAGWG 282 (338)
Q Consensus 214 ~~rv~~~~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~Ga--risGaG~G 282 (338)
++|+..+..-|.++.+..-.+..|.+..+..-.+.. +.++-+.+...+.| +|- .++||++|
T Consensus 3 seRlv~it~~L~~~P~~lisL~~Fae~f~~AKSsIS-------EDl~iik~~~~~~g-~G~ieT~~GaaGG 65 (70)
T PF09182_consen 3 SERLVAITKYLLENPNKLISLTYFAERFGAAKSSIS-------EDLSIIKETFEKEG-LGRIETVPGAAGG 65 (70)
T ss_dssp HHHHHHHHHHHHTSTT--EEHHHHHHHHT--HHHHH-------HHHHHHHHHHHHTT-SEEEEEE-STT-E
T ss_pred hhHHHHHHHHHHcCCcceEcHHHHHHHhcccccchH-------HHHHHHHHHHHHcC-CceEEEecCCCCC
Confidence 456666666666653222235666666665554444 44566666666777 564 67787754
No 69
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=20.70 E-value=1.1e+03 Score=25.45 Aligned_cols=146 Identities=17% Similarity=0.094 Sum_probs=74.8
Q ss_pred eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--eeeeeccC--C---cEEEeecCC-------CceEEeeCC
Q 019635 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--AISIMAKS--G---FAELIDFNP-------IRTTDVQLP 80 (338)
Q Consensus 15 f~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--~as~~g~~--g---~~l~id~~~-------~~~~~v~lp 80 (338)
..+.|.+.|-..-| |+|+|.++|..+||..+ |+++.. +++.+|.- | +.++.|-.- ..+.-..-.
T Consensus 419 ~tI~v~~~VLesdG-s~~~Aai~aaslAL~dA-gvP~~~~Vagvs~gli~~~~~~~~il~D~~~~Ed~~~d~d~~va~t~ 496 (684)
T TIGR03591 419 YTIRVVSEILESNG-SSSMASVCGGSLALMDA-GVPIKAPVAGIAMGLIKEGDERFAVLSDILGDEDHLGDMDFKVAGTR 496 (684)
T ss_pred eEEEEEEEEEeCCC-ChHHHHHHHHHHHHHhc-CCCCcCCEEEEEEEEEcCCCcceEEEeCCChHHHhcCCceEEEEEcC
Confidence 56888888877777 66677777777777664 666544 33334321 1 357777532 233333323
Q ss_pred CCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCC----CchhhhcccccccchhhhhhhhhccCCCCChH
Q 019635 81 AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM----KPQEAISKVKTLSDVEGLCVAFACKNGSSDPV 156 (338)
Q Consensus 81 ~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~----~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~ 156 (338)
.+++.+-.+.+.. ......+.+-...|+.++.-+.+.+.. +..+.....+.+. ..+--.
T Consensus 497 ~gI~~lq~d~k~~----~i~~~~l~~al~~a~~~~~~I~~~m~~~l~~~~~~~~~~~p~~~-------------~~~I~~ 559 (684)
T TIGR03591 497 DGITALQMDIKID----GITREIMEQALEQAKEGRLHILGEMNKVISEPRAELSPYAPRIE-------------TIKINP 559 (684)
T ss_pred CceEEEEEEcCcC----CcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCeEE-------------EEecCH
Confidence 4555555555542 123344555555666665444443311 1000000001110 011123
Q ss_pred HHHHHhhhcCCCCHHHHHHHhch
Q 019635 157 FAVKEFLRKEPYTALDIEKITEE 179 (338)
Q Consensus 157 ~~~~~~l~~~~~~~~e~~~~~~~ 179 (338)
+.+.+.+...|.+..++.+.+|.
T Consensus 560 ~kI~~vIG~gGk~Ik~I~~~tg~ 582 (684)
T TIGR03591 560 DKIRDVIGPGGKVIREITEETGA 582 (684)
T ss_pred HHHHhhcCCCcHHHHHHHHHHCC
Confidence 56666677777888888887774
Done!