RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019635
(338 letters)
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 254 bits (651), Expect = 2e-81
Identities = 120/335 (35%), Positives = 173/335 (51%), Gaps = 42/335 (12%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------------------AISIMAKS 61
SGLSSS+A VC + + + G + K +IS +A+
Sbjct: 160 PSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEE 219
Query: 62 GFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 121
G A+LI+F+P+R TDV+LP+G FV+A+S E KA A S++N RV+ECRL A +LA
Sbjct: 220 GTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKY 277
Query: 122 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKL 181
++ KV L +V+ + + ++ L EPY +I + L
Sbjct: 278 KSLQWD----KVLRLEEVQAKL-----GISLEEMLLVTEDALHPEPYNPEEICRCLGISL 328
Query: 182 TSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLM 241
+ S +KL+QRA HVYSEA RV FK + E+ ++ LG+LM
Sbjct: 329 EELRTQILSPNTQD--VLIFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELM 384
Query: 242 NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNL 301
N SH SC +YECSCPEL++LV++CR GA G+RLTGAGWGGC V++V F+ N+
Sbjct: 385 NQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANV 444
Query: 302 KEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 336
+ +YQ R + +FA+KP GA
Sbjct: 445 HKAYYQ----RSDGSLAPEKQSLFATKPGGGALVL 475
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 218 bits (556), Expect = 4e-67
Identities = 93/364 (25%), Positives = 149/364 (40%), Gaps = 53/364 (14%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFG-------------------VEVP-----KAISIMAK 60
G GLSS+ + V V +A S+ +
Sbjct: 158 TGGGLSSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGE 217
Query: 61 SGFAELIDFNP-IRTTDVQLP----AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTA 115
A ++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A
Sbjct: 218 EDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAA 277
Query: 116 IVLAIKLGMK--PQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEF----------L 163
LA + + + S + + + + +A + P L
Sbjct: 278 NALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQL 337
Query: 164 RKEPYTALDIEKITEEKLTSIFANSSSSL-----DVLNAAKQYKLHQRAAHVYSEAKRVH 218
+E ++ E T++ + + KL+QRA HVYSE+ RV
Sbjct: 338 VEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVL 397
Query: 219 AFKDTVSSN--LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARL 276
++S ++ED G LMN+S SC LYECSC E ++ ++ NG+ G+RL
Sbjct: 398 KALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRL 457
Query: 277 TGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 333
TGAGWGGC + LV + Q L E+FY R + +L + SKP+ G
Sbjct: 458 TGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLT--DEELKDAIIVSKPALGT 515
Query: 334 AKFK 337
++
Sbjct: 516 CLYE 519
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 153 bits (389), Expect = 2e-43
Identities = 67/340 (19%), Positives = 107/340 (31%), Gaps = 109/340 (32%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAK 60
SGLSSS + V L F + VP+ +
Sbjct: 152 TASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGE 211
Query: 61 SGFAELIDFNPIRTTDVQLPAGGTFVVA------HSLAESLKAITAASNYNNRVVECRLT 114
A +D N ++ V + +V +L ES YN R E R
Sbjct: 212 VKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKPRALTES--------KYNERFAETREA 263
Query: 115 AIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIE 174
+ +L +++L ++ S++ A + + E
Sbjct: 264 LKRMQTRLD---------IQSLGEL------------SNEEFDANTDLIGDET------- 295
Query: 175 KITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKL 234
L +RA H E R + + L
Sbjct: 296 ----------------------------LIKRARHAVYENNRTKIAQK----AFVAGN-L 322
Query: 235 KKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESI 293
K G+L+N SH S YE + EL+ L + G LGAR+TGAG+GGC +ALV
Sbjct: 323 TKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDN 382
Query: 294 DSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 333
S F + + + + + ++ SG+
Sbjct: 383 VSAFRKAVGQVYEE---------VVGYPASFYVAQIGSGS 413
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 149 bits (378), Expect = 2e-42
Identities = 54/333 (16%), Positives = 102/333 (30%), Gaps = 106/333 (31%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKA------------------------ISIMAK 60
LG+GLSSS +F L + +++ + +
Sbjct: 98 LGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGR 157
Query: 61 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 120
G +D + + + P + +V ++ ++ A+S Y R + +L
Sbjct: 158 EGNVIFLDTHTLDYEYIPFPKDVSILVFYT---GVRRELASSEYAERKHIAEESLKIL-- 212
Query: 121 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEK 180
+ +V ++ K+
Sbjct: 213 -----------GKGSSKEV-----------------------------REGELSKLPPL- 231
Query: 181 LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 240
+ ++ E RV +D +E ++++G +
Sbjct: 232 ----------------------HRKFFGYIVRENARVLEVRD-----ALKEGNVEEVGKI 264
Query: 241 MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 300
+ +H + YE SC EL+ V GA GARLTGAG+GG +ALV +
Sbjct: 265 LTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEE 324
Query: 301 LKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 333
+ ++ + R F +PS G
Sbjct: 325 ILREYLK----RFPWKAR-----HFIVEPSDGV 348
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 142 bits (361), Expect = 1e-39
Identities = 73/340 (21%), Positives = 111/340 (32%), Gaps = 118/340 (34%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKA------------------------ISIMAK 60
LG GLSSS + ++ L A IS+M +
Sbjct: 142 LGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQ 201
Query: 61 SGFAELIDFNPIRTTDVQLPAGG-TFVVA-----HSLAESLKAITAASNYNNRVVECRLT 114
G A LID + T+ V L ++ HSLA S Y R +C
Sbjct: 202 KGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLASS--------EYPVRRRQCEEV 253
Query: 115 AIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIE 174
A ++L +V
Sbjct: 254 A-------------RALGKESLREV----------------------------------- 265
Query: 175 KITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKL 234
E+L + D+++ + +RA HV E +R L D
Sbjct: 266 --QLEELEAA-------RDLVSK----EGFRRARHVVGEIRRTAQAAA----ALRRGD-Y 307
Query: 235 KKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESI 293
+ G LM +SH S YE SCPEL++LV G G+R+TG G+GGC V L++ S
Sbjct: 308 RAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASA 367
Query: 294 DSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 333
+ +++E + + S+ + GA
Sbjct: 368 APHAMRHIQEHYG-------------GTATFYLSQAADGA 394
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 103 bits (259), Expect = 1e-25
Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 162 FLRKEPYTALDIEKITEEKLTS--IFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA 219
++ + + E K I + + ++ E +V
Sbjct: 171 EIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKV-- 228
Query: 220 FKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGA 279
+ L ++ + G LM +H S P+L+ +V++ G GA+LTGA
Sbjct: 229 ----IDEALKIKN-KEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFG-FGAKLTGA 281
Query: 280 GWGGCVVALVKESIDSQFILNLKEQFYQ 307
G GGCV+ LV E + + + L ++ +
Sbjct: 282 GGGGCVIILVNEEKEKELLKELNKEDVR 309
Score = 33.8 bits (78), Expect = 0.064
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 26/148 (17%)
Query: 7 VIITKFQLFNHINSLFFNL--------GSGLSSSTAFVCSSTVALMAAFGVEVPKAISIM 58
I N F + GL SS + + A+ + E+ +
Sbjct: 84 AIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDD--EI 141
Query: 59 AKSGF-AELIDFNPIRTTDVQLPAGG--TFVVAHSLA---ESLKAITAASNYNNRVVECR 112
AK G+ E +Q A T + + ++ K + + C+
Sbjct: 142 AKLGYMVEKE---------IQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCK 192
Query: 113 LTAIVLAIKLGMKPQEAISKVKTLSDVE 140
IV A K K E +++V + + +
Sbjct: 193 -FLIVYAEKRKKKTAELVNEVAKIENKD 219
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 101 bits (254), Expect = 5e-25
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 194 VLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE 253
V + K + Q +HV K V D + + L D+ N+ H L
Sbjct: 191 VHDVHKLCEDPQYMSHVKHIGKLVLRASD----VIEHHK-FEALADIFNECHADLKAL-T 244
Query: 254 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 304
S ++E+L+ + + NGA+ +LTGAG GG ++ L K+ ++ I+ E+
Sbjct: 245 VSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEK 295
Score = 33.2 bits (76), Expect = 0.099
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKA 54
GL SS A + A G + K
Sbjct: 97 PSRGLGSSAAVAVAFVRASYDFLGKSLTKE 126
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 99.0 bits (247), Expect = 7e-24
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 24/139 (17%)
Query: 196 NAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECS 255
+ +L+ H+ S+A+ L + D L++LG LMN +H C + + S
Sbjct: 215 QPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQRLGQLMNANHDLCRQI-DVS 262
Query: 256 CPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN-LKEQFYQSRIDRGV 314
C ELE +V CR GALGA+L+G G GG VAL S I+ LK + +++
Sbjct: 263 CRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPEAK----- 317
Query: 315 INNNDLGLYVFASKPSSGA 333
++ + +PS+ +
Sbjct: 318 ------FIWRYTVQPSAAS 330
Score = 34.3 bits (79), Expect = 0.041
Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 25/118 (21%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPK------AISI--------------MAKSGFA 64
SG+ +S + V + + AL + + + A A G
Sbjct: 108 PSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGGL 167
Query: 65 ELIDFNPIRT--TDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 120
L ++ + VV + A TA + ++ + +
Sbjct: 168 ILYRRQNGKSVFKPIAFQQRLYLVVVGTGI---NASTAKVVNDVHKMKQQQPVQFKRL 222
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 97.1 bits (242), Expect = 2e-23
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 194 VLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE 253
+ + K H E + +S + LG +++ +H
Sbjct: 179 IQVVQNKGKDALPFLHALGE--LTQQAEIAISQK-----DAEGLGQILSQAHLHLKE-IG 230
Query: 254 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 309
S E + LV ++GALGA+++G G GGC++ALV +Q + E+ +
Sbjct: 231 VSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGAVQ 286
Score = 33.1 bits (76), Expect = 0.11
Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 23/87 (26%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKAISIMAKSGF-AE------------------ 65
G+ SS A ++ A+ + ++P ++ AE
Sbjct: 85 EKRGMGSSAAISIAAIRAVFDYYQADLPHD--VLEILVNRAEMIAHMNPSGLDAKTCLSD 142
Query: 66 --LIDFNPIRTTDVQLPAGGTFVVAHS 90
+ + T++++ V+A +
Sbjct: 143 QPIRFIKNVGFTELEMDLSAYLVIADT 169
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 85.7 bits (212), Expect = 4e-19
Identities = 19/121 (15%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 187 NSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV--SSNLSEEDKLKKLGDLMNDS 244
S SS ++N K+ + + +H K + + + + + ++ +
Sbjct: 206 RSRSSAAIINEQKKNTSEGNQTAI----EAMHKIKQSAIDTKLALLKGDVGEFARILGEG 261
Query: 245 HHS-CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 303
+ + + P ++E +V GA+ +++GAG GG ++ +V+ + + + L
Sbjct: 262 WENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNN 321
Query: 304 Q 304
Sbjct: 322 L 322
Score = 31.4 bits (71), Expect = 0.44
Identities = 11/60 (18%), Positives = 17/60 (28%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKAISIMAKSGFAELIDFNPIRTTDVQLPAGGTF 85
GSGL +S+ V A + + + + D A G F
Sbjct: 110 GSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGF 169
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 74.5 bits (182), Expect = 4e-15
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 230 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 289
++ L +LM+ + H + L L++L V +G L ++LTGAG GGC + L+
Sbjct: 287 VPEQYLVLEELMDMNQHHLNAL-GVGHASLDQLCQVTAAHG-LHSKLTGAGGGGCGITLL 344
Query: 290 KESIDSQFILNLKEQF 305
K ++ + K+
Sbjct: 345 KPGLERAKVEAAKQAL 360
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 7e-12
Identities = 64/418 (15%), Positives = 121/418 (28%), Gaps = 121/418 (28%)
Query: 9 ITKFQLFNHINSLFFNL------------GSGLSSSTAFVCSS-TVALMAAFGV------ 49
+++ Q + + L GSG + VC S V F +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 50 --EVPKAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNN- 106
P+ + M + ID N +D + + HS+ L+ + + Y N
Sbjct: 191 NCNSPETVLEMLQK-LLYQIDPNWTSRSD---HSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 107 ----------RVVE-----CR---------LTAIVLAIKLGMKPQEAISKVKTLSDVEGL 142
+ C+ +T + A + S T +V+ L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 143 CVAFACKNGSSDPVFAVK----------EFLRKEPYTALDIEKITEEKLTSIFANSSSSL 192
+ + P + E +R T + + + +KLT+I SSL
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---ESSL 363
Query: 193 DVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS---SNLSEED------KLKKLGDLMND 243
+VL A+ K+ R + V+ + H +S ++ + D KL K +
Sbjct: 364 NVLEPAEYRKMFDRLS-VFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 244 SH------HSCSVLYECSCPELEEL----VN-------VCRNNGA-----------LGAR 275
S + + L V+ ++ +G
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 276 LTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI--------DRGVINN--NDLGLY 323
L + ++ L+ + F + +I G I N L Y
Sbjct: 481 LKNIEHPE------RMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Score = 34.8 bits (79), Expect = 0.042
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 171 LDIEKITEEKL---TSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD---TV 224
LD + E+K+ ++ + S S L+ L K YK + E + V+A D +
Sbjct: 498 LDFRFL-EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKI 555
Query: 225 SSNL--SEEDKLKKLGDLMNDSHHSCSVLYE 253
NL S+ L ++ LM + ++E
Sbjct: 556 EENLICSKYTDLLRIA-LMAED----EAIFE 581
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 64.3 bits (156), Expect = 9e-12
Identities = 38/282 (13%), Positives = 73/282 (25%), Gaps = 63/282 (22%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKAISIMAKSGFAELIDFNPIRTTDVQLPAGGT 84
GL SS A + ALM F E+ + + L+ VQ
Sbjct: 113 AKYGLGSSAAATVAVINALMTKFYPEISML-KKFKLAALSHLV---------VQGNGSCG 162
Query: 85 FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 144
+ + I + V + P I ++ V
Sbjct: 163 DIAS---CMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP--TFSV 217
Query: 145 AFACKNGSS-DPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 203
+ S+ V + F +++ K + LT
Sbjct: 218 GWTGTPVSTGKLVSQIHAFKQEDS-------KNYQHFLTRN------------------- 251
Query: 204 HQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHH-----SCSVLYECSCPE 258
+ + +D + L + ++
Sbjct: 252 ----------NEIMKQIIQ----AFHTKD-EELLYSSIKENRRILQELGTKAGVNIETSL 296
Query: 259 LEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 300
L+EL + N G + +G+G G C +A K ++ ++N
Sbjct: 297 LKELADSAENMGG-AGKSSGSGGGDCGIAFSKTKELAEKLVN 337
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 59.2 bits (143), Expect = 4e-10
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 230 EEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 288
E+ K +K+ + + + L + P L +L ++ A A+ +GAG G C +AL
Sbjct: 246 EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIAL 304
Query: 289 VKESIDSQFILN-LK----EQFYQSRIDR 312
++ ++ + N E YQ RI
Sbjct: 305 SFDAQSTKTLKNRWADLGIELLYQERIGH 333
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 5e-08
Identities = 48/246 (19%), Positives = 83/246 (33%), Gaps = 94/246 (38%)
Query: 13 QLFNHIN----SLFFNLGSGLSSSTAFVCSST-VALMAAFGVEVPKAI-SIMAKSGFAEL 66
++F IN S F GL S+T F T AL +E A + G
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQF----TQPALTL---MEK--AAFEDLKSKGL--- 1752
Query: 67 IDFNPIRTTDVQLPAGGTFVVA-HSLAE-SLKAITAASNYNNRVVECRLTAIVL----AI 120
+ A A HSL E + A+ + ++ V+ +
Sbjct: 1753 ----------IPADA----TFAGHSLGEYA--ALASLAD-------------VMSIESLV 1783
Query: 121 KL----GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVF---AVKEFLRKEPYTALDI 173
++ GM Q A+ + + G+ A G F A++ + + +
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMI---AINPGRVAASFSQEALQYVVER-------V 1833
Query: 174 EKITEEKLTSIFANSSSSLDVLNAA-KQYKLHQRAAHVYS-EAKRVHAFKDTVSSNLSEE 231
K T + I N N +QY V + + + + DTV++ L+
Sbjct: 1834 GKRTGWLV-EI-VN-------YNVENQQY--------VAAGDLRAL----DTVTNVLN-F 1871
Query: 232 DKLKKL 237
KL+K+
Sbjct: 1872 IKLQKI 1877
Score = 42.0 bits (98), Expect = 3e-04
Identities = 48/248 (19%), Positives = 83/248 (33%), Gaps = 79/248 (31%)
Query: 27 SGLSSSTAFVCSSTVALMAAFG--------------------VEVPKAISIMAKSGFAEL 66
S L + V L+A FG V V I A++ +EL
Sbjct: 143 SALFRA---VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-LSEL 198
Query: 67 I----DFNPIRTT--DV--------QLPAGGTFVVAHSLAESLKAI--TAASNYNNRVVE 110
I D + T ++ P + S+ S I ++Y VV
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL---SIPISCPLIGVIQLAHY---VVT 252
Query: 111 CRLTAIVLAIKLGMKPQEAISKVKTLSDV-EGLCVAFACKNGSSDPVF--AVKEFLR--- 164
+L LG P E S +K + +GL A A S F +V++ +
Sbjct: 253 AKL--------LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 165 ------KE--PYTAL------DIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHV 210
E P T+L D + E + + + S+ + + + Q +++ +H+
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV----QDYVNKTNSHL 360
Query: 211 YSEAKRVH 218
K+V
Sbjct: 361 -PAGKQVE 367
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative
homoserine kinase, THRB, amino-acid biosynthesis,
ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Length = 298
Score = 38.8 bits (91), Expect = 0.002
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 257 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 310
P L ++ +V +N GA A L+GA G V+ ++ ++ +L+ + +
Sbjct: 225 PHLAQIRDVAKNQGAYAACLSGA--GPTVLVFAPRNLANKLQTSLQTLEIDADV 276
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET:
ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5
d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Length = 296
Score = 35.7 bits (83), Expect = 0.016
Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 257 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF---YQSRIDRG 313
P ++ ++ G ++G+ G ++A KE + L++ + ++ + +G
Sbjct: 236 PNYFKIKEEVKD-KVYGITISGS--GPSIIAFPKEEFIDEVENILRDYYENTIRTEVGKG 292
Query: 314 V 314
V
Sbjct: 293 V 293
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease,
hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus
fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Length = 258
Score = 34.6 bits (80), Expect = 0.029
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAISIMAKSGFAELIDFNPIRTTDVQ 78
S TA + +++VAL+ A GV + I+ +A D + D
Sbjct: 135 GSRTACLNAASVALVDA-GVPMKGMITSVA----VGKADGQLV--LDPM 176
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase,
exonuclease, phosphorolytic, exoribonuclease, RNA
degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus}
SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B
2c37_B* 2c38_B* 2c39_B* 3l7z_B
Length = 250
Score = 34.5 bits (80), Expect = 0.032
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAISIMAKSGFAELIDFNPIRTTDVQ 78
S + ++++AL A G+ + I+ +A D I D+
Sbjct: 139 GSRLVSLMAASLALADA-GIPMRDLIAGVA----VGKADGVII--LDLN 180
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 34.4 bits (80), Expect = 0.044
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAIS 56
SSS A C ++ALM + GV + A++
Sbjct: 443 SSSMASACGGSLALMDS-GVPISSAVA 468
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 34.0 bits (79), Expect = 0.070
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAIS------IMAKSGFAELID 68
SSS A VC S++A+M A GV + + +S I+ + GFA L D
Sbjct: 453 SSSMATVCGSSLAMMDA-GVPLVRPVSGIAMGLILEQDGFAVLSD 496
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 34.0 bits (79), Expect = 0.071
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAIS 56
SSS A VC +++ALM A GV + A++
Sbjct: 437 SSSMASVCGASLALMDA-GVPIKAAVA 462
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 34.0 bits (79), Expect = 0.078
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGV 49
S SSS A VC +++ALM A GV
Sbjct: 438 TESNGSSSMASVCGASLALMDA-GV 461
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 33.7 bits (78), Expect = 0.085
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGV 49
LGS S+S VC+ST++L+ A GV
Sbjct: 473 LGSNGSTSMGSVCASTMSLLNA-GV 496
>2po1_A Probable exosome complex exonuclease 1; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Length = 249
Score = 32.6 bits (75), Expect = 0.14
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAISIMAKSGFAELIDFNPIRTTDVQ 78
+ A + ++++AL A G+ + ++ A A I+ + D+
Sbjct: 135 GTRVAGITAASLALADA-GIPMRDLVAACA----AGKIEGEIV--LDLN 176
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.16
Identities = 34/247 (13%), Positives = 68/247 (27%), Gaps = 80/247 (32%)
Query: 17 HINSLFFNL-GSGLSSSTAFVC-SSTVALMAAFGVEVPKAISIMAKSGFAELIDFNPIRT 74
+N L + G + A C +S ++ + I SG A
Sbjct: 1087 WVNMLLISSSGPIKTPVGA--CATSVESVDIGV-----ETI----LSGKA---------- 1125
Query: 75 TDVQLPAGGT----------FVVAHSLAESLKAI------TAAS--NYNNR--------- 107
+ + GG F + + +L+ S R
Sbjct: 1126 -RICI-VGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGA 1183
Query: 108 --VVECRLTAIVLAIKLGMKPQEAISKVKTLSD-------VEGLCVAFACKNGSSDPVFA 158
+ + LA+K+G+ ++ T +D G + + S +A
Sbjct: 1184 GIQI---IMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYA 1240
Query: 159 VKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNA---------AKQYKLHQRAAH 209
K L + I + L+ L ++ L +R
Sbjct: 1241 SPNLNMKYRKRQLVT------REAQIKDWVENELEALKLEAEEIPSEDQNEF-LLERTRE 1293
Query: 210 VYSEAKR 216
+++EA+
Sbjct: 1294 IHNEAES 1300
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 249
Score = 31.9 bits (73), Expect = 0.20
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAISIMAKSGFAELIDFNPIRTTDVQ 78
+ A V ++T+A++ A G+ + + + A +D + D+
Sbjct: 137 GTYAACVNAATLAVLDA-GIPMRDFVCACS----AGFVDGTAL--ADLS 178
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase;
HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB:
3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Length = 306
Score = 32.1 bits (74), Expect = 0.22
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 256 CPELEELVNVCRNNGALGARLTGAGWGGCVVALV 289
P L + GAL ++G+ G L
Sbjct: 234 DPALARALRAGVEAGALAGIVSGS--GPTCAFLC 265
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.25
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 22/49 (44%)
Query: 230 EEDKLKKLGDLMNDSHHSCSV-LYEC-SCPELEELVNVCRNNGALGARL 276
E+ LKKL + S+ LY S P L A+ A +
Sbjct: 18 EKQALKKL-----QA----SLKLYADDSAPAL-----------AIKATM 46
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase;
1.98A {Oryza sativa japonica group}
Length = 246
Score = 31.3 bits (71), Expect = 0.32
Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAISIMA----KSGFAELIDFNPIRTTDVQLPAGGTF 85
S + + AL+ A G+ + + + G L + + + QL +
Sbjct: 114 SLLPCAINACCAALVFA-GIPLKHLAVAIGCGVLEDGEVIL---DTNKAEEQQLKSFAHL 169
Query: 86 VVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 133
V + S K+ ++ N+ E ++ +I G+ +E
Sbjct: 170 VFPN----SRKSASSKE--PNQKEEDSERGLITSITHGVMSEEDYFSC 211
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase;
non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus
thermophilus} SCOP: d.14.1.5 d.58.26.5
Length = 275
Score = 30.6 bits (70), Expect = 0.54
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 256 CPELEELVNVCRNNGALGARLTGAGWGGCVVALV 289
PEL+E+ R G G ++G+ G L
Sbjct: 210 FPELKEVRGRMRALGLRGVLMSGS--GSAFFGLA 241
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined
alpha helices; 2.20A {Corynebacterium glutamicum atcc
13032} PDB: 2du9_A
Length = 129
Score = 29.0 bits (65), Expect = 0.98
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 22/108 (20%)
Query: 39 STVALMAAFGVE---VPKAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 95
ST L A + ++++ ++G G FV A + A
Sbjct: 30 STNELAAFHRINPATARNGLTLLVEAGILYKK------------RGIGMFVSAQAPALIR 77
Query: 96 KAITAASNYNNRVVECRLTAIV-LAIKLGMKPQEAISKVKTLSDVEGL 142
+ + + ++ +I LG + + +++ GL
Sbjct: 78 E------RRDAAFAATYVAPLIDESIHLGFTRARIHALLDQVAESRGL 119
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic,
hydrolase/transferase complex; 3.35A {Homo sapiens}
SCOP: d.14.1.4 d.101.1.1
Length = 272
Score = 29.4 bits (66), Expect = 1.3
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAIS 56
S+ A + ++ +AL A GVE+ +
Sbjct: 156 SALAAALTAAALALADA-GVEMYDLVV 181
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 246
Score = 29.6 bits (67), Expect = 1.4
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKAIS 56
+ + T+AL+ A G+ + IS
Sbjct: 134 GIMGSLINGITLALIDA-GISMFDYIS 159
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5'
exoribonuclease, hydrolase; 2.65A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 240
Score = 29.1 bits (66), Expect = 1.8
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 30 SSSTAFVCSSTVALMAA 46
+ A + +++VAL A
Sbjct: 135 GTRCAGITAASVALADA 151
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural
GE PSI-2, protein structure initiative, midwest center
for STR genomics, MCSG; 2.09A {Listeria innocua}
Length = 236
Score = 28.8 bits (65), Expect = 2.3
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 23/106 (21%)
Query: 42 ALMAAFGVE---VPKAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAI 98
AL + + +A+ ++ + G L+ V+ G +V A+++ +
Sbjct: 38 ALQEIYSSSRTTIRRAVDLLVEEG---LV---------VRKNGVGLYVQPKLTAQNILEM 85
Query: 99 T------AASNYNNRVVECRLTAI--VLAIKLGMKPQEAISKVKTL 136
T N + + + A GMK E + +K +
Sbjct: 86 TGVMKNDTNENLKKDIKDFYIRKAGKFYAEIFGMKENELVYSIKFV 131
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
nucleotide-binding, isoprene biosynthesis, transferase,
ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex
aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Length = 271
Score = 28.7 bits (65), Expect = 2.5
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 256 CPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 302
PE+ E+ ++G+ G V S + + ++
Sbjct: 219 YPEINEVYRFVEY-LGFKPFVSGS--GSTVYFFGGASEELKKAAKMR 262
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 28.9 bits (64), Expect = 2.9
Identities = 28/213 (13%), Positives = 59/213 (27%), Gaps = 36/213 (16%)
Query: 78 QLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 137
+ AG +F + + LK Y A+V A+ + PQ A + V +L
Sbjct: 3 HMEAGDSF-----MRDLLKREEELIGYCREEALKEPAAMVEAVTATVWPQNAETTVDSLL 57
Query: 138 DVEGLCV---------AFA----CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSI 184
+ + ++ FA+K F + ++E++ E
Sbjct: 58 SQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATF--- 114
Query: 185 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS 244
A L + + + + +L D +
Sbjct: 115 -------------AAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVA 161
Query: 245 HHSCSVLYECSCPELEELVNVCRNNGALGARLT 277
++ ++ S +LE L +
Sbjct: 162 NY-LLLMPAASV-DLELLFSTLDFVYVFRGDEG 192
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 27.9 bits (62), Expect = 4.6
Identities = 7/34 (20%), Positives = 8/34 (23%), Gaps = 8/34 (23%)
Query: 245 HHSCSVLYECSCP--------ELEELVNVCRNNG 270
C C CP + C N G
Sbjct: 190 GGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGG 223
Score = 27.9 bits (62), Expect = 5.3
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 247 SCSVLYECSCP--------ELEELVNVCRNNG 270
+C +C CP E+ + CRN G
Sbjct: 224 TCFYPGKCICPPGLEGEQCEISKCPQPCRNGG 255
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 28.1 bits (62), Expect = 4.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 104 YNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLC-VAFACKNGSSDPVFAVKEF 162
Y N + CR IVL L E + +S EG+ VAF+ K+ S F + +
Sbjct: 340 YRNVMENCRENMIVLREGL-----EKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDM 394
Query: 163 LRK 165
LR+
Sbjct: 395 LRR 397
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus
subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Length = 245
Score = 27.3 bits (61), Expect = 7.5
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 30 SSSTAFVCSSTVALMAAF 47
+ TA + + +A+ A
Sbjct: 124 GTRTASITGAFLAMAIAI 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.371
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,968,842
Number of extensions: 293475
Number of successful extensions: 744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 60
Length of query: 338
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 244
Effective length of database: 4,077,219
Effective search space: 994841436
Effective search space used: 994841436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)