Query 019637
Match_columns 338
No_of_seqs 278 out of 1643
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0483 Transcription factor H 99.8 5E-21 1.1E-25 175.4 6.9 105 55-159 48-152 (198)
2 KOG0842 Transcription factor t 99.6 1.7E-16 3.6E-21 153.6 5.7 66 56-121 150-217 (307)
3 KOG0489 Transcription factor z 99.6 1.4E-16 3E-21 151.2 2.9 61 56-116 158-218 (261)
4 KOG0488 Transcription factor B 99.6 1.2E-15 2.5E-20 148.3 7.8 54 64-117 179-232 (309)
5 KOG0487 Transcription factor A 99.6 9.7E-16 2.1E-20 148.4 4.5 62 57-118 235-296 (308)
6 KOG0843 Transcription factor E 99.5 5.1E-15 1.1E-19 133.6 4.9 63 57-119 102-164 (197)
7 PF00046 Homeobox: Homeobox do 99.5 8E-15 1.7E-19 107.4 4.0 57 58-114 1-57 (57)
8 KOG0484 Transcription factor P 99.5 8.6E-15 1.9E-19 122.2 3.3 57 60-116 20-76 (125)
9 KOG0485 Transcription factor N 99.5 2.3E-14 4.9E-19 132.8 5.5 59 58-116 103-163 (268)
10 KOG0850 Transcription factor D 99.5 3.3E-14 7.1E-19 132.5 5.0 54 62-115 127-180 (245)
11 KOG0492 Transcription factor M 99.5 9.6E-14 2.1E-18 127.9 7.1 59 58-116 145-203 (246)
12 KOG0848 Transcription factor C 99.5 2.3E-14 4.9E-19 136.0 2.7 52 64-115 206-257 (317)
13 KOG0494 Transcription factor C 99.4 6.1E-14 1.3E-18 132.7 5.1 55 64-118 148-202 (332)
14 KOG0493 Transcription factor E 99.4 3.9E-13 8.5E-18 127.4 6.7 59 61-119 250-308 (342)
15 KOG2251 Homeobox transcription 99.4 2.6E-13 5.5E-18 125.9 4.7 61 57-117 37-97 (228)
16 cd00086 homeodomain Homeodomai 99.4 3.9E-13 8.4E-18 97.9 4.4 57 59-115 2-58 (59)
17 smart00389 HOX Homeodomain. DN 99.4 5E-13 1.1E-17 96.9 4.0 55 59-113 2-56 (56)
18 COG5576 Homeodomain-containing 99.3 9.9E-13 2.1E-17 116.9 5.1 63 55-117 49-111 (156)
19 KOG4577 Transcription factor L 99.3 2.2E-12 4.7E-17 123.8 4.7 92 52-144 162-253 (383)
20 KOG0844 Transcription factor E 99.3 1.6E-12 3.4E-17 125.6 3.4 61 58-118 182-242 (408)
21 TIGR01565 homeo_ZF_HD homeobox 99.3 6.4E-12 1.4E-16 94.9 5.2 52 58-109 2-57 (58)
22 KOG0486 Transcription factor P 99.2 1.2E-11 2.5E-16 119.9 4.7 55 64-118 119-173 (351)
23 KOG0491 Transcription factor B 99.2 2.9E-12 6.2E-17 114.6 -0.1 55 63-117 106-160 (194)
24 KOG3802 Transcription factor O 99.1 3.1E-11 6.7E-16 120.0 5.0 60 56-115 293-352 (398)
25 KOG0847 Transcription factor, 99.1 2.3E-11 4.9E-16 113.3 2.6 63 54-116 164-226 (288)
26 KOG0490 Transcription factor, 99.0 4.3E-10 9.3E-15 102.0 3.6 60 57-116 60-119 (235)
27 KOG0849 Transcription factor P 98.7 1.1E-08 2.4E-13 101.4 4.1 58 59-116 178-235 (354)
28 KOG1168 Transcription factor A 98.7 1.3E-08 2.7E-13 98.3 3.6 63 53-115 305-367 (385)
29 KOG0775 Transcription factor S 98.5 8.1E-08 1.8E-12 92.1 4.0 51 64-114 183-233 (304)
30 KOG0774 Transcription factor P 98.0 2.1E-06 4.5E-11 82.2 2.5 59 57-115 188-249 (334)
31 PF05920 Homeobox_KN: Homeobox 98.0 2.2E-06 4.7E-11 60.2 0.8 34 78-111 7-40 (40)
32 PF02183 HALZ: Homeobox associ 97.7 5.4E-05 1.2E-09 54.6 4.9 44 115-158 1-44 (45)
33 KOG0490 Transcription factor, 97.6 5.8E-05 1.3E-09 68.5 3.4 57 60-116 156-212 (235)
34 KOG2252 CCAAT displacement pro 97.3 0.00018 4E-09 74.8 3.9 56 57-112 420-475 (558)
35 KOG1146 Homeobox protein [Gene 96.8 0.001 2.2E-08 75.1 3.6 62 56-117 902-963 (1406)
36 KOG0773 Transcription factor M 95.7 0.0091 2E-07 58.5 3.7 53 63-115 245-300 (342)
37 PF11569 Homez: Homeodomain le 95.3 0.0049 1.1E-07 46.6 0.2 42 68-109 9-50 (56)
38 KOG3623 Homeobox transcription 90.6 0.18 3.9E-06 54.9 2.8 48 69-116 568-615 (1007)
39 PRK09413 IS2 repressor TnpA; R 90.5 0.74 1.6E-05 38.9 5.9 42 60-106 9-51 (121)
40 PF02183 HALZ: Homeobox associ 89.6 0.72 1.6E-05 33.3 4.4 35 124-158 3-37 (45)
41 PF04218 CENP-B_N: CENP-B N-te 86.4 0.88 1.9E-05 33.5 3.3 46 59-109 2-47 (53)
42 PF10224 DUF2205: Predicted co 73.7 15 0.00032 29.8 6.6 48 111-158 15-62 (80)
43 PF00170 bZIP_1: bZIP transcri 70.0 26 0.00057 26.2 6.9 35 121-155 28-62 (64)
44 PF06156 DUF972: Protein of un 67.8 16 0.00034 30.9 5.8 47 115-161 11-57 (107)
45 PF06005 DUF904: Protein of un 63.3 30 0.00066 27.3 6.2 35 120-154 19-53 (72)
46 KOG4196 bZIP transcription fac 62.1 63 0.0014 28.7 8.5 79 62-156 22-111 (135)
47 KOG4005 Transcription factor X 60.3 23 0.0005 34.5 6.0 42 116-157 94-135 (292)
48 PRK13169 DNA replication intia 60.2 31 0.00067 29.5 6.2 44 116-159 12-55 (110)
49 PF01527 HTH_Tnp_1: Transposas 59.6 2 4.2E-05 32.5 -1.1 43 60-106 3-45 (76)
50 PF04967 HTH_10: HTH DNA bindi 58.4 11 0.00024 28.1 2.9 38 64-101 1-40 (53)
51 PF06005 DUF904: Protein of un 55.4 61 0.0013 25.6 6.7 44 114-157 20-63 (72)
52 KOG3119 Basic region leucine z 55.2 35 0.00076 33.0 6.5 48 109-159 208-255 (269)
53 COG4467 Regulator of replicati 53.0 33 0.00072 29.5 5.1 43 116-158 12-54 (114)
54 smart00340 HALZ homeobox assoc 53.0 23 0.0005 25.7 3.5 32 116-154 2-33 (44)
55 cd06171 Sigma70_r4 Sigma70, re 51.0 8.2 0.00018 25.8 1.1 42 64-110 11-52 (55)
56 PF00170 bZIP_1: bZIP transcri 49.9 62 0.0013 24.2 5.8 30 127-156 27-56 (64)
57 cd00569 HTH_Hin_like Helix-tur 48.2 19 0.00042 21.3 2.4 37 63-104 5-41 (42)
58 KOG0709 CREB/ATF family transc 47.9 71 0.0015 33.7 7.6 90 62-158 219-318 (472)
59 PF04545 Sigma70_r4: Sigma-70, 47.3 16 0.00034 25.7 2.1 38 63-105 4-41 (50)
60 KOG4005 Transcription factor X 46.8 55 0.0012 31.9 6.2 41 116-156 101-141 (292)
61 PRK00888 ftsB cell division pr 46.2 39 0.00086 28.3 4.6 27 128-154 36-62 (105)
62 PF13443 HTH_26: Cro/C1-type H 45.1 11 0.00025 27.3 1.1 39 86-124 12-50 (63)
63 smart00338 BRLZ basic region l 44.7 98 0.0021 23.1 6.2 34 123-156 30-63 (65)
64 KOG3156 Uncharacterized membra 44.2 55 0.0012 31.2 5.7 48 118-165 100-148 (220)
65 smart00340 HALZ homeobox assoc 43.9 39 0.00084 24.5 3.5 21 138-158 10-30 (44)
66 COG4026 Uncharacterized protei 43.5 53 0.0012 31.8 5.5 28 127-154 157-184 (290)
67 KOG4403 Cell surface glycoprot 43.4 56 0.0012 34.4 6.0 61 101-161 228-323 (575)
68 KOG4571 Activating transcripti 41.8 81 0.0018 31.4 6.6 49 110-159 240-288 (294)
69 cd04766 HTH_HspR Helix-Turn-He 41.6 66 0.0014 25.6 5.1 70 87-157 4-89 (91)
70 COG3413 Predicted DNA binding 40.6 28 0.0006 32.0 3.2 38 63-100 155-194 (215)
71 PF07716 bZIP_2: Basic region 39.3 1.3E+02 0.0028 21.8 5.9 27 128-154 27-53 (54)
72 PF14775 NYD-SP28_assoc: Sperm 37.6 66 0.0014 24.5 4.2 32 127-158 27-58 (60)
73 PF06156 DUF972: Protein of un 37.1 79 0.0017 26.7 5.1 40 115-154 18-57 (107)
74 PF08172 CASP_C: CASP C termin 36.6 95 0.0021 29.9 6.2 46 109-154 90-135 (248)
75 KOG0249 LAR-interacting protei 35.2 1.8E+02 0.0038 32.7 8.4 48 109-156 213-260 (916)
76 COG3074 Uncharacterized protei 34.5 1.1E+02 0.0024 24.5 5.2 36 120-155 26-61 (79)
77 PF04899 MbeD_MobD: MbeD/MobD 34.1 1.2E+02 0.0026 24.0 5.3 39 119-157 21-59 (70)
78 PRK13729 conjugal transfer pil 33.7 98 0.0021 32.8 6.1 44 113-156 77-120 (475)
79 PF15058 Speriolin_N: Sperioli 33.5 79 0.0017 29.8 4.9 40 122-162 8-47 (200)
80 smart00338 BRLZ basic region l 33.3 1.3E+02 0.0027 22.5 5.2 30 127-156 27-56 (65)
81 PF07407 Seadorna_VP6: Seadorn 33.2 46 0.001 33.8 3.5 29 129-157 35-63 (420)
82 PF12808 Mto2_bdg: Micro-tubul 33.2 1.3E+02 0.0029 22.5 5.1 38 121-158 10-47 (52)
83 PRK13169 DNA replication intia 32.6 1E+02 0.0022 26.4 5.0 40 115-154 18-57 (110)
84 PRK03975 tfx putative transcri 32.0 44 0.00096 29.6 2.9 47 61-113 4-50 (141)
85 PF00424 REV: REV protein (ant 32.0 58 0.0013 27.1 3.4 33 69-117 14-48 (91)
86 PF10668 Phage_terminase: Phag 31.6 14 0.0003 28.4 -0.3 18 87-104 25-42 (60)
87 TIGR02449 conserved hypothetic 31.1 1.7E+02 0.0037 22.9 5.6 30 126-155 14-43 (65)
88 PF07716 bZIP_2: Basic region 30.7 1.5E+02 0.0032 21.5 5.0 25 124-148 30-54 (54)
89 KOG4343 bZIP transcription fac 29.5 90 0.002 33.7 5.1 30 130-159 306-335 (655)
90 PF08826 DMPK_coil: DMPK coile 29.3 2.4E+02 0.0051 21.7 6.1 41 117-157 16-56 (61)
91 PF08281 Sigma70_r4_2: Sigma-7 28.8 41 0.00088 23.7 1.8 38 64-106 11-48 (54)
92 PF05700 BCAS2: Breast carcino 28.7 2E+02 0.0043 26.9 6.8 43 117-159 173-215 (221)
93 PF15058 Speriolin_N: Sperioli 28.6 70 0.0015 30.1 3.7 31 126-156 5-35 (200)
94 PRK13922 rod shape-determining 27.9 1.1E+02 0.0024 29.0 5.1 33 127-159 77-112 (276)
95 PRK15422 septal ring assembly 26.8 2.5E+02 0.0053 22.9 6.0 25 131-155 44-68 (79)
96 KOG3119 Basic region leucine z 26.6 1.6E+02 0.0035 28.5 6.0 32 127-158 216-247 (269)
97 PF07334 IFP_35_N: Interferon- 26.6 81 0.0017 25.4 3.2 24 136-159 3-26 (76)
98 cd04765 HTH_MlrA-like_sg2 Heli 26.4 1E+02 0.0022 25.2 4.0 34 61-106 36-69 (99)
99 PRK14127 cell division protein 26.1 1.1E+02 0.0023 26.2 4.1 32 128-159 32-63 (109)
100 TIGR01069 mutS2 MutS2 family p 25.9 1.7E+02 0.0036 32.6 6.7 21 82-102 480-500 (771)
101 KOG1146 Homeobox protein [Gene 25.0 22 0.00049 41.6 -0.2 57 61-117 448-504 (1406)
102 cd04779 HTH_MerR-like_sg4 Heli 24.6 3.5E+02 0.0076 23.5 7.2 35 61-108 35-69 (134)
103 PF09607 BrkDBD: Brinker DNA-b 24.5 50 0.0011 25.3 1.6 42 63-106 5-47 (58)
104 PRK10884 SH3 domain-containing 24.4 2.1E+02 0.0045 26.9 6.1 24 131-154 137-160 (206)
105 KOG4343 bZIP transcription fac 23.7 1.4E+02 0.0031 32.2 5.3 34 121-154 304-337 (655)
106 PRK15422 septal ring assembly 23.7 2.1E+02 0.0046 23.3 5.1 36 121-156 27-62 (79)
107 TIGR00219 mreC rod shape-deter 23.6 1.4E+02 0.0031 29.0 5.1 18 143-160 94-111 (283)
108 PRK09646 RNA polymerase sigma 23.6 81 0.0018 27.9 3.1 42 64-110 143-184 (194)
109 PRK00118 putative DNA-binding 23.6 2.5E+02 0.0054 23.6 5.8 43 64-111 18-60 (104)
110 PF10224 DUF2205: Predicted co 23.4 3.2E+02 0.0069 22.2 6.1 42 114-155 25-66 (80)
111 TIGR02937 sigma70-ECF RNA poly 22.6 79 0.0017 25.3 2.6 40 64-108 111-150 (158)
112 PRK09652 RNA polymerase sigma 22.3 80 0.0017 26.8 2.7 38 64-106 129-166 (182)
113 PRK10884 SH3 domain-containing 22.2 3.2E+02 0.0069 25.6 6.9 33 123-155 136-168 (206)
114 PRK06759 RNA polymerase factor 22.2 76 0.0016 26.6 2.5 39 64-107 107-145 (154)
115 KOG0483 Transcription factor H 22.2 1.1E+02 0.0025 28.6 3.9 39 122-160 108-146 (198)
116 PF04977 DivIC: Septum formati 21.7 1.9E+02 0.0042 21.6 4.5 19 134-152 32-50 (80)
117 PRK00409 recombination and DNA 21.5 2.2E+02 0.0048 31.8 6.5 21 82-102 485-505 (782)
118 cd01106 HTH_TipAL-Mta Helix-Tu 21.4 2.8E+02 0.0061 22.3 5.7 35 61-108 36-70 (103)
119 PRK09642 RNA polymerase sigma 21.3 1E+02 0.0022 26.1 3.1 45 64-113 107-151 (160)
120 PF07798 DUF1640: Protein of u 21.3 1.6E+02 0.0035 26.4 4.6 35 133-167 73-107 (177)
121 PRK12543 RNA polymerase sigma 21.2 1.4E+02 0.0031 25.9 4.2 45 64-113 118-162 (179)
122 PF12709 Kinetocho_Slk19: Cent 21.1 2.9E+02 0.0063 22.8 5.5 43 117-159 32-75 (87)
123 PF13936 HTH_38: Helix-turn-he 21.1 38 0.00082 23.7 0.4 39 62-105 3-41 (44)
124 PRK11546 zraP zinc resistance 21.0 1.4E+02 0.0029 26.8 3.9 31 129-159 78-108 (143)
125 PRK12526 RNA polymerase sigma 21.0 89 0.0019 28.1 2.9 43 64-111 154-196 (206)
126 COG4467 Regulator of replicati 20.4 1.7E+02 0.0038 25.2 4.2 36 116-151 19-54 (114)
127 PF02796 HTH_7: Helix-turn-hel 20.0 54 0.0012 22.9 1.0 37 63-104 5-41 (45)
No 1
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.83 E-value=5e-21 Score=175.37 Aligned_cols=105 Identities=59% Similarity=0.893 Sum_probs=96.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHHHHHHHHhhhHHHhhh
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLN 134 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler~~~~lka~~d~l~~~ 134 (338)
.....|++||+.+|+..||..|+...++.+.++..||++|||.+|||+|||||||||||.++++.+++.||..++.|..+
T Consensus 48 ~~~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~ 127 (198)
T KOG0483|consen 48 SKGKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSE 127 (198)
T ss_pred cccccccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhh
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 135 YDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 135 ~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
++.++.++..|+.++..++..+...
T Consensus 128 ~~~Lq~e~~eL~~~~~~~~~~~~~~ 152 (198)
T KOG0483|consen 128 NDRLQSEVQELVAELSSLKREMQKS 152 (198)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhccC
Confidence 9999988888888888777776553
No 2
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.64 E-value=1.7e-16 Score=153.64 Aligned_cols=66 Identities=38% Similarity=0.597 Sum_probs=59.3
Q ss_pred CCCCCCCc--CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHHHH
Q 019637 56 HVSEKKRR--LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDY 121 (338)
Q Consensus 56 ~~kkKRrR--fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler~~ 121 (338)
.++|||+| |+..|+.+||+.|...+|++..+|+.||..|.|+++||||||||||-|.||+++++.+
T Consensus 150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~ 217 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKAL 217 (307)
T ss_pred cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhhh
Confidence 44555555 9999999999999999999999999999999999999999999999999998776653
No 3
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.62 E-value=1.4e-16 Score=151.18 Aligned_cols=61 Identities=33% Similarity=0.686 Sum_probs=56.0
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
..||.|+.||..|+.+||+.|..++|++..+|.+||..|.|++|||||||||||+||||..
T Consensus 158 ~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~ 218 (261)
T KOG0489|consen 158 KSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKEN 218 (261)
T ss_pred CCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Confidence 3455555599999999999999999999999999999999999999999999999999864
No 4
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.60 E-value=1.2e-15 Score=148.35 Aligned_cols=54 Identities=43% Similarity=0.714 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
||..|+..||+.|++..|++..+|.+||+.|||+..||++||||||+|||+...
T Consensus 179 FT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a 232 (309)
T KOG0488|consen 179 FSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTA 232 (309)
T ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999643
No 5
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.58 E-value=9.7e-16 Score=148.43 Aligned_cols=62 Identities=34% Similarity=0.508 Sum_probs=56.2
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
.||||..+|..|+.+||+.|-.|.|++.+.|.+|++.|+|++|||+|||||||+|.||..++
T Consensus 235 ~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 235 GRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhh
Confidence 34455559999999999999999999999999999999999999999999999999986543
No 6
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.54 E-value=5.1e-15 Score=133.60 Aligned_cols=63 Identities=35% Similarity=0.491 Sum_probs=56.9
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler 119 (338)
.|+.|+.||.+|+..||..|+.++|....+|++||+.|+|++.||+|||||||+|.||.+.+.
T Consensus 102 ~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 102 PKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 344455599999999999999999999999999999999999999999999999999976543
No 7
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.52 E-value=8e-15 Score=107.43 Aligned_cols=57 Identities=42% Similarity=0.647 Sum_probs=53.9
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
+++|++||.+|+.+|+..|..++||+..++..||..|||+..+|++||+|||+++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 356777999999999999999999999999999999999999999999999999985
No 8
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.50 E-value=8.6e-15 Score=122.21 Aligned_cols=57 Identities=28% Similarity=0.525 Sum_probs=53.2
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
-|+.||..|+..||+.|...+||++..|++||.+++|++.+|+|||||||||.|++.
T Consensus 20 IRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 20 IRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred hhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHH
Confidence 344499999999999999999999999999999999999999999999999999853
No 9
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.49 E-value=2.3e-14 Score=132.81 Aligned_cols=59 Identities=42% Similarity=0.684 Sum_probs=54.4
Q ss_pred CCCCCc--CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRR--LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrR--fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+|||+| |+..|+..||..|+..+|++..+|..||++|.|++.||||||||||.||||+-
T Consensus 103 RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 103 RKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 444444 99999999999999999999999999999999999999999999999999863
No 10
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.47 E-value=3.3e-14 Score=132.46 Aligned_cols=54 Identities=37% Similarity=0.601 Sum_probs=51.5
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
+.++.-||..|.+.|++++|+--.+|.+||..|||+..||||||||||.|.||.
T Consensus 127 TIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl 180 (245)
T KOG0850|consen 127 TIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKL 180 (245)
T ss_pred ccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHH
Confidence 349999999999999999999999999999999999999999999999999984
No 11
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.46 E-value=9.6e-14 Score=127.87 Aligned_cols=59 Identities=32% Similarity=0.535 Sum_probs=54.2
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
|+.|+.||..|+..||+.|...+|+++.+|.+++..|.|++.||+|||||||+|.||-|
T Consensus 145 RkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQ 203 (246)
T KOG0492|consen 145 RKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQ 203 (246)
T ss_pred CCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHH
Confidence 33444599999999999999999999999999999999999999999999999999854
No 12
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.46 E-value=2.3e-14 Score=136.04 Aligned_cols=52 Identities=42% Similarity=0.634 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
+|..|+.+||+.|...+|.++.++.+||..|||++|||||||||||||+||.
T Consensus 206 YTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~ 257 (317)
T KOG0848|consen 206 YTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKD 257 (317)
T ss_pred ecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999985
No 13
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.45 E-value=6.1e-14 Score=132.74 Aligned_cols=55 Identities=31% Similarity=0.561 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
||..|+..||+.|+..+||+...|+-||.++.|.+.+|+|||||||+||||+...
T Consensus 148 FT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 148 FTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred hhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999986443
No 14
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.40 E-value=3.9e-13 Score=127.42 Aligned_cols=59 Identities=34% Similarity=0.642 Sum_probs=54.4
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHH
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler 119 (338)
|+.||.+||..|+..|+.++|++..+|.+||.+|||.+.||+|||||+|+|.||.+--+
T Consensus 250 RTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTgsk 308 (342)
T KOG0493|consen 250 RTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTGSK 308 (342)
T ss_pred cccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccCCC
Confidence 33499999999999999999999999999999999999999999999999999865444
No 15
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.39 E-value=2.6e-13 Score=125.86 Aligned_cols=61 Identities=28% Similarity=0.437 Sum_probs=55.8
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
.+|.|++|+..|+++||..|.+.+||+...|++||.+|+|.+.+|+|||.|||+|+|+++.
T Consensus 37 qRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~ 97 (228)
T KOG2251|consen 37 QRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQ 97 (228)
T ss_pred cccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhh
Confidence 3444556999999999999999999999999999999999999999999999999998654
No 16
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.38 E-value=3.9e-13 Score=97.91 Aligned_cols=57 Identities=46% Similarity=0.738 Sum_probs=53.1
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 59 kKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
+++.+++..|+.+|+.+|..++||+..++..||.++||+.+||++||+|||++.++.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 345569999999999999999999999999999999999999999999999998863
No 17
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.36 E-value=5e-13 Score=96.90 Aligned_cols=55 Identities=45% Similarity=0.792 Sum_probs=51.0
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 59 kKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
+.+.+++.+|+.+|+..|..++||+..++..||..+||+..||++||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 3455699999999999999999999999999999999999999999999999864
No 18
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.34 E-value=9.9e-13 Score=116.89 Aligned_cols=63 Identities=33% Similarity=0.582 Sum_probs=58.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
...+++|+|.|..|+.+|++.|..++||+...|..|+..|+|+++-|++||||||++.|+...
T Consensus 49 ~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~ 111 (156)
T COG5576 49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS 111 (156)
T ss_pred CcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcc
Confidence 456778888999999999999999999999999999999999999999999999999998644
No 19
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.29 E-value=2.2e-12 Score=123.84 Aligned_cols=92 Identities=23% Similarity=0.383 Sum_probs=74.4
Q ss_pred cCCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHHHHHHHHhhhHHH
Q 019637 52 ESGGHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDAL 131 (338)
Q Consensus 52 e~~~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler~~~~lka~~d~l 131 (338)
++.+..|+.|+.+|+.|++.|+.+|...++|....|++|+.++||..|+|||||||||||+||-+...-...|.+-+..+
T Consensus 162 ~gd~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrsm 241 (383)
T KOG4577|consen 162 EGDASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRSM 241 (383)
T ss_pred ccccccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHHh
Confidence 34455677777799999999999999999999999999999999999999999999999999855544455677777766
Q ss_pred hhhhhhhHHHHHH
Q 019637 132 KLNYDSLQHDNEA 144 (338)
Q Consensus 132 ~~~~dsl~~ene~ 144 (338)
+.. .+-+.+++.
T Consensus 242 K~s-gs~r~ekds 253 (383)
T KOG4577|consen 242 KRS-GSSRAEKDS 253 (383)
T ss_pred hcc-CCccccccc
Confidence 655 444444443
No 20
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.28 E-value=1.6e-12 Score=125.58 Aligned_cols=61 Identities=34% Similarity=0.554 Sum_probs=55.6
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
++-|+-||.+||..||+.|-+..|-+..+|.+||..|+|++..|||||||||+|.||+.+.
T Consensus 182 RRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 182 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhh
Confidence 3444459999999999999999999999999999999999999999999999999997653
No 21
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.26 E-value=6.4e-12 Score=94.88 Aligned_cols=52 Identities=15% Similarity=0.360 Sum_probs=48.6
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCC----CCHHHHHHHHHHhCCCCceEeehhhhhH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENK----LEPERKVKLAQELGLQPRQVAVWFQNRR 109 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~y----Ps~~~R~eLA~~LgLserQVkVWFQNRR 109 (338)
++.|+.||.+|+..|+..|...+| |+...+.+||..|||++++|+|||||.+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 456667999999999999999999 9999999999999999999999999964
No 22
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.20 E-value=1.2e-11 Score=119.86 Aligned_cols=55 Identities=27% Similarity=0.565 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
|+..|+..||..|.+++||+...|++||..++|++.+|+|||.|||+||||+...
T Consensus 119 FtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN 173 (351)
T KOG0486|consen 119 FTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERN 173 (351)
T ss_pred hHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999986543
No 23
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.19 E-value=2.9e-12 Score=114.65 Aligned_cols=55 Identities=40% Similarity=0.572 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
.|+..|+..||+.|+..+|++..+|.+||..|+|++.||+.||||||+|.||.+.
T Consensus 106 vfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r 160 (194)
T KOG0491|consen 106 VFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQR 160 (194)
T ss_pred cccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999999999999999999999999999999999999998654
No 24
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.15 E-value=3.1e-11 Score=120.02 Aligned_cols=60 Identities=32% Similarity=0.443 Sum_probs=54.5
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
++||||+.|....+..||+.|..|++|+..++..||.+|+|...+|+|||+|||.|.||.
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~ 352 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRI 352 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccC
Confidence 344445559999999999999999999999999999999999999999999999999984
No 25
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.12 E-value=2.3e-11 Score=113.26 Aligned_cols=63 Identities=37% Similarity=0.683 Sum_probs=56.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 54 GGHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 54 ~~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
.++++..|..|+-.|+..||..|...+||-.+.|.+||..+|+++.||+|||||||+||||+.
T Consensus 164 dG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkh 226 (288)
T KOG0847|consen 164 NGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKH 226 (288)
T ss_pred CccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhh
Confidence 344555555699999999999999999999999999999999999999999999999999874
No 26
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.95 E-value=4.3e-10 Score=102.00 Aligned_cols=60 Identities=28% Similarity=0.342 Sum_probs=54.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
.++.|+.|+..|+.+||+.|...+||+...|+.||..+++++..|+|||||||++|+++.
T Consensus 60 ~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 60 KRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred ccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhh
Confidence 344455599999999999999999999999999999999999999999999999999853
No 27
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.69 E-value=1.1e-08 Score=101.43 Aligned_cols=58 Identities=36% Similarity=0.631 Sum_probs=53.9
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 59 kKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+.|+.|+..|+..|++.|++++||+...|++||.++++++.+|+|||+|||++++|..
T Consensus 178 r~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 178 RNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred ccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcc
Confidence 3345599999999999999999999999999999999999999999999999999853
No 28
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.67 E-value=1.3e-08 Score=98.32 Aligned_cols=63 Identities=29% Similarity=0.517 Sum_probs=57.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 53 SGGHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 53 ~~~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
.++.+||||+.+.....+.||.+|...++|+.+.+..||.+|+|...+|+|||+|.|.|.||.
T Consensus 305 ~~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm 367 (385)
T KOG1168|consen 305 PGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 367 (385)
T ss_pred CccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHh
Confidence 445566677778889999999999999999999999999999999999999999999999985
No 29
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.50 E-value=8.1e-08 Score=92.09 Aligned_cols=51 Identities=29% Similarity=0.428 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
|...-+.+|..+|..++||++.++.+||+.+||+..||-.||.|||.|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 566778899999999999999999999999999999999999999999984
No 30
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=98.05 E-value=2.1e-06 Score=82.22 Aligned_cols=59 Identities=29% Similarity=0.461 Sum_probs=53.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFE---VENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~---~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
.++|||.|+..-..+|..+|. .++||+.+.+++||++++++..||-.||.|+|-++||.
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhh
Confidence 355666699999999999996 58899999999999999999999999999999999974
No 31
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.97 E-value=2.2e-06 Score=60.22 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=28.9
Q ss_pred hcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHH
Q 019637 78 VENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (338)
Q Consensus 78 ~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK 111 (338)
.++||+.+++..||+++||+..||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4789999999999999999999999999999875
No 32
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.75 E-value=5.4e-05 Score=54.63 Aligned_cols=44 Identities=61% Similarity=0.900 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 115 kqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
+|+++++..|+++|+.|+.++++|..||+.|++++..|+.++..
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 47899999999999999999999999999999999999998863
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.55 E-value=5.8e-05 Score=68.52 Aligned_cols=57 Identities=33% Similarity=0.635 Sum_probs=52.4
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
.++.+...|+..|...|....+|+...+..|+..+|++++.|++||||+|++.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~ 212 (235)
T KOG0490|consen 156 PRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHK 212 (235)
T ss_pred CccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhc
Confidence 344488999999999999999999999999999999999999999999999999864
No 34
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.31 E-value=0.00018 Score=74.81 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=50.3
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHh
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 112 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~ 112 (338)
.||.|..||..|...|..+|+.+++|+.+..+.|+.+|+|..+.|.+||-|-|.|.
T Consensus 420 ~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 420 TKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred CCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 33334449999999999999999999999999999999999999999999988875
No 35
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.76 E-value=0.001 Score=75.14 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=56.2
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
.++.+|++++..|+..|..+|....+|...+.+.|...+++..+.|+|||||-|+|.|+..+
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 34556667999999999999999999999999999999999999999999999999998654
No 36
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=95.72 E-value=0.0091 Score=58.51 Aligned_cols=53 Identities=28% Similarity=0.344 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 63 RLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
.+....+.+|+.+... .+||+...+..||+++||+..||.+||-|.|-|..+-
T Consensus 245 ~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p 300 (342)
T KOG0773|consen 245 GLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKP 300 (342)
T ss_pred CCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCc
Confidence 4999999999988432 5799999999999999999999999999998887764
No 37
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=95.33 E-value=0.0049 Score=46.60 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhH
Q 019637 68 QVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRR 109 (338)
Q Consensus 68 Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRR 109 (338)
.+..|+.+|...+.+.......|..+.+|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 356699999999999999999999999999999999997554
No 38
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=90.56 E-value=0.18 Score=54.86 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=44.6
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 69 VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 69 l~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+.+|..+|..|..|+.+....+|.+.||+.+.|+.||+++++....-.
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhc
Confidence 778999999999999999999999999999999999999999887643
No 39
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=90.50 E-value=0.74 Score=38.92 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=28.1
Q ss_pred CCCcCCHHHHH-HHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 60 KKRRLSVDQVK-ALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 60 KRrRfT~~Ql~-~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
++++++.++.. ++...+. +.. ...++|+++|+++.+|..|.+
T Consensus 9 ~rr~ys~EfK~~aV~~~~~-~g~----sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFE-PGM----TVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCCCHHHHHHHHHHHHc-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34567777644 3433333 332 356789999999999999954
No 40
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.64 E-value=0.72 Score=33.31 Aligned_cols=35 Identities=43% Similarity=0.721 Sum_probs=30.8
Q ss_pred HHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 124 LKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 124 lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
+...|+.|+..+++|..++++|..|+..|++.+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999988753
No 41
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=86.36 E-value=0.88 Score=33.46 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=32.7
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhH
Q 019637 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRR 109 (338)
Q Consensus 59 kKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRR 109 (338)
++|+.+|.++-..+-..++... ....||+++|++..+|..|..|+.
T Consensus 2 rkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 2 RKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCHH
T ss_pred CCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhHH
Confidence 4566699888887777777665 477899999999999999988753
No 42
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=73.74 E-value=15 Score=29.76 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=38.0
Q ss_pred HhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 111 RWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 111 K~Kkkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
+..+..+.++...|+...+.|....+.++.++++|..|+.-|+..+..
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777888888888888899999999999999988887753
No 43
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=69.99 E-value=26 Score=26.22 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=21.9
Q ss_pred HHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 019637 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (338)
Q Consensus 121 ~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~ 155 (338)
...|......|...++.|..++..|..++..|+..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455556666666666666666666666666654
No 44
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.79 E-value=16 Score=30.95 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Q 019637 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEENT 161 (338)
Q Consensus 115 kqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~~~ 161 (338)
.+++.+...+-+....|+..-..+..||..|+-||..|+..|.+...
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666677777777888888888888999999999999999876654
No 45
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.29 E-value=30 Score=27.29 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=16.6
Q ss_pred HHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 120 ~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
.+..|+...+.|+..+..+..+++.|+.++..|+.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555543
No 46
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=62.13 E-value=63 Score=28.65 Aligned_cols=79 Identities=29% Similarity=0.375 Sum_probs=46.6
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHh-CCCCceEeehhhhhHHH----------hhHHHHHHHHHHHHhhhHH
Q 019637 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQEL-GLQPRQVAVWFQNRRAR----------WKTKQLERDYGVLKANYDA 130 (338)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~L-gLserQVkVWFQNRRaK----------~Kkkqler~~~~lka~~d~ 130 (338)
.+|+.+++..| ..| +|=+.| |++...|-.|=|.||+- .|+-+.. ..|.+....
T Consensus 22 d~lsDd~Lvsm------------SVR-eLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk---~eLE~~k~~ 85 (135)
T KOG4196|consen 22 DRLSDDELVSM------------SVR-ELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQK---HELEKEKAE 85 (135)
T ss_pred CCcCHHHHHHh------------hHH-HHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 46888887765 222 333343 88888888888888763 2332222 233334445
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 131 LKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 131 l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
|..+.+.|..|+..+..|+.-++.+.
T Consensus 86 L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666654
No 47
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=60.35 E-value=23 Score=34.45 Aligned_cols=42 Identities=33% Similarity=0.407 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
.++.+...|...++.|..+++.|+..|+.|..++.+|...|.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455566667778888888889999888888888888888775
No 48
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.17 E-value=31 Score=29.47 Aligned_cols=44 Identities=36% Similarity=0.464 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
+++.....+-+....|+..-..+..||..|+-||..|+..|.+.
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666667777788888888889999999999999988754
No 49
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=59.57 E-value=2 Score=32.51 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=27.7
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
++++||+++...+-..+.. .......+|+++||++.+|..|-.
T Consensus 3 ~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~gi~~~~l~~W~~ 45 (76)
T PF01527_consen 3 KRRRYSPEFKLQAVREYLE----SGESVSEVAREYGISPSTLYNWRK 45 (76)
T ss_dssp SS----HHHHHHHHHHHHH----HHCHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH----CCCceEeeecccccccccccHHHH
Confidence 4566999887766665522 234577899999999999988854
No 50
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=58.43 E-value=11 Score=28.06 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhhhhcCC--CCHHHHHHHHHHhCCCCceE
Q 019637 64 LSVDQVKALEKNFEVENK--LEPERKVKLAQELGLQPRQV 101 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~y--Ps~~~R~eLA~~LgLserQV 101 (338)
+|..|..+|..+|...-| |-...-.+||.+||++..-|
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~ 40 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTV 40 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHH
Confidence 588999999999987765 44455679999999998654
No 51
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.36 E-value=61 Score=25.57 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 114 TKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 114 kkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
-..++.+...|+..+..+...+..|+.+|++|+.+...-+.+|.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777778888888888877666665553
No 52
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=55.23 E-value=35 Score=33.03 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=24.8
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 109 RaK~Kkkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
|.|.++++.+.+ ++.....|..++..|+.+.+.|++|+..|+..+...
T Consensus 208 kSR~~~k~~~~e---~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 208 KSRDKRKQKEDE---MAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555444322 222333455556666666666666666666655443
No 53
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=52.98 E-value=33 Score=29.50 Aligned_cols=43 Identities=40% Similarity=0.512 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
.++.....+-+....++..-.++-.||..|+-|+..||.+|..
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3555566666667777777888888999999999999999976
No 54
>smart00340 HALZ homeobox associated leucin zipper.
Probab=52.95 E-value=23 Score=25.67 Aligned_cols=32 Identities=41% Similarity=0.556 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
|.+-+++.||. --++|..||.+|++|+.+|++
T Consensus 2 QTEvdCe~LKr-------cce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 2 QTEVDCELLKR-------CCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred chHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555 445666788888888888875
No 55
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=51.05 E-value=8.2 Score=25.81 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRA 110 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRa 110 (338)
++..+..++...|... ....++|..+|++...|..|...-+.
T Consensus 11 l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 11 LPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRALK 52 (55)
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6777888887776422 23567899999999999888764433
No 56
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.92 E-value=62 Score=24.17 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=14.9
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
....|......|..+|..|..++..|+..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554443
No 57
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=48.18 E-value=19 Score=21.29 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeeh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVW 104 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVW 104 (338)
.++..+...+...|... . ....+|..+|++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~-~----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAG-E----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHh
Confidence 36677666666666532 2 4557889999988777665
No 58
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=47.86 E-value=71 Score=33.69 Aligned_cols=90 Identities=16% Similarity=0.264 Sum_probs=43.5
Q ss_pred CcCCHHHHHHHHHh-hhhcC-CCCHHHHHHHHHHhCCCCceEeehhhhhHHHh--------hHHHHHHHHHHHHhhhHHH
Q 019637 62 RRLSVDQVKALEKN-FEVEN-KLEPERKVKLAQELGLQPRQVAVWFQNRRARW--------KTKQLERDYGVLKANYDAL 131 (338)
Q Consensus 62 rRfT~~Ql~~LE~~-F~~~~-yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~--------Kkkqler~~~~lka~~d~l 131 (338)
-+++.+....|.+. |-... +|-...-+++.++. +.=.+|+|.+. .-..++..+....+.+..|
T Consensus 219 L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv-------RRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL 291 (472)
T KOG0709|consen 219 LVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV-------RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQEL 291 (472)
T ss_pred eeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH-------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHH
Confidence 34788888777765 33322 33333223333222 22223433222 2223333344444455556
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 132 KLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 132 ~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
+.....|..+|..|.++++.|...+-.
T Consensus 292 ~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 292 QKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 666666666666666666666655443
No 59
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=47.34 E-value=16 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWF 105 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWF 105 (338)
.+++.+..+|...|.. ...-.++|..+|++...|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~-----~~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFE-----GLTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTS-----T-SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcC-----CCCHHHHHHHHCCcHHHHHHHH
Confidence 3788899999998822 2235689999999998876554
No 60
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=46.78 E-value=55 Score=31.91 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
-+..+...|+..++.|+..+..|..+|..|..++..|++.|
T Consensus 101 dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 101 DLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34555555666666666666666666655555555555544
No 61
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.17 E-value=39 Score=28.26 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=17.7
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 128 YDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 128 ~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
...++.+...++.+|+.|+.++..|+.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334445556667777777777777765
No 62
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=45.15 E-value=11 Score=27.33 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHHHHHHH
Q 019637 86 RKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVL 124 (338)
Q Consensus 86 ~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler~~~~l 124 (338)
....||+.+|++..+|..|+.++.....-..+.+-...|
T Consensus 12 t~~~La~~~gis~~tl~~~~~~~~~~~~~~~l~~ia~~l 50 (63)
T PF13443_consen 12 TQKDLARKTGISRSTLSRILNGKPSNPSLDTLEKIAKAL 50 (63)
T ss_dssp -HHHHHHHHT--HHHHHHHHTTT-----HHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHhcccccccHHHHHHHHHHc
Confidence 466899999999999999998876666665555544444
No 63
>smart00338 BRLZ basic region leucin zipper.
Probab=44.74 E-value=98 Score=23.09 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=20.0
Q ss_pred HHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 123 VLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 123 ~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
.|......|...+..|..+...|..++..|+..+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555566666666666666666666554
No 64
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=44.21 E-value=55 Score=31.21 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhH-HHhhhhhhhHHHHHHHHHHHHHHHHHhhhhcccCCc
Q 019637 118 ERDYGVLKANYD-ALKLNYDSLQHDNEALLKEIRELKSKLNEENTESNI 165 (338)
Q Consensus 118 er~~~~lka~~d-~l~~~~dsl~~ene~L~~E~~~LK~~l~~~~~~s~~ 165 (338)
..+...++.... ..+.+...++.||++|+-+++++|..|..+......
T Consensus 100 ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a 148 (220)
T KOG3156|consen 100 KVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTA 148 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 334444444332 345788899999999999999999999998765544
No 65
>smart00340 HALZ homeobox associated leucin zipper.
Probab=43.88 E-value=39 Score=24.52 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 019637 138 LQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 138 l~~ene~L~~E~~~LK~~l~~ 158 (338)
|++=-+.|.+||++|+..+.+
T Consensus 10 LKrcce~LteeNrRL~ke~~e 30 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQE 30 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666665543
No 66
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.51 E-value=53 Score=31.83 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=11.5
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
....+..++..++...+.|..|+.+|.+
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 67
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=43.42 E-value=56 Score=34.40 Aligned_cols=61 Identities=23% Similarity=0.408 Sum_probs=37.1
Q ss_pred Eeehh---hhhHHHhhHHHHHHHHHHHHhhhHHHh---hhhhhh-----------------------------HHHHHHH
Q 019637 101 VAVWF---QNRRARWKTKQLERDYGVLKANYDALK---LNYDSL-----------------------------QHDNEAL 145 (338)
Q Consensus 101 VkVWF---QNRRaK~Kkkqler~~~~lka~~d~l~---~~~dsl-----------------------------~~ene~L 145 (338)
.-+|| ||+.+|.+-+++-++.+.|+..-..|. ..-..- -.+|+..
T Consensus 228 ~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~ 307 (575)
T KOG4403|consen 228 GGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETS 307 (575)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHH
Confidence 34688 899888887777666666654322222 111111 1256677
Q ss_pred HHHHHHHHHHhhhhcc
Q 019637 146 LKEIRELKSKLNEENT 161 (338)
Q Consensus 146 ~~E~~~LK~~l~~~~~ 161 (338)
++|++.|+.+|.+.+.
T Consensus 308 rkelE~lR~~L~kAEk 323 (575)
T KOG4403|consen 308 RKELEQLRVALEKAEK 323 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888877765
No 68
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=41.80 E-value=81 Score=31.37 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=31.5
Q ss_pred HHhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 110 ARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 110 aK~Kkkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
+|+|.+++.+. +.+--....|-..++.|+.+-..|.+|++.||..+.+.
T Consensus 240 tRYRqKkRae~-E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 240 TRYRQKKRAEK-EALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333 33334456677777888888888888888888877654
No 69
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=41.64 E-value=66 Score=25.56 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCceEeehhhhhHHHhhHHH------HHHHHHHHHh----------hhHHHhhhhhhhHHHHHHHHHHHH
Q 019637 87 KVKLAQELGLQPRQVAVWFQNRRARWKTKQ------LERDYGVLKA----------NYDALKLNYDSLQHDNEALLKEIR 150 (338)
Q Consensus 87 R~eLA~~LgLserQVkVWFQNRRaK~Kkkq------ler~~~~lka----------~~d~l~~~~dsl~~ene~L~~E~~ 150 (338)
..++|+.+|++++.|+.|-+...-.-.+.. ...+...++. ....++. .-.+..+.+.|++++.
T Consensus 4 i~e~A~~~gvs~~tLr~ye~~Gli~p~r~~~g~R~y~~~dv~~l~~i~~L~~d~g~~l~~i~~-~l~l~~~~~~l~~~l~ 82 (91)
T cd04766 4 ISVAAELSGMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERLRRIQRLTQELGVNLAGVKR-ILELEEELAELRAELD 82 (91)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCcCCCcCCCCCeeECHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHH
Confidence 357889999999999999764422211100 0111111111 1111111 1236667888888888
Q ss_pred HHHHHhh
Q 019637 151 ELKSKLN 157 (338)
Q Consensus 151 ~LK~~l~ 157 (338)
+|+.++.
T Consensus 83 ~l~~~~~ 89 (91)
T cd04766 83 ELRARLR 89 (91)
T ss_pred HHHHHhc
Confidence 8888775
No 70
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=40.60 E-value=28 Score=31.99 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHhhhhcCC--CCHHHHHHHHHHhCCCCce
Q 019637 63 RLSVDQVKALEKNFEVENK--LEPERKVKLAQELGLQPRQ 100 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~y--Ps~~~R~eLA~~LgLserQ 100 (338)
.+|..|+.+|..+|...-| |=.....+||+++|+++.-
T Consensus 155 ~LTdrQ~~vL~~A~~~GYFd~PR~~~l~dLA~~lGISkst 194 (215)
T COG3413 155 DLTDRQLEVLRLAYKMGYFDYPRRVSLKDLAKELGISKST 194 (215)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCccCCHHHHHHHhCCCHHH
Confidence 4999999999999997765 4444567899999999855
No 71
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=39.33 E-value=1.3e+02 Score=21.84 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=17.5
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 128 YDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 128 ~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
...+......|..+|..|..++..|+.
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555556667777777777777654
No 72
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=37.56 E-value=66 Score=24.49 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=24.1
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
.|..+..+..++..+++.|++||.+|+.-|..
T Consensus 27 rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 27 RYNKVLLDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566677888999999999999887753
No 73
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.14 E-value=79 Score=26.75 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 115 kqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
..+-.+.+.||.....|..++..|+.||+.|++.+..+..
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777777778888888888888888887777665
No 74
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.63 E-value=95 Score=29.91 Aligned_cols=46 Identities=30% Similarity=0.423 Sum_probs=27.4
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 109 RaK~Kkkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
|-|.|...++++...+++....|+.+.++|+.+|.+|-+.++=|..
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556677776666666666666666666666665555544443
No 75
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=35.17 E-value=1.8e+02 Score=32.70 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=41.4
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 109 RaK~Kkkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
-|+.++..+.++...+++.++.+.+..+.+..+++.|+.++..|+...
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~ 260 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSS 260 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 356677788888999999999999999999999999999999998643
No 76
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.48 E-value=1.1e+02 Score=24.52 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=17.7
Q ss_pred HHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 019637 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (338)
Q Consensus 120 ~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~ 155 (338)
+.+.||..+..|..+....++..+.|..++..||..
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544444444444445555555555555443
No 77
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=34.12 E-value=1.2e+02 Score=23.98 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=30.0
Q ss_pred HHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 119 RDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 119 r~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
++...|+..|..++........++..|.+++..|-.++.
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888888777664
No 78
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.74 E-value=98 Score=32.77 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 113 KTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 113 Kkkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
|...++++++.++...+.+......++...+.|..|+..|+.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666655555666667777778888888888887
No 79
>PF15058 Speriolin_N: Speriolin N terminus
Probab=33.47 E-value=79 Score=29.80 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=21.8
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhhccc
Q 019637 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEENTE 162 (338)
Q Consensus 122 ~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~~~~ 162 (338)
+.++..++.|..++..|+++ -+|.+|+.+||.+|.+.+.+
T Consensus 8 eGlrhqierLv~ENeeLKKl-VrLirEN~eLksaL~ea~~~ 47 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKL-VRLIRENHELKSALGEACAE 47 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 33344444444455555443 34555677777777776654
No 80
>smart00338 BRLZ basic region leucin zipper.
Probab=33.33 E-value=1.3e+02 Score=22.51 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=15.5
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
....|......|..+|..|..++..|+..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555443
No 81
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=33.22 E-value=46 Score=33.83 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=18.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 129 DALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 129 d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
-+|+.++++|++||+.|+.++.+|++.+.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666666666655544
No 82
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=33.22 E-value=1.3e+02 Score=22.52 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=24.8
Q ss_pred HHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 121 ~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
...|++.-+.-..+..........|..||..|+++|.-
T Consensus 10 e~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 10 ERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred HHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666677777777777777777753
No 83
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.61 E-value=1e+02 Score=26.39 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 115 kqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
..+-.+.+.||+....+..++..|+.||+.|++.+.++..
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466677888888888888899999999999998887744
No 84
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=32.04 E-value=44 Score=29.61 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=34.3
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
...+++.|..+|.. +. .. ....++|..||++...|+.|-+..+.+.|
T Consensus 4 ~~~Lt~rqreVL~l-r~-~G----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr 50 (141)
T PRK03975 4 ESFLTERQIEVLRL-RE-RG----LTQQEIADILGTSRANVSSIEKRARENIE 50 (141)
T ss_pred ccCCCHHHHHHHHH-HH-cC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34589999999977 32 22 23568999999999999998875444444
No 85
>PF00424 REV: REV protein (anti-repression trans-activator protein); InterPro: IPR000625 REV is a viral anti-repression trans-activator protein, which appears to act post-transcriptionally [] to relieve negative repression of GAG and ENV production. It is a phosphoprotein [, ] whose state of phosphorylation is mediated by a specific serine kinase activity present in the nucleus []. REV accumulates in the nucleoli [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ETF_B 1ETG_B 1ULL_B 3LPH_B 2X7L_R.
Probab=32.00 E-value=58 Score=27.11 Aligned_cols=33 Identities=30% Similarity=0.662 Sum_probs=19.1
Q ss_pred HHHHHHhhhhcCCCCHH--HHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 69 VKALEKNFEVENKLEPE--RKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 69 l~~LE~~F~~~~yPs~~--~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
+.+..-.|+.++||... .+.. .|||.+|++++.
T Consensus 14 vRiIk~LyqsnPyP~~~GTr~aR----------------RnRRRRWR~rq~ 48 (91)
T PF00424_consen 14 VRIIKILYQSNPYPSPEGTRQAR----------------RNRRRRWRARQR 48 (91)
T ss_dssp HHHHHHHHHTS-S--S-S-HHHH----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCCCCCccccc----------------cchhhhHHHHHH
Confidence 34455568889998744 2222 689999998654
No 86
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=31.59 E-value=14 Score=28.38 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCceEeeh
Q 019637 87 KVKLAQELGLQPRQVAVW 104 (338)
Q Consensus 87 R~eLA~~LgLserQVkVW 104 (338)
-.+||.+||+++.+|+.|
T Consensus 25 lkdIA~~Lgvs~~tIr~W 42 (60)
T PF10668_consen 25 LKDIAEKLGVSESTIRKW 42 (60)
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 457899999999999988
No 87
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=31.08 E-value=1.7e+02 Score=22.85 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=12.8
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 019637 126 ANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (338)
Q Consensus 126 a~~d~l~~~~dsl~~ene~L~~E~~~LK~~ 155 (338)
..+..|+.++..|+.+...+..|...|.++
T Consensus 14 ~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 14 EYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 88
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=30.66 E-value=1.5e+02 Score=21.54 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=13.3
Q ss_pred HHhhhHHHhhhhhhhHHHHHHHHHH
Q 019637 124 LKANYDALKLNYDSLQHDNEALLKE 148 (338)
Q Consensus 124 lka~~d~l~~~~dsl~~ene~L~~E 148 (338)
+......|...+..|..++..|..|
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344445555555566666555543
No 89
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=29.45 E-value=90 Score=33.72 Aligned_cols=30 Identities=37% Similarity=0.441 Sum_probs=17.2
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 130 ALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 130 ~l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
.|...-.++..||+.|++|+..||.+|..-
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444455566666666666666666443
No 90
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.33 E-value=2.4e+02 Score=21.73 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 117 LERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 117 ler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
+..+....+..+-.+...-......|..|..++..|+..+.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555667777777777777664
No 91
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=28.80 E-value=41 Score=23.73 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
+++.+..++.-.|-. .-.-.++|..+|+++..|+.|.+
T Consensus 11 L~~~~r~i~~l~~~~-----g~s~~eIa~~l~~s~~~v~~~l~ 48 (54)
T PF08281_consen 11 LPERQREIFLLRYFQ-----GMSYAEIAEILGISESTVKRRLR 48 (54)
T ss_dssp S-HHHHHHHHHHHTS--------HHHHHHHCTS-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----CcCHHHHHHHHCcCHHHHHHHHH
Confidence 566666666665532 33567899999999999999886
No 92
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=28.74 E-value=2e+02 Score=26.91 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 117 LERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 117 ler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
...+...|......+...+-.+......|..|+.+||.+..+.
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666677777777888888888888888876544
No 93
>PF15058 Speriolin_N: Speriolin N terminus
Probab=28.64 E-value=70 Score=30.14 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=22.3
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 126 a~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
.+|+.+.+....+-.||+.|+++++-+|+.+
T Consensus 5 ~~yeGlrhqierLv~ENeeLKKlVrLirEN~ 35 (200)
T PF15058_consen 5 TNYEGLRHQIERLVRENEELKKLVRLIRENH 35 (200)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4677777777777777777777777777654
No 94
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.86 E-value=1.1e+02 Score=29.04 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=17.3
Q ss_pred hhHHHhhhhhhhHHHHH---HHHHHHHHHHHHhhhh
Q 019637 127 NYDALKLNYDSLQHDNE---ALLKEIRELKSKLNEE 159 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene---~L~~E~~~LK~~l~~~ 159 (338)
.++.|+.+...++.+.. .+++|+.+|++.|.-.
T Consensus 77 en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 77 ENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33334444444433333 6677777777766543
No 95
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.76 E-value=2.5e+02 Score=22.91 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=11.2
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHH
Q 019637 131 LKLNYDSLQHDNEALLKEIRELKSK 155 (338)
Q Consensus 131 l~~~~dsl~~ene~L~~E~~~LK~~ 155 (338)
+......|..+|+.|+.|...-+++
T Consensus 44 ~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 44 AQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555554433333
No 96
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=26.58 E-value=1.6e+02 Score=28.49 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=22.0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
..+.+.+....|..||+.|+.++.+|+..+..
T Consensus 216 ~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 216 KEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666667777888888888777777653
No 97
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=26.55 E-value=81 Score=25.44 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 136 DSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 136 dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
+.++.+|..|+.++..|++.|.+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888887777654
No 98
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.44 E-value=1e+02 Score=25.19 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=22.5
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
+++|+.+++..|... ..|.+.+|++-..|+.+..
T Consensus 36 ~R~Yt~~di~~l~~I------------~~llr~~G~~l~~i~~~l~ 69 (99)
T cd04765 36 RRYYRPKDVELLLLI------------KHLLYEKGYTIEGAKQALK 69 (99)
T ss_pred CeeeCHHHHHHHHHH------------HHHHHHCCCCHHHHHHHHH
Confidence 445999999988543 2345667777766665554
No 99
>PRK14127 cell division protein GpsB; Provisional
Probab=26.08 E-value=1.1e+02 Score=26.21 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=19.3
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 128 YDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 128 ~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
.+.+..+++.+..++..|+.++.+|+.+|.+-
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDEL 63 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666777777777777666543
No 100
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.92 E-value=1.7e+02 Score=32.65 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHhCCCCceEe
Q 019637 82 LEPERKVKLAQELGLQPRQVA 102 (338)
Q Consensus 82 Ps~~~R~eLA~~LgLserQVk 102 (338)
|....-..+|+.+||++..|.
T Consensus 480 ~g~S~a~~iA~~~Glp~~ii~ 500 (771)
T TIGR01069 480 PGESYAFEIAQRYGIPHFIIE 500 (771)
T ss_pred CCCcHHHHHHHHhCcCHHHHH
Confidence 344455678899999887763
No 101
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=24.99 E-value=22 Score=41.60 Aligned_cols=57 Identities=21% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
++|++.-|..+|...|+...+|.-.++..++..||+..|.+-.||++++.++.....
T Consensus 448 s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~ 504 (1406)
T KOG1146|consen 448 SKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHP 504 (1406)
T ss_pred hhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccc
Confidence 335788888999999988999999999999999999999999999998888876543
No 102
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.56 E-value=3.5e+02 Score=23.48 Aligned_cols=35 Identities=9% Similarity=-0.040 Sum_probs=20.6
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhh
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNR 108 (338)
.+.|+..++..|...- ..+.+|++-..|+-++.+.
T Consensus 35 ~R~Y~~~~l~~l~~I~-------------~lr~~G~sL~eI~~~l~~~ 69 (134)
T cd04779 35 YRYYDETALDRLQLIE-------------HLKGQRLSLAEIKDQLEEV 69 (134)
T ss_pred CeeECHHHHHHHHHHH-------------HHHHCCCCHHHHHHHHHhh
Confidence 4459999998885532 2345555555555555443
No 103
>PF09607 BrkDBD: Brinker DNA-binding domain; InterPro: IPR018586 This DNA-binding domain is the first approx. 100 residues of the N-terminal end of Brinker. The structure of this domain in complex with DNA consists of four alpha-helices that contain a helix-turn-helix DNA recognition motif specific for GC-rich DNA. The Brinker nuclear repressor is a major element of the Drosophila Decapentaplegic morphogen signalling pathway []. ; PDB: 2GLO_A.
Probab=24.55 E-value=50 Score=25.32 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=21.9
Q ss_pred cCCHHH-HHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 63 RLSVDQ-VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 63 RfT~~Q-l~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
.|+... +.+++.++.. ..--...|. -|+++|+++++|+-|-+
T Consensus 5 sy~~~FKL~Vv~~a~~~-~nc~~~~RA-aarkf~V~r~~Vr~W~k 47 (58)
T PF09607_consen 5 SYTAEFKLKVVEYAEKD-NNCKGNQRA-AARKFNVSRRQVRKWRK 47 (58)
T ss_dssp ---HHHHHHHHHHHHH--TTTTT-HHH-HHHHTTS-HHHHHHHHT
T ss_pred ccChHHHHHHHHHHHHc-cchhhhHHH-HHHHhCccHHHHHHHHH
Confidence 355543 4555554432 222223343 49999999999998854
No 104
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.38 E-value=2.1e+02 Score=26.86 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=9.7
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 131 LKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 131 l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
|+.++..|+.+.+.++.++..|+.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 105
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=23.70 E-value=1.4e+02 Score=32.24 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=27.6
Q ss_pred HHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 121 ~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
...|++...+|..+++.|+.||..|++++..|-.
T Consensus 304 ~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 304 MLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3457778888888899999999999988887765
No 106
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.66 E-value=2.1e+02 Score=23.28 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=17.7
Q ss_pred HHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 121 ~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
.+.||..+..|..+.+.+....+.|..++..||...
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444444444444444455666666666544
No 107
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.65 E-value=1.4e+02 Score=28.98 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 019637 143 EALLKEIRELKSKLNEEN 160 (338)
Q Consensus 143 e~L~~E~~~LK~~l~~~~ 160 (338)
+.|++||++||+.|.-..
T Consensus 94 ~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 94 QNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 347888888888776543
No 108
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=23.63 E-value=81 Score=27.91 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRA 110 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRa 110 (338)
++..+..+|...|-.+ ..-.++|..||++...|+++...-|.
T Consensus 143 L~~~~r~vl~l~~~~~-----~s~~EIA~~Lgis~~tVk~~l~ra~~ 184 (194)
T PRK09646 143 LTDTQRESVTLAYYGG-----LTYREVAERLAVPLGTVKTRMRDGLI 184 (194)
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHhCCChHhHHHHHHHHHH
Confidence 6777777776654322 23568899999999999887753333
No 109
>PRK00118 putative DNA-binding protein; Validated
Probab=23.58 E-value=2.5e+02 Score=23.65 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK 111 (338)
++..|..++...|.... ...+||..+|+++..|..|...-|.+
T Consensus 18 L~ekqRevl~L~y~eg~-----S~~EIAe~lGIS~~TV~r~L~RArkk 60 (104)
T PRK00118 18 LTEKQRNYMELYYLDDY-----SLGEIAEEFNVSRQAVYDNIKRTEKL 60 (104)
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 56777777766554322 35579999999999998887643333
No 110
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.37 E-value=3.2e+02 Score=22.15 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 019637 114 TKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (338)
Q Consensus 114 kkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~ 155 (338)
...++.....|-...+.++.+++.|..+|+-|..=+..|-..
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777888889999999999999999999998888664
No 111
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=22.60 E-value=79 Score=25.26 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNR 108 (338)
+++.+..++...|-. .....++|..+|+++..|..|...-
T Consensus 111 L~~~~~~ii~~~~~~-----g~s~~eIA~~l~~s~~~v~~~~~~~ 150 (158)
T TIGR02937 111 LPEREREVLVLRYLE-----GLSYKEIAEILGISVGTVKRRLKRA 150 (158)
T ss_pred CCHHHHHHHhhHHhc-----CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666666554432 2235589999999999987776533
No 112
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=22.29 E-value=80 Score=26.78 Aligned_cols=38 Identities=13% Similarity=-0.025 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
+++.+..+|...|-.. ....++|..+|++...|+.|..
T Consensus 129 L~~~~r~vl~l~~~~~-----~s~~eIA~~lgis~~tV~~~l~ 166 (182)
T PRK09652 129 LPEELRTAITLREIEG-----LSYEEIAEIMGCPIGTVRSRIF 166 (182)
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777655322 1345789999999999988776
No 113
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.23 E-value=3.2e+02 Score=25.60 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=17.8
Q ss_pred HHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 019637 123 VLKANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (338)
Q Consensus 123 ~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~ 155 (338)
.|++.+..|+.+...++.+++.|..++..++..
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555543
No 114
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=22.22 E-value=76 Score=26.57 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQN 107 (338)
+++.+..++...|-.+ ....++|..+|++...|+.|...
T Consensus 107 L~~~~r~ii~l~~~~~-----~s~~EIA~~l~is~~tV~~~~~r 145 (154)
T PRK06759 107 LDEKEKYIIFERFFVG-----KTMGEIALETEMTYYQVRWIYRQ 145 (154)
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHHCCCHHHHHHHHHH
Confidence 6777777776655332 23668999999999999887653
No 115
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=22.22 E-value=1.1e+02 Score=28.58 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=32.5
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhhc
Q 019637 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEEN 160 (338)
Q Consensus 122 ~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~~ 160 (338)
..+...++.|+..++.+..++..|+.++.+|+..+....
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~ 146 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLK 146 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 334447889999999999999999999999999886543
No 116
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.65 E-value=1.9e+02 Score=21.65 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=9.2
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 019637 134 NYDSLQHDNEALLKEIREL 152 (338)
Q Consensus 134 ~~dsl~~ene~L~~E~~~L 152 (338)
....++.+++.|..++..|
T Consensus 32 ~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 32 EIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555554
No 117
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.49 E-value=2.2e+02 Score=31.78 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHhCCCCceEe
Q 019637 82 LEPERKVKLAQELGLQPRQVA 102 (338)
Q Consensus 82 Ps~~~R~eLA~~LgLserQVk 102 (338)
|....-..+|+.+||++..|.
T Consensus 485 ~g~S~a~~iA~~~Glp~~ii~ 505 (782)
T PRK00409 485 PGKSNAFEIAKRLGLPENIIE 505 (782)
T ss_pred CCCcHHHHHHHHhCcCHHHHH
Confidence 334455678899999887763
No 118
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=21.35 E-value=2.8e+02 Score=22.35 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhh
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNR 108 (338)
.+.|+..++..|..... .+.+|++..+|+-++...
T Consensus 36 ~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~ 70 (103)
T cd01106 36 YRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDP 70 (103)
T ss_pred ceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcC
Confidence 34599999998865432 345677766666666543
No 119
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=21.33 E-value=1e+02 Score=26.13 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
+++.+..++...|-... .-.++|..+|+++..|++....-|.+-|
T Consensus 107 Lp~~~r~v~~l~~~~g~-----s~~EIA~~lgis~~tV~~~l~Rar~~Lr 151 (160)
T PRK09642 107 LPENYRDVVLAHYLEEK-----SYQEIALQEKIEVKTVEMKLYRARKWIK 151 (160)
T ss_pred CCHHHHHHHHHHHHhCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 56666666655443222 2458899999999999887764444433
No 120
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.26 E-value=1.6e+02 Score=26.44 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=23.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhcccCCcCc
Q 019637 133 LNYDSLQHDNEALLKEIRELKSKLNEENTESNISV 167 (338)
Q Consensus 133 ~~~dsl~~ene~L~~E~~~LK~~l~~~~~~s~~s~ 167 (338)
.....++.+++.|+.++..|+.+|.++...-..++
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~ 107 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEV 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888877765443333
No 121
>PRK12543 RNA polymerase sigma factor; Provisional
Probab=21.17 E-value=1.4e+02 Score=25.90 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
+++.+..++.-.|-.. ....++|..+|++...|++....-|.+.|
T Consensus 118 Lp~~~r~i~~l~~~e~-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr 162 (179)
T PRK12543 118 LPYKLRQVIILRYLHD-----YSQEEIAQLLQIPIGTVKSRIHAALKKLR 162 (179)
T ss_pred CCHHHHHHHHHHHHcc-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5555555555433222 23458899999999888776554444333
No 122
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.09 E-value=2.9e+02 Score=22.85 Aligned_cols=43 Identities=37% Similarity=0.529 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 117 LERDYGVLKANYDA-LKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 117 ler~~~~lka~~d~-l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
.+.....|+.+|+. .....+.|+.++..|..|+..|+.+|.-.
T Consensus 32 HE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 32 HETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566655543 34445666777777777777777776544
No 123
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=21.06 E-value=38 Score=23.71 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=18.9
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehh
Q 019637 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWF 105 (338)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWF 105 (338)
+.||.+|...++..+... ....+||+.+|.+...|..|.
T Consensus 3 ~~Lt~~eR~~I~~l~~~G-----~s~~~IA~~lg~s~sTV~rel 41 (44)
T PF13936_consen 3 KHLTPEERNQIEALLEQG-----MSIREIAKRLGRSRSTVSREL 41 (44)
T ss_dssp ---------HHHHHHCS--------HHHHHHHTT--HHHHHHHH
T ss_pred cchhhhHHHHHHHHHHcC-----CCHHHHHHHHCcCcHHHHHHH
Confidence 458888999888876533 345679999999887776554
No 124
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.02 E-value=1.4e+02 Score=26.80 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=16.8
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 129 DALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 129 d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
++|............+|.+|+..|+.+|.+.
T Consensus 78 nALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 78 NALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333333444566777777777666543
No 125
>PRK12526 RNA polymerase sigma factor; Provisional
Probab=20.96 E-value=89 Score=28.12 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK 111 (338)
++..+..+|...|-. .....++|..+|+++..|+++...-|.+
T Consensus 154 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~tV~~~l~Ra~~~ 196 (206)
T PRK12526 154 LPEAQQTVVKGVYFQ-----ELSQEQLAQQLNVPLGTVKSRLRLALAK 196 (206)
T ss_pred CCHHHHHHHHHHHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 556666666544322 2235688999999999998776533333
No 126
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.39 E-value=1.7e+02 Score=25.22 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHH
Q 019637 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRE 151 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~ 151 (338)
.+-++...+|++...+..++-.|+.||+.|++.+..
T Consensus 19 ~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 19 VLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 455677788888888888888888899888887766
No 127
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=20.04 E-value=54 Score=22.88 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeeh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVW 104 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVW 104 (338)
.++.+|+..+...+... + ...+||+.+|++...|..+
T Consensus 5 ~~~~~~~~~i~~l~~~G-~----si~~IA~~~gvsr~TvyR~ 41 (45)
T PF02796_consen 5 KLSKEQIEEIKELYAEG-M----SIAEIAKQFGVSRSTVYRY 41 (45)
T ss_dssp SSSHCCHHHHHHHHHTT-------HHHHHHHTTS-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHH
Confidence 37776777777767655 2 3678999999998776544
Done!