Query 019635
Match_columns 338
No_of_seqs 184 out of 1720
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 5.4E-58 1.9E-62 462.5 24.7 320 12-337 145-519 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 1.5E-49 5E-54 399.4 30.9 304 12-337 147-476 (478)
3 1pie_A Galactokinase; galactos 100.0 3.1E-40 1E-44 326.2 29.1 252 13-337 140-417 (419)
4 1wuu_A Galactokinase; galactos 100.0 1.3E-38 4.4E-43 312.6 25.8 243 13-337 130-398 (399)
5 2cz9_A Probable galactokinase; 100.0 9.2E-38 3.2E-42 300.0 27.1 241 13-335 86-350 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 1.5E-31 5E-36 259.2 8.1 195 12-303 96-321 (357)
7 1kvk_A MK, mevalonate kinase; 100.0 9.1E-29 3.1E-33 242.1 23.2 216 12-337 126-381 (395)
8 3gon_A Phosphomevalonate kinas 99.9 5.3E-26 1.8E-30 216.0 21.8 189 11-309 83-320 (335)
9 3k17_A LIN0012 protein; protei 99.9 2E-25 6.9E-30 216.8 21.9 191 12-309 96-343 (365)
10 2hfs_A Mevalonate kinase, puta 99.9 7.3E-25 2.5E-29 209.0 23.4 211 13-335 96-332 (332)
11 4hac_A Mevalonate kinase; GHMP 99.9 1.5E-24 5.2E-29 207.0 25.4 201 13-335 96-320 (321)
12 2x7i_A Mevalonate kinase; tran 99.9 3.8E-26 1.3E-30 215.7 14.0 192 10-305 82-297 (308)
13 2pg9_A Phosphomevalonate kinas 99.9 4.4E-25 1.5E-29 212.1 19.5 184 12-301 86-318 (337)
14 2oi2_A Mevalonate kinase; enzy 99.9 4.4E-24 1.5E-28 199.5 21.4 187 13-305 73-283 (292)
15 1h72_C HK, homoserine kinase; 99.9 1.7E-24 5.7E-29 203.1 17.0 197 13-336 75-296 (296)
16 1kkh_A Mevalonate kinase; mixe 99.9 1.6E-22 5.6E-27 191.5 19.1 178 13-302 98-304 (317)
17 3hul_A HSK, HK, homoserine kin 99.9 1.9E-21 6.6E-26 183.8 17.2 200 12-337 69-290 (298)
18 2gs8_A Mevalonate pyrophosphat 99.8 4.8E-20 1.6E-24 175.0 20.5 201 13-335 91-317 (317)
19 3pyf_A 4-diphosphocytidyl-2-C- 99.8 1.3E-19 4.4E-24 171.9 17.6 199 13-337 87-301 (306)
20 3qt5_A Mevalonate diphosphate 99.8 8.7E-19 3E-23 168.0 19.4 208 13-337 93-332 (332)
21 1fi4_A Mevalonate 5-diphosphat 99.7 9.7E-16 3.3E-20 151.0 23.2 190 13-306 122-348 (416)
22 1uek_A 4-(cytidine 5'-diphosph 99.7 1.1E-16 3.6E-21 149.0 11.3 75 13-92 75-161 (275)
23 2v8p_A 4-diphosphocytidyl-2-C- 99.7 1.8E-16 6E-21 147.3 9.1 77 13-92 80-170 (271)
24 2hke_A Diphosphomevalonate dec 99.6 1.2E-13 4E-18 134.6 25.0 190 13-307 96-320 (380)
25 3lto_A Mevalonate diphosphate 99.6 7.2E-14 2.5E-18 133.2 20.1 188 13-306 91-309 (323)
26 3f0n_A Mevalonate pyrophosphat 99.5 4.9E-13 1.7E-17 130.7 21.5 194 13-307 122-346 (414)
27 2ww4_A 4-diphosphocytidyl-2C-m 99.5 6.7E-14 2.3E-18 131.0 9.3 77 13-93 88-178 (283)
28 1vfj_A Nitrogen regulatory pro 42.5 56 0.0019 25.2 6.1 52 256-307 10-83 (116)
29 3m05_A Uncharacterized protein 41.7 62 0.0021 25.4 6.2 52 257-308 16-72 (114)
30 2eg2_A Nitrogen regulatory pro 39.7 84 0.0029 24.0 6.8 67 256-331 10-98 (112)
31 2j9c_A GLNK1, hypothetical nit 35.1 69 0.0024 24.9 5.6 52 256-307 12-85 (119)
32 3bzq_A Nitrogen regulatory pro 34.2 1.2E+02 0.004 23.1 6.8 66 257-331 13-100 (114)
33 1hwu_A PII protein; herbaspiri 30.6 1.3E+02 0.0044 22.8 6.4 52 256-307 10-83 (112)
34 3u1k_A Polyribonucleotide nucl 29.2 3.2E+02 0.011 27.6 10.7 37 15-53 429-465 (630)
35 2gw8_A PII signal transduction 28.2 1.4E+02 0.0048 22.7 6.3 52 256-307 12-85 (114)
36 2ns1_B Nitrogen regulatory pro 27.4 2.1E+02 0.0071 21.9 7.4 67 256-331 14-102 (116)
37 2o66_A PII protein; regulation 27.1 1.8E+02 0.0061 23.2 6.9 52 256-307 22-96 (135)
38 1o51_A Hypothetical protein TM 26.1 53 0.0018 25.6 3.4 21 256-276 29-49 (114)
39 3t9z_A GLNK3, nitrogen regulat 25.9 1.5E+02 0.005 23.1 6.0 50 257-306 11-82 (118)
40 3ncq_A Nitrogen regulatory pro 24.7 1.5E+02 0.005 23.1 5.8 50 257-306 11-82 (119)
41 2cz4_A Hypothetical protein TT 22.9 1.3E+02 0.0043 23.5 5.1 51 256-306 34-98 (119)
42 3gme_A Polyribonucleotide nucl 22.1 5.1E+02 0.017 25.7 10.5 37 15-53 423-459 (549)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=5.4e-58 Score=462.50 Aligned_cols=320 Identities=30% Similarity=0.468 Sum_probs=264.8
Q ss_pred ccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHh---CCCCcc-----------------------eeeeeccCCcEE
Q 019635 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPK-----------------------AISIMAKSGFAE 65 (338)
Q Consensus 12 ~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~---~~~ls~-----------------------~as~~g~~g~~l 65 (338)
..||++.|.|+||+|+|| |||++||++.|++.++ +.++++ ++|++|++|+++
T Consensus 145 ~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l 222 (520)
T 3v2u_C 145 LVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHAL 222 (520)
T ss_dssp CCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEE
T ss_pred CCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEE
Confidence 479999999999999999 9999999999999998 666655 889999999999
Q ss_pred EeecCC-CceEEeeCCC----CceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCch----hhhcccccc
Q 019635 66 LIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ----EAISKVKTL 136 (338)
Q Consensus 66 ~id~~~-~~~~~v~lp~----~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~----~~~~~~~~L 136 (338)
+|||+| ++++++|+|+ ++.|+|+||+++++||.++++.||+||+||+.|+++|++++|+..+ .......+|
T Consensus 223 ~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~sL 302 (520)
T 3v2u_C 223 YVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNL 302 (520)
T ss_dssp EEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCCH
T ss_pred EEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCcccccccccccccccH
Confidence 999999 9999999997 8999999999999999999999999999999999999999876411 111112479
Q ss_pred cchhhhhhh-h------------hccCCCCChHHHHHHhhhcC--CCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhh
Q 019635 137 SDVEGLCVA-F------------ACKNGSSDPVFAVKEFLRKE--PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 201 (338)
Q Consensus 137 ~d~~~~~~~-~------------~~~~~~~~~~~~~~~~l~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
||+.+.... + .....+++|.+.+++.|.+. +||.+|+.+.++.+.+++..++...+++ ..+.|
T Consensus 303 Rdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~~ 380 (520)
T 3v2u_C 303 RDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQVL 380 (520)
T ss_dssp HHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESCB
T ss_pred HHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--ccccH
Confidence 988643211 0 00112334556677777663 9999999999986555543333333333 23567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCC
Q 019635 202 KLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGA 279 (338)
Q Consensus 202 ~~~~ra~hv~~E~~rv~~~~~aL~~~~--~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGa 279 (338)
++|+|++||++|+.||.+++++|++++ .+.+|++.||++|+++|.+||++|+||||++|.|+++|++.|++|+|||||
T Consensus 381 ~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTGa 460 (520)
T 3v2u_C 381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGA 460 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEecC
Confidence 799999999999999999999999962 112469999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEE---cCCchHHHHHHHHHHHHhcccCCccccCCCCceeEEEeecCCceeeec
Q 019635 280 GWGGCVVALV---KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 337 (338)
Q Consensus 280 G~GG~viaL~---~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 337 (338)
|||||+|+|+ +++.++++++.|++.|+++++ +.++++++++.+|+++|+.||+++.
T Consensus 461 G~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~p~~GA~i~~ 519 (520)
T 3v2u_C 461 GWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRY--PDLTDEELKDAIIVSKPALGTCLYE 519 (520)
T ss_dssp CSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHC--TTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred CCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CccccccCCCeEEEecCCCceEEee
Confidence 9999999999 778999999999999998875 2344445678999999999999974
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=1.5e-49 Score=399.37 Aligned_cols=304 Identities=39% Similarity=0.622 Sum_probs=256.3
Q ss_pred ccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEee
Q 019635 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELID 68 (338)
Q Consensus 12 ~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id 68 (338)
..||++.|.|+||.|+|||||||++||++.|++.+++.++++ +++++|++|+++++|
T Consensus 147 ~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~ 226 (478)
T 2a2c_A 147 LTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIE 226 (478)
T ss_dssp CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEE
T ss_pred CCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEE
Confidence 468999999999999999999999999999999999998765 678999999999999
Q ss_pred cCCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhc
Q 019635 69 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 148 (338)
Q Consensus 69 ~~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~ 148 (338)
|+|+.+.++++|+++.|+|+||++++++..+ +.||.|+.||+.|+++|++++|+. |..+++|+|+++. .
T Consensus 227 f~~~~~~~~~~~~~~~~vi~~s~~~~~t~~t--~~yn~r~~e~~~A~~~L~~~~~~~----~~~~~~l~d~~~~-----~ 295 (478)
T 2a2c_A 227 FSPLRATDVKLPSGAVFVIANSCVEMNKAAT--SHFNIRVMECRLAAKLLAKYKSLQ----WDKVLRLEEVQAK-----L 295 (478)
T ss_dssp TTTTEEEEECCCTTEEEEEEECCCCCCGGGS--SHHHHHHHHHHHHHHHHHHHTTCC----TTTCCCHHHHHHH-----H
T ss_pred cCCCceEEecCCCCcEEEEEeCCCccccccc--chhHHHHHHHHHHHHHHHhhhccc----ccccchHHhhhhh-----h
Confidence 9999999999999999999999997654443 799999999999999999998764 3446788888543 2
Q ss_pred cCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--
Q 019635 149 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS-- 226 (338)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~-- 226 (338)
..++.+|.+.+.+++.+.+++.+++.+.++.+.+++.....+..+. ..+.+++++|+.|++.|+.|+..++++|.+
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~~ 373 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQ--DVLIFKLYQRAKHVYSEAARVLQFKKICEEAP 373 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445577888999998888999999998887665554333322221 224567899999999999999999999998
Q ss_pred -CCCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHH
Q 019635 227 -NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 305 (338)
Q Consensus 227 -~~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y 305 (338)
+ |++.||++|+++|+++|++|++|+|++|+|+++++++|++|+||||||||||+++|++++.+++++++|++.|
T Consensus 374 ~~-----d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l~~~y 448 (478)
T 2a2c_A 374 EN-----MVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAY 448 (478)
T ss_dssp TT-----HHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred cc-----HHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEcHHHHHHHHHHHHHHH
Confidence 6 9999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HhcccCCccccCCCCceeEEEeecCCceeeec
Q 019635 306 YQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 337 (338)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 337 (338)
++.++....+ ..+.+|+++|++||+++.
T Consensus 449 ~~~~~~~~~~----~~~~~~~~~p~~Ga~~~~ 476 (478)
T 2a2c_A 449 YQRSDGSLAP----EKQSLFATKPGGGALVLL 476 (478)
T ss_dssp HC-------------CCSEEEECCBCCCEEEE
T ss_pred HHhcCccccC----CCCcEEEEcCCCCeEeec
Confidence 8876200001 134689999999999875
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=3.1e-40 Score=326.18 Aligned_cols=252 Identities=26% Similarity=0.351 Sum_probs=216.5
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELID 68 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~id 68 (338)
.||++.|.++||.|+|||||||+++|++.|++.+++.++++ +++++|+.+.++++|
T Consensus 140 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d 219 (419)
T 1pie_A 140 KGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD 219 (419)
T ss_dssp SCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEE
T ss_pred CCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEee
Confidence 68999999999999999999999999999999999998765 467888888999999
Q ss_pred cCCCceEEeeCC-CCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhh
Q 019635 69 FNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 147 (338)
Q Consensus 69 ~~~~~~~~v~lp-~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~ 147 (338)
+.+..++++++| +++.|++++|++ ++.+..+.||+|+.||+.|+++|+++.+ +..|+++.
T Consensus 220 ~~~~~~~~l~~~~~~~~~vl~~~~~---~~~t~~~~y~~r~~~~~~a~~~l~~~~~---------v~~l~~~~------- 280 (419)
T 1pie_A 220 CNTLKYEMVPVELRDYDIVIMNTNK---PRALTESKYNERFAETREALKRMQTRLD---------IQSLGELS------- 280 (419)
T ss_dssp TTTCCEEEEECCCTTEEEEEEECCC---CCCTTCHHHHHHHHHHHHHHHHHHHHCC---------CSSGGGCC-------
T ss_pred cCCCceEEeecCCCCcEEEEEECCC---ccccccchHHHHHHHHHHHHHHHhhccc---------cCchhhCC-------
Confidence 999999999998 689999999998 5577778999999999999999987532 24555442
Q ss_pred ccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019635 148 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~ 227 (338)
.+++++.... +. ....++|+.|++.|+.|+..++++|.++
T Consensus 281 ----------------------~~~~~~~~~~-l~-----------------~~~~~~~~~~~v~e~~r~~~~~~al~~~ 320 (419)
T 1pie_A 281 ----------------------NEEFDANTDL-IG-----------------DETLIKRARHAVYENNRTKIAQKAFVAG 320 (419)
T ss_dssp ----------------------HHHHHHTGGG-TC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHhh-cC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1222222211 10 0137889999999999999999999998
Q ss_pred CCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhC-CCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHH
Q 019635 228 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 228 ~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~-Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
|++.||++|+++|.++++.|++++|++|.+++.+++. |++|+||||||||||+++|++++.++++++.|++.|+
T Consensus 321 -----d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~ 395 (419)
T 1pie_A 321 -----NLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYE 395 (419)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHH
Confidence 8999999999999999998999999999999999997 9999999999999999999998888999999999998
Q ss_pred hcccCCccccCCCCceeEEEeecCCceeeec
Q 019635 307 QSRIDRGVINNNDLGLYVFASKPSSGAAKFK 337 (338)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 337 (338)
+.++ .++.+|+++|++||++++
T Consensus 396 ~~~g---------~~~~~~~~~~~~Ga~v~~ 417 (419)
T 1pie_A 396 EVVG---------YPASFYVAQIGSGSTKLD 417 (419)
T ss_dssp HHHS---------SCCEEEECCBCCCSBCC-
T ss_pred HhcC---------CCCeEEEEcCCCCeeecc
Confidence 7654 567899999999999875
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.3e-38 Score=312.57 Aligned_cols=243 Identities=28% Similarity=0.412 Sum_probs=207.1
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELID 68 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~id 68 (338)
.||++.+.++||.|+|||||||+++|++.|++.+++.++++ +++++|+.++++++|
T Consensus 130 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~ 209 (399)
T 1wuu_A 130 PGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLID 209 (399)
T ss_dssp CEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEE
T ss_pred CCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEe
Confidence 68999999999999999999999999999999999998765 457888888899999
Q ss_pred cCCCceEEeeCC-CCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhh
Q 019635 69 FNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 147 (338)
Q Consensus 69 ~~~~~~~~v~lp-~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~ 147 (338)
+.+..++++++| +++.|++++|++ ++.|..+.||.|+.||+.|+++|+. .+++++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~vl~~~~~---~~~t~~~~y~~r~~~~~~a~~~l~~-------------~~l~~~~------- 266 (399)
T 1wuu_A 210 CRSLETSLVPLSDPKLAVLITNSNV---RHSLASSEYPVRRRQCEEVARALGK-------------ESLREVQ------- 266 (399)
T ss_dssp TTTCCEEEEECCCSSEEEEEEEEEE---EC--CTTTHHHHHHHHHHHHHHTTC-------------SSTTSCC-------
T ss_pred cCCCceEEecCCCCCeEEEEEECCC---ccccccccHHHHHHHHHHHHHHhCh-------------hhhhcCC-------
Confidence 999999999998 489999999998 5677778999999999999998864 2344331
Q ss_pred ccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019635 148 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~ 227 (338)
.+++.+.+.. +++ ..++|+.|++.|+.|+..++++|.++
T Consensus 267 ----------------------~~~~~~~~~~-l~~------------------~~~~r~~~~~~e~~r~~~~~~al~~~ 305 (399)
T 1wuu_A 267 ----------------------LEELEAARDL-VSK------------------EGFRRARHVVGEIRRTAQAAAALRRG 305 (399)
T ss_dssp ----------------------HHHHTTGGGG-SCH------------------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHhh-cCH------------------HHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 1111111110 111 26889999999999999999999998
Q ss_pred CCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHh-CCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHH
Q 019635 228 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 228 ~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~-~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
|++.||++|+++|+++++.+++++|++|++++.+++ .|++|+||||||||||+++|++++.++++.+.|++.|
T Consensus 306 -----d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~- 379 (399)
T 1wuu_A 306 -----DYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY- 379 (399)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC-
T ss_pred -----CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh-
Confidence 899999999999999999899999999999999999 7999999999999999999998888899999998887
Q ss_pred hcccCCccccCCCCceeEEEeecCCceeeec
Q 019635 307 QSRIDRGVINNNDLGLYVFASKPSSGAAKFK 337 (338)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 337 (338)
+ ..+.+|+++|++||+++.
T Consensus 380 --~----------~~~~~~~~~~~~Ga~~~~ 398 (399)
T 1wuu_A 380 --G----------GTATFYLSQAADGAKVLC 398 (399)
T ss_dssp --S----------SCCEEEEECCCCCSEECC
T ss_pred --C----------CCCcEEEEcCCCCeeecc
Confidence 2 456899999999999874
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=9.2e-38 Score=299.99 Aligned_cols=241 Identities=22% Similarity=0.309 Sum_probs=206.6
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELID 68 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~id 68 (338)
.||++.+.++||.|+|||||||+++|++.|++.+++.++++ +++++|+.++++++|
T Consensus 86 ~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d 165 (350)
T 2cz9_A 86 GGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLD 165 (350)
T ss_dssp CEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEE
T ss_pred CCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEe
Confidence 68999999999999999999999999999999999998765 667788888999999
Q ss_pred cCCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhc
Q 019635 69 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 148 (338)
Q Consensus 69 ~~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~ 148 (338)
+.+..++++++|+++.|++++|+++ +.+....||.|+.+|+.|+++++. .+||++..
T Consensus 166 ~~~~~~~~l~~~~~~~~vl~~~~~~---~~~~t~~~~~r~~~~~~a~~~~~~-------------~~lr~~~~------- 222 (350)
T 2cz9_A 166 THTLDYEYIPFPKDVSILVFYTGVR---RELASSEYAERKHIAEESLKILGK-------------GSSKEVRE------- 222 (350)
T ss_dssp TTTCCEEEEECCTTEEEEEEECSCC-------CHHHHHHHHHHHHHHHHHTC-------------SCGGGCCG-------
T ss_pred cCCCcEEEEcCCCCcEEEEEECCCC---CccccchHHHHHHHHHHHHHHhCh-------------hhhhhCCH-------
Confidence 9999999999998999999999984 334445699999999999998863 35664421
Q ss_pred cCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019635 149 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~ 228 (338)
+++ . .+++ .+++|..|++.|..|+..++.+|.++
T Consensus 223 ----------------------~~~----~-~l~~------------------~~~~~~~~~~~~~~~~~~~~~al~~~- 256 (350)
T 2cz9_A 223 ----------------------GEL----S-KLPP------------------LHRKFFGYIVRENARVLEVRDALKEG- 256 (350)
T ss_dssp ----------------------GGG----G-GSCH------------------HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ----------------------HHH----h-hCCH------------------HHHHHHHHHhhHHHHHHHHHHHHHhC-
Confidence 010 0 0111 25678899999999999999999998
Q ss_pred CChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhc
Q 019635 229 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQS 308 (338)
Q Consensus 229 ~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~ 308 (338)
|++.||++|+++|.++++.+++++|+++++++.+++.|++|+||||||||||+++|++++.++++.++|++.|.+.
T Consensus 257 ----d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~~~~ 332 (350)
T 2cz9_A 257 ----NVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKR 332 (350)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHHHHh
Confidence 8999999999999999998899999999999999999999999999999999999998888899999999999876
Q ss_pred ccCCccccCCCCceeEEEeecCCceee
Q 019635 309 RIDRGVINNNDLGLYVFASKPSSGAAK 335 (338)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~p~~Ga~v 335 (338)
++ +++.+|+++|++||++
T Consensus 333 ~~---------~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 333 FP---------WKARHFIVEPSDGVGI 350 (350)
T ss_dssp CC---------SCCEEEEECEECCSBC
T ss_pred hC---------CCCcEEEecCCCCCCC
Confidence 43 5678999999999974
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.5e-31 Score=259.24 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=138.7
Q ss_pred ccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------------------eeeeeccCCcEEEe
Q 019635 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSGFAELI 67 (338)
Q Consensus 12 ~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------------------~as~~g~~g~~l~i 67 (338)
..||++.+.++||.|+|||||||++||++.|++.+++.++++ +++++|+...+.+.
T Consensus 96 ~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~ 175 (357)
T 3k85_A 96 PKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFL 175 (357)
T ss_dssp CCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEE
T ss_pred CCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEe
Confidence 358999999999999999999999999999999999998765 56778876666666
Q ss_pred ecCCCceEEeeCCCC------ceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhh
Q 019635 68 DFNPIRTTDVQLPAG------GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 141 (338)
Q Consensus 68 d~~~~~~~~v~lp~~------~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~ 141 (338)
|+.+..++++++|++ +.++|++|++++ . ++++|++.. ..+.+
T Consensus 176 ~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~---~---------------a~~~l~~~~-----------~~~~~--- 223 (357)
T 3k85_A 176 QNDLVIVNPLKMKRWIVDELESSMVLYFTGRSR---S---------------SAAIINEQK-----------KNTSE--- 223 (357)
T ss_dssp TTTEEEEEEECCCHHHHHHHHHTEEEECC---------------------------------------------------
T ss_pred CCCceeEEEEecChhhhhhcCceEEEEECCCcc---c---------------HHHHHHHHH-----------HHhhc---
Confidence 777778899999864 689999999742 2 334444321 00000
Q ss_pred hhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 019635 142 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 221 (338)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~ 221 (338)
.+ ..+.|+.|.+.+ ++.+++
T Consensus 224 ---------------------------------------~~-------------------~~~~~~~~~i~~--~~~~~~ 243 (357)
T 3k85_A 224 ---------------------------------------GN-------------------QTAIEAMHKIKQ--SAIDTK 243 (357)
T ss_dssp ------------------------------------------------------------CCTTHHHHHHHH--HHHHHH
T ss_pred ---------------------------------------Cc-------------------HHHHHHHHHHHH--HHHHHH
Confidence 00 033567777775 888999
Q ss_pred HHHhcCCCChhhHHHHHHHHHhhHHHHhhh-cCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHH
Q 019635 222 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 300 (338)
Q Consensus 222 ~aL~~~~~~~~d~~~lg~lm~~sh~slr~~-~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~ 300 (338)
++|+++ |++.||++|+++|++++++ +++|+|++|+|++.+++.|++|+||||||+|||+++|++++..+++.++
T Consensus 244 ~aL~~~-----d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG~vial~~~~~~~~~~~~ 318 (357)
T 3k85_A 244 LALLKG-----DVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRA 318 (357)
T ss_dssp HHHTTT-----CHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC---CEEEECCHHHHHHHHHH
T ss_pred HHHHcC-----CHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCCCEEEEEecHHHHHHHHHH
Confidence 999998 8999999999999999987 8999999999999999999999999999999999999987767777777
Q ss_pred HHH
Q 019635 301 LKE 303 (338)
Q Consensus 301 l~~ 303 (338)
|++
T Consensus 319 l~~ 321 (357)
T 3k85_A 319 LNN 321 (357)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.96 E-value=9.1e-29 Score=242.12 Aligned_cols=216 Identities=17% Similarity=0.195 Sum_probs=168.8
Q ss_pred ccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCC-----CCc-------c--------------------------
Q 019635 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----EVP-------K-------------------------- 53 (338)
Q Consensus 12 ~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~-----~ls-------~-------------------------- 53 (338)
..||++.+.++||.|+|||||||++||++.|++.+++. +++ +
T Consensus 126 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~ 205 (395)
T 1kvk_A 126 LPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDN 205 (395)
T ss_dssp CCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHH
T ss_pred CCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCcch
Confidence 46899999999999999999999999999999999998 666 3
Q ss_pred eeeeeccCCcEEEeecCCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhccc
Q 019635 54 AISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 133 (338)
Q Consensus 54 ~as~~g~~g~~l~id~~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~ 133 (338)
+++++| +++++ ++..++++++|+++.|++++++++ +.|. .+.+.+
T Consensus 206 ~~~~~G---g~~~~--~~~~~~~l~~~~~~~~vl~~~~~~---~~T~------------~~~~~~--------------- 250 (395)
T 1kvk_A 206 SVSTWG---GALRY--QQGKMSSLKRLPALQILLTNTKVP---RSTK------------ALVAGV--------------- 250 (395)
T ss_dssp HHHHHC---SEEEE--SSSCEEECSCCCCEEEEEEECCCC---CCHH------------HHHHHH---------------
T ss_pred HHhhhc---ceEEE--cCCCceeccCCCCcEEEEEECCCC---CchH------------HHHHHH---------------
Confidence 334554 45554 566788888878899999999984 3331 011111
Q ss_pred ccccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHH
Q 019635 134 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 213 (338)
Q Consensus 134 ~~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E 213 (338)
++... ......+ ..++|+.|++.|
T Consensus 251 ---~~~~~----------------------------------~~~~~~~-------------------~~~~~~~~~~~~ 274 (395)
T 1kvk_A 251 ---RSRLI----------------------------------KFPEIMA-------------------PLLTSIDAISLE 274 (395)
T ss_dssp ---HHHHH----------------------------------HSHHHHH-------------------HHHHHHHHHHHH
T ss_pred ---HHHHH----------------------------------HCHHHHH-------------------HHHHHHHHHHHH
Confidence 10000 0000001 167889999999
Q ss_pred HHHHHHH-HHHHhcCCCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCC
Q 019635 214 AKRVHAF-KDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 292 (338)
Q Consensus 214 ~~rv~~~-~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~ 292 (338)
+.|+... +.+|.++ |++.||++|+++|.++++ |++++|++|++++.+++.|+ |+||||||||||+++|++++
T Consensus 275 ~~~~l~~~~~al~~~-----d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~~ 347 (395)
T 1kvk_A 275 CERVLGEMAAAPVPE-----QYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKPG 347 (395)
T ss_dssp HHHHHHHHTTCCCHH-----HHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTC-EEEECSSCSSSEEEEEECTT
T ss_pred HHHHHHhhhccccHH-----HHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHcCC-ceeeccCCCCCEEEEEecCC
Confidence 9997766 5677776 899999999999999997 89999999999999999999 99999999999999999887
Q ss_pred chHHHHHHHHHHHHhcccCCccccCCCCceeEEEee-cCCceeeec
Q 019635 293 IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASK-PSSGAAKFK 337 (338)
Q Consensus 293 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~-p~~Ga~v~~ 337 (338)
..+++++.+.+.|.+.+ + .+|+++ ++.|+++..
T Consensus 348 ~~~~~~~~~~~~~~~~g----------~--~~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 348 LERAKVEAAKQALTGCG----------F--DCWETSIGAPGVSMHS 381 (395)
T ss_dssp CCHHHHHHHHHHHHHTT----------C--EEEEEEESCCCSEEEC
T ss_pred CCHHHHHHHHHHHHHcC----------C--EEEEEecCCCcEEEEe
Confidence 77888889988887664 2 477777 678998864
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.94 E-value=5.3e-26 Score=215.96 Aligned_cols=189 Identities=19% Similarity=0.180 Sum_probs=143.9
Q ss_pred cccceEEEEEecCCCC---CCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcE
Q 019635 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFA 64 (338)
Q Consensus 11 ~~~gf~~~i~s~vP~g---sGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~ 64 (338)
.+.||++.|.|+||.+ +|||||||++||++.|++.+++.++++ +++++|+ +
T Consensus 83 ~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg~D~a~a~~Gg---~ 159 (335)
T 3gon_A 83 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAED---L 159 (335)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTS---C
T ss_pred CCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCCCCcceeecCC---e
Confidence 3468999999999987 699999999999999999999998765 7788874 3
Q ss_pred EEeecC----------------------CCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHh
Q 019635 65 ELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 122 (338)
Q Consensus 65 l~id~~----------------------~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~ 122 (338)
+++.+. +...++++.|.++.+++++++.+. .| ..+...+.++
T Consensus 160 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~t------------~~~v~~v~~~- 223 (335)
T 3gon_A 160 VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVA---VS------------SHMVQQIKQN- 223 (335)
T ss_dssp EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCC---CH------------HHHHHHHGGG-
T ss_pred EEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCChh---hH------------HHHHHHHHHH-
Confidence 433322 135677777888999999999842 22 1111111110
Q ss_pred CCCchhhhcccccccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhh
Q 019635 123 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK 202 (338)
Q Consensus 123 ~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (338)
T Consensus 224 -------------------------------------------------------------------------------- 223 (335)
T 3gon_A 224 -------------------------------------------------------------------------------- 223 (335)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhhHHHHhhh-cCCCCHHHHHHHHHHHhCCCcEEEEeCCCC
Q 019635 203 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGW 281 (338)
Q Consensus 203 ~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~-~~vs~peld~l~e~a~~~Ga~GarisGaG~ 281 (338)
..-.++.....++.+++.+|+++ |++.||++|+++|.+++++ +++++|++|.|++++++.|+ |+|||||||
T Consensus 224 --~~~~~~~~~~~~~~~~~~aL~~~-----d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~-~akltGAG~ 295 (335)
T 3gon_A 224 --INQNFLTSSKETVVSLVEALEQG-----KSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGG 295 (335)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE-EEEECTTCS
T ss_pred --hHHHHHHHHHHHHHHHHHHHHhC-----cHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCc-EEEEccccc
Confidence 00012234456788899999998 8999999999999999996 58999999999999999996 899999999
Q ss_pred cceEEEEEcCCchHHHHHHHHHHHHhcc
Q 019635 282 GGCVVALVKESIDSQFILNLKEQFYQSR 309 (338)
Q Consensus 282 GG~viaL~~~~~~~~~~~~l~~~y~~~~ 309 (338)
|||+|+|++++ +..+.+.+.|.+.+
T Consensus 296 Ggc~ial~~~~---~~~~~i~~~~~~~G 320 (335)
T 3gon_A 296 GDCGIALSFDA---QSTKTLKNRWADLG 320 (335)
T ss_dssp SSEEEEEECSH---HHHHHHHHHHHHTT
T ss_pred hheEEEEECCH---HHHHHHHHHHHHCC
Confidence 99999999753 23455666666665
No 9
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.94 E-value=2e-25 Score=216.77 Aligned_cols=191 Identities=16% Similarity=0.159 Sum_probs=145.4
Q ss_pred ccceEEEEEecCCC----CCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcE
Q 019635 12 FQLFNHINSLFFNL----GSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFA 64 (338)
Q Consensus 12 ~~gf~~~i~s~vP~----gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~ 64 (338)
..||++.|.|+||. ++|||||||++||++.|++.+++.++++ +++++|+ +
T Consensus 96 ~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~~g~D~~~~~~Gg---~ 172 (365)
T 3k17_A 96 LTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSCGDIASCMYGG---W 172 (365)
T ss_dssp CCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCS---E
T ss_pred CCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccHHHHhcCC---E
Confidence 36899999999997 5699999999999999999999998776 6777863 4
Q ss_pred EEee-cC----------------------CCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHH
Q 019635 65 ELID-FN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 121 (338)
Q Consensus 65 l~id-~~----------------------~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~ 121 (338)
+++. |. ...++++++|++ ++++++|++++ .|. .+.+.+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~---sT~------------~~~~~v~~~ 236 (365)
T 3k17_A 173 IAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPV---STG------------KLVSQIHAF 236 (365)
T ss_dssp EEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCC---CHH------------HHHHHHHHH
T ss_pred EEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCcc---chH------------HHHHHHHHH
Confidence 4443 32 357889999888 99999999853 331 122222110
Q ss_pred hCCCchhhhcccccccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhh
Q 019635 122 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 201 (338)
Q Consensus 122 ~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
++.
T Consensus 237 ---------------~~~-------------------------------------------------------------- 239 (365)
T 3k17_A 237 ---------------KQE-------------------------------------------------------------- 239 (365)
T ss_dssp ---------------HHH--------------------------------------------------------------
T ss_pred ---------------HHh--------------------------------------------------------------
Confidence 000
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHhcCCCChhhHHHHHHHHHhhHHHHhhhcCC------CCHHHHHHHHHHHhCCCcEE
Q 019635 202 KLHQRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC------SCPELEELVNVCRNNGALGA 274 (338)
Q Consensus 202 ~~~~ra~hv~~E~-~rv~~~~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~~~v------s~peld~l~e~a~~~Ga~Ga 274 (338)
.-++..|++.+. .++.+++++|.++ |++.||++|+++|++||+ +++ ++|++|+|++.+++.|++ +
T Consensus 240 -~~~~~~~~~~~~~~~~~~~~~aL~~g-----d~~~lg~lm~~~~~~l~~-l~v~~~~~is~p~ld~l~~~a~~~Ga~-a 311 (365)
T 3k17_A 240 -DSKNYQHFLTRNNEIMKQIIQAFHTK-----DEELLYSSIKENRRILQE-LGTKAGVNIETSLLKELADSAENMGGA-G 311 (365)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHH-HHHHHTCCCSCHHHHHHHHHHHHTTSE-E
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHH-hhhhcCCcccCHHHHHHHHHHHhcCCE-E
Confidence 001235666774 5678999999998 899999999999999998 565 999999999999999998 9
Q ss_pred EEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhcc
Q 019635 275 RLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 309 (338)
Q Consensus 275 risGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~~ 309 (338)
||||||||||+++|++++. ..+.+.+.+.+.+
T Consensus 312 k~sGAGgGg~vial~~~~~---~~~~l~~~l~~~g 343 (365)
T 3k17_A 312 KSSGSGGGDCGIAFSKTKE---LAEKLVNEWEKLG 343 (365)
T ss_dssp EECTTCSSSEEEEEESSHH---HHHHHHHHHHHTT
T ss_pred EecCCCCCCEEEEEECCHH---HHHHHHHHHHHCC
Confidence 9999999999999997642 2344444444444
No 10
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.93 E-value=7.3e-25 Score=208.98 Aligned_cols=211 Identities=24% Similarity=0.355 Sum_probs=153.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeec
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDF 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~ 69 (338)
.||++.+.++||.|+|||||||+.+|++.|++.+++.++++ .++++| .++.++.
T Consensus 96 ~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~D~~~~~~G---g~~~~~~ 172 (332)
T 2hfs_A 96 DGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYG---GLILYRR 172 (332)
T ss_dssp SEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSHHHHHHHHC---EEEEEEE
T ss_pred CceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcHhHHHHhcC---CeEEEec
Confidence 48999999999999999999999999999999999988765 334555 3555544
Q ss_pred CC--CceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhh
Q 019635 70 NP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 147 (338)
Q Consensus 70 ~~--~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~ 147 (338)
.. ..++++++|+++.+++++++++ +.|. +++++. ..+++..
T Consensus 173 ~~g~~~~~~~~~~~~~~~vl~~~~~~---~~T~---------------~~~~~~------------~~~~~~~------- 215 (332)
T 2hfs_A 173 QNGKSVFKPIAFQQRLYLVVVGTGIN---ASTA---------------KVVNDV------------HKMKQQQ------- 215 (332)
T ss_dssp CSSSEEEEEECCCSCEEEEEEECSCC---CCHH---------------HHHHHH------------HHHHHHC-------
T ss_pred CCCCcceeeecCCCCcEEEEEECCCC---ccHH---------------HHHHHH------------HHHHHhC-------
Confidence 33 2578888888999999999984 3331 122211 0111100
Q ss_pred ccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019635 148 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~ 227 (338)
.+++ + ..++++.| ++..++.+|.++
T Consensus 216 ----------------------~~~~--------~-------------------~~~~~~~~------~~~~~~~al~~~ 240 (332)
T 2hfs_A 216 ----------------------PVQF--------K-------------------RLYDNYTH------IVSQAREALQKG 240 (332)
T ss_dssp ----------------------HHHH--------H-------------------HHHHHHHH------HHHHHHHHHHHT
T ss_pred ----------------------HHHH--------H-------------------HHHHHHHH------HHHHHHHHHHcC
Confidence 0000 0 02333333 345677888887
Q ss_pred CCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCC-chHHHHHHHHHHHH
Q 019635 228 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQFY 306 (338)
Q Consensus 228 ~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~-~~~~~~~~l~~~y~ 306 (338)
|++.|+++|+++|..++. +++++|+++++++.+++.|++|++|||+|+|||+++|++++ .++++.+.|++.|.
T Consensus 241 -----d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~ 314 (332)
T 2hfs_A 241 -----DLQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCP 314 (332)
T ss_dssp -----CHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCT
T ss_pred -----CHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHh
Confidence 899999999999988876 58899999999999999999999999999999999999775 46788889988775
Q ss_pred hcccCCccccCCCCceeEEEeecCCceee
Q 019635 307 QSRIDRGVINNNDLGLYVFASKPSSGAAK 335 (338)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 335 (338)
+.+ + ...+.+.|++||++
T Consensus 315 ~~~----------~-~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 315 EAK----------F-IWRYTVQPSAASNL 332 (332)
T ss_dssp TCC----------E-EEEEEECCSCC---
T ss_pred cCC----------c-eEEEEeccCCCCCC
Confidence 533 1 23466788999974
No 11
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.93 E-value=1.5e-24 Score=206.96 Aligned_cols=201 Identities=26% Similarity=0.236 Sum_probs=145.9
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeec
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDF 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~ 69 (338)
.||++.+.++||.|+|||||||+++|++.|++.+++.++++ +++++|+ ++++ .
T Consensus 96 ~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~~D~~~~~~Gg---~~~~-~ 171 (321)
T 4hac_A 96 NGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFGG---VVTI-P 171 (321)
T ss_dssp CCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCS---EEEE-T
T ss_pred CCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHcCC---eEEE-c
Confidence 58999999999999999999999999999999999998775 4566763 5555 1
Q ss_pred CCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhcc
Q 019635 70 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 149 (338)
Q Consensus 70 ~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~ 149 (338)
..+.+++| ++.+++++|+++ +.|. +++...+.+.+.. .
T Consensus 172 ---~~~~l~~p-~~~~vlv~p~~~---~sT~---------~~~~~~~~l~~~~--------------~------------ 209 (321)
T 4hac_A 172 ---ERRKLKTP-DCGIVIGDTGVF---SSTK---------ELVANVRQLRESY--------------P------------ 209 (321)
T ss_dssp ---TCCEECCC-CCEEEEEECCCC---CCHH---------HHHHHHHHHHHHC--------------H------------
T ss_pred ---CCceeccC-CCEEEEEECCCC---ccHH---------HHHHHHHHHHhcC--------------H------------
Confidence 12344466 799999999984 3331 1111111111100 0
Q ss_pred CCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019635 150 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~ 229 (338)
+.+++ ...+ + ...+..++++|.++
T Consensus 210 ---------------------~~~~~---------------------------~~~~----~--~~~~~~~~~al~~~-- 233 (321)
T 4hac_A 210 ---------------------DLIEP---------------------------LMTS----I--GKISRIGEQLVLSG-- 233 (321)
T ss_dssp ---------------------HHHHH---------------------------HHHH----H--HHHHHHHHHHHHHT--
T ss_pred ---------------------HHHHH---------------------------HHHH----H--HHHHHHHHHHHHhC--
Confidence 00000 0001 1 12245677888887
Q ss_pred ChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhcc
Q 019635 230 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 309 (338)
Q Consensus 230 ~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~~ 309 (338)
|++.|+++|+++|. +++.+++++|++|++++.+++.|++|+||||+|+|||+++|++++.++++.+.|++. +
T Consensus 234 ---d~~~lg~~~~~~~~-~~~~~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~----g 305 (321)
T 4hac_A 234 ---DYASIGRLMNVNQG-LLDALGVNILELSQLIYSARAAGAFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGA----G 305 (321)
T ss_dssp ---CHHHHHHHHHHHHH-HHHHHTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHT----T
T ss_pred ---CHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhC----C
Confidence 89999999999886 556679999999999999999999999999999999999999666777777777542 2
Q ss_pred cCCccccCCCCceeEEEeecC-Cceee
Q 019635 310 IDRGVINNNDLGLYVFASKPS-SGAAK 335 (338)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~p~-~Ga~v 335 (338)
..++.+++. +|++|
T Consensus 306 ------------~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 306 ------------GKVTITKPTEQGLKV 320 (321)
T ss_dssp ------------CEEEEECBCSCSSEE
T ss_pred ------------CeEEEEEECCCceec
Confidence 257888886 69886
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.93 E-value=3.8e-26 Score=215.72 Aligned_cols=192 Identities=20% Similarity=0.269 Sum_probs=143.2
Q ss_pred ecccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEE
Q 019635 10 TKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAEL 66 (338)
Q Consensus 10 ~~~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~ 66 (338)
+.+.||++.+.++||.|+|||||||+++|++.|++.+++.++++ .++.+ |.+++
T Consensus 82 ~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~d~~~~~~---g~~~~ 158 (308)
T 2x7i_A 82 NITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVS---GKPVW 158 (308)
T ss_dssp TCCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHHHHHHHHH---TSCEE
T ss_pred hhCCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchHHHHHhhC---CceEE
Confidence 34468999999999999999999999999999999999998876 22233 45667
Q ss_pred eecCCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhh
Q 019635 67 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 146 (338)
Q Consensus 67 id~~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~ 146 (338)
++ +...++++++|.++.+++++++++ +.|. ..| ..+++...
T Consensus 159 ~~-~g~~~~~~~~~~~~~~vi~~~~~~---~sT~-~~~-----------------------------~~l~~~~~----- 199 (308)
T 2x7i_A 159 FQ-KGHAETLKTLSLDGYMVVIDTGVK---GSTR-QAV-----------------------------HDVHKLCE----- 199 (308)
T ss_dssp EE-TTEEEECSCCCBSSEEEEEECCC-----CCS-CCC-----------------------------C------------
T ss_pred EE-cCCCceEeccCCCceEEEEECcCC---CCHH-HHH-----------------------------HHHHHHHh-----
Confidence 77 445677787777899999999884 3331 001 01110000
Q ss_pred hccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 019635 147 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 226 (338)
Q Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~ 226 (338)
..+ ..++ +.|+ ..++.+++.+|.+
T Consensus 200 ----------------------------------~~~------------------~~~~-~~~~---~~~~~~~~~al~~ 223 (308)
T 2x7i_A 200 ----------------------------------DPQ------------------YMSH-VKHI---GKLVLRASDVIEH 223 (308)
T ss_dssp -----------------------------------CC------------------HHHH-HHHH---HHHHHHHHHHHHT
T ss_pred ----------------------------------cCc------------------hHHH-HHHH---HHHHHHHHHHHHc
Confidence 000 0111 2232 2467788889999
Q ss_pred CCCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC-CchHHHHHHHHHHH
Q 019635 227 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQF 305 (338)
Q Consensus 227 ~~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~-~~~~~~~~~l~~~y 305 (338)
+ |++.|+++|+++|+++++ +++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.+.|++.|
T Consensus 224 ~-----d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 224 H-----KFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp T-----CHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred C-----CHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCC
Confidence 7 899999999999999998 5899999999999999999999999999999999999987 56667777776543
No 13
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.93 E-value=4.4e-25 Score=212.13 Aligned_cols=184 Identities=18% Similarity=0.192 Sum_probs=140.9
Q ss_pred ccceEEEEEecCCCC---CCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEE
Q 019635 12 FQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAE 65 (338)
Q Consensus 12 ~~gf~~~i~s~vP~g---sGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l 65 (338)
..||++.|.|+||.| +|||||||++||++.|++.+++.++++ +++++|+ .+.
T Consensus 86 ~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg--~~~ 163 (337)
T 2pg9_A 86 LRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAED--LVL 163 (337)
T ss_dssp CCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTS--CEE
T ss_pred CCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCC--EEE
Confidence 468999999999999 999999999999999999999998776 5778873 333
Q ss_pred Ee--ecC-------------------CCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCC
Q 019635 66 LI--DFN-------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 124 (338)
Q Consensus 66 ~i--d~~-------------------~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~ 124 (338)
+. |.. +..++++++|.++.|++++|+++ +.| ..+.+.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~---~~T------------~~~~~~~~~~--- 225 (337)
T 2pg9_A 164 YQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEV---AVS------------SHMVQQIKQN--- 225 (337)
T ss_dssp EECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCC---CCH------------HHHHHHHGGG---
T ss_pred EecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCc---cch------------HHHHHHHHHH---
Confidence 32 332 24688888888999999999984 333 2222222211
Q ss_pred CchhhhcccccccchhhhhhhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHH
Q 019635 125 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 204 (338)
Q Consensus 125 ~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (338)
++ ++ .
T Consensus 226 ------------~~-------------------------------------------~~-------------------~- 230 (337)
T 2pg9_A 226 ------------IN-------------------------------------------QN-------------------F- 230 (337)
T ss_dssp ------------CC-------------------------------------------HH-------------------H-
T ss_pred ------------HH-------------------------------------------HH-------------------H-
Confidence 00 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhhHHHHhhhc-CCCCHHHHHHHHHHHhCCCcEEEEeCCCCcc
Q 019635 205 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNGALGARLTGAGWGG 283 (338)
Q Consensus 205 ~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg~lm~~sh~slr~~~-~vs~peld~l~e~a~~~Ga~GarisGaG~GG 283 (338)
+..-..++.+++++|.++ |++.|+++|+++|+++++.. ++++|++|+|++.+++.|++ +|||||||||
T Consensus 231 -----~~~~~~~~~~~~~aL~~~-----d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~-ak~sGaGgGg 299 (337)
T 2pg9_A 231 -----LTSSKETVVSLVEALEQG-----KSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV-AKSSGAGGGD 299 (337)
T ss_dssp -----HHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE-EEECTTCSSS
T ss_pred -----HHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE-EEEeCCCCcc
Confidence 001245677889999998 89999999999999999774 38999999999999999999 9999999999
Q ss_pred eEEEEEcCC-chHHHHHHH
Q 019635 284 CVVALVKES-IDSQFILNL 301 (338)
Q Consensus 284 ~viaL~~~~-~~~~~~~~l 301 (338)
|+++|++++ .++++.++|
T Consensus 300 ~vial~~~~~~~~~~~~~l 318 (337)
T 2pg9_A 300 CGIALSFDAQSTKTLKNRW 318 (337)
T ss_dssp EEEEEECSHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHH
Confidence 999999764 344444444
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.92 E-value=4.4e-24 Score=199.54 Aligned_cols=187 Identities=20% Similarity=0.270 Sum_probs=135.1
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeec
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDF 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~ 69 (338)
.|+++.+.++||.|+|||||||..+|++.|++.+++.++++ +++++| .++++ +
T Consensus 73 ~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~d~~~~~~g---g~~~~-~ 148 (292)
T 2oi2_A 73 ACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSD---QPIRF-I 148 (292)
T ss_dssp CCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSHHHHHHTCS---SCEEE-E
T ss_pred CceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCchhHHHHhcC---ceEEE-E
Confidence 58999999999999999999999999999999999998775 223454 34444 3
Q ss_pred CCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhcc
Q 019635 70 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 149 (338)
Q Consensus 70 ~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~ 149 (338)
+....+++++|....+++++++++ +.| ..+.+.+.+.. .
T Consensus 149 ~~~~~~~~~~~~~~~~~i~~~~~~---~sT------------~~~~~~l~~~~------------~-------------- 187 (292)
T 2oi2_A 149 KNVGFTELEMDLSAYLVIADTGVY---GHT------------REAIQVVQNKG------------K-------------- 187 (292)
T ss_dssp TTTEEEECCCCCSCEEEEEECSSC---CCH------------HHHHHHHHHTG------------G--------------
T ss_pred cCCCceeecCCCCCEEEEEECCCC---CcH------------HHHHHHHHHHH------------h--------------
Confidence 444567777653333899999873 333 12223332210 0
Q ss_pred CCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019635 150 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~ 229 (338)
..++..|.+. ..+..++.+|.++
T Consensus 188 -----------------------------------------------------~~~~~~~~~~--~~~~~~~~al~~~-- 210 (292)
T 2oi2_A 188 -----------------------------------------------------DALPFLHALG--ELTQQAEIAISQK-- 210 (292)
T ss_dssp -----------------------------------------------------GGHHHHHHHH--HHHHHHHHHHHTT--
T ss_pred -----------------------------------------------------hhHHHHHHHH--HHHHHHHHHHHcC--
Confidence 0011112222 2355677889987
Q ss_pred ChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcC-CchHHHHHHHHHHH
Q 019635 230 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQF 305 (338)
Q Consensus 230 ~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~-~~~~~~~~~l~~~y 305 (338)
|++.|+++|+++|+.+++ +++++|+++++++.+++.|++|++|||+|+|||+++|+++ +.++++.+.|++.+
T Consensus 211 ---d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~ 283 (292)
T 2oi2_A 211 ---DAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKG 283 (292)
T ss_dssp ---CHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcC
Confidence 899999999999999997 5899999999999999999999999999999999999987 56677777777654
No 15
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.92 E-value=1.7e-24 Score=203.13 Aligned_cols=197 Identities=15% Similarity=0.202 Sum_probs=153.1
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeec
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDF 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~ 69 (338)
.|+++.+.++||.|+|||||||..+|++.|++++++.++++ .++++| |.++..++
T Consensus 75 ~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~ddv~~~~~g--g~~~~~~~ 152 (296)
T 1h72_C 75 KGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFG--GFTMVTNY 152 (296)
T ss_dssp CEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHC--SEEEEEET
T ss_pred CCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCccchHHHHhC--CEEEEEeC
Confidence 48999999999999999999999999999999999998875 225666 56666677
Q ss_pred CCCceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhcc
Q 019635 70 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 149 (338)
Q Consensus 70 ~~~~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~ 149 (338)
.+..+.++++|+++.+++++++++ ..| +.+.+.|.+
T Consensus 153 ~~~~~~~~~~~~~~~~vl~~p~~~---~~T------------~~~~~~l~~----------------------------- 188 (296)
T 1h72_C 153 EPLEVLHIPIDFKLDILIAIPNIS---INT------------KEAREILPK----------------------------- 188 (296)
T ss_dssp TTTEEEEECCCSCCCEEEECCSSC---CCH------------HHHHHTSCS-----------------------------
T ss_pred CceEEEEEcCCCCeEEEEEeCCCC---ccH------------HHHHHhccC-----------------------------
Confidence 777789999988899999999873 222 111111100
Q ss_pred CCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019635 150 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~ 229 (338)
. .+..|.+.+..|+..++.+|.++
T Consensus 189 -----------------------------------------------------~-~~~~~~~~~~~~~~~~~~al~~~-- 212 (296)
T 1h72_C 189 -----------------------------------------------------A-VGLKDLVNNVGKACGMVYALYNK-- 212 (296)
T ss_dssp -----------------------------------------------------C-CCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred -----------------------------------------------------c-CcHHHHHHHHHHHHHHHHHHHcC--
Confidence 0 01134556677888889999998
Q ss_pred ChhhHHHHHHHH--HhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHh
Q 019635 230 EEDKLKKLGDLM--NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 307 (338)
Q Consensus 230 ~~~d~~~lg~lm--~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~ 307 (338)
|++.|+++| |+.|++++. +++|+++++++.+++. ++|++|||+| +|+++|++++.++++.+.|++.|.
T Consensus 213 ---d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGsG--~~v~~l~~~~~~~~~~~~l~~~~~- 282 (296)
T 1h72_C 213 ---DKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGSG--PSIIAFPKEEFIDEVENILRDYYE- 282 (296)
T ss_dssp ---CHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTTS--SCEEEEECGGGHHHHHHHHHHHCS-
T ss_pred ---CHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecCC--hheEEEecHHHHHHHHHHHHHhcc-
Confidence 899999999 667888884 5799999999999998 8999999999 699999965677788888876542
Q ss_pred cccCCccccCCCCceeEEEeecCCceeee
Q 019635 308 SRIDRGVINNNDLGLYVFASKPSSGAAKF 336 (338)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 336 (338)
.+. ++++.+|++++
T Consensus 283 -------------~~~--~~~~~~Ga~v~ 296 (296)
T 1h72_C 283 -------------NTI--RTEVGKGVEVV 296 (296)
T ss_dssp -------------CEE--EECBCCCCEEC
T ss_pred -------------Cce--eccCCCCeEeC
Confidence 122 66778899875
No 16
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.89 E-value=1.6e-22 Score=191.50 Aligned_cols=178 Identities=22% Similarity=0.339 Sum_probs=130.2
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------------eeeeeccCCcEEEeec
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKSGFAELIDF 69 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------------~as~~g~~g~~l~id~ 69 (338)
.||++.+.++||.|+|||||||+++|++.|++.+++.++++ +++++| |.+ ++
T Consensus 98 ~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg~D~~~~~~G--g~~-~~-- 172 (317)
T 1kkh_A 98 TGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYK--GIL-EI-- 172 (317)
T ss_dssp SCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCSHHHHHHHHC--SEE-EE--
T ss_pred CCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHhC--CeE-EE--
Confidence 58999999999999999999999999999999999988765 455676 444 33
Q ss_pred CCCceEEeeCC--C----CceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhh
Q 019635 70 NPIRTTDVQLP--A----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLC 143 (338)
Q Consensus 70 ~~~~~~~v~lp--~----~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~ 143 (338)
++..++++++| + ++.+++++++++ +.|. .+.+.+.+ +++.
T Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~---~~T~------------~~~~~~~~---------------~~~~---- 218 (317)
T 1kkh_A 173 KNNKFRKIKGEFEEFLKNCKFLIVYAEKRK---KKTA------------ELVNEVAK---------------IENK---- 218 (317)
T ss_dssp SSSCEEEECHHHHHHHHTCCEEEEEEECCC---SCHH------------HHHHHHHT---------------CTTH----
T ss_pred cCCCceEecCCcccccccCcEEEEEECCCc---CcHH------------HHHHHHHH---------------hhcc----
Confidence 45567777653 1 268999999984 3331 11111111 1100
Q ss_pred hhhhccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019635 144 VAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDT 223 (338)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~a 223 (338)
++ . +.+..+ .+.++
T Consensus 219 --------------------------------------~~-------------------~-------~~~~~~--~~~~a 232 (317)
T 1kkh_A 219 --------------------------------------DE-------------------I-------FKEIDK--VIDEA 232 (317)
T ss_dssp --------------------------------------HH-------------------H-------HHHHHH--HHHHH
T ss_pred --------------------------------------HH-------------------H-------HHHHHH--HHHHH
Confidence 00 0 011111 13345
Q ss_pred HhcCCCChhhHHHHHHHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHH
Q 019635 224 VSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 302 (338)
Q Consensus 224 L~~~~~~~~d~~~lg~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~ 302 (338)
+..+ |++.|+++|+++|..+++ +++++|+++++++.+++.| +|+||||||+|||+++|++++.++++.+.|+
T Consensus 233 ~~~~-----d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~ 304 (317)
T 1kkh_A 233 LKIK-----NKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp HHCC-----SHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred HHcC-----CHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEEEechhhHHHHHHHHH
Confidence 6666 899999999998887775 5899999999999999999 9999999999999999998766666666664
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.87 E-value=1.9e-21 Score=183.77 Aligned_cols=200 Identities=19% Similarity=0.211 Sum_probs=137.9
Q ss_pred ccceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc-----------------eeeeeccCCcEEEeecCC--C
Q 019635 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------AISIMAKSGFAELIDFNP--I 72 (338)
Q Consensus 12 ~~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~-----------------~as~~g~~g~~l~id~~~--~ 72 (338)
..||++.+.++||.++|||||||..+|++.|++++++.++++ .++++| | +.+..... +
T Consensus 69 ~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg~~ddv~~~~~G--G-~~~~~g~ge~~ 145 (298)
T 3hul_A 69 LTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNVAPAVLG--N-WVVGAKLDGED 145 (298)
T ss_dssp CCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSCSTTHHHHHHC--S-EEEEEEETTEE
T ss_pred CCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCcccCcccccC--C-EEEEEeCCCcE
Confidence 468999999999999999999999999999999999999876 334455 3 33333322 3
Q ss_pred ceEEeeCCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCC
Q 019635 73 RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGS 152 (338)
Q Consensus 73 ~~~~v~lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~ 152 (338)
.+.++++|+ +.++++++.+. ..| ..+.+.|.++ ..
T Consensus 146 ~~~~~~~p~-~~~vlv~p~~~---~sT------------~~a~~~l~~~--------------~~--------------- 180 (298)
T 3hul_A 146 FYVRHLFPD-CALIAFIPKAE---LLT------------SESRGVLPDT--------------LP--------------- 180 (298)
T ss_dssp EEEEECCC--CEEEEEECCCC---CC--------------------CCE--------------EE---------------
T ss_pred EEEEcCCCC-eEEEEEECCCC---CCc------------HHHHHHHhhh--------------cc---------------
Confidence 345677664 89999998873 222 1222222110 00
Q ss_pred CChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 019635 153 SDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 232 (338)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~ 232 (338)
+. ..+.+..++..++.+|.++
T Consensus 181 ---------------------------------------------------~~---~~~~~~~~~~~~~~al~~~----- 201 (298)
T 3hul_A 181 ---------------------------------------------------FK---EAVQASSIANVMIAAILRN----- 201 (298)
T ss_dssp ---------------------------------------------------HH---HHHHHHHHHHHHHHHHTTT-----
T ss_pred ---------------------------------------------------HH---HHHHHHHHHHHHHHHHHcC-----
Confidence 00 0122345677788999998
Q ss_pred hHHHHHHHHHh--hHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHHhccc
Q 019635 233 KLKKLGDLMND--SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 310 (338)
Q Consensus 233 d~~~lg~lm~~--sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~~~~~ 310 (338)
|++.|+++|++ .|++++... +|+++++++.+++.|++|++|||+| +|+++|++++.++++.+.|++ .+
T Consensus 202 d~~~l~~~l~nd~~~e~~~~~~---~p~l~~l~~~~~~~Ga~ga~~SGsG--ptv~al~~~~~a~~v~~~l~~----~~- 271 (298)
T 3hul_A 202 DMTLAGEMMERDLWHEKYRSQL---VPHLAQIRDVAKNQGAYAACLSGAG--PTVLVFAPRNLANKLQTSLQT----LE- 271 (298)
T ss_dssp CHHHHHHHHTCCCC-----CTT---GGGHHHHHHHHHTTTCCEEEECTTS--SCEEEEECGGGHHHHHHHHHT----TC-
T ss_pred CHHHHHHHHhhhHHHHHHHHhh---CchHHHHHHHHHHCCCEEEEEeccc--hheEEEECHHHHHHHHHHHHh----cC-
Confidence 89999999973 488888553 8999999999999999999999999 899999985566666555543 32
Q ss_pred CCccccCCCCceeEEEeecC-Cceeeec
Q 019635 311 DRGVINNNDLGLYVFASKPS-SGAAKFK 337 (338)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~p~-~Ga~v~~ 337 (338)
..+.++++++. +|++|..
T Consensus 272 ---------~~~~~~~~~~~~~Ga~v~~ 290 (298)
T 3hul_A 272 ---------IDADVLLLDVEGSGAEVFR 290 (298)
T ss_dssp ---------CSSEEEEEEBCCCCCEEEE
T ss_pred ---------CCcEEEEcccCCCceEEEe
Confidence 34678888987 6999864
No 18
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.85 E-value=4.8e-20 Score=175.01 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=142.5
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.|+++.+.++||.++|||||||..+|++.|++.++|.++++ +++++| .+.....+.......|
T Consensus 91 ~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G~~~~~~~G---G~~~~~~~~~~~~~~~ 167 (317)
T 2gs8_A 91 AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFG---PVAAWDKDSGAIYKVE 167 (317)
T ss_dssp CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGGGGSC---SEEEECTTTCCEEECC
T ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcchhHhhhcC---ChheEeeCCCceeEEE
Confidence 57999999999999999999999999999999999999886 456665 3444544444445566
Q ss_pred CCCCceEE--EEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCChH
Q 019635 79 LPAGGTFV--VAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPV 156 (338)
Q Consensus 79 lp~~~~~v--v~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~ 156 (338)
+|.++.++ +++++. ++......|+. .+.+.
T Consensus 168 ~~~~~~~~v~i~~~~~---~~~~tt~~~~~----------~~~~~----------------------------------- 199 (317)
T 2gs8_A 168 TDLKMAMIMLVLNAAK---KPISSREGMKL----------CRDTS----------------------------------- 199 (317)
T ss_dssp CCCCEEEEEEECCCSS---CCSCHHHHHHH----------HHHHC-----------------------------------
T ss_pred ccccccEEEEEEECCC---cCcccHHHHHH----------HhhcC-----------------------------------
Confidence 66666643 336644 22222223321 11110
Q ss_pred HHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 019635 157 FAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKK 236 (338)
Q Consensus 157 ~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~ 236 (338)
. ...+|+.| ...|+..++.+|.++ |++.
T Consensus 200 --------------------------~------------------~~~~~~~~---~~~~~~~~~~al~~~-----d~~~ 227 (317)
T 2gs8_A 200 --------------------------T------------------TFDQWVEQ---SAIDYQHMLTYLKTN-----NFEK 227 (317)
T ss_dssp --------------------------T------------------THHHHHHH---HHHHHHHHHHHHHTT-----CHHH
T ss_pred --------------------------H------------------HHHHHHHH---HHHHHHHHHHHHHcC-----CHHH
Confidence 0 01123333 257888899999998 8999
Q ss_pred HHHHHHhhHHHHhhhcCCC-------CHHHHHHHHH---HHhCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHHHHHHH
Q 019635 237 LGDLMNDSHHSCSVLYECS-------CPELEELVNV---CRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 237 lg~lm~~sh~slr~~~~vs-------~peld~l~e~---a~~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
||++|+++|..+.+.+..+ .|.+.++++. +++.|+.++.+||+| ||+++|++++..+++.+.+++
T Consensus 228 lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG--ptv~~l~~~~~~~~v~~~l~~--- 302 (317)
T 2gs8_A 228 VGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG--PNVKVLCLEKDLAQLAERLGK--- 302 (317)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEGGGHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC--CeEEEEEcHHHHHHHHHHHhc---
Confidence 9999999888888765444 4445666654 345899999999999 999999987766767766654
Q ss_pred hcccCCccccCCCCceeEEEeecCCceee
Q 019635 307 QSRIDRGVINNNDLGLYVFASKPSSGAAK 335 (338)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 335 (338)
. ..++++++++|+++
T Consensus 303 --~------------~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 303 --N------------YRIIVSKTKDLPDV 317 (317)
T ss_dssp --T------------SEEEEEEBCCCCCC
T ss_pred --C------------CeEEEEecCCCCCC
Confidence 1 36889999999975
No 19
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.83 E-value=1.3e-19 Score=171.90 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=141.6
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.|+++.+.++||.++||+||||..+|++.|++++++.++++ .++++| | ..+.....-.+.+++
T Consensus 87 ~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~~Dv~~~~~G--g-~~~~~g~ge~~~~l~ 163 (306)
T 3pyf_A 87 PDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSDVPFALHG--G-TALGTGRGEELATVL 163 (306)
T ss_dssp CCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTHHHHHHB--S-EEEECSSSSCCEEEC
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCceeecC--c-eEEEEeeCCeEEEcc
Confidence 47999999999999999999999999999999999999886 455665 3 444444444678888
Q ss_pred CCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCCChHHH
Q 019635 79 LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFA 158 (338)
Q Consensus 79 lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~ 158 (338)
.|+++.+++++++++ ..| ..+.+.+.... ...++
T Consensus 164 ~~~~~~~vl~~P~~~---vsT------------~~a~~~l~~~~------------~~~~~------------------- 197 (306)
T 3pyf_A 164 SRNTFHWVLAFADSG---LLT------------SAVYNELDRLR------------EVGDP------------------- 197 (306)
T ss_dssp CSSCEEEEEEECSSC---CCH------------HHHHHHHHHHH------------HHSCC-------------------
T ss_pred CCCCcEEEEEECCCC---CcH------------HHHHHhhhhhc------------ccccc-------------------
Confidence 888999999999873 233 12223222210 00000
Q ss_pred HHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 019635 159 VKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLG 238 (338)
Q Consensus 159 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d~~~lg 238 (338)
. ...++..++.+|.++ |++.|+
T Consensus 198 -----------------------~------------------------------~~~~~~~~~~al~~~-----d~~~l~ 219 (306)
T 3pyf_A 198 -----------------------P------------------------------RLGEPGPVLAALAAG-----DPDQLA 219 (306)
T ss_dssp -----------------------C------------------------------CCCCHHHHHHHHHHT-----CHHHHG
T ss_pred -----------------------c------------------------------cccCHHHHHHHHHhC-----CHHHHH
Confidence 0 001244566778887 899999
Q ss_pred HHHHhhHHHHhhhcCCCCHHHHHHHHHHHhCCCcEEEEeCCCCcceEEEEEcCC-chHHHHHHHHHHHHhcccCCccccC
Q 019635 239 DLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQFYQSRIDRGVINN 317 (338)
Q Consensus 239 ~lm~~sh~slr~~~~vs~peld~l~e~a~~~Ga~GarisGaG~GG~viaL~~~~-~~~~~~~~l~~~y~~~~~~~~~~~~ 317 (338)
++|.+..+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++ .++++.+.|++ .+
T Consensus 220 ~~l~n~le~~~~~---~~P~l~~i~~~~~~~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~~~l~~----~g-------- 282 (306)
T 3pyf_A 220 PLLGNEMQAAAVS---LDPALARALRAGVEAGALAGIVSGSG--PTCAFLCTSASSAIDVGAQLSG----AG-------- 282 (306)
T ss_dssp GGCEETTHHHHHH---HCTHHHHHHHHHHHTTCSEEEECTTS--SEEEEEESSHHHHHHHHHHHHH----TT--------
T ss_pred HHhccchHHHHHH---hChHHHHHHHHHHhcCCCEEEEcCcc--hhheEEeCCHHHHHHHHHHHHh----cC--------
Confidence 9986544555533 27999999999999999999999999 9999999763 35555555543 33
Q ss_pred CCCceeEEEeecC-Cceeeec
Q 019635 318 NDLGLYVFASKPS-SGAAKFK 337 (338)
Q Consensus 318 ~~~~~~~~~~~p~-~Ga~v~~ 337 (338)
+...++++++. .||++..
T Consensus 283 --~~~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 283 --VCRTVRVATGPVPGARVVS 301 (306)
T ss_dssp --SSSEEEEEEECCBCSEEC-
T ss_pred --CcceEEEeecCCCCCEEec
Confidence 34567777664 6999864
No 20
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.81 E-value=8.7e-19 Score=167.99 Aligned_cols=208 Identities=14% Similarity=0.136 Sum_probs=141.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecC--C--Cce
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFN--P--IRT 74 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~--~--~~~ 74 (338)
.|+++.+.++||.++||+||||..+|++.|++++++.++++ +++++| |. +..+.. . ...
T Consensus 93 ~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~g~~~~~~~G--G~-~~~~~g~~~~~~~~ 169 (332)
T 3qt5_A 93 LHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFG--GF-AEWEKGHDDLTSYA 169 (332)
T ss_dssp CEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHCGGGGGGGSC--SE-EEEECCSSTTTCEE
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCchhhhcC--Ce-EEEecCCCCcccee
Confidence 37999999999999999999999999999999999999876 566776 44 444322 1 123
Q ss_pred EEee---CCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCC
Q 019635 75 TDVQ---LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNG 151 (338)
Q Consensus 75 ~~v~---lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~ 151 (338)
.+++ .++++.++++.+.... |...+ ...+++.. ..
T Consensus 170 ~~l~~~~~~~~l~~vv~vp~~~~-~~~ss--------------~~~~~~~~-----------------~~---------- 207 (332)
T 3qt5_A 170 HGINSNGWEKDLSMIFVVINNQS-KKVSS--------------RSGMSLTR-----------------DT---------- 207 (332)
T ss_dssp EEECCTTGGGGEEEEEECCCCCC-CC--C--------------HHHHHHHH-----------------HH----------
T ss_pred eecccccCCCCcEEEEEEEcCCC-CCCch--------------HHHHHHhh-----------------hc----------
Confidence 5665 3346777776655421 11111 11111110 00
Q ss_pred CCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 019635 152 SSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 231 (338)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~ 231 (338)
.. ...+++. .-..|+..++.||.++
T Consensus 208 -----------------------------s~-------------------~~~~~v~---~~~~~~~~l~~Al~~~---- 232 (332)
T 3qt5_A 208 -----------------------------SR-------------------FYQYWLD---HVDEDLNEAKEAVKNQ---- 232 (332)
T ss_dssp -----------------------------CT-------------------THHHHHH---HHHHHHHHHHHHHHHT----
T ss_pred -----------------------------Ch-------------------hHHHHHH---HHHHHHHHHHHHHHcC----
Confidence 00 0011111 1124788899999998
Q ss_pred hhHHHHHHHHH-h---hHHHHhhhcC---CCCHHHHHHHHHHH---hCCCcEEEEeCCCCcceEEEEEcCCchHHHHHHH
Q 019635 232 DKLKKLGDLMN-D---SHHSCSVLYE---CSCPELEELVNVCR---NNGALGARLTGAGWGGCVVALVKESIDSQFILNL 301 (338)
Q Consensus 232 ~d~~~lg~lm~-~---sh~slr~~~~---vs~peld~l~e~a~---~~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l 301 (338)
|++.|+++|. + -|+.++..+. .-+|+++++++.+. +.|++|+.+||+| ||+++|++++.++++.+.|
T Consensus 233 -D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaG--Ptv~~l~~~~~a~~v~~~l 309 (332)
T 3qt5_A 233 -DFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG--PNVKVLVEKKNKQAVMEQF 309 (332)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCC--CcEEEEECHHHHHHHHHHH
Confidence 8999999997 4 4566665411 13799999998885 7899999999998 9999999876677777777
Q ss_pred HHHHHhcccCCccccCCCCceeEEEe-ecCCceeeec
Q 019635 302 KEQFYQSRIDRGVINNNDLGLYVFAS-KPSSGAAKFK 337 (338)
Q Consensus 302 ~~~y~~~~~~~~~~~~~~~~~~~~~~-~p~~Ga~v~~ 337 (338)
++.|. +..++++ +|+.|+++++
T Consensus 310 ~~~~~--------------~~~~~v~~~~g~G~~~~~ 332 (332)
T 3qt5_A 310 LKVFD--------------ESKIIASDIISSGVEIIK 332 (332)
T ss_dssp HTTSC--------------GGGEEEEEBCSSCCEECC
T ss_pred HHhCC--------------CceEEEeccccCCcEecC
Confidence 65442 3467788 9999999864
No 21
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.71 E-value=9.7e-16 Score=151.04 Aligned_cols=190 Identities=14% Similarity=0.181 Sum_probs=129.5
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecC------CC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFN------PI 72 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~------~~ 72 (338)
.||++.+.++||.++||+||||..+|++.|+++++|+++++ +++++| |.+ .++.. ..
T Consensus 122 ~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~Gs~~~sl~G--G~v-~~~~G~~~~~~~~ 198 (416)
T 1fi4_A 122 WKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFG--GYV-AWEMGKAEDGHDS 198 (416)
T ss_dssp SCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGGGGSS--SEE-EEECCSCTTCTTC
T ss_pred CcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCCchheEeeC--CcE-EEecCCcCCCCCc
Confidence 57999999999999999999999999999999999999886 556776 444 45432 12
Q ss_pred ceEEeeCC---CCce--EEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhh
Q 019635 73 RTTDVQLP---AGGT--FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 147 (338)
Q Consensus 73 ~~~~v~lp---~~~~--~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~ 147 (338)
...+++.+ +++. +++++++. +.......|+.+ +...
T Consensus 199 ~~~~l~~~~~~p~l~~vvlv~~~~~---~~~sst~~~~~~----------~~~~-------------------------- 239 (416)
T 1fi4_A 199 MAVQIADSSDWPQMKACVLVVSDIK---KDVSSTQGMQLT----------VATS-------------------------- 239 (416)
T ss_dssp EEEEEECGGGSTTEEEEEEEECCCS---CCCCHHHHHHHH----------HHHC--------------------------
T ss_pred eeEEecCccCCcccEEEEEEECCCC---CCcCCHHHHHHH----------hhcC--------------------------
Confidence 34566542 3565 45555543 222221222211 1110
Q ss_pred ccCCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019635 148 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~ 227 (338)
. ...+++.|+. ..|+..++.||.++
T Consensus 240 -----------------------------------~------------------~~~~~~~~i~--~~~~~~l~~AL~~g 264 (416)
T 1fi4_A 240 -----------------------------------E------------------LFKERIEHVV--PKRFEVMRKAIVEK 264 (416)
T ss_dssp -----------------------------------S------------------HHHHHHHTHH--HHHHHHHHHHHHTT
T ss_pred -----------------------------------H------------------hHHHHHHHHH--HHHHHHHHHHHHcC
Confidence 0 0112223322 36888899999998
Q ss_pred CCChhhHHHHHHHHHhhHHHHhhhcC-------CCCHHHHHHHHHHHh----CC-CcEEEEeCCCCcceEEEEEcCCchH
Q 019635 228 LSEEDKLKKLGDLMNDSHHSCSVLYE-------CSCPELEELVNVCRN----NG-ALGARLTGAGWGGCVVALVKESIDS 295 (338)
Q Consensus 228 ~~~~~d~~~lg~lm~~sh~slr~~~~-------vs~peld~l~e~a~~----~G-a~GarisGaG~GG~viaL~~~~~~~ 295 (338)
|++.||++|.++|..+.+.+. .-.|....+++.+.+ .| +.++.+|||| +|+++|++++..+
T Consensus 265 -----D~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~al~~~~~~~ 337 (416)
T 1fi4_A 265 -----DFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAVLYYLAENES 337 (416)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEEEEEEGGGHH
T ss_pred -----CHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEEEEECHHHHH
Confidence 899999999766555544222 235677888776544 38 7889999999 8999999877778
Q ss_pred HHHHHHHHHHH
Q 019635 296 QFILNLKEQFY 306 (338)
Q Consensus 296 ~~~~~l~~~y~ 306 (338)
++.+.|++.|.
T Consensus 338 ~v~~~l~~~~~ 348 (416)
T 1fi4_A 338 KLFAFIYKLFG 348 (416)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcc
Confidence 89999988886
No 22
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.68 E-value=1.1e-16 Score=148.95 Aligned_cols=75 Identities=15% Similarity=0.008 Sum_probs=61.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------eeeeeccCCcEEEeecCCCceEEeeCC
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------AISIMAKSGFAELIDFNPIRTTDVQLP 80 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------~as~~g~~g~~l~id~~~~~~~~v~lp 80 (338)
.|+++.+.++||.|+|||||||..+|++.|++++++.++ . .++++| .+.+.....-.+++++ +
T Consensus 75 ~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l-~l~~la~~~g~dv~~~~~G---g~~~~~g~g~~~~~l~-~ 149 (275)
T 1uek_A 75 GGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV-DLFALARTLGADVPFFLLG---RGAEARGVGERLKPLA-L 149 (275)
T ss_dssp CEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC-CHHHHHHHHCTTHHHHHHC---SEEEEETTTTEEEEEC-C
T ss_pred CCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHhCCChHHHhcC---CeEEEEccCceeEEcc-C
Confidence 489999999999999999999999999999999999876 4 445565 3445554555678888 6
Q ss_pred CCceEEEEecCC
Q 019635 81 AGGTFVVAHSLA 92 (338)
Q Consensus 81 ~~~~~vv~~s~v 92 (338)
+++.++++++++
T Consensus 150 ~~~~~vl~~p~~ 161 (275)
T 1uek_A 150 PPVPAVVFFPGL 161 (275)
T ss_dssp CCEEEEEEECCC
T ss_pred CCcEEEEEeCCC
Confidence 689999999987
No 23
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.65 E-value=1.8e-16 Score=147.34 Aligned_cols=77 Identities=8% Similarity=0.052 Sum_probs=62.9
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.|+++.+.++||.|+|||||||..+|++.|++++++.++++ .++++| .+.+.....-.+++++
T Consensus 80 ~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~dv~~~~~g---g~~~~~g~g~~~~~l~ 156 (271)
T 2v8p_A 80 INYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPFFLLG---KSAIGRGKGEVLEPVE 156 (271)
T ss_dssp CCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTGGGGTC---SEEEEETTTTEEEECC
T ss_pred CCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHHhcC---CeEEEEEcCCEEEEcc
Confidence 48999999999999999999999999999999999999876 445554 3444444444677888
Q ss_pred CCCCceEEEEecCC
Q 019635 79 LPAGGTFVVAHSLA 92 (338)
Q Consensus 79 lp~~~~~vv~~s~v 92 (338)
+|.++.++++++++
T Consensus 157 ~~~~~~~vl~~p~~ 170 (271)
T 2v8p_A 157 TEISGKITLVIPQV 170 (271)
T ss_dssp CCCCSEEEEEECSS
T ss_pred CCCCcEEEEEeCCC
Confidence 55489999999987
No 24
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.62 E-value=1.2e-13 Score=134.59 Aligned_cols=190 Identities=15% Similarity=0.180 Sum_probs=124.7
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc------------eeeeeccCCcEEEeecC------CCce
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK------------AISIMAKSGFAELIDFN------PIRT 74 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~------------~as~~g~~g~~l~id~~------~~~~ 74 (338)
.|+++.+.++||.++||+||||..+|.+.|+++++|++ .. ++|++| |.++ ++.. ....
T Consensus 96 ~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~-~eL~~lA~~g~Gsva~s~~G--G~v~-~~~g~~~~~~~~~~ 171 (380)
T 2hke_A 96 KKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST-TNVSMLARLGSGSACRSAFG--GFVI-WNKGEKPDGSDCVA 171 (380)
T ss_dssp CEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS-SCHHHHHHHHCGGGGGGGSS--SEEE-EECCSCTTSTTCEE
T ss_pred CCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH-HHHHHHHhhcCcceeeehhC--CeEE-EecCCCCCCCcceE
Confidence 47899999999999999999999999999999999986 32 556776 4444 4432 1245
Q ss_pred EEeeCC---CCceEEEE--ecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhcc
Q 019635 75 TDVQLP---AGGTFVVA--HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 149 (338)
Q Consensus 75 ~~v~lp---~~~~~vv~--~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~ 149 (338)
.+++.+ +++.++++ +... +..... ..+.+++... ..
T Consensus 172 ~~l~~~~~~p~l~~~vlv~~~~~---~~~sst----------~~~r~~~~~~------------~~-------------- 212 (380)
T 2hke_A 172 TQFVDETHWPEIQVMCAVLKGAQ---KDVSST----------KGMQQSLKTS------------PL-------------- 212 (380)
T ss_dssp EEEECTTSCTTEEEEEEECCCCS---CCCCHH----------HHHHHHHHHC------------TT--------------
T ss_pred EeccCcccCCcceEEEEEecCCC---CCCCCH----------HHHHHHHhcC------------hh--------------
Confidence 666653 34554443 4322 111110 1111222110 00
Q ss_pred CCCCChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019635 150 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~ 229 (338)
...++.++ ...++..++.+|.++
T Consensus 213 -----------------------------------------------------~~~~~~~~--~~~~~~~l~~Al~~~-- 235 (380)
T 2hke_A 213 -----------------------------------------------------MKKRISET--VPERMKIASRAIKAR-- 235 (380)
T ss_dssp -----------------------------------------------------HHHHHHTH--HHHHHHHHHHHHHHT--
T ss_pred -----------------------------------------------------HHHHHHHH--HHHHHHHHHHHHHcC--
Confidence 00011111 246778899999998
Q ss_pred ChhhHHHHHHHHHh----hHHHHhhh--c-CCCCHHHHHHHHHHHhC----C-CcEEEEeCCCCcceEEEEEcCCchHHH
Q 019635 230 EEDKLKKLGDLMND----SHHSCSVL--Y-ECSCPELEELVNVCRNN----G-ALGARLTGAGWGGCVVALVKESIDSQF 297 (338)
Q Consensus 230 ~~~d~~~lg~lm~~----sh~slr~~--~-~vs~peld~l~e~a~~~----G-a~GarisGaG~GG~viaL~~~~~~~~~ 297 (338)
|++.|+++|.+ -|+.+++. + ..-.|+..++++.+.+. | +.++.+|||| +++++|++++..+++
T Consensus 236 ---D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv~~l~~~~~~~~v 310 (380)
T 2hke_A 236 ---DFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANCFLFVLKEDLPEA 310 (380)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEEEEEGGGHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcEEEEECHHHHHHH
Confidence 89999999954 35444433 1 22478888888886653 9 8889999998 889999987778888
Q ss_pred HHHHHHHHHh
Q 019635 298 ILNLKEQFYQ 307 (338)
Q Consensus 298 ~~~l~~~y~~ 307 (338)
.+.|++.|..
T Consensus 311 ~~~l~~~~~~ 320 (380)
T 2hke_A 311 VAMLMEHFPT 320 (380)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhccc
Confidence 8888877753
No 25
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.59 E-value=7.2e-14 Score=133.16 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=124.8
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-cc--------------eeeeeccCCcEEEeecCCCc
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSST----VALMAAFGVEV-PK--------------AISIMAKSGFAELIDFNPIR 73 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~----~Al~~~~~~~l-s~--------------~as~~g~~g~~l~id~~~~~ 73 (338)
.|+.+.+.++||.++||+||||-.+|.+ .|+++++|+++ |+ +.|++| |. +.+... .
T Consensus 91 ~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gsGsaa~si~G--G~-v~~~~g--~ 165 (323)
T 3lto_A 91 GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSGSSCRSFYA--PW-ALWTGD--K 165 (323)
T ss_dssp CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTCGGGGGGGSC--SE-EEEETT--E
T ss_pred CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCcchhhhC--CE-EEEecC--c
Confidence 4899999999999999999999999999 99999999999 86 567776 44 333222 3
Q ss_pred eEEee-CCCCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCC
Q 019635 74 TTDVQ-LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGS 152 (338)
Q Consensus 74 ~~~v~-lp~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~ 152 (338)
.+++. .++++.++++....+..+..+ ..+.+.+.. ..+
T Consensus 166 ~~~l~~~~~~l~~~v~vi~~~~~~vsT------------~~~~~~l~~-------------~~~---------------- 204 (323)
T 3lto_A 166 VSAIDLPYKDLLHQVIVISSQEKEIPS------------RVAHKLVKT-------------SPF---------------- 204 (323)
T ss_dssp EEECCCSCCSCEEEEEECCCCTTCCCH------------HHHHHHGGG-------------STT----------------
T ss_pred EEEccCCCCCCeEEEEEECCCCCCCCC------------HHHHhhccc-------------Chh----------------
Confidence 34442 224566644432111001111 112221110 000
Q ss_pred CChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 019635 153 SDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 232 (338)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~ 232 (338)
.+ .|.. ....++..++++|.++
T Consensus 205 ----------------------------~~----------------------~~~~---~~~~~~~~l~~AL~~g----- 226 (323)
T 3lto_A 205 ----------------------------YE----------------------TRSE---RAEANLKLLLNAFENK----- 226 (323)
T ss_dssp ----------------------------TT----------------------THHH---HHHHHHHHHHHHHHTT-----
T ss_pred ----------------------------HH----------------------HHHH---HhHHHHHHHHHHHHcC-----
Confidence 00 0111 1347888999999998
Q ss_pred hHHHHHHHHHh----hHHHHhhh--c-CCCCHHHHHHHHHHHh----CCCcEEEEeCCCCcceEEEEEcCCchHHHHHHH
Q 019635 233 KLKKLGDLMND----SHHSCSVL--Y-ECSCPELEELVNVCRN----NGALGARLTGAGWGGCVVALVKESIDSQFILNL 301 (338)
Q Consensus 233 d~~~lg~lm~~----sh~slr~~--~-~vs~peld~l~e~a~~----~Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l 301 (338)
|++.|+++|.. -|+.+++. | ..-.|+..++++.+.+ .|++|+.++||| +++++|++++..+++.+.|
T Consensus 227 D~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~~l~~~~~~~~v~~~l 304 (323)
T 3lto_A 227 DWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVHLLYRSDQTDLARQFK 304 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEEEEECGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeEEEEecccHHHHHHHH
Confidence 89999998653 36656652 1 1227888877777655 689999999999 7799999888889999999
Q ss_pred HHHHH
Q 019635 302 KEQFY 306 (338)
Q Consensus 302 ~~~y~ 306 (338)
++.+.
T Consensus 305 ~~~~~ 309 (323)
T 3lto_A 305 SDHLV 309 (323)
T ss_dssp HHHTT
T ss_pred HHHhH
Confidence 77653
No 26
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.54 E-value=4.9e-13 Score=130.66 Aligned_cols=194 Identities=16% Similarity=0.179 Sum_probs=128.9
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCC--Ccc---------eeeeeccCCcEEEeecC-----CCceEE
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVE--VPK---------AISIMAKSGFAELIDFN-----PIRTTD 76 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~--ls~---------~as~~g~~g~~l~id~~-----~~~~~~ 76 (338)
.|+.+.+.++||.++||+||||..+|.+.|++.+++++ +.+ +.|++| |.++.-... .....+
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l~~el~~lA~~~sGs~~~s~~G--G~v~w~~~~~~d~~ds~a~~ 199 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVEGDLSEVARRGSGSACRSLYG--GFVEWQMGEQADGKDSIARQ 199 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTCCSCCHHHHHHHCGGGGGGGSS--SEEEECCCSCTTCTTCCEEE
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCChHHHHHHHHHhCCCcchHhhC--CEEEEEeccCCCCCceEEEE
Confidence 47999999999999999999999999999999999873 222 677887 444433321 123455
Q ss_pred eeCC---CCceEEEEecCCccchhcccchhhhHHHHHHHHHHHHHHHHhCCCchhhhcccccccchhhhhhhhhccCCCC
Q 019635 77 VQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSS 153 (338)
Q Consensus 77 v~lp---~~~~~vv~~s~v~~~k~~~~~~~yn~R~~ec~~A~~iL~~~~~~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~ 153 (338)
++.+ +++.++++...... |.... . ..+.+.+.+.
T Consensus 200 i~~~~~wp~L~ivvlv~~~~~-K~vsS--T--------~~mr~~l~ts-------------------------------- 236 (414)
T 3f0n_A 200 IAPEWHWPQLRILILVVSADK-KQTGS--T--------VGMQTSVETS-------------------------------- 236 (414)
T ss_dssp EECTTSCTTEEEEEEEESCCC--CCCH--H--------HHHHHHHHHC--------------------------------
T ss_pred cccccCCCCceEEEEEeCccc-cCCCc--h--------HHHHhhcccC--------------------------------
Confidence 6532 35777666532211 11100 0 0111111110
Q ss_pred ChHHHHHHhhhcCCCCHHHHHHHhchhhhhhhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 019635 154 DPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 233 (338)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~hv~~E~~rv~~~~~aL~~~~~~~~d 233 (338)
.+ ...|+.++ ...|+..++.||.++ |
T Consensus 237 -----------------------------~~------------------~~~~v~~~--~~~~~~~l~~AL~~g-----D 262 (414)
T 3f0n_A 237 -----------------------------TL------------------LKFRAESV--VPERMKEMTRCIQEQ-----D 262 (414)
T ss_dssp -----------------------------HH------------------HHHHHHHT--HHHHHHHHHHHHHTT-----C
T ss_pred -----------------------------cc------------------HHHHHHHH--HHHHHHHHHHHHHcC-----C
Confidence 00 11111110 247888999999998 8
Q ss_pred HHHHHHHHH-h---hHHHHhhh---cCCCCHHHHHHHHHHHhC-----CCcEEEEeCCCCcceEEEEEcCCchHHHHHHH
Q 019635 234 LKKLGDLMN-D---SHHSCSVL---YECSCPELEELVNVCRNN-----GALGARLTGAGWGGCVVALVKESIDSQFILNL 301 (338)
Q Consensus 234 ~~~lg~lm~-~---sh~slr~~---~~vs~peld~l~e~a~~~-----Ga~GarisGaG~GG~viaL~~~~~~~~~~~~l 301 (338)
++.||++|. + -|+.+++- +-.-+|+...+++.+.+. |++++.++||| +++++|+++++.+++.+.|
T Consensus 263 ~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAG--Pnv~vl~~~~~~~~v~~~l 340 (414)
T 3f0n_A 263 FQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAG--PNAVIFTLEDTVAEFVAAV 340 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCC--CCEEEEEecccHHHHHHHH
Confidence 999999865 4 47777762 112378888888877763 89999999999 7799999888899999999
Q ss_pred HHHHHh
Q 019635 302 KEQFYQ 307 (338)
Q Consensus 302 ~~~y~~ 307 (338)
++.|..
T Consensus 341 ~~~f~~ 346 (414)
T 3f0n_A 341 RHSFPP 346 (414)
T ss_dssp HHHSCC
T ss_pred HHhcCC
Confidence 877754
No 27
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.48 E-value=6.7e-14 Score=131.00 Aligned_cols=77 Identities=18% Similarity=0.133 Sum_probs=61.8
Q ss_pred cceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc--------------eeeeeccCCcEEEeecCCCceEEee
Q 019635 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------AISIMAKSGFAELIDFNPIRTTDVQ 78 (338)
Q Consensus 13 ~gf~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~--------------~as~~g~~g~~l~id~~~~~~~~v~ 78 (338)
.|+++.+.++||.|+|||||||..+|++.|++++++.++++ .++++| .+.+.....-..++++
T Consensus 88 ~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~dv~~~~~g---g~~~~~g~g~~~~~l~ 164 (283)
T 2ww4_A 88 SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRG---HAAFAEGVGEILTPVD 164 (283)
T ss_dssp CEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTHHHHHHT---BCEEEETTTTEEEECC
T ss_pred CceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHhhcC---CeEEEEecCccceEcC
Confidence 58999999999999999999999999999999999998876 445555 2444444555567777
Q ss_pred CCCCceEEEEecCCc
Q 019635 79 LPAGGTFVVAHSLAE 93 (338)
Q Consensus 79 lp~~~~~vv~~s~v~ 93 (338)
+| ++.+++++++++
T Consensus 165 ~~-~~~~vl~~p~~~ 178 (283)
T 2ww4_A 165 PP-EKWYLVAHPGVS 178 (283)
T ss_dssp CC-CCEEEEECCSCC
T ss_pred CC-CcEEEEEeCCCC
Confidence 76 688999999873
No 28
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=42.49 E-value=56 Score=25.19 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHhCCCcEEE---EeCCCC--cc-----------------eEEEEEcCCchHHHHHHHHHHHHh
Q 019635 256 CPELEELVNVCRNNGALGAR---LTGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQ 307 (338)
Q Consensus 256 ~peld~l~e~a~~~Ga~Gar---isGaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~y~~ 307 (338)
...++.++++..+.|+.|.. ..|-|- |. .+..+++++..+++++.+.+....
T Consensus 10 ~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 10 PEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 34578889988888876633 333332 12 578888888999999999987743
No 29
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=41.68 E-value=62 Score=25.38 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCcc-----eEEEEEcCCchHHHHHHHHHHHHhc
Q 019635 257 PELEELVNVCRNNGALGARLTGAGWGG-----CVVALVKESIDSQFILNLKEQFYQS 308 (338)
Q Consensus 257 peld~l~e~a~~~Ga~GarisGaG~GG-----~viaL~~~~~~~~~~~~l~~~y~~~ 308 (338)
..+|.+.++..+.|..|.+++-.|++| .+...++++..+++++.+.+.....
T Consensus 16 ~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 16 KDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 457888888889999998877655333 3455567789999999998877544
No 30
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=39.72 E-value=84 Score=23.96 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHhCCCcEEEE---eCCCC--cc-----------------eEEEEEcCCchHHHHHHHHHHHHhcccCCc
Q 019635 256 CPELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 313 (338)
Q Consensus 256 ~peld~l~e~a~~~Ga~Gari---sGaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~y~~~~~~~~ 313 (338)
...++.++++..+.|+.|..+ .|-|- |. .+..+++++..+++++.+.+.......
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~~--- 86 (112)
T 2eg2_A 10 PFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQTGRV--- 86 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcCCCC---
Confidence 345788888888888766433 33331 11 366677778899999999988743220
Q ss_pred cccCCCCceeEEEeecCC
Q 019635 314 VINNNDLGLYVFASKPSS 331 (338)
Q Consensus 314 ~~~~~~~~~~~~~~~p~~ 331 (338)
=+..+|++...+
T Consensus 87 ------GdGkiFV~pVe~ 98 (112)
T 2eg2_A 87 ------GDGKIFIIPVED 98 (112)
T ss_dssp ------TCCEEEEEECSC
T ss_pred ------CCEEEEEEEhHh
Confidence 124677766544
No 31
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=35.13 E-value=69 Score=24.86 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHhCCCcEEEE---eCCCC--cce-----------------EEEEEcCCchHHHHHHHHHHHHh
Q 019635 256 CPELEELVNVCRNNGALGARL---TGAGW--GGC-----------------VVALVKESIDSQFILNLKEQFYQ 307 (338)
Q Consensus 256 ~peld~l~e~a~~~Ga~Gari---sGaG~--GG~-----------------viaL~~~~~~~~~~~~l~~~y~~ 307 (338)
...++.++++..+.|+.|..+ .|-|- |.+ +..+++++.++++++.+.+....
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 12 PEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 345888999999988877533 23331 111 67777888999999999988743
No 32
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=34.19 E-value=1.2e+02 Score=23.15 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCcEEE---EeCCCC-cc------------------eEEEEEcCCchHHHHHHHHHHHHhcccCCcc
Q 019635 257 PELEELVNVCRNNGALGAR---LTGAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQSRIDRGV 314 (338)
Q Consensus 257 peld~l~e~a~~~Ga~Gar---isGaG~-GG------------------~viaL~~~~~~~~~~~~l~~~y~~~~~~~~~ 314 (338)
..++.++++..+.|+.|.. ..|-|- .| -+..+++++..+++++.+.+......
T Consensus 13 ~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~----- 87 (114)
T 3bzq_A 13 FTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGK----- 87 (114)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCCSS-----
T ss_pred HHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcCCC-----
Confidence 4578888888888876643 333332 12 36677788899999999998774322
Q ss_pred ccCCCCceeEEEeecCC
Q 019635 315 INNNDLGLYVFASKPSS 331 (338)
Q Consensus 315 ~~~~~~~~~~~~~~p~~ 331 (338)
.. +..+|++...+
T Consensus 88 -~G---dGkiFV~pVe~ 100 (114)
T 3bzq_A 88 -IG---DGKVWVSPVDT 100 (114)
T ss_dssp -TT---CCEEEEEEESC
T ss_pred -CC---CEEEEEEEhHH
Confidence 11 34577765544
No 33
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=30.57 E-value=1.3e+02 Score=22.83 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHhCCCcEEEE---eCCCC-cc------------------eEEEEEcCCchHHHHHHHHHHHHh
Q 019635 256 CPELEELVNVCRNNGALGARL---TGAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQ 307 (338)
Q Consensus 256 ~peld~l~e~a~~~Ga~Gari---sGaG~-GG------------------~viaL~~~~~~~~~~~~l~~~y~~ 307 (338)
...++.+.++..+.|+.|..+ .|-|- +| .+..+++++..+++++.+.+....
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 1hwu_A 10 PFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAART 83 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 345788889888888776433 34442 12 344556677899999999987743
No 34
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=29.22 E-value=3.2e+02 Score=27.63 Aligned_cols=37 Identities=32% Similarity=0.400 Sum_probs=28.3
Q ss_pred eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc
Q 019635 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK 53 (338)
Q Consensus 15 f~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~ 53 (338)
..+.|..+|=..-| |++.|.++|..+||..+ |++|..
T Consensus 429 ~tI~V~~~VLesDG-s~~~AsI~aa~lAL~dA-GIPl~~ 465 (630)
T 3u1k_A 429 FTIRVTSEVLESNG-SSSMASACGGSLALMDS-GVPISS 465 (630)
T ss_dssp SEEEEEEEEEECSS-CHHHHHHHHHHHHHHHT-TCCCSS
T ss_pred eEEEEEEEEEEcCC-CHHHHHHHHHHHHHHhC-CCCccc
Confidence 35777777776666 78888888888888887 787765
No 35
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=28.16 E-value=1.4e+02 Score=22.73 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHhCCCcEEEE---eCCCC--cc-----------------eEEEEEcCCchHHHHHHHHHHHHh
Q 019635 256 CPELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQ 307 (338)
Q Consensus 256 ~peld~l~e~a~~~Ga~Gari---sGaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~y~~ 307 (338)
...++.++++..+.|+.|..+ .|-|- |. .+..+++++.++++++.+.+....
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~t 85 (114)
T 2gw8_A 12 PFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARS 85 (114)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 345788899888888766433 33332 11 345556777899999999887743
No 36
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=27.42 E-value=2.1e+02 Score=21.86 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHhCCCcEE---EEeCCCCcc-------------------eEEEEEcCCchHHHHHHHHHHHHhcccCCc
Q 019635 256 CPELEELVNVCRNNGALGA---RLTGAGWGG-------------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 313 (338)
Q Consensus 256 ~peld~l~e~a~~~Ga~Ga---risGaG~GG-------------------~viaL~~~~~~~~~~~~l~~~y~~~~~~~~ 313 (338)
...++.++++..+.|+.|. ...|-|-.. .+..+++++.++++++.+.+......
T Consensus 14 ~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~---- 89 (116)
T 2ns1_B 14 PFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGK---- 89 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcCCC----
Confidence 3457888888888887663 344444211 44555677889999999998775422
Q ss_pred cccCCCCceeEEEeecCC
Q 019635 314 VINNNDLGLYVFASKPSS 331 (338)
Q Consensus 314 ~~~~~~~~~~~~~~~p~~ 331 (338)
.. +..+|++...+
T Consensus 90 --~G---dGkiFV~pVe~ 102 (116)
T 2ns1_B 90 --IG---DGKIFVAELQR 102 (116)
T ss_dssp --TT---CCEEEEEEESC
T ss_pred --CC---CEEEEEEEhHH
Confidence 11 34577765544
No 37
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=27.09 E-value=1.8e+02 Score=23.20 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHhCCCcEEEE---eCCCCc-c-------------------eEEEEEcCCchHHHHHHHHHHHHh
Q 019635 256 CPELEELVNVCRNNGALGARL---TGAGWG-G-------------------CVVALVKESIDSQFILNLKEQFYQ 307 (338)
Q Consensus 256 ~peld~l~e~a~~~Ga~Gari---sGaG~G-G-------------------~viaL~~~~~~~~~~~~l~~~y~~ 307 (338)
...++.++++..+.|+.|..+ .|-|-. | .+..+++++.++++++.+.+....
T Consensus 22 ~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~t 96 (135)
T 2o66_A 22 PWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGART 96 (135)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 345788888888888777433 444421 1 366677788899999999988754
No 38
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=26.10 E-value=53 Score=25.63 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHhCCCcEEEE
Q 019635 256 CPELEELVNVCRNNGALGARL 276 (338)
Q Consensus 256 ~peld~l~e~a~~~Ga~Gari 276 (338)
-|-+++|++.+++.|+-|+.+
T Consensus 29 ~pL~~~Iv~~~~~~GiaGaTV 49 (114)
T 1o51_A 29 KPLFEYLVKRAYELGMKGVTV 49 (114)
T ss_dssp EEHHHHHHHHHHHTTCSCCEE
T ss_pred eEHHHHHHHHHHHCCCCeEEE
Confidence 467899999999999888765
No 39
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=25.85 E-value=1.5e+02 Score=23.14 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCcEEEE---eCCCC--cc-----------------eEEEEEcCCchHHHHHHHHHHHH
Q 019635 257 PELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 257 peld~l~e~a~~~Ga~Gari---sGaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
..++.++++..+.|+.|..+ .|-|- |. .+..+++++.++++++.+.+...
T Consensus 11 ~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~ 82 (118)
T 3t9z_A 11 EKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSAR 82 (118)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhc
Confidence 45788899888888877544 34442 21 24556677889999999988764
No 40
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=24.71 E-value=1.5e+02 Score=23.14 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCcEEEE---eCCCC--cc-----------------eEEEEEcCCchHHHHHHHHHHHH
Q 019635 257 PELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 257 peld~l~e~a~~~Ga~Gari---sGaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
..++.++++..+.|+.|..+ .|-|- |. .+..+++++.++++++.+.+...
T Consensus 11 ~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~ 82 (119)
T 3ncq_A 11 EKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAF 82 (119)
T ss_dssp TTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhc
Confidence 45788888888888877443 34442 21 25566677889999999988664
No 41
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=22.88 E-value=1.3e+02 Score=23.55 Aligned_cols=51 Identities=25% Similarity=0.434 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHhCCCcEEEEe---CCCCcc-----------eEEEEEcCCchHHHHHHHHHHHH
Q 019635 256 CPELEELVNVCRNNGALGARLT---GAGWGG-----------CVVALVKESIDSQFILNLKEQFY 306 (338)
Q Consensus 256 ~peld~l~e~a~~~Ga~Garis---GaG~GG-----------~viaL~~~~~~~~~~~~l~~~y~ 306 (338)
.+.++++++++.+.|+-|..++ |-|-.+ -+..+++++.++++++.+.+...
T Consensus 34 ~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~ 98 (119)
T 2cz4_A 34 SLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYF 98 (119)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhc
Confidence 4678999999999887775443 444211 35566666789999999986554
No 42
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=22.13 E-value=5.1e+02 Score=25.69 Aligned_cols=37 Identities=35% Similarity=0.436 Sum_probs=27.5
Q ss_pred eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCcc
Q 019635 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK 53 (338)
Q Consensus 15 f~~~i~s~vP~gsGLsSSAAl~va~~~Al~~~~~~~ls~ 53 (338)
..+.|..+|=..-| |++.|.++|..+||..+ |++|..
T Consensus 423 ~tI~V~~~VLesDG-s~~~AsI~aa~lAL~DA-GvPm~~ 459 (549)
T 3gme_A 423 YTVRVVSEITESNG-SSSMASVCGASLALMDA-GVPIKA 459 (549)
T ss_dssp CEEEEEEEEEECSS-CHHHHHHHHHHHHHHHH-TCCCSS
T ss_pred eEEEEEEEEEECCC-CHHHHHHHHHHHHHHhC-CCCccc
Confidence 45777777766555 67778888888898888 787765
Done!