Query 019636
Match_columns 338
No_of_seqs 121 out of 211
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 04:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019636.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019636hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tova_ b.34.10.1 (A:) Cytoske 32.9 4.9 0.00036 28.7 0.3 32 293-330 66-97 (98)
2 d1whla_ b.34.10.1 (A:) Cylindr 17.3 9.2 0.00067 27.0 -0.9 11 294-304 67-77 (95)
3 d2coza1 b.34.10.1 (A:8-116) Ce 13.9 18 0.0013 26.0 0.0 19 293-311 72-90 (109)
4 d1vola1 a.74.1.2 (A:113-207) T 13.5 37 0.0027 23.0 1.7 27 289-316 46-72 (95)
5 d2cp0a1 b.34.10.1 (A:7-89) CLI 12.9 13 0.00096 25.4 -1.0 11 295-305 60-70 (83)
6 d2e3ha1 b.34.10.1 (A:212-282) 12.7 18 0.0013 23.9 -0.3 12 294-305 49-60 (71)
7 d1whka_ b.34.10.1 (A:) Restin- 12.6 20 0.0015 24.9 -0.1 15 294-308 62-76 (91)
8 d2glia5 g.37.1.1 (A:229-257) F 11.6 44 0.0032 17.8 1.2 25 297-321 3-29 (29)
9 d1aisb1 a.74.1.2 (B:1108-1205) 11.3 47 0.0034 22.5 1.6 26 290-316 47-72 (98)
10 d2hqha1 b.34.10.1 (A:26-97) Dy 11.1 21 0.0016 23.5 -0.3 12 294-305 51-62 (72)
No 1
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=32.91 E-value=4.9 Score=28.68 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=19.6
Q ss_pred HHHHhhccCccccccchhhhhhhhhhhcCcccccCCCC
Q 019636 293 TVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKD 330 (338)
Q Consensus 293 tV~Y~~CK~~~~e~id~~~l~~~l~~y~~~y~~l~~~~ 330 (338)
-+-||+|+..|+-=+..+.+. .++|-|+..+|
T Consensus 66 g~~YF~c~~~~G~Fv~~~~v~------~gd~P~~d~de 97 (98)
T d1tova_ 66 GVRYFDCDPKYGGFVRPVDVK------VGDFPELSIDE 97 (98)
T ss_dssp TEECSCCCTTSEEEECGGGEE------ESCCCCCCCSC
T ss_pred CEEEEEcCCCCEEEeChhheE------ECCCCCCCccc
Confidence 345999999887544333332 25666666544
No 2
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.30 E-value=9.2 Score=26.98 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=8.1
Q ss_pred HHHhhccCccc
Q 019636 294 VIYFVCKSYHH 304 (338)
Q Consensus 294 V~Y~~CK~~~~ 304 (338)
+-||+||..|+
T Consensus 67 ~rYF~C~~~~G 77 (95)
T d1whla_ 67 KQLFQCDEDCG 77 (95)
T ss_dssp EECCCCCTTTE
T ss_pred EEEEecCCCcE
Confidence 45888987775
No 3
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.86 E-value=18 Score=25.97 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=12.9
Q ss_pred HHHHhhccCccccccchhh
Q 019636 293 TVIYFVCKSYHHENIDKSE 311 (338)
Q Consensus 293 tV~Y~~CK~~~~e~id~~~ 311 (338)
-+-||+||..|+-=+..+.
T Consensus 72 G~~YF~C~~~~GiFv~~~~ 90 (109)
T d2coza1 72 GIAYFECKEKHGIFAPPQK 90 (109)
T ss_dssp TEECCCCCSSCEEEECGGG
T ss_pred CEEEEecCCCcEEEeCHHH
Confidence 3569999998875444333
No 4
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.48 E-value=37 Score=22.97 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=17.2
Q ss_pred HHHHHHHHhhccCccccccchhhhhhhh
Q 019636 289 LVIQTVIYFVCKSYHHENIDKSELSDHL 316 (338)
Q Consensus 289 ~vv~tV~Y~~CK~~~~e~id~~~l~~~l 316 (338)
.++.+..|+.||. ++......++++..
T Consensus 46 ~i~AA~iY~acr~-~~~p~t~~eIa~~~ 72 (95)
T d1vola1 46 AIASACLYIACRQ-EGVPRTFKEICAVS 72 (95)
T ss_dssp HHHHHHHHHHHHH-TTCCCCHHHHHTTT
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 3566778999987 44445555566544
No 5
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.93 E-value=13 Score=25.40 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=8.6
Q ss_pred HHhhccCcccc
Q 019636 295 IYFVCKSYHHE 305 (338)
Q Consensus 295 ~Y~~CK~~~~e 305 (338)
=||+|+..|+-
T Consensus 60 rYF~C~~~~G~ 70 (83)
T d2cp0a1 60 RYFICPPKQGL 70 (83)
T ss_dssp ECCCCSSSCEE
T ss_pred EEeecCCCceE
Confidence 48999988764
No 6
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.65 E-value=18 Score=23.90 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=9.1
Q ss_pred HHHhhccCcccc
Q 019636 294 VIYFVCKSYHHE 305 (338)
Q Consensus 294 V~Y~~CK~~~~e 305 (338)
+-||+|+..|+-
T Consensus 49 ~~YF~c~~~~G~ 60 (71)
T d2e3ha1 49 TRYFQCQPKYGL 60 (71)
T ss_dssp EESCCCCTTCEE
T ss_pred EEEEecCCCCEE
Confidence 348999988764
No 7
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.60 E-value=20 Score=24.87 Aligned_cols=15 Identities=27% Similarity=0.416 Sum_probs=11.2
Q ss_pred HHHhhccCccccccc
Q 019636 294 VIYFVCKSYHHENID 308 (338)
Q Consensus 294 V~Y~~CK~~~~e~id 308 (338)
+-||+||..|+.=+.
T Consensus 62 ~~YF~C~~~~G~Fv~ 76 (91)
T d1whka_ 62 KRYFTCKPNYGVLVR 76 (91)
T ss_dssp EECCCCSTTCCCEEC
T ss_pred EEEeecCCCceEEeC
Confidence 459999998875444
No 8
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.58 E-value=44 Score=17.84 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=16.5
Q ss_pred hhccCcccc--ccchhhhhhhhhhhcC
Q 019636 297 FVCKSYHHE--NIDKSELSDHLEVYLG 321 (338)
Q Consensus 297 ~~CK~~~~e--~id~~~l~~~l~~y~~ 321 (338)
|.||...-. -.|.++|..|++..+|
T Consensus 3 Y~Ck~~gC~K~YtdPSSLRKH~k~~HG 29 (29)
T d2glia5 3 YVCKLPGCTKRYTDPSSLRKHVKTVHG 29 (29)
T ss_dssp EECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred eecccCCCCcccCCHHHHHHHHHhhCC
Confidence 456664322 3789999999876553
No 9
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=11.29 E-value=47 Score=22.52 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=18.3
Q ss_pred HHHHHHHhhccCccccccchhhhhhhh
Q 019636 290 VIQTVIYFVCKSYHHENIDKSELSDHL 316 (338)
Q Consensus 290 vv~tV~Y~~CK~~~~e~id~~~l~~~l 316 (338)
++.+..|+.||. +++.....++++..
T Consensus 47 iaaA~iY~Acr~-~~~~~t~~eIa~~~ 72 (98)
T d1aisb1 47 VMAACVYAACRL-LKVPRTLDEIADIA 72 (98)
T ss_dssp HHHHHHHHHHHH-HTCCCCHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCCCCCHHHHHHHH
Confidence 456778999988 45666667777755
No 10
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.09 E-value=21 Score=23.55 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=8.7
Q ss_pred HHHhhccCcccc
Q 019636 294 VIYFVCKSYHHE 305 (338)
Q Consensus 294 V~Y~~CK~~~~e 305 (338)
+=||+|+..|+-
T Consensus 51 ~~YF~C~~~~G~ 62 (72)
T d2hqha1 51 RKYFTCDEGHGI 62 (72)
T ss_dssp EESSCCCTTTEE
T ss_pred EEEEecCCCcEE
Confidence 348899987763
Done!