Query 019636
Match_columns 338
No_of_seqs 121 out of 211
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 04:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lo3_A SAGA-associated factor 49.9 3.4 0.00012 26.2 -0.0 24 296-320 17-40 (44)
2 2kwv_A RAD30 homolog B, DNA po 18.9 16 0.00055 23.6 -0.8 20 304-335 13-32 (48)
3 3mhs_E SAGA-associated factor 13.6 34 0.0012 25.6 -0.3 21 296-317 75-95 (96)
4 1d8j_A General transcription f 12.7 74 0.0025 23.1 1.2 13 7-19 28-40 (81)
5 1lpl_A Hypothetical 25.4 kDa p 11.5 55 0.0019 24.4 0.2 15 294-308 64-78 (95)
6 1zoq_C CREB-binding protein, i 10.6 1.8E+02 0.006 18.6 2.3 17 17-33 19-35 (47)
7 2lf6_A Effector protein hopab1 8.8 66 0.0022 23.9 -0.2 23 305-327 33-55 (101)
8 3tl8_B Effector protein hopab2 8.6 77 0.0026 24.1 0.1 24 304-327 49-72 (117)
9 3tx3_A Uncharacterized protein 8.6 9.3E+02 0.032 20.7 19.2 17 223-239 193-209 (249)
10 2kgn_A Protein STE5; MAPKKK, S 8.2 66 0.0023 17.4 -0.3 8 229-236 2-9 (26)
No 1
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=49.87 E-value=3.4 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=19.6
Q ss_pred HhhccCccccccchhhhhhhhhhhc
Q 019636 296 YFVCKSYHHENIDKSELSDHLEVYL 320 (338)
Q Consensus 296 Y~~CK~~~~e~id~~~l~~~l~~y~ 320 (338)
|..|++ .+.-+-.|++-||||.+-
T Consensus 17 YRvC~~-CgkPi~lsAIvdHLenhC 40 (44)
T 2lo3_A 17 YRVCEK-CGKPLALTAIVDHLENHC 40 (44)
T ss_dssp EEECTT-TCCEEETTTHHHHHHHCC
T ss_pred chhhcc-cCCcchHHHHHHHHHHHh
Confidence 677887 667788899999999874
No 2
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=18.89 E-value=16 Score=23.55 Aligned_cols=20 Identities=35% Similarity=0.425 Sum_probs=11.8
Q ss_pred ccccchhhhhhhhhhhcCcccccCCCCccccc
Q 019636 304 HENIDKSELSDHLEVYLGEYVPLKSKDIQLEH 335 (338)
Q Consensus 304 ~e~id~~~l~~~l~~y~~~y~~l~~~~~~~~~ 335 (338)
.++||.|-++ .|| .|+|.|=
T Consensus 13 P~~VD~eVF~-----------~LP-~dIQ~El 32 (48)
T 2kwv_A 13 PEGVDQEVFK-----------QLP-ADIQEEI 32 (48)
T ss_dssp CTTCCGGGTT-----------TSC-HHHHHHH
T ss_pred CCCCCHHHHH-----------HCc-HHHHHHH
Confidence 4677744433 366 6777653
No 3
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=13.62 E-value=34 Score=25.59 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=8.7
Q ss_pred HhhccCccccccchhhhhhhhh
Q 019636 296 YFVCKSYHHENIDKSELSDHLE 317 (338)
Q Consensus 296 Y~~CK~~~~e~id~~~l~~~l~ 317 (338)
|..|+. ++.-|-.+++-||||
T Consensus 75 YRvCn~-CGkPI~l~AIvDHLe 95 (96)
T 3mhs_E 75 YRVCEK-CGKPLALTAIVDHLE 95 (96)
T ss_dssp CEEETT-TCCEECGGGTTTCCC
T ss_pred chhhhc-cCCceeHHHHHHHhh
Confidence 334444 333333444444444
No 4
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=12.75 E-value=74 Score=23.05 Aligned_cols=13 Identities=23% Similarity=0.186 Sum_probs=10.7
Q ss_pred hcccCcHHHHHHH
Q 019636 7 EMQFLGIFGIYRE 19 (338)
Q Consensus 7 ~l~~Lg~~~Il~e 19 (338)
+-.||++-|||+|
T Consensus 28 ~~~PltL~EILde 40 (81)
T 1d8j_A 28 DTHPLTLDEILDE 40 (81)
T ss_dssp CCSCBCHHHHHHH
T ss_pred CCCCccHHHHHHH
Confidence 4567999999998
No 5
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=11.51 E-value=55 Score=24.42 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=10.4
Q ss_pred HHHhhccCccccccc
Q 019636 294 VIYFVCKSYHHENID 308 (338)
Q Consensus 294 V~Y~~CK~~~~e~id 308 (338)
+=||+|+..|+-=+.
T Consensus 64 ~rYF~C~p~~G~Fvr 78 (95)
T 1lpl_A 64 VRYFDCDPKYGGFVR 78 (95)
T ss_dssp EECSCCCTTSEEEEC
T ss_pred EEEeEeCCCEEEEEc
Confidence 458999888764333
No 6
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=10.55 E-value=1.8e+02 Score=18.56 Aligned_cols=17 Identities=0% Similarity=0.165 Sum_probs=12.9
Q ss_pred HHHHHHHHhhChhHHHH
Q 019636 17 YREACKVIITWRRIFSK 33 (338)
Q Consensus 17 l~ea~~i~~~n~~~f~~ 33 (338)
=.+.++|+++||.++..
T Consensus 19 qqqvl~ILksnPqLMAA 35 (47)
T 1zoq_C 19 QQQVLNILKSNPQLMAA 35 (47)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCHHHHHH
Confidence 35678899999987654
No 7
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=8.82 E-value=66 Score=23.94 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred cccchhhhhhhhhhhcCcccccC
Q 019636 305 ENIDKSELSDHLEVYLGEYVPLK 327 (338)
Q Consensus 305 e~id~~~l~~~l~~y~~~y~~l~ 327 (338)
+.+|+|.|..-+|.|.-...|+|
T Consensus 33 qGvdmerLr~Al~~~i~~~~piP 55 (101)
T 2lf6_A 33 EGVDMERLRTSLGRYIMSLEPLP 55 (101)
T ss_dssp HTCCHHHHHHHHHHHHSSSCCCC
T ss_pred hCCCHHHHHHHHHHHHHhcCCCC
Confidence 68999999999999987778888
No 8
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=8.59 E-value=77 Score=24.14 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.6
Q ss_pred ccccchhhhhhhhhhhcCcccccC
Q 019636 304 HENIDKSELSDHLEVYLGEYVPLK 327 (338)
Q Consensus 304 ~e~id~~~l~~~l~~y~~~y~~l~ 327 (338)
.+.+|+|.|..-+|.|.-...|+|
T Consensus 49 qqGvdmerLraAle~~im~~~piP 72 (117)
T 3tl8_B 49 QQGVNLEHLRTALERHVMQRLPIP 72 (117)
T ss_dssp HTTCCHHHHHHHHHHHHTTCCCCC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCC
Confidence 368999999999999987777887
No 9
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=8.57 E-value=9.3e+02 Score=20.69 Aligned_cols=17 Identities=6% Similarity=-0.066 Sum_probs=12.1
Q ss_pred HHhhHHHhcCChHHHHH
Q 019636 223 MIKSQALIKGKMLVTAV 239 (338)
Q Consensus 223 L~rS~~L~kG~~~~~l~ 239 (338)
.++..+..|.+|+..++
T Consensus 193 ~~~~~~~lr~~r~~~~~ 209 (249)
T 3tx3_A 193 FPRMRSELHQQRSKTLG 209 (249)
T ss_dssp HHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 45567788888877654
No 10
>2kgn_A Protein STE5; MAPKKK, STE11 SAM, STE50 SAM, cytoplasm, pheromone response, phosphoprotein, signaling protein; NMR {Synthetic} PDB: 2l4u_A
Probab=8.18 E-value=66 Score=17.42 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=4.7
Q ss_pred HhcCChHH
Q 019636 229 LIKGKMLV 236 (338)
Q Consensus 229 L~kG~~~~ 236 (338)
|.||++|+
T Consensus 2 lsrgkkwt 9 (26)
T 2kgn_A 2 LSRGKKWT 9 (26)
T ss_dssp HHHHGGGT
T ss_pred ccchhHHH
Confidence 45666665
Done!