Query 019636
Match_columns 338
No_of_seqs 121 out of 211
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06161 DUF975: Protein of un 99.1 1.8E-07 3.9E-12 85.8 28.9 178 102-303 57-243 (243)
2 PF10110 GPDPase_memb: Membran 99.0 8.7E-09 1.9E-13 87.7 14.3 138 112-250 8-148 (149)
3 PF06790 UPF0259: Uncharacteri 98.9 1.6E-06 3.5E-11 79.5 26.8 192 10-242 2-195 (248)
4 PRK02868 hypothetical protein; 98.8 6E-06 1.3E-10 75.2 25.2 240 14-301 3-244 (245)
5 COG4781 Membrane domain of mem 95.7 2 4.3E-05 40.6 25.0 40 197-236 177-216 (340)
6 PF10110 GPDPase_memb: Membran 80.4 33 0.00072 28.7 15.1 50 6-60 17-69 (149)
7 PF13197 DUF4013: Protein of u 67.7 76 0.0017 26.9 15.1 22 2-23 31-53 (169)
8 PF04515 Choline_transpo: Plas 66.9 1.2E+02 0.0025 28.7 29.1 97 207-303 218-328 (334)
9 PRK04949 putative sulfate tran 59.0 1.5E+02 0.0032 27.4 24.0 38 197-239 172-209 (251)
10 PF05767 Pox_A14: Poxvirus vir 58.9 83 0.0018 24.3 8.4 48 269-333 44-91 (92)
11 PF03605 DcuA_DcuB: Anaerobic 52.6 1.4E+02 0.003 29.2 9.9 106 15-142 68-177 (364)
12 COG5523 Predicted integral mem 44.0 2.7E+02 0.0058 25.9 13.9 48 198-245 152-204 (271)
13 PF02439 Adeno_E3_CR2: Adenovi 41.5 43 0.00092 21.6 3.1 24 282-305 11-34 (38)
14 PF13197 DUF4013: Protein of u 32.2 3.1E+02 0.0067 23.1 16.8 57 101-162 10-66 (169)
15 PF04854 DUF624: Protein of un 31.5 2E+02 0.0044 20.8 8.9 35 108-142 23-59 (77)
16 PF11368 DUF3169: Protein of u 30.9 1.7E+02 0.0036 26.8 6.7 18 234-251 8-25 (248)
17 PLN03074 auxin influx permease 29.9 2.7E+02 0.0059 28.1 8.6 33 272-304 77-109 (473)
18 PF06161 DUF975: Protein of un 29.5 4.1E+02 0.0089 23.7 9.6 32 224-255 8-39 (243)
19 PF05545 FixQ: Cbb3-type cytoc 28.3 1E+02 0.0023 20.5 3.7 15 293-307 24-38 (49)
20 PF11460 DUF3007: Protein of u 27.6 37 0.00079 27.0 1.4 37 287-331 47-83 (104)
21 PF10624 TraS: Plasmid conjuga 24.1 2.4E+02 0.0052 23.5 5.6 54 279-332 71-126 (164)
22 TIGR01566 ZF_HD_prot_N ZF-HD h 23.7 32 0.0007 23.6 0.4 36 296-336 2-37 (53)
23 PHA03149 hypothetical protein; 22.2 38 0.00083 24.2 0.6 31 296-330 5-35 (66)
24 PF12911 OppC_N: N-terminal TM 22.0 2.2E+02 0.0048 19.1 4.5 25 16-40 4-28 (56)
No 1
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=99.13 E-value=1.8e-07 Score=85.81 Aligned_cols=178 Identities=17% Similarity=0.230 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-CCCchhHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-Hhc
Q 019636 102 YLVLSLLSTSAVVYTVACVYTG-KDVSFKKVMSVV--PKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWV----VL-WGI 173 (338)
Q Consensus 102 ~~~~sll~~~aiv~ava~~~~g-k~~sl~~~~~~~--~~~~~~ll~T~~~~~~l~l~~~~~~~~~l~~~~----~~-~~~ 173 (338)
.++.+++..+. .+..-..+.| ++.++++..... ++.+| .+.+.+...+..+....+.++...... .. .+.
T Consensus 57 ~lv~~~l~~G~-~~~~L~~~r~~~~~~~~d~f~~F~~~~f~k-~~~~~ll~~l~~~Lw~ll~~i~~~i~~~~~~~~~~~~ 134 (243)
T PF06161_consen 57 SLVSGPLSAGY-SFFYLDIVRGKEEPSFSDLFYGFKKKRFGK-SFLLYLLISLFIFLWSLLFIIGFFIFFISFFIFLVGS 134 (243)
T ss_pred HHHHHHHHHHH-HHHHHHHHhCCCCCCHHHHHHHHccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444444 4455577777 899999998766 44444 455555555555544444322211111 00 111
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeec-ccchhhHHHhhHHHhcCChHHHHHHHHHHHHHHHHHH
Q 019636 174 LTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLE-ESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQ 252 (338)
Q Consensus 174 ~~~~~~~~~~l~~~~l~~i~~~~~~~yl~v~~~la~vvsVlE-~~~G~~AL~rS~~L~kG~~~~~l~l~ll~~l~~~~i~ 252 (338)
..........+.......+...+...+....+.++.-+-.-+ |.+..+|+++|+++|||++|+.+.+.+-+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~y~~~~yil~d~~~~~~~~al~~S~~lmkg~k~~~f~l~Lsfigw----- 209 (243)
T PF06161_consen 135 MNSRSSIISLLLLLVLLLLLLIIPGIIVSYSYSMVPYILADNPELGAFEALKRSRKLMKGNKWRLFLLDLSFIGW----- 209 (243)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 111101111112222233334445566666666666654333 56899999999999999999998877644222
Q ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 019636 253 LIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYH 303 (338)
Q Consensus 253 ~~~~~~v~~~~~~g~~~~v~~g~v~~~l~~~v~l~~~vv~tV~Y~~CK~~~ 303 (338)
.+ .+-+..|+ ..-.+.++..++++.||.|+|+++
T Consensus 210 -~~------------L~~~t~gi----~~l~~~pY~~~~~a~fY~~l~~~~ 243 (243)
T PF06161_consen 210 -YI------------LGLLTFGI----GLLWVIPYINTAQAEFYEELRKRK 243 (243)
T ss_pred -HH------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 00111122 224456999999999999999864
No 2
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=99.02 E-value=8.7e-09 Score=87.71 Aligned_cols=138 Identities=18% Similarity=0.212 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCCCCchhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-ccc-chhHHHHHHHH
Q 019636 112 AVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWG-IL-TAG-GDIKFMLSILY 188 (338)
Q Consensus 112 aiv~ava~~~~gk~~sl~~~~~~~~~~~~~ll~T~~~~~~l~l~~~~~~~~~l~~~~~~~~-~~-~~~-~~~~~~l~~~~ 188 (338)
..+..+.+.+.||+.|.+++++...+.+|+.........++.+..... +.-+.....+.. .. +.. .|.-..-....
T Consensus 8 ~li~~~~~~~~~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP-~~~~~~~s~ll~~l~IP~FI~~~i~~~~~~~ 86 (149)
T PF10110_consen 8 FLILGIYRILRGEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILP-FANLGFSSSLLSKLKIPEFITDYIMKNPWLL 86 (149)
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHHHHHHHHHccCcCchHHHHHHHHhHHHH
Confidence 345667789999999999998755455555544443222222211111 111110001110 00 000 00000001123
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeeecccchhhHHHhhHHHhcCChHHHHHHHHHHHHHHHH
Q 019636 189 VILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFA 250 (338)
Q Consensus 189 l~~i~~~~~~~yl~v~~~la~vvsVlE~~~G~~AL~rS~~L~kG~~~~~l~l~ll~~l~~~~ 250 (338)
.+..++.+...|++++|.++.+.-++||+...+|+||||+++||++|+.+...++..+..++
T Consensus 87 ~~~~~~~~~~~~l~~R~if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~~~~~l~~~~~~~~ 148 (149)
T PF10110_consen 87 ILYLLLYLILFYLNIRLIFVLPLIVLENKSFKEALKESWQLTKGRFWRILGRLLLLFIIIGI 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 34455567789999999999999999999999999999999999999999888877766553
No 3
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=98.94 E-value=1.6e-06 Score=79.47 Aligned_cols=192 Identities=17% Similarity=0.218 Sum_probs=111.2
Q ss_pred cCcHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhcccCCCCChhhhhHHhhhhHhH-
Q 019636 10 FLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMERHFTPAGSARFNKLTDVISEDR- 88 (338)
Q Consensus 10 ~Lg~~~Il~ea~~i~~~n~~~f~~i~~ll~lPls~l~l~~~~~~~pl~~~i~~~~~~l~~~~p~~~~~~~l~~~~~~~~- 88 (338)
|-..-+++|++++-.|++.+..+.++++..+- + ..+-|.+. |=.+++..-.+ +.+..+.....++.++.+.|-
T Consensus 2 ~ita~~l~rDs~nFfrnq~~~I~llsll~a~i-t-vil~~~~~--p~~~~l~~l~~--~~~~~~~~sl~~~v~~ms~eqq 75 (248)
T PF06790_consen 2 PITANSLYRDSFNFFRNQLISILLLSLLTAFI-T-VILNHIFS--PNAEQLQILSN--NSDFSSSMSLQDIVQQMSPEQQ 75 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhC--ccHHHHHHHHh--hhchhccccHHHHHHhCCHHHH
Confidence 45567899999999999887555444433221 1 11223222 21122221111 011011122333334433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 019636 89 TLYWFFKVAYLTFYLVLSLLSTSAVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMVTF-LCTFLAYFLYNFAAIVVVSLW 167 (338)
Q Consensus 89 ~~l~~~~~~~~~~~~~~sll~~~aiv~ava~~~~gk~~sl~~~~~~~~~~~~~ll~T~-~~~~~l~l~~~~~~~~~l~~~ 167 (338)
..++-.+++.....++...+-.++++.-......||+.+..++++...+.|+|++... +++.++.++.
T Consensus 76 ~~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~----------- 144 (248)
T PF06790_consen 76 NVLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGF----------- 144 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------
Confidence 2223344555555566666666776666778888999999999986555677753332 2222111111
Q ss_pred HHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecccchhhHHHhhHHHhcCChHHHHHHHH
Q 019636 168 VVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILF 242 (338)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~~~~~yl~v~~~la~vvsVlE~~~G~~AL~rS~~L~kG~~~~~l~l~l 242 (338)
..+.+--+|+++.+++|+++.+.|+.+..+|+|+||++++|++|......+
T Consensus 145 ------------------------~L~ivPGI~l~I~lslap~ilv~ek~~i~~Amr~S~~Lt~~~~~ii~p~vL 195 (248)
T PF06790_consen 145 ------------------------MLFIVPGIILAILLSLAPIILVLEKKGIFDAMRASWKLTFGNFRIIIPAVL 195 (248)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112358889999999999999999999999999999999887654433
No 4
>PRK02868 hypothetical protein; Provisional
Probab=98.81 E-value=6e-06 Score=75.23 Aligned_cols=240 Identities=17% Similarity=0.182 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhcccCCCCChhhhhHHhhhhHhHH-HHH
Q 019636 14 FGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMERHFTPAGSARFNKLTDVISEDRT-LYW 92 (338)
Q Consensus 14 ~~Il~ea~~i~~~n~~~f~~i~~ll~lPls~l~l~~~~~~~pl~~~i~~~~~~l~~~~p~~~~~~~l~~~~~~~~~-~l~ 92 (338)
-.++|++.+-.|......+.++++...- +.+ +-|.+... .+++...++..+.. +.....++.++.++|-. .++
T Consensus 3 ~~l~rDs~nF~rnq~~~i~~lsll~a~i-tv~-i~~~~~p~--~~~l~~l~~~~~~~--~~~~l~~~v~~ms~eqq~~ll 76 (245)
T PRK02868 3 NSLYRDTGNFFRNQFITILLLSLLTAFI-TVL-LGHAFSPS--DEQLSILENGIPIS--GSSGLFELVQNMSPEQQQILL 76 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHhCCC--HHHHHHHHhhhhcc--ccccHHHHHHhCCHHHHHHHH
Confidence 4578999998888765554444443221 211 22322211 11121111111111 11223333333432221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019636 93 FFKVAYLTFYLVLSLLSTSAVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMV-TFLCTFLAYFLYNFAAIVVVSLWVVLW 171 (338)
Q Consensus 93 ~~~~~~~~~~~~~sll~~~aiv~ava~~~~gk~~sl~~~~~~~~~~~~~ll~-T~~~~~~l~l~~~~~~~~~l~~~~~~~ 171 (338)
-.+++-....++...+-.+++..=....-.||+++..+++....+.|++++. +++++.++.+
T Consensus 77 ~~s~~~~~s~lig~~lL~g~il~~I~~~s~g~~v~~~~~~~~s~~~lp~l~lL~fl~tLlI~l----------------- 139 (245)
T PRK02868 77 KASAASTFSGLIGNTLLLGGILTLIQLVSAGQRVSALRAIGASAPILPKLLILIFLTTLLIQL----------------- 139 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 2333333334444444444444334445568889999999877677776522 1111111111
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecccchhhHHHhhHHHhcCChHHHHHHHHHHHHHHHHH
Q 019636 172 GILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAV 251 (338)
Q Consensus 172 ~~~~~~~~~~~~l~~~~l~~i~~~~~~~yl~v~~~la~vvsVlE~~~G~~AL~rS~~L~kG~~~~~l~l~ll~~l~~~~i 251 (338)
+...+.+--+|++++.++++++-+.|+.+..+|+|+||++.+|++|+..-.++.--+.-..+
T Consensus 140 ------------------G~~L~iiPGI~l~I~lsLa~vi~v~ek~~v~~Air~S~~l~~~~~~~i~p~il~Wll~k~ll 201 (245)
T PRK02868 140 ------------------GFMLVVVPGILLAIALSLSPVILVTEKMGIFASMRASMRLAWANMRLVAPAVLLWLLAKTLL 201 (245)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233468999999999999999999999999999999999999876444332322222
Q ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019636 252 QLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKS 301 (338)
Q Consensus 252 ~~~~~~~v~~~~~~g~~~~v~~g~v~~~l~~~v~l~~~vv~tV~Y~~CK~ 301 (338)
..+.+..-. .+. . ...++...+..+++.+..+..-=+|+-+|+
T Consensus 202 ~ll~~~l~~----~~~--~-v~~vi~~~l~nlls~fllIylFRlYmL~~~ 244 (245)
T PRK02868 202 LLLASSFAV----LTP--N-VAAVLLNTLSNLISAILLIYLFRLYMLLRQ 244 (245)
T ss_pred HHHHHHHhc----cCh--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 222211111 111 1 223455566677777777776666665553
No 5
>COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=95.67 E-value=2 Score=40.63 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhheeeeecccchhhHHHhhHHHhcCChHH
Q 019636 197 GHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLV 236 (338)
Q Consensus 197 ~~~yl~v~~~la~vvsVlE~~~G~~AL~rS~~L~kG~~~~ 236 (338)
...|++++.-++.+--++++..-.+|+|+||+-+|.+.-+
T Consensus 177 liFyis~RLif~LPl~i~~~~tv~~Air~Swk~TKk~~f~ 216 (340)
T COG4781 177 LIFYISVRLIFALPLIILDQLTVREAIRESWKKTKKNVFF 216 (340)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHhhhHHH
Confidence 3459999999999999999999999999999999966444
No 6
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=80.37 E-value=33 Score=28.70 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=32.6
Q ss_pred hhcccCcHHHHHHHHHHHHhh--Chh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019636 6 EEMQFLGIFGIYREACKVIIT--WRR-IFSKITLALILPLSFIFLAHVELTDLLHRKV 60 (338)
Q Consensus 6 ~~l~~Lg~~~Il~ea~~i~~~--n~~-~f~~i~~ll~lPls~l~l~~~~~~~pl~~~i 60 (338)
+.-++.+..++++++.+-.++ +++ .++.+.+++..|+.-+. ...|+.+++
T Consensus 17 ~~~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP~~~~~-----~~s~ll~~l 69 (149)
T PF10110_consen 17 LRGEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILPFANLG-----FSSSLLSKL 69 (149)
T ss_pred HcCCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-----HHHHHHccC
Confidence 345677899999999988875 333 44557777888865433 344555544
No 7
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=67.71 E-value=76 Score=26.95 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=15.5
Q ss_pred cchhhhcccC-cHHHHHHHHHHH
Q 019636 2 DREQEEMQFL-GIFGIYREACKV 23 (338)
Q Consensus 2 ~~~~~~l~~L-g~~~Il~ea~~i 23 (338)
+.+.+++++. +.++.+++.+|.
T Consensus 31 ~g~~~~lP~~~~~~~l~~~G~~~ 53 (169)
T PF13197_consen 31 IGGSDPLPEFNDWGELFVDGLKA 53 (169)
T ss_pred ccCCCCCCCchHHHHHHHHHHHH
Confidence 3445667776 778888888876
No 8
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=66.93 E-value=1.2e+02 Score=28.75 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=54.4
Q ss_pred hhheeeeecccchhhHHHhhHHHhcCChHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc----cc--cccc-hhHH
Q 019636 207 LASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIM-------NISLFAVQLIFWRLVVHG----WW--LGTG-SRVL 272 (338)
Q Consensus 207 la~vvsVlE~~~G~~AL~rS~~L~kG~~~~~l~l~ll~-------~l~~~~i~~~~~~~v~~~----~~--~g~~-~~v~ 272 (338)
.|.+-..+-+..=.+|-||+++|++.+.++....--+. .+..+...+.+....... .. .... .-+.
T Consensus 218 ~ayi~~ai~G~~F~~sak~~~~L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (334)
T PF04515_consen 218 YAYIYIAIYGKSFCESAKRAFELIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALIS 297 (334)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHH
Confidence 44455566677777899999999999988854332221 222222233333333221 11 1111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 019636 273 FGVICLLLLFKLMLFALVIQTVIYFVCKSYH 303 (338)
Q Consensus 273 ~g~v~~~l~~~v~l~~~vv~tV~Y~~CK~~~ 303 (338)
..+.+........+++..+.|++.+-|...+
T Consensus 298 ~~i~~~i~~~f~~v~~~~vdti~vc~~~d~e 328 (334)
T PF04515_consen 298 FFIGYFISSIFMSVYSSAVDTIFVCYAEDPE 328 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2234444556778899999999998887643
No 9
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=59.02 E-value=1.5e+02 Score=27.35 Aligned_cols=38 Identities=8% Similarity=-0.035 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhheeeeecccchhhHHHhhHHHhcCChHHHHH
Q 019636 197 GHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAV 239 (338)
Q Consensus 197 ~~~yl~v~~~la~vvsVlE~~~G~~AL~rS~~L~kG~~~~~l~ 239 (338)
.-.|+..+-.+..+. | ++|. ..+++.+..|.+|.+.++
T Consensus 172 ~~awll~~ey~d~~~---~-r~~~-~~~~~r~~l~~~r~~~~g 209 (251)
T PRK04949 172 FSAWMMAIQYCDYPF---D-NHKV-SFKDMRAALRQKRGTSLQ 209 (251)
T ss_pred HHHHHHHHHHhHhHH---H-HCCC-CHHHHHHHHHHhhhHHHH
Confidence 344555444443332 3 3332 356677888888888765
No 10
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=58.87 E-value=83 Score=24.33 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhhhhhhcCcccccCCCCccc
Q 019636 269 SRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKDIQL 333 (338)
Q Consensus 269 ~~v~~g~v~~~l~~~v~l~~~vv~tV~Y~~CK~~~~e~id~~~l~~~l~~y~~~y~~l~~~~~~~ 333 (338)
.|++ -+.....+.+..++.+....++..|+.+..+ | |+..+.++|+|+
T Consensus 44 wRal--Sii~FI~giil~lG~~i~s~ygr~C~~s~~~--~-------------~~~R~Nss~iEl 91 (92)
T PF05767_consen 44 WRAL--SIICFILGIILTLGIVIFSMYGRYCRPSSKV--I-------------DNGRYNSSDIEL 91 (92)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc--C-------------ccccccCCcccc
Confidence 4555 3445577888999999999999999974432 1 344456677775
No 11
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=52.59 E-value=1.4e+02 Score=29.22 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHH-HHHHHH-hHHHHHHHhhhhhhcccCCCCChhhhhHHhhhhHhHHHHH
Q 019636 15 GIYREACKVIITWRRIFSKITLALILPLSFIF-LAHVEL-TDLLHRKVVHDKMERHFTPAGSARFNKLTDVISEDRTLYW 92 (338)
Q Consensus 15 ~Il~ea~~i~~~n~~~f~~i~~ll~lPls~l~-l~~~~~-~~pl~~~i~~~~~~l~~~~p~~~~~~~l~~~~~~~~~~l~ 92 (338)
=..+-|=|++|||||..+-+.=++.--++++. -.|... .-|.+.++..++ +--|.||.-.. .+
T Consensus 68 ylV~~Aek~LRk~Pk~It~lAP~vt~~~T~~~GTgh~a~s~lPVI~eVA~~~----~IRPeRPls~s-----------vv 132 (364)
T PF03605_consen 68 YLVQIAEKILRKNPKYITFLAPLVTYLFTFLAGTGHVAYSLLPVIAEVAKEN----GIRPERPLSIS-----------VV 132 (364)
T ss_pred HHHHHHHHHHHhCCCcEEEehhHHHHHHHHHhcccHHHHHhhHHHHHHHHHc----CCCCCCchHHH-----------HH
Confidence 35778899999999985443222221112211 123322 346666665432 22244442110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchhHHHHh-hhhhHHHH
Q 019636 93 FFKVAYLTFYLVLSLLSTSAVVYTVACVYTG-KDVSFKKVMSV-VPKVWKRL 142 (338)
Q Consensus 93 ~~~~~~~~~~~~~sll~~~aiv~ava~~~~g-k~~sl~~~~~~-~~~~~~~l 142 (338)
..+ ...+-|++|.+.+.. .....+ +.+++.+.+.. +|..+-+.
T Consensus 133 ASq-----~aItaSPiSAA~~~~--~~~l~~~~gv~~~~iL~V~iPat~ig~ 177 (364)
T PF03605_consen 133 ASQ-----IAITASPISAATVAM--IAILAPAHGVSLLQILAVTIPATLIGV 177 (364)
T ss_pred HHh-----cchhcCcHHHHHHHH--HHHHccccCCCHHHHHHhhHHHHHHHH
Confidence 011 123345665554433 234555 77888887763 45544433
No 12
>COG5523 Predicted integral membrane protein [Function unknown]
Probab=44.01 E-value=2.7e+02 Score=25.88 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhh--eeeeecccc---hhhHHHhhHHHhcCChHHHHHHHHHHH
Q 019636 198 HFYLSVIWHLAS--VVSVLEESC---GFAAMIKSQALIKGKMLVTAVILFIMN 245 (338)
Q Consensus 198 ~~yl~v~~~la~--vvsVlE~~~---G~~AL~rS~~L~kG~~~~~l~l~ll~~ 245 (338)
..+..-.|.++. .-.++||.+ ..+++..|...|||.+|+.+.+-+-+.
T Consensus 152 ~ii~~~i~~~~~y~ay~~l~dg~~~ga~~vl~eS~~mMKG~kw~lF~L~Lsf~ 204 (271)
T COG5523 152 LIILGYIASLAYYMAYDQLEDGGYLGAYSVLSESKKMMKGYKWKLFILKLSFI 204 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhHHHhHHHHHHhccccchhhhhHHHH
Confidence 344444444433 334666554 556799999999999999997766543
No 13
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=41.48 E-value=43 Score=21.57 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhccCcccc
Q 019636 282 FKLMLFALVIQTVIYFVCKSYHHE 305 (338)
Q Consensus 282 ~~v~l~~~vv~tV~Y~~CK~~~~e 305 (338)
+++.-+...+.+++||-|.-++++
T Consensus 11 ~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 11 AVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 444455667778888888776654
No 14
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=32.18 E-value=3.1e+02 Score=23.12 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019636 101 FYLVLSLLSTSAVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIV 162 (338)
Q Consensus 101 ~~~~~sll~~~aiv~ava~~~~gk~~sl~~~~~~~~~~~~~ll~T~~~~~~l~l~~~~~~~~ 162 (338)
...+..++..+-..-...+...|++-++.| | +.|++++..-+...++.+.|...+..
T Consensus 10 i~ii~~~~~~GY~~~v~~~~~~g~~~~lP~-~----~~~~~l~~~G~~~~ii~ivy~i~~~i 66 (169)
T PF13197_consen 10 IPIIGLFLLLGYLVRVIRSTAIGGSDPLPE-F----NDWGELFVDGLKAFIISIVYSIPPII 66 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCC-c----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554565343333 2 13555555555555555666655444
No 15
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=31.50 E-value=2e+02 Score=20.77 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhcCC-C-CchhHHHHhhhhhHHHH
Q 019636 108 LSTSAVVYTVACVYTGK-D-VSFKKVMSVVPKVWKRL 142 (338)
Q Consensus 108 l~~~aiv~ava~~~~gk-~-~sl~~~~~~~~~~~~~l 142 (338)
.++++..+++.+...++ + ...++-|+..++.||+-
T Consensus 23 PA~~Al~~~~~~~~~~~~~~~~~~~f~~~fk~nf~~~ 59 (77)
T PF04854_consen 23 PATAALYYVVRKWVRDEEDSYLFRDFWRAFKQNFKQS 59 (77)
T ss_pred HHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHHH
Confidence 35566666776777776 3 45677777777777664
No 16
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=30.90 E-value=1.7e+02 Score=26.77 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 019636 234 MLVTAVILFIMNISLFAV 251 (338)
Q Consensus 234 ~~~~l~l~ll~~l~~~~i 251 (338)
.||.+..+++-.++.+++
T Consensus 8 ~~~~~~~illg~~iGg~~ 25 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFI 25 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345554444443333333
No 17
>PLN03074 auxin influx permease; Provisional
Probab=29.85 E-value=2.7e+02 Score=28.11 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 019636 272 LFGVICLLLLFKLMLFALVIQTVIYFVCKSYHH 304 (338)
Q Consensus 272 ~~g~v~~~l~~~v~l~~~vv~tV~Y~~CK~~~~ 304 (338)
+.|++...+.+++..+..-....+|.++++||.
T Consensus 77 v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~ 109 (473)
T PLN03074 77 LSGILFQIFYGLLGSWTAYLISVLYVEYRARKE 109 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345566666777777776666667877666554
No 18
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=29.55 E-value=4.1e+02 Score=23.74 Aligned_cols=32 Identities=9% Similarity=0.209 Sum_probs=24.3
Q ss_pred HhhHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Q 019636 224 IKSQALIKGKMLVTAVILFIMNISLFAVQLIF 255 (338)
Q Consensus 224 ~rS~~L~kG~~~~~l~l~ll~~l~~~~i~~~~ 255 (338)
++|++..||++++..++.++..++...++...
T Consensus 8 ~~Ak~~L~gn~~~~vl~~l~~~li~~~~~~~~ 39 (243)
T PF06161_consen 8 RQAKEQLKGNWGKAVLICLLIILISSLISFLI 39 (243)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999988888777655554443
No 19
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.28 E-value=1e+02 Score=20.55 Aligned_cols=15 Identities=0% Similarity=0.295 Sum_probs=7.8
Q ss_pred HHHHhhccCcccccc
Q 019636 293 TVIYFVCKSYHHENI 307 (338)
Q Consensus 293 tV~Y~~CK~~~~e~i 307 (338)
.+.++..++++.++.
T Consensus 24 gi~~w~~~~~~k~~~ 38 (49)
T PF05545_consen 24 GIVIWAYRPRNKKRF 38 (49)
T ss_pred HHHHHHHcccchhhH
Confidence 344555566655443
No 20
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=27.60 E-value=37 Score=26.98 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhccCccccccchhhhhhhhhhhcCcccccCCCCc
Q 019636 287 FALVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKDI 331 (338)
Q Consensus 287 ~~~vv~tV~Y~~CK~~~~e~id~~~l~~~l~~y~~~y~~l~~~~~ 331 (338)
+.|+.+-+| |.-.+ +....+..++|.+.|..+..++.
T Consensus 47 vgW~~sYlf----RV~t~----~MTy~~Q~k~Ye~a~~~~~~~~l 83 (104)
T PF11460_consen 47 VGWVSSYLF----RVVTG----KMTYMQQRKDYEEAVDQLTNEEL 83 (104)
T ss_pred HHHHhHHHh----hhccC----CCcHHHHHHHHHHHHHHHhHHHH
Confidence 566666555 22222 22334556666666655544433
No 21
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=24.14 E-value=2.4e+02 Score=23.55 Aligned_cols=54 Identities=9% Similarity=-0.042 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcc--ccccchhhhhhhhhhhcCcccccCCCCcc
Q 019636 279 LLLFKLMLFALVIQTVIYFVCKSYH--HENIDKSELSDHLEVYLGEYVPLKSKDIQ 332 (338)
Q Consensus 279 ~l~~~v~l~~~vv~tV~Y~~CK~~~--~e~id~~~l~~~l~~y~~~y~~l~~~~~~ 332 (338)
..-|++.++...+.-++|--|..|+ +..--||=-+..+++=.+|-++|.++++.
T Consensus 71 pVcsllsPllsLM~fI~gtL~~lrrvsgcisik~w~~~q~~~q~~~~~~ldf~~ve 126 (164)
T PF10624_consen 71 PVCSLLSPLLSLMVFIIGTLYELRRVSGCISIKEWMQSQVNEQYDEDLHLDFESVE 126 (164)
T ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHhhcceeHHHHHHHHHhhhcCccccccccCcc
Confidence 3446777777777777776554443 33222444444444333555888888874
No 22
>TIGR01566 ZF_HD_prot_N ZF-HD homeobox protein Cys/His-rich dimerization domain. This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.
Probab=23.69 E-value=32 Score=23.60 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=23.9
Q ss_pred HhhccCccccccchhhhhhhhhhhcCcccccCCCCcccccc
Q 019636 296 YFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKDIQLEHY 336 (338)
Q Consensus 296 Y~~CK~~~~e~id~~~l~~~l~~y~~~y~~l~~~~~~~~~~ 336 (338)
|.+|.+.|.-++...+ +|++ +||+|-+.++...+.|
T Consensus 2 Y~EC~kNHAa~~Gg~a----~DGC-gEFmps~g~~~~~~al 37 (53)
T TIGR01566 2 YKECLKNHAASIGGHA----LDGC-GEFMPSSGEEGDPESL 37 (53)
T ss_pred HHHHHHhhHHHhCCcc----cccc-cccccCCCCCCCCcce
Confidence 8899998876665221 2444 6899866666666654
No 23
>PHA03149 hypothetical protein; Provisional
Probab=22.19 E-value=38 Score=24.16 Aligned_cols=31 Identities=13% Similarity=0.352 Sum_probs=18.2
Q ss_pred HhhccCccccccchhhhhhhhhhhcCcccccCCCC
Q 019636 296 YFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKD 330 (338)
Q Consensus 296 Y~~CK~~~~e~id~~~l~~~l~~y~~~y~~l~~~~ 330 (338)
...||+||.- +|.+- +.++.| .||++.+-+|
T Consensus 5 ~SiCkRr~nP-lDV~G--~~Inv~-~DFE~fsE~~ 35 (66)
T PHA03149 5 CSICKRRPNP-LDTEG--KVINLP-DDFEELSETE 35 (66)
T ss_pred eeeecCCCCC-ccCCC--cEecch-hhhhhhCccc
Confidence 4568988754 36555 445555 3677765444
No 24
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=21.97 E-value=2.2e+02 Score=19.13 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhChhHHHHHHHHHHH
Q 019636 16 IYREACKVIITWRRIFSKITLALIL 40 (338)
Q Consensus 16 Il~ea~~i~~~n~~~f~~i~~ll~l 40 (338)
-.++..+-++||+....++..++.+
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~ 28 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLIL 28 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4688999999999888887776643
Done!