RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019635
(338 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 92.8 bits (230), Expect = 3e-23
Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 169 TALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 228
T LDI+ + E AN+ D L +RA H E R +
Sbjct: 36 TRLDIQSLGELSNEEFDANTDLIGDET-------LIKRARHAVYENNRTKIAQ-----KA 83
Query: 229 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVA 287
L K G+L+N SH S YE + EL+ L + G LGAR+TGAG+GGC +A
Sbjct: 84 FVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIA 143
Query: 288 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 335
LV S F + + + + + ++ SG+ K
Sbjct: 144 LVAHDNVSAFRKAVGQVYEEVV---------GYPASFYVAQIGSGSTK 182
Score = 30.4 bits (68), Expect = 0.17
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 85 FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 125
V+ ++ S YN R E R + +L ++
Sbjct: 4 IVIMNTNK---PRALTESKYNERFAETREALKRMQTRLDIQ 41
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 91.7 bits (227), Expect = 6e-23
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 203 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 262
+ +++ E RV +D + +E ++K+G ++ +H + Y SC EL+
Sbjct: 54 HRKFFSYIVRENARVLEVRDAL-----KEGDIEKVGKILTTAHWDLAENYRVSCEELDFF 108
Query: 263 VNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGL 322
V GA GARLTGAG+GG +ALV + + ++
Sbjct: 109 VKKAMELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLA---------KFSWKA 159
Query: 323 YVFASKPSSGA 333
F KPS G
Sbjct: 160 KYFVVKPSDGV 170
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 85.1 bits (210), Expect = 2e-20
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 192 LDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL 251
L+ + +RA HV E +R + + G LM +SH S
Sbjct: 47 LEAARDLVSKEGFRRARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHRSLRDD 101
Query: 252 YECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 310
YE SCPEL++LV G G+R+TG G+GGC V L++ S + +++E +
Sbjct: 102 YEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYG---- 157
Query: 311 DRGVINNNDLGLYVFASKPSSGA 333
+ S+ + GA
Sbjct: 158 ---------GTATFYLSQAADGA 171
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 72.0 bits (176), Expect = 9e-16
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 205 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN 264
+ E +RV ++ L +LM+ + H + L++L
Sbjct: 41 TSIDAISLECERVLGEMAA----APVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQ 95
Query: 265 VCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 305
V +G ++LTGAG GGC + L+K ++ + K+
Sbjct: 96 VTAAHGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 59.6 bits (144), Expect = 1e-11
Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 172 DIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 231
+ E+ + I + + ++ E +V + L +
Sbjct: 3 EFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKV------IDEALKIK 56
Query: 232 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE 291
+ + G LM +H S P+L+ +V++ G GA+LTGAG GGCV+ LV E
Sbjct: 57 N-KEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFGF-GAKLTGAGGGGCVIILVNE 113
Query: 292 SIDSQFILNLKEQFYQ 307
+ + + L ++ +
Sbjct: 114 EKEKELLKELNKEDVR 129
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 135
Score = 43.2 bits (101), Expect = 5e-06
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 230 EEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 288
E+ K +K+ + + + L + P L +L ++ A A+ +GAG G C +AL
Sbjct: 50 EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIAL 108
Query: 289 VKESIDSQFILN 300
++ ++ + N
Sbjct: 109 SFDAQSTKTLKN 120
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 36.0 bits (82), Expect = 0.002
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 24/90 (26%)
Query: 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------------- 53
+ LG+GLSSS +F L + + +
Sbjct: 86 LKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGI 145
Query: 54 ---AISIMAKSGFAELIDFNPIRTTDVQLP 80
+ K +D ++ + P
Sbjct: 146 LDQFAVVFGKKDNVIFLDTQTLQYEYIPFP 175
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 35.6 bits (81), Expect = 0.004
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 24/90 (26%)
Query: 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------------------- 53
F+ + LG GLSSS + ++ L
Sbjct: 124 FSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGI 183
Query: 54 ---AISIMAKSGFAELIDFNPIRTTDVQLP 80
IS+M + G A LID + T+ V L
Sbjct: 184 MDQFISLMGQKGHALLIDCRSLETSLVPLS 213
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 133
Score = 29.7 bits (66), Expect = 0.21
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 256 CPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK---EQFYQSRIDR 312
P ++ ++ G ++G+ G ++A KE + L+ E ++ + +
Sbjct: 72 IPNYFKIKEEVKD-KVYGITISGS--GPSIIAFPKEEFIDEVENILRDYYENTIRTEVGK 128
Query: 313 GV 314
GV
Sbjct: 129 GV 130
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 29.4 bits (65), Expect = 0.39
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 24/75 (32%)
Query: 27 SGLSSSTAFVCSSTVALMAAFGVEVPK------------------------AISIMAKSG 62
SGLSSS + V L F + VP+ +
Sbjct: 126 SGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVK 185
Query: 63 FAELIDFNPIRTTDV 77
A +D N ++ V
Sbjct: 186 KAIELDCNTLKYEMV 200
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 28.0 bits (61), Expect = 1.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 229 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNG 270
EE K + L DL + + +V++ + ++EEL RN+
Sbjct: 10 EEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK 51
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 27.7 bits (61), Expect = 2.4
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 258 ELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 309
EL+ + ++ G G +V +++D+ FI+ +K +F +++
Sbjct: 44 ELKPISKEGHSSSLFGN-----IKGATIV----DALDTLFIMGMKTEFQEAK 86
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 26.3 bits (57), Expect = 3.9
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 25 LGSGLSSSTAFVCSSTVALMAA 46
L + S + ++++AL A
Sbjct: 125 LQADAGSRLVSLMAASLALADA 146
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 144
Score = 26.0 bits (56), Expect = 4.0
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGV 49
L + S TA + +++VAL+ A GV
Sbjct: 121 LQADAGSRTACLNAASVALVDA-GV 144
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 26.6 bits (58), Expect = 4.6
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 280 GWGGCVVALVKESIDSQFILNLKEQFYQSR-----IDRGVINNNDLGLYVF 325
GWG + + +D+ ++ + I+ + G VF
Sbjct: 47 GWGSSAI----DGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSSVF 93
>d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia
ensiformis), Concanavalin B [TaxId: 3823]}
Length = 283
Score = 26.7 bits (58), Expect = 4.6
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 241 MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 300
+ C C LE + C+ G L G G +
Sbjct: 48 LELEGV-CGPSVGNPCSFLESQIKECQRMGVK-VFLALGGPKG-TYSACSADYAKDLAEY 104
Query: 301 LKEQFYQSRIDRGVINNNDLGLYVFASKPSS 331
L F R + + G++ KP
Sbjct: 105 LHTYFLSERREGPLGKVALDGIHFDIQKPVD 135
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 26.4 bits (57), Expect = 5.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 278 GAGWGGCVVA 287
G+G+GG V A
Sbjct: 14 GSGYGGAVAA 23
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 72
Score = 24.2 bits (53), Expect = 6.6
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 118 LAIKLGMKPQEAISKVKTL 136
LA ++G++ Q+AI++++ L
Sbjct: 27 LAFQMGLRTQDAINRIQDL 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.371
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,161,051
Number of extensions: 51161
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 25
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)