Query 019637
Match_columns 338
No_of_seqs 278 out of 1643
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.7 6.5E-18 2.2E-22 131.0 4.8 61 56-116 16-76 (80)
2 2vi6_A Homeobox protein nanog; 99.7 5.1E-18 1.7E-22 126.2 3.6 60 57-116 3-62 (62)
3 2h1k_A IPF-1, pancreatic and d 99.7 8E-18 2.8E-22 125.6 4.7 59 57-115 3-61 (63)
4 2dmt_A Homeobox protein BARH-l 99.7 1.5E-17 5E-22 129.8 6.1 60 56-115 16-75 (80)
5 2cue_A Paired box protein PAX6 99.7 1.8E-17 6.1E-22 129.3 6.6 64 55-118 5-68 (80)
6 2dmu_A Homeobox protein goosec 99.7 1.6E-17 5.3E-22 126.3 5.7 62 55-116 5-66 (70)
7 1nk2_P Homeobox protein VND; h 99.7 1.5E-17 5.1E-22 128.9 5.6 63 57-119 9-71 (77)
8 2cra_A Homeobox protein HOX-B1 99.7 1.2E-17 3.9E-22 127.2 4.7 62 55-116 5-66 (70)
9 1puf_A HOX-1.7, homeobox prote 99.7 3.1E-17 1.1E-21 127.1 7.1 63 55-117 11-73 (77)
10 2e1o_A Homeobox protein PRH; D 99.7 1.9E-17 6.5E-22 126.0 5.7 62 55-116 5-66 (70)
11 2dmq_A LIM/homeobox protein LH 99.7 2E-17 6.7E-22 128.6 5.7 64 55-118 5-68 (80)
12 2kt0_A Nanog, homeobox protein 99.7 1.8E-17 6.3E-22 129.9 5.6 61 56-116 21-81 (84)
13 2da2_A Alpha-fetoprotein enhan 99.7 1.7E-17 5.7E-22 126.0 4.5 62 55-116 5-66 (70)
14 3a01_A Homeodomain-containing 99.7 2.7E-17 9.2E-22 132.2 5.9 70 56-125 16-85 (93)
15 2dms_A Homeobox protein OTX2; 99.7 2.5E-17 8.7E-22 128.3 5.3 63 55-117 5-67 (80)
16 1ig7_A Homeotic protein MSX-1; 99.7 2.7E-17 9.2E-22 120.4 4.9 57 58-114 1-57 (58)
17 2ecc_A Homeobox and leucine zi 99.7 1.9E-17 6.6E-22 129.8 4.4 59 59-117 5-63 (76)
18 2hdd_A Protein (engrailed home 99.7 2.2E-17 7.5E-22 122.3 4.3 57 58-114 4-60 (61)
19 2djn_A Homeobox protein DLX-5; 99.7 2.1E-17 7.1E-22 125.8 4.0 61 55-115 5-65 (70)
20 2da1_A Alpha-fetoprotein enhan 99.7 2.1E-17 7.1E-22 125.5 4.0 62 55-116 5-66 (70)
21 1wh5_A ZF-HD homeobox family p 99.7 2.6E-17 8.9E-22 129.3 4.4 59 56-114 16-78 (80)
22 3nar_A ZHX1, zinc fingers and 99.7 4.2E-17 1.4E-21 131.6 5.2 64 56-119 24-87 (96)
23 1zq3_P PRD-4, homeotic bicoid 99.7 5E-17 1.7E-21 123.1 5.2 60 58-117 3-62 (68)
24 1bw5_A ISL-1HD, insulin gene e 99.7 2.7E-17 9.2E-22 123.7 3.3 60 57-116 3-62 (66)
25 2da5_A Zinc fingers and homeob 99.7 4.6E-17 1.6E-21 125.8 4.7 59 58-116 8-66 (75)
26 1yz8_P Pituitary homeobox 2; D 99.7 1.8E-17 6.3E-22 125.4 2.4 61 56-116 2-62 (68)
27 1fjl_A Paired protein; DNA-bin 99.7 6.7E-17 2.3E-21 126.2 5.6 61 56-116 17-77 (81)
28 1b8i_A Ultrabithorax, protein 99.7 4.7E-17 1.6E-21 127.5 4.7 62 55-116 18-79 (81)
29 2l7z_A Homeobox protein HOX-A1 99.7 6.6E-17 2.3E-21 124.2 5.4 60 56-115 6-65 (73)
30 1jgg_A Segmentation protein EV 99.7 5.2E-17 1.8E-21 120.0 4.6 58 58-115 2-59 (60)
31 1uhs_A HOP, homeodomain only p 99.7 6.4E-17 2.2E-21 123.7 5.2 59 58-116 2-61 (72)
32 1ahd_P Antennapedia protein mu 99.7 4.3E-17 1.5E-21 123.7 4.1 59 58-116 3-61 (68)
33 2da4_A Hypothetical protein DK 99.7 2.7E-17 9.1E-22 128.2 3.0 61 56-116 7-71 (80)
34 3rkq_A Homeobox protein NKX-2. 99.7 6.2E-17 2.1E-21 117.8 4.5 56 58-113 3-58 (58)
35 2m0c_A Homeobox protein arista 99.6 7.8E-17 2.7E-21 123.3 5.1 62 55-116 7-68 (75)
36 2hi3_A Homeodomain-only protei 99.6 9.4E-17 3.2E-21 123.2 5.4 59 58-116 3-62 (73)
37 3a02_A Homeobox protein arista 99.6 5.1E-17 1.8E-21 120.0 3.8 57 60-116 2-58 (60)
38 1ftt_A TTF-1 HD, thyroid trans 99.6 7.5E-17 2.6E-21 122.2 4.8 59 58-116 3-61 (68)
39 2r5y_A Homeotic protein sex co 99.6 5.8E-17 2E-21 128.5 4.3 61 55-115 26-86 (88)
40 2k40_A Homeobox expressed in E 99.6 3.9E-17 1.3E-21 123.1 2.9 61 58-118 2-62 (67)
41 3a03_A T-cell leukemia homeobo 99.6 7.9E-17 2.7E-21 117.8 4.3 54 62-115 2-55 (56)
42 1wh7_A ZF-HD homeobox family p 99.6 5.6E-17 1.9E-21 127.7 3.6 58 56-114 16-78 (80)
43 2dn0_A Zinc fingers and homeob 99.6 8.7E-17 3E-21 124.3 3.9 59 58-116 9-67 (76)
44 1akh_A Protein (mating-type pr 99.6 8E-17 2.7E-21 119.0 3.5 57 57-113 5-61 (61)
45 1b72_A Protein (homeobox prote 99.6 1E-16 3.5E-21 129.4 4.4 62 55-116 32-93 (97)
46 1x2n_A Homeobox protein pknox1 99.6 2E-16 6.9E-21 121.0 5.3 62 56-117 6-70 (73)
47 2ly9_A Zinc fingers and homeob 99.6 1.8E-16 6.2E-21 121.5 4.5 59 58-116 7-65 (74)
48 2ecb_A Zinc fingers and homeob 99.6 1.8E-16 6.3E-21 127.5 4.6 57 60-116 14-70 (89)
49 1k61_A Mating-type protein alp 99.6 2.1E-16 7.3E-21 116.5 4.4 56 60-115 1-59 (60)
50 1puf_B PRE-B-cell leukemia tra 99.6 2.2E-16 7.7E-21 120.8 4.3 61 58-118 2-65 (73)
51 2cqx_A LAG1 longevity assuranc 99.6 1.2E-16 4E-21 123.3 2.1 58 58-115 9-67 (72)
52 1du6_A PBX1, homeobox protein 99.6 1.7E-16 5.8E-21 118.4 2.5 58 57-114 3-63 (64)
53 1b72_B Protein (PBX1); homeodo 99.6 5E-16 1.7E-20 122.4 5.2 61 58-118 2-65 (87)
54 1le8_B Mating-type protein alp 99.6 3.2E-16 1.1E-20 123.3 3.7 61 58-118 3-66 (83)
55 2dmp_A Zinc fingers and homeob 99.6 6.9E-16 2.4E-20 123.2 5.7 58 59-116 15-72 (89)
56 2dmn_A Homeobox protein TGIF2L 99.6 6.2E-16 2.1E-20 121.9 5.3 64 55-118 5-71 (83)
57 2cuf_A FLJ21616 protein; homeo 99.6 7.3E-16 2.5E-20 123.9 5.4 62 56-117 6-82 (95)
58 2l9r_A Homeobox protein NKX-3. 99.6 1.8E-16 6.2E-21 121.8 0.9 55 64-118 11-65 (69)
59 1mnm_C Protein (MAT alpha-2 tr 99.6 8.8E-16 3E-20 121.5 4.7 58 57-114 27-87 (87)
60 3nau_A Zinc fingers and homeob 99.6 1.6E-15 5.6E-20 116.0 4.2 53 64-116 11-63 (66)
61 1x2m_A LAG1 longevity assuranc 99.6 6.8E-16 2.3E-20 117.3 1.7 50 66-115 9-59 (64)
62 1e3o_C Octamer-binding transcr 99.6 1.4E-15 4.7E-20 133.2 3.9 60 56-115 100-159 (160)
63 2e19_A Transcription factor 8; 99.5 1.9E-15 6.5E-20 114.1 3.8 52 63-114 9-60 (64)
64 1au7_A Protein PIT-1, GHF-1; c 99.5 1.6E-15 5.4E-20 131.2 3.6 59 57-115 87-145 (146)
65 3d1n_I POU domain, class 6, tr 99.5 3.9E-15 1.3E-19 128.9 5.0 59 56-114 92-150 (151)
66 2xsd_C POU domain, class 3, tr 99.5 2E-15 6.8E-20 133.0 3.1 61 56-116 98-158 (164)
67 2da6_A Hepatocyte nuclear fact 99.5 1.4E-14 4.7E-19 119.4 6.1 62 56-117 5-87 (102)
68 3l1p_A POU domain, class 5, tr 99.5 6.7E-15 2.3E-19 128.3 3.9 60 56-115 95-154 (155)
69 1wi3_A DNA-binding protein SAT 99.5 1.1E-14 3.9E-19 112.2 4.3 58 56-113 6-64 (71)
70 3k2a_A Homeobox protein MEIS2; 99.5 8.5E-15 2.9E-19 111.1 3.2 58 63-120 4-64 (67)
71 2d5v_A Hepatocyte nuclear fact 99.5 1E-14 3.5E-19 127.4 3.5 61 56-116 96-156 (164)
72 1lfb_A Liver transcription fac 99.5 1E-14 3.6E-19 119.2 2.3 60 58-117 10-90 (99)
73 2lk2_A Homeobox protein TGIF1; 99.3 2.3E-12 7.9E-17 103.8 4.5 56 64-119 12-70 (89)
74 1ic8_A Hepatocyte nuclear fact 99.2 8.7E-13 3E-17 119.5 1.1 57 58-114 116-193 (194)
75 2da7_A Zinc finger homeobox pr 99.2 3.4E-12 1.2E-16 98.7 3.4 46 66-111 14-59 (71)
76 1mh3_A Maltose binding-A1 home 99.2 6.1E-12 2.1E-16 120.1 2.4 53 61-113 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.1 3.6E-11 1.2E-15 110.9 3.3 50 63-112 148-218 (221)
78 2nzz_A Penetratin conjugated G 98.7 1.1E-09 3.9E-14 74.8 -1.5 27 99-125 1-27 (37)
79 2ys9_A Homeobox and leucine zi 91.3 0.067 2.3E-06 41.1 1.4 41 67-107 16-56 (70)
80 1hjb_A Ccaat/enhancer binding 77.0 6 0.00021 31.3 6.3 46 109-157 29-74 (87)
81 1gu4_A CAAT/enhancer binding p 75.7 5.5 0.00019 30.9 5.7 46 108-156 28-73 (78)
82 2jn6_A Protein CGL2762, transp 74.9 2 6.8E-05 32.9 3.0 41 62-106 4-45 (97)
83 2yy0_A C-MYC-binding protein; 74.0 4.2 0.00014 29.2 4.3 32 126-157 19-50 (53)
84 1gd2_E Transcription factor PA 73.2 8.3 0.00028 29.3 6.0 31 127-157 37-67 (70)
85 2dgc_A Protein (GCN4); basic d 71.5 6.4 0.00022 29.1 4.9 32 127-158 31-62 (63)
86 1ci6_A Transcription factor AT 69.5 14 0.00048 27.1 6.4 36 122-157 26-61 (63)
87 2glo_A Brinker CG9653-PA; prot 66.5 2.7 9.1E-05 29.6 1.9 45 61-106 3-47 (59)
88 1t2k_D Cyclic-AMP-dependent tr 66.3 22 0.00076 25.6 6.9 35 122-156 25-59 (61)
89 1gd2_E Transcription factor PA 65.3 9.4 0.00032 29.0 4.8 39 115-153 32-70 (70)
90 1hlv_A CENP-B, major centromer 64.7 6 0.0002 31.4 3.9 49 60-111 4-52 (131)
91 1jnm_A Proto-oncogene C-JUN; B 62.0 9.1 0.00031 27.8 4.1 30 126-155 29-58 (62)
92 2wt7_B Transcription factor MA 58.9 18 0.0006 28.9 5.5 63 95-157 17-86 (90)
93 2wt7_A Proto-oncogene protein 54.4 47 0.0016 24.1 6.9 35 122-156 26-60 (63)
94 1tc3_C Protein (TC3 transposas 54.2 6.4 0.00022 25.0 1.9 39 63-106 5-43 (51)
95 2elh_A CG11849-PA, LD40883P; s 50.5 16 0.00055 27.5 3.9 42 60-106 19-60 (87)
96 1dh3_A Transcription factor CR 48.3 54 0.0018 23.4 6.2 31 127-157 23-53 (55)
97 1jko_C HIN recombinase, DNA-in 47.5 3.5 0.00012 26.9 -0.2 40 63-107 5-44 (52)
98 1hjb_A Ccaat/enhancer binding 45.4 68 0.0023 25.2 6.9 34 124-157 34-67 (87)
99 2yy0_A C-MYC-binding protein; 45.0 21 0.00071 25.6 3.5 27 133-159 19-45 (53)
100 2adl_A CCDA; ribbon-helix-heli 43.8 8 0.00028 29.3 1.2 14 307-320 59-72 (72)
101 3vmx_A Voltage-gated hydrogen 41.7 65 0.0022 22.8 5.6 40 119-158 4-43 (48)
102 2jee_A YIIU; FTSZ, septum, coi 41.0 78 0.0027 24.7 6.5 21 136-156 51-71 (81)
103 3hug_A RNA polymerase sigma fa 40.5 20 0.00068 26.9 3.1 44 64-112 38-81 (92)
104 3he5_A Synzip1; heterodimeric 39.5 81 0.0028 21.8 5.6 41 116-156 7-47 (49)
105 2lv7_A Calcium-binding protein 39.0 65 0.0022 24.6 5.9 45 61-105 27-78 (100)
106 2jee_A YIIU; FTSZ, septum, coi 38.6 78 0.0027 24.7 6.2 38 120-157 28-65 (81)
107 1gu4_A CAAT/enhancer binding p 38.4 1.1E+02 0.0036 23.5 6.9 35 123-157 33-67 (78)
108 1ci6_A Transcription factor AT 38.0 80 0.0027 22.9 5.9 31 126-156 23-53 (63)
109 1s7o_A Hypothetical UPF0122 pr 37.9 77 0.0026 25.2 6.4 46 63-113 22-67 (113)
110 1jnm_A Proto-oncogene C-JUN; B 37.5 89 0.003 22.4 6.0 31 127-157 23-53 (62)
111 3m9b_A Proteasome-associated A 36.5 42 0.0015 31.3 5.1 39 116-154 58-96 (251)
112 3m91_A Proteasome-associated A 35.1 89 0.0031 22.2 5.5 29 128-156 18-46 (51)
113 1t2k_D Cyclic-AMP-dependent tr 34.2 92 0.0031 22.2 5.7 32 126-157 22-53 (61)
114 2wuj_A Septum site-determining 33.4 26 0.00089 25.1 2.5 30 127-156 28-57 (57)
115 3hnw_A Uncharacterized protein 32.8 1.1E+02 0.0038 25.6 6.8 36 120-155 90-125 (138)
116 1xsv_A Hypothetical UPF0122 pr 32.7 88 0.003 24.7 5.9 45 64-113 26-70 (113)
117 3hnw_A Uncharacterized protein 32.6 1.2E+02 0.0042 25.3 7.0 43 115-157 78-120 (138)
118 2wt7_A Proto-oncogene protein 31.7 1.4E+02 0.0049 21.4 7.0 33 125-157 22-54 (63)
119 3gp4_A Transcriptional regulat 31.3 1.7E+02 0.006 24.0 7.7 34 61-107 38-71 (142)
120 2v66_B Nuclear distribution pr 30.7 1.5E+02 0.0053 24.2 7.0 43 116-158 14-60 (111)
121 3a2a_A Voltage-gated hydrogen 30.5 90 0.0031 22.8 4.9 43 117-159 9-51 (58)
122 1go4_E MAD1 (mitotic arrest de 30.4 59 0.002 26.3 4.4 32 127-158 13-44 (100)
123 3gpv_A Transcriptional regulat 29.8 87 0.003 26.0 5.6 35 61-108 52-86 (148)
124 1iuf_A Centromere ABP1 protein 29.8 45 0.0016 27.4 3.8 48 58-108 6-60 (144)
125 2o8x_A Probable RNA polymerase 29.2 26 0.0009 24.2 2.0 41 64-109 16-56 (70)
126 3i5g_B Myosin regulatory light 28.6 89 0.003 25.2 5.4 40 60-99 6-50 (153)
127 2rn7_A IS629 ORFA; helix, all 27.7 40 0.0014 25.8 2.9 46 61-106 4-52 (108)
128 3iv1_A Tumor susceptibility ge 27.3 2.1E+02 0.0071 22.1 6.8 39 108-146 14-52 (78)
129 3mzy_A RNA polymerase sigma-H 27.1 42 0.0014 26.4 3.1 40 64-109 110-149 (164)
130 1p4w_A RCSB; solution structur 26.8 45 0.0015 26.0 3.1 40 62-107 33-72 (99)
131 3s4r_A Vimentin; alpha-helix, 26.3 83 0.0028 24.7 4.6 39 118-156 55-93 (93)
132 1wt6_A Myotonin-protein kinase 25.9 1.7E+02 0.0058 22.8 6.1 39 120-158 32-70 (81)
133 3ra3_A P1C; coiled coil domain 25.9 68 0.0023 19.9 3.0 19 138-156 5-23 (28)
134 3c57_A Two component transcrip 25.5 33 0.0011 26.1 2.0 45 63-113 27-71 (95)
135 2v71_A Nuclear distribution pr 25.2 1.8E+02 0.0062 25.8 7.0 50 108-157 59-112 (189)
136 2x7l_M HIV REV; nuclear export 24.7 45 0.0015 27.7 2.8 34 70-117 16-49 (115)
137 3lph_A Protein REV; helix-loop 24.5 61 0.0021 24.8 3.3 33 69-117 18-52 (72)
138 1deb_A APC protein, adenomatou 23.7 74 0.0025 22.9 3.4 23 136-158 6-28 (54)
139 1a93_B MAX protein, coiled coi 22.8 54 0.0018 21.7 2.3 18 134-151 15-32 (34)
140 3m91_A Proteasome-associated A 22.8 2E+02 0.0069 20.4 5.6 37 116-152 13-49 (51)
141 2oxj_A Hybrid alpha/beta pepti 22.8 1.1E+02 0.0037 20.2 3.7 23 135-157 10-32 (34)
142 3lay_A Zinc resistance-associa 22.6 3.1E+02 0.011 23.8 8.0 14 64-77 68-81 (175)
143 1ku3_A Sigma factor SIGA; heli 21.7 50 0.0017 23.5 2.3 43 64-107 11-53 (73)
144 2oto_A M protein; helical coil 21.3 2.6E+02 0.0089 23.3 7.1 19 106-124 23-41 (155)
145 1deb_A APC protein, adenomatou 21.1 1.1E+02 0.0039 21.9 3.9 33 127-159 4-36 (54)
146 1fse_A GERE; helix-turn-helix 21.0 44 0.0015 23.3 1.8 42 63-110 11-52 (74)
147 2p7v_B Sigma-70, RNA polymeras 20.9 40 0.0014 23.7 1.6 43 64-107 6-48 (68)
148 2rnj_A Response regulator prot 20.8 48 0.0016 24.7 2.1 45 63-113 29-73 (91)
149 3m48_A General control protein 20.7 1.1E+02 0.0039 20.0 3.5 23 135-157 9-31 (33)
150 1je8_A Nitrate/nitrite respons 20.6 77 0.0026 23.3 3.2 44 63-112 21-64 (82)
151 1u78_A TC3 transposase, transp 20.1 54 0.0018 25.6 2.3 41 62-107 5-45 (141)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-18 Score=130.97 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=56.0
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
..+++|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+.+
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3455566699999999999999999999999999999999999999999999999999864
No 2
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.70 E-value=5.1e-18 Score=126.19 Aligned_cols=60 Identities=30% Similarity=0.422 Sum_probs=53.0
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
.+++|++||..|+.+||..|..++||+...+.+||..+||+++||++||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 455667799999999999999999999999999999999999999999999999999853
No 3
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.70 E-value=8e-18 Score=125.62 Aligned_cols=59 Identities=34% Similarity=0.630 Sum_probs=54.7
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
.+++|++||..|+.+||..|..++||+...+.+||..|||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 45667779999999999999999999999999999999999999999999999999985
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=129.84 Aligned_cols=60 Identities=35% Similarity=0.615 Sum_probs=55.1
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
..+++|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 344455569999999999999999999999999999999999999999999999999985
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.8e-17 Score=129.31 Aligned_cols=64 Identities=28% Similarity=0.557 Sum_probs=58.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
+..+++|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3456667779999999999999999999999999999999999999999999999999986543
No 6
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=126.30 Aligned_cols=62 Identities=27% Similarity=0.538 Sum_probs=57.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+..+++|++|+..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34566677799999999999999999999999999999999999999999999999999853
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.69 E-value=1.5e-17 Score=128.89 Aligned_cols=63 Identities=30% Similarity=0.473 Sum_probs=57.0
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler 119 (338)
.+++|++||..|+.+||..|..++||+...+.+||..|||+++||+|||||||+|+|+.+.+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 344555699999999999999999999999999999999999999999999999999876543
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.2e-17 Score=127.19 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=56.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+..+++|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34556667799999999999999999999999999999999999999999999999999853
No 9
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=3.1e-17 Score=127.12 Aligned_cols=63 Identities=33% Similarity=0.485 Sum_probs=57.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
...+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 345566677999999999999999999999999999999999999999999999999998643
No 10
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.9e-17 Score=125.97 Aligned_cols=62 Identities=42% Similarity=0.676 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+..+++|++|+..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34556677799999999999999999999999999999999999999999999999999853
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=128.61 Aligned_cols=64 Identities=25% Similarity=0.498 Sum_probs=58.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
+..+++|++|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 3456667779999999999999999999999999999999999999999999999999987543
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=129.87 Aligned_cols=61 Identities=28% Similarity=0.405 Sum_probs=56.0
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
..+++|++|+..|+.+||..|..++||+...|..||..|||+++||+|||||||+|+|+.+
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3455566699999999999999999999999999999999999999999999999999854
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=125.98 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+..+++|++|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34556677799999999999999999999999999999999999999999999999999853
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=2.7e-17 Score=132.23 Aligned_cols=70 Identities=29% Similarity=0.491 Sum_probs=58.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHHHHHHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLK 125 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler~~~~lk 125 (338)
..+++|++||..|+.+||..|..++||+...|.+||..|||+++||+|||||||+|+|+...+.....+.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~ 85 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQ 85 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHH
Confidence 3455566699999999999999999999999999999999999999999999999999976655444433
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.5e-17 Score=128.30 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=57.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
...+++|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 345566667999999999999999999999999999999999999999999999999998643
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.7e-17 Score=120.42 Aligned_cols=57 Identities=32% Similarity=0.553 Sum_probs=54.0
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
+++|++||..|+.+||..|..++||+...+.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356677999999999999999999999999999999999999999999999999986
No 17
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=1.9e-17 Score=129.81 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=55.1
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 59 kKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
.++++||.+|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999998754
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.67 E-value=2.2e-17 Score=122.34 Aligned_cols=57 Identities=32% Similarity=0.634 Sum_probs=52.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 556667999999999999999999999999999999999999999999999999986
No 19
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-17 Score=125.78 Aligned_cols=61 Identities=31% Similarity=0.494 Sum_probs=56.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3455667779999999999999999999999999999999999999999999999999985
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-17 Score=125.46 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=56.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
...+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34556667799999999999999999999999999999999999999999999999999853
No 21
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=2.6e-17 Score=129.30 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=54.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEV----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~----~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
..+++|+.||.+|+.+||..|.. ++||+...|.+||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 44555566999999999999999 999999999999999999999999999999999885
No 22
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.66 E-value=4.2e-17 Score=131.57 Aligned_cols=64 Identities=28% Similarity=0.441 Sum_probs=56.9
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler 119 (338)
..+++|++|+..|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+|+.++..
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 3455667799999999999999999999999999999999999999999999999999976543
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.66 E-value=5e-17 Score=123.13 Aligned_cols=60 Identities=30% Similarity=0.499 Sum_probs=56.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
+++|++||..|+.+||..|..++||+...+..||..|||+++||+|||||||+|+|+...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 556677999999999999999999999999999999999999999999999999998643
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.66 E-value=2.7e-17 Score=123.68 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=55.7
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
.+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 355666799999999999999999999999999999999999999999999999999864
No 25
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.6e-17 Score=125.83 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
.++++++|..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 34667799999999999999999999999999999999999999999999999999864
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.66 E-value=1.8e-17 Score=125.41 Aligned_cols=61 Identities=25% Similarity=0.532 Sum_probs=56.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
..+++|++|+..|+.+||..|..++||+...+..||..|||+++||++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3456677799999999999999999999999999999999999999999999999999864
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.66 E-value=6.7e-17 Score=126.17 Aligned_cols=61 Identities=31% Similarity=0.513 Sum_probs=55.9
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
..+++|++|+..|+.+||..|..++||+...|..||..|||+++||++||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3445566699999999999999999999999999999999999999999999999999864
No 28
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.66 E-value=4.7e-17 Score=127.51 Aligned_cols=62 Identities=32% Similarity=0.569 Sum_probs=53.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+..+++|++|+..|+.+||..|..++||+...|.+||..|||+++||+|||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34556677799999999999999999999999999999999999999999999999999853
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.66 E-value=6.6e-17 Score=124.21 Aligned_cols=60 Identities=27% Similarity=0.498 Sum_probs=55.8
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
..+++|++|+..|+.+||..|..++||+...+.+||..+||+++||++||||||+|+|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 345566679999999999999999999999999999999999999999999999999985
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.66 E-value=5.2e-17 Score=119.96 Aligned_cols=58 Identities=36% Similarity=0.562 Sum_probs=54.3
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
+++|++||..|+.+||..|..++||+...+.+||..+||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4567779999999999999999999999999999999999999999999999999974
No 31
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=6.4e-17 Score=123.70 Aligned_cols=59 Identities=34% Similarity=0.590 Sum_probs=55.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
.++|++|+..|+.+||..|.. ++||+...|.+||..|||+++||++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356777999999999999996 99999999999999999999999999999999999864
No 32
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.65 E-value=4.3e-17 Score=123.68 Aligned_cols=59 Identities=34% Similarity=0.679 Sum_probs=55.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+++|++||..|+.+||..|..++||+...+.+||..+||+++||+|||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 45667799999999999999999999999999999999999999999999999999864
No 33
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-17 Score=128.18 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=55.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVE----NKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~----~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
..+++|+.||..|+.+||.+|..+ +||+..+|.+||.+|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 345556669999999999999999 9999999999999999999999999999999999853
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.65 E-value=6.2e-17 Score=117.79 Aligned_cols=56 Identities=36% Similarity=0.514 Sum_probs=52.9
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
++.+++|+..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 45667799999999999999999999999999999999999999999999999986
No 35
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=7.8e-17 Score=123.27 Aligned_cols=62 Identities=31% Similarity=0.568 Sum_probs=56.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+..++.|++|+..|+.+||..|..++||+...+.+||..|||+++||++||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34455566799999999999999999999999999999999999999999999999999854
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=9.4e-17 Score=123.20 Aligned_cols=59 Identities=31% Similarity=0.541 Sum_probs=55.0
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+++|++||..|+.+||..|.. ++||+...|.+||..+||+++||++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456777999999999999995 99999999999999999999999999999999999864
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.65 E-value=5.1e-17 Score=119.98 Aligned_cols=57 Identities=32% Similarity=0.602 Sum_probs=50.5
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
.|++||..|+.+||..|..++||+...+.+||..+||+++||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 466799999999999999999999999999999999999999999999999999853
No 38
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.65 E-value=7.5e-17 Score=122.18 Aligned_cols=59 Identities=32% Similarity=0.538 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+++|++||..|+.+||..|..++||+...+.+||..|||++++|++||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 45566799999999999999999999999999999999999999999999999999864
No 39
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.65 E-value=5.8e-17 Score=128.51 Aligned_cols=61 Identities=34% Similarity=0.696 Sum_probs=54.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
+..+++|++|+..|+.+||..|..++||+...|.+||..|||+++||+|||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3456667779999999999999999999999999999999999999999999999999985
No 40
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.64 E-value=3.9e-17 Score=123.11 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=56.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
+++|++||..|+.+||..|..++||+...+..||..+||+++||++||||||+|+|+...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 4567779999999999999999999999999999999999999999999999999986543
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.64 E-value=7.9e-17 Score=117.75 Aligned_cols=54 Identities=35% Similarity=0.639 Sum_probs=50.9
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
+.||..|+.+||..|..++||+...|.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 358999999999999999999999999999999999999999999999999985
No 42
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.64 E-value=5.6e-17 Score=127.68 Aligned_cols=58 Identities=12% Similarity=0.289 Sum_probs=52.8
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~-----~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
..+++|+.||.+|+.+|| .|.. ++||+...|.+||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 344555569999999999 7999 999999999999999999999999999999999985
No 43
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-17 Score=124.27 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=55.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
...|++||..|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34567799999999999999999999999999999999999999999999999999854
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.63 E-value=8e-17 Score=119.02 Aligned_cols=57 Identities=33% Similarity=0.518 Sum_probs=48.5
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
.+++|++|+..|+.+||..|..++||+..++..||..+||+++||++||||||+++|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 345566699999999999999999999999999999999999999999999999986
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1e-16 Score=129.39 Aligned_cols=62 Identities=35% Similarity=0.611 Sum_probs=54.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 34566677799999999999999999999999999999999999999999999999999864
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=2e-16 Score=121.04 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=56.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
..+++|++|+..|+.+||.+|.. ++||+..++.+||..+||+++||++||||||+|+|+..+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 44556667999999999999987 999999999999999999999999999999999998643
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=121.47 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=55.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
++.|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 45677799999999999999999999999999999999999999999999999999864
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.8e-16 Score=127.47 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=53.6
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
+.+++|.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 344799999999999999999999999999999999999999999999999999854
No 49
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.62 E-value=2.1e-16 Score=116.50 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=53.1
Q ss_pred CCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 60 KKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
++++|+..|+.+||..|.. ++||+..++..||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4567999999999999999 9999999999999999999999999999999999973
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.61 E-value=2.2e-16 Score=120.79 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.3
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
+++|++|+..|+.+|+.+| ..++||+..++..||..+||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 4567779999999999999 899999999999999999999999999999999999986543
No 51
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=1.2e-16 Score=123.25 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=54.1
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F-~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
.++++|++..|+.+||..| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3456679999999999999 999999999999999999999999999999999999975
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=1.7e-16 Score=118.43 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=54.3
Q ss_pred CCCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 57 VSEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
.++++++|+..|+.+||.+| ..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35566779999999999999 89999999999999999999999999999999999986
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.60 E-value=5e-16 Score=122.43 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=55.9
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
+++|++|+..|+.+||.+| ..++||+..+|..||..+||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 4567779999999999999 899999999999999999999999999999999999986543
No 54
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.60 E-value=3.2e-16 Score=123.29 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=55.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
+++++||+..|+.+||.+|.. ++||+..++..||..+||+++||++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 345666999999999999999 9999999999999999999999999999999999986543
No 55
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.9e-16 Score=123.20 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=53.7
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 59 kKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
.+++++|..|+.+||..|..++||+...|.+||..|||+++||+|||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3445599999999999999999999999999999999999999999999999998753
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.60 E-value=6.2e-16 Score=121.89 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=56.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 55 ~~~kkKRrRfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
...+++|++|+..|+.+|+.+|.. ++||+..+|.+||..+||+++||++||||||+|+|+..++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 345556667999999999999987 5999999999999999999999999999999999986443
No 57
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=7.3e-16 Score=123.92 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=56.6
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------CCCceEeehhhhhHHHhhHHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------LQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------LserQVkVWFQNRRaK~Kkkql 117 (338)
..++.|++|+..|+.+||..|..++||+..+|.+||..|+ |++.+|++||||||+|+|++..
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3455566699999999999999999999999999999999 9999999999999999998654
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-16 Score=121.77 Aligned_cols=55 Identities=42% Similarity=0.622 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqle 118 (338)
+|..|+..||..|..++||+...|.+||..|||+++||+|||||||+|+|+++..
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 7999999999999999999999999999999999999999999999999987543
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.58 E-value=8.8e-16 Score=121.47 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=54.0
Q ss_pred CCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
.+++|++|+..|+.+||.+|.. ++||+..+|..||..+||+++||++||||||+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4555667999999999999999 999999999999999999999999999999999983
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=115.96 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
-|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 57899999999999999999999999999999999999999999999999753
No 61
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=6.8e-16 Score=117.34 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=46.8
Q ss_pred HHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 66 VDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 66 ~~Ql~~LE~~F-~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
+.|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 578999999999999999999999999999999999974
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.55 E-value=1.4e-15 Score=133.15 Aligned_cols=60 Identities=28% Similarity=0.441 Sum_probs=53.5
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
..+++|++|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+|+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 445556669999999999999999999999999999999999999999999999999974
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-15 Score=114.08 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
..+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4679999999999999999999999999999999999999999999999876
No 64
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.54 E-value=1.6e-15 Score=131.21 Aligned_cols=59 Identities=32% Similarity=0.535 Sum_probs=53.9
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 57 ~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
.+++|++|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+|++
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 44455569999999999999999999999999999999999999999999999999975
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.53 E-value=3.9e-15 Score=128.91 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=54.4
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kk 114 (338)
..+++|++|+..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34445556999999999999999999999999999999999999999999999999986
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.53 E-value=2e-15 Score=133.04 Aligned_cols=61 Identities=31% Similarity=0.378 Sum_probs=51.8
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
..+++|++|+..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+..
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 3444555699999999999999999999999999999999999999999999999999864
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=119.42 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=56.0
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHh---------------------CCCCceEeehhhhhHHHhhH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQEL---------------------GLQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~L---------------------gLserQVkVWFQNRRaK~Kk 114 (338)
..++.|++|++.|+.+||..|..++||+...|++||..| +|++.+|++||||||+++|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 345556669999999999999999999999999999999 79999999999999999998
Q ss_pred HHH
Q 019637 115 KQL 117 (338)
Q Consensus 115 kql 117 (338)
++.
T Consensus 85 ~~~ 87 (102)
T 2da6_A 85 RQK 87 (102)
T ss_dssp HHH
T ss_pred hhH
Confidence 643
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.50 E-value=6.7e-15 Score=128.30 Aligned_cols=60 Identities=28% Similarity=0.387 Sum_probs=55.2
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkk 115 (338)
..+++|++|+..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 455566679999999999999999999999999999999999999999999999999973
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=1.1e-14 Score=112.18 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=52.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
..++.|+.|+.+|+.+|+.+|.. ++||+...|..||.+|||++++|+|||||||--.+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 34555566999999999999999 99999999999999999999999999999997654
No 70
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=8.5e-15 Score=111.13 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHHH
Q 019637 63 RLSVDQVKALEKNFE---VENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~---~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler~ 120 (338)
+|+.+|+.+|+.+|. .++||+..+|.+||..+||+++||++||||||+|+|+..+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 599999999999999 9999999999999999999999999999999999998765543
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.48 E-value=1e-14 Score=127.42 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=53.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHH
Q 019637 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 56 ~~kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkq 116 (338)
..+++|++|+..|+.+||..|..++||+...|..||..|||+++||+|||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 3455566699999999999999999999999999999999999999999999999999854
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.47 E-value=1e-14 Score=119.17 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=52.8
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------hC---CCCceEeehhhhhHHHhhHHH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQE------------------LG---LQPRQVAVWFQNRRARWKTKQ 116 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~------------------Lg---LserQVkVWFQNRRaK~Kkkq 116 (338)
++.|+.|+..|+.+||..|..++||+...|++||.. || |++.+|++||||||+++|+++
T Consensus 10 rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~ 89 (99)
T 1lfb_A 10 RRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH 89 (99)
T ss_dssp ---CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhc
Confidence 444555999999999999999999999999999999 88 999999999999999998765
Q ss_pred H
Q 019637 117 L 117 (338)
Q Consensus 117 l 117 (338)
.
T Consensus 90 ~ 90 (99)
T 1lfb_A 90 K 90 (99)
T ss_dssp -
T ss_pred h
Confidence 3
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=103.77 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHHHH
Q 019637 64 LSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkqler 119 (338)
|+..++.+|+.+|.. ++||+..+|.+||.++||+++||++||||||.|+++..+++
T Consensus 12 l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 899999999999987 99999999999999999999999999999999999865443
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.25 E-value=8.7e-13 Score=119.53 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=51.4
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCCceEeehhhhhHHHhhH
Q 019637 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARWKT 114 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------------LserQVkVWFQNRRaK~Kk 114 (338)
++.|+.|+..|+.+||..|..++||+...|++||..++ |++.+|++||||||+++|.
T Consensus 116 rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 116 RRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 34444599999999999999999999999999999999 9999999999999999875
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.4e-12 Score=98.72 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHH
Q 019637 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (338)
Q Consensus 66 ~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK 111 (338)
.+|+.+|+.+|..+++|+.+++..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.16 E-value=6.1e-12 Score=120.12 Aligned_cols=53 Identities=34% Similarity=0.534 Sum_probs=50.3
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
++.++..|+..||+.|..++||+..+|.+||+++||+++||++||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34499999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.08 E-value=3.6e-11 Score=110.94 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCCceEeehhhhhHHHh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARW 112 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------------LserQVkVWFQNRRaK~ 112 (338)
.|++.|+.+||..|..++||+...|++||..++ |++.||++||||||++.
T Consensus 148 ~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 148 KWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 489999999999999999999999999999988 89999999999999874
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.67 E-value=1.1e-09 Score=74.82 Aligned_cols=27 Identities=37% Similarity=0.975 Sum_probs=22.3
Q ss_pred ceEeehhhhhHHHhhHHHHHHHHHHHH
Q 019637 99 RQVAVWFQNRRARWKTKQLERDYGVLK 125 (338)
Q Consensus 99 rQVkVWFQNRRaK~Kkkqler~~~~lk 125 (338)
+||+|||||||+|||+++.++.+..++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 699999999999999998876655443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.29 E-value=0.067 Score=41.10 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhh
Q 019637 67 DQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (338)
Q Consensus 67 ~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQN 107 (338)
.-.+.|+.+|...+.+.......|+.+.+|+..||+-||-.
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 33578999999999999999999999999999999999954
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=76.97 E-value=6 Score=31.27 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 109 RaK~Kkkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
|.+.|+++.+.+ +......|..++..|+.+.+.|..|+..|+..|.
T Consensus 29 rSR~krk~r~~e---~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 29 KSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443332 2334455666666666667777777777766554
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.73 E-value=5.5 Score=30.87 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=24.4
Q ss_pred hHHHhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 108 RRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 108 RRaK~Kkkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
||.+.|+++.+.+ +......|..++..|+.+.+.|..|+..|+.-|
T Consensus 28 krSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555443332 223344555566666666666666666666544
No 82
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=74.88 E-value=2 Score=32.88 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=29.4
Q ss_pred CcCCHHHHHHHHHhhhhc-CCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 62 RRLSVDQVKALEKNFEVE-NKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~-~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
++++.++....-..+... .. ...++|+.+|++...|..|..
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 458888776555555332 22 356899999999999999975
No 83
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.02 E-value=4.2 Score=29.24 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=24.7
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 126 a~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
..+++|+.++..|+..++.|.+++.+|+++|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777888888888888888888775
No 84
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.18 E-value=8.3 Score=29.27 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=18.5
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
....|...+..+..+|+.|+.++..|..++.
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566677777777777666553
No 85
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=71.48 E-value=6.4 Score=29.08 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=22.2
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
..+.|......|..+|..|..++..|+..+.+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566667788999999999999887753
No 86
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.55 E-value=14 Score=27.08 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=23.9
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 122 ~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
..|......|...+..|..+...|..|+..||.-|.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566667777777777777777777776553
No 87
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=66.48 E-value=2.7 Score=29.59 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=30.7
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
+++++.+....+...+.. .........++|+++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456888887766444443 332112256899999999999999964
No 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.29 E-value=22 Score=25.57 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=22.1
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 122 ~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
..|....+.|...+..|..+...|..|+..|+..|
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666666666667777777777776654
No 89
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.33 E-value=9.4 Score=28.98 Aligned_cols=39 Identities=33% Similarity=0.351 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 019637 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELK 153 (338)
Q Consensus 115 kqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK 153 (338)
+.++.....|...+..+..++..|+.++..|..|+..||
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346666667777777778888888888888888877654
No 90
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=64.75 E-value=6 Score=31.44 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=36.8
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHH
Q 019637 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (338)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK 111 (338)
+|+++|.++...+-..+.....+. ..+||+.+|++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 456799999887777775555443 3368999999999999998766543
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=62.04 E-value=9.1 Score=27.82 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=12.9
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 019637 126 ANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (338)
Q Consensus 126 a~~d~l~~~~dsl~~ene~L~~E~~~LK~~ 155 (338)
.....|...+..|..+...|..|+..|+..
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 92
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.87 E-value=18 Score=28.85 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=34.8
Q ss_pred CCCCceEeehhhhhHHHhh-------HHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 95 GLQPRQVAVWFQNRRARWK-------TKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 95 gLserQVkVWFQNRRaK~K-------kkqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
||+..+|..|=|-||+-.- +.....+...|......|..+.+.|..|+..+..|+..+|.++.
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554443211 11122233445555556666677777777777777777776653
No 93
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.39 E-value=47 Score=24.07 Aligned_cols=35 Identities=34% Similarity=0.360 Sum_probs=19.7
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 122 ~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
..|....+.|...+..|..+...|..++..|+..|
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555566666666666666665544
No 94
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=54.20 E-value=6.4 Score=25.01 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
.++..+...+...+... . ...++|+.+|++...|..|..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHh
Confidence 47777775555555432 2 255889999999999988875
No 95
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=50.46 E-value=16 Score=27.50 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=29.7
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhh
Q 019637 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQ 106 (338)
++++++.++....-..+. ... ...+||+.+|++...|..|..
T Consensus 19 ~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 345689888655555554 222 255889999999999999963
No 96
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=48.30 E-value=54 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=22.0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
..+.|......|..+|..|..++..|+..+.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555566778888888888888877654
No 97
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=47.51 E-value=3.5 Score=26.85 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQN 107 (338)
.++.++...+...+... . ...+||+.+|++...|..|+..
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHH
Confidence 36666666555555433 2 3568899999999999988864
No 98
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=45.36 E-value=68 Score=25.15 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=24.3
Q ss_pred HHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 124 LKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 124 lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
-+.....+......|..+|..|+.++..|+..+.
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777778888888888888777664
No 99
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.04 E-value=21 Score=25.56 Aligned_cols=27 Identities=4% Similarity=0.043 Sum_probs=18.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 133 LNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 133 ~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
.+.+.|+.||+.|+.++..|++++.+-
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777666544
No 100
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=43.82 E-value=8 Score=29.25 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.0
Q ss_pred cccccCCCccccCc
Q 019637 307 MEEHNFFGDETCNF 320 (338)
Q Consensus 307 ~e~~~~~~~e~c~f 320 (338)
+|+||+|+||-+.|
T Consensus 59 ~e~~G~f~de~R~f 72 (72)
T 2adl_A 59 IEMNGSFADENKDW 72 (72)
T ss_dssp CSCSCCCSSSCCCC
T ss_pred HHHhCCChHhccCC
Confidence 58889988887765
No 101
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=41.67 E-value=65 Score=22.85 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 119 RDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 119 r~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
+....||..++.|......++.....+.+|+.+|+.-|.+
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4456778888888888888888889999999999887754
No 102
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.01 E-value=78 Score=24.67 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 019637 136 DSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 136 dsl~~ene~L~~E~~~LK~~l 156 (338)
+.+.++|++|+.|...-+++|
T Consensus 51 ~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 51 EELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544444443
No 103
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=40.52 E-value=20 Score=26.93 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 112 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~ 112 (338)
++..+..+|.-.|-... .-.++|..+|++...|+.+...-|.+.
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 78888888877653322 356889999999999987765433333
No 104
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.46 E-value=81 Score=21.81 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
+++.+.+.|...++.|+..+-.-+.-..-|.+|+..|+.++
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 45555556666566666555555555566777777777765
No 105
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=38.96 E-value=65 Score=24.58 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=33.9
Q ss_pred CCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCC--CCceEeehh
Q 019637 61 KRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGL--QPRQVAVWF 105 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~-----~~yPs~~~R~eLA~~LgL--serQVkVWF 105 (338)
...++.+|+..|..+|.. +.+.+..+...+.+.+|+ +..+|+.+|
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344899999999999974 567888888888888875 455555444
No 106
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.58 E-value=78 Score=24.66 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=20.7
Q ss_pred HHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 120 ~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
+...||..+..|......++...+.|..++.+|+....
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44444444444444444444444557777777776653
No 107
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=38.41 E-value=1.1e+02 Score=23.52 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=25.9
Q ss_pred HHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 123 VLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 123 ~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
.-+.....+......|..+|..|+.++..|+..+.
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777778888888888888888887764
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.96 E-value=80 Score=22.94 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=19.7
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 126 a~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
.....|......|..+|..|..++..|+..+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666554
No 109
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=37.91 E-value=77 Score=25.20 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
.+++.|..++...|.... .-.++|..+|++...|+.|...-|.+.+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 378888888887764332 2468899999999999998865454444
No 110
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.46 E-value=89 Score=22.41 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=24.1
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
....|......|..+|..|..++..|+..+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888877653
No 111
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.47 E-value=42 Score=31.27 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019637 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKS 154 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~ 154 (338)
.++++...|.+.+..|......++.+...|+.|+..|+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555566666665665555555555555555555544
No 112
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.08 E-value=89 Score=22.21 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=13.8
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 128 YDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 128 ~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
...|...+..|......-+.++..|++.+
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555544
No 113
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.17 E-value=92 Score=22.21 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=22.9
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 126 a~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
.....|......+..+|..|..++..|+..+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777776653
No 114
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=33.45 E-value=26 Score=25.15 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=16.5
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
-.+.+...+..+..+|..|+.++..|+++|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555566666777777777777776654
No 115
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.78 E-value=1.1e+02 Score=25.60 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=15.7
Q ss_pred HHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 019637 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (338)
Q Consensus 120 ~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~ 155 (338)
+...||...-.++...+.+..+++.|++++..|+.+
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 116
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.70 E-value=88 Score=24.69 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
+++.+..+|.-.|.... .-.++|..+|++...|+.+...-|.+-|
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 77888888877654332 3468899999999999888764444443
No 117
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.61 E-value=1.2e+02 Score=25.33 Aligned_cols=43 Identities=33% Similarity=0.292 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 115 kqler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
..++.+...+......|+++.-+.+.+.+.+.+++..|+.++.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566666666666666667766666666654
No 118
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.74 E-value=1.4e+02 Score=21.42 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=24.9
Q ss_pred HhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019637 125 KANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 125 ka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
+.....|......|..+|..|..++..|+..+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888888887777653
No 119
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.29 E-value=1.7e+02 Score=24.01 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhh
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQN 107 (338)
.|.|+..++..|... ...+.+|++-..|+..+..
T Consensus 38 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 38 VRKFGAEDLRWILFT-------------RQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp CBCBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHH
Confidence 445999999988543 2246677777777666543
No 120
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=30.70 E-value=1.5e+02 Score=24.20 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhHHHhhh----hhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 116 QLERDYGVLKANYDALKLN----YDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~----~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
.+.-+...|+.-+...+.+ ...|+.+...|+.....|+.++.+
T Consensus 14 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iRe 60 (111)
T 2v66_B 14 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444332 223555555555555555555543
No 121
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=30.51 E-value=90 Score=22.82 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 117 LERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 117 ler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
.+++...||+.+..|......|+.++....+|+.+|..-|.+.
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455667788888888888888888888999999998877654
No 122
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.39 E-value=59 Score=26.28 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=24.4
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
.++.++...+.|..|+..|++++..|..+|-.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777888888888888888887754
No 123
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.85 E-value=87 Score=25.99 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=23.6
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhh
Q 019637 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNR 108 (338)
.|.|+..++..|... ...+.+|++-..|+..+...
T Consensus 52 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 52 DRIFNEEALKYLEMI-------------LCLKNTGMPIQKIKQFIDWS 86 (148)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHTTTCCHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHhh
Confidence 345999999988542 22466777777777766543
No 124
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=29.82 E-value=45 Score=27.38 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=35.8
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHH----Hh--CCCCceEeehhhhh
Q 019637 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQ----EL--GLQPRQVAVWFQNR 108 (338)
Q Consensus 58 kkKRrRfT~~Ql~~LE~~F-~~~~yPs~~~R~eLA~----~L--gLserQVkVWFQNR 108 (338)
+++|+++|.+|...|-..+ ..++..+.. +||+ ++ +++...|.-|..++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5567779999999999988 566666544 4555 77 77888888887653
No 125
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=29.24 E-value=26 Score=24.21 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRR 109 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRR 109 (338)
+++.+..+|...|-.. + .-.++|..+|++...|+.+...-|
T Consensus 16 L~~~~r~il~l~~~~g-~----s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 16 LTTDQREALLLTQLLG-L----SYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCHHHHHHHHHHHTSC-C----CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7888888888766432 1 245889999999999887765333
No 126
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.63 E-value=89 Score=25.20 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=31.8
Q ss_pred CCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCCc
Q 019637 60 KKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPR 99 (338)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~-----~~yPs~~~R~eLA~~LgLser 99 (338)
++.++|.+|+..|..+|.. ..+.+..+...+.+.+|+.+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 4556999999999999974 557888888888888887653
No 127
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=27.69 E-value=40 Score=25.79 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCcCCHHHHHHHHHhh-hhc-CCCCH-HHHHHHHHHhCCCCceEeehhh
Q 019637 61 KRRLSVDQVKALEKNF-EVE-NKLEP-ERKVKLAQELGLQPRQVAVWFQ 106 (338)
Q Consensus 61 RrRfT~~Ql~~LE~~F-~~~-~yPs~-~~R~eLA~~LgLserQVkVWFQ 106 (338)
+++|+.++....-..+ ... .+++. .....+|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4468888776554444 322 12332 3567899999999999998864
No 128
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=27.26 E-value=2.1e+02 Score=22.10 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=17.6
Q ss_pred hHHHhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHH
Q 019637 108 RRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALL 146 (338)
Q Consensus 108 RRaK~Kkkqler~~~~lka~~d~l~~~~dsl~~ene~L~ 146 (338)
||.+.+-.+..-+...|+.--+.|+.....|+.-...|.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~ 52 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455555444444555555444444444433333333333
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.08 E-value=42 Score=26.39 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhH
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRR 109 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRR 109 (338)
+++.+..+|. .|- .. ..-.++|..+|++...|+.+...-|
T Consensus 110 L~~~~r~v~~-~~~-~g----~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-RG----YSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp SCHHHHHHHH-HHT-TT----CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-cC----CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6777777777 332 22 2356899999999999987765333
No 130
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.77 E-value=45 Score=26.01 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=30.5
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhh
Q 019637 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (338)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQN 107 (338)
..+++.+..+|.-.+. .+ .-.++|..||+++..|+.+..+
T Consensus 33 ~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAE--GF----LVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp SSCCHHHHHHHHHHHH--TC----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 3499999999977553 22 2368999999999999877653
No 131
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.35 E-value=83 Score=24.67 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019637 118 ERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 118 er~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l 156 (338)
+.....|+...+.+..+...+..+...|..++..+|.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445555666666666666666666666666666666654
No 132
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.93 E-value=1.7e+02 Score=22.81 Aligned_cols=39 Identities=10% Similarity=0.281 Sum_probs=22.5
Q ss_pred HHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019637 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 120 ~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
+....+..+-.+...-......|..|..++..|+.+|.+
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433334433444455677777777777777765
No 133
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.92 E-value=68 Score=19.91 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 019637 138 LQHDNEALLKEIRELKSKL 156 (338)
Q Consensus 138 l~~ene~L~~E~~~LK~~l 156 (338)
+.-+|+.|.+.+..||.++
T Consensus 5 lefendaleqkiaalkqki 23 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3344555555555555443
No 134
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.45 E-value=33 Score=26.11 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
.++..+..+|.-.+. .+ ...++|..+|++...|+.+..+-|.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--GL----TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 489999999988532 22 2368999999999999877654444433
No 135
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.16 E-value=1.8e+02 Score=25.85 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=27.1
Q ss_pred hHHHhhHHHHHHHHHHHHhhhHHHhhh----hhhhHHHHHHHHHHHHHHHHHhh
Q 019637 108 RRARWKTKQLERDYGVLKANYDALKLN----YDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 108 RRaK~Kkkqler~~~~lka~~d~l~~~----~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
+-.+.+..++..+...+|.-+.....+ ...|+.+...|+..+..|+.++.
T Consensus 59 ~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 59 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555444 44555666666666666666554
No 136
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=24.74 E-value=45 Score=27.66 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=21.7
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 70 KALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 70 ~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
.++.-.|+.++||..+-- +|- =.|||.+||.++.
T Consensus 16 RiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQr 49 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHHH
Confidence 445556889999875411 110 1699999998654
No 137
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=24.54 E-value=61 Score=24.79 Aligned_cols=33 Identities=27% Similarity=0.604 Sum_probs=22.3
Q ss_pred HHHHHHhhhhcCCCCHHH--HHHHHHHhCCCCceEeehhhhhHHHhhHHHH
Q 019637 69 VKALEKNFEVENKLEPER--KVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (338)
Q Consensus 69 l~~LE~~F~~~~yPs~~~--R~eLA~~LgLserQVkVWFQNRRaK~Kkkql 117 (338)
+.++.-.|+.++||+++- ... .|||.+|+.++.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrqaR----------------RNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQAR----------------RNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHHHH----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchHHH----------------HHHHHHHHHHHH
Confidence 345556688999987542 122 589999997654
No 138
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.70 E-value=74 Score=22.88 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhh
Q 019637 136 DSLQHDNEALLKEIRELKSKLNE 158 (338)
Q Consensus 136 dsl~~ene~L~~E~~~LK~~l~~ 158 (338)
|.|-++.+.|+.|+..|+.+|.+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHh
Confidence 33444444555555555544443
No 139
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.82 E-value=54 Score=21.72 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=9.5
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 019637 134 NYDSLQHDNEALLKEIRE 151 (338)
Q Consensus 134 ~~dsl~~ene~L~~E~~~ 151 (338)
+-+.++++|..|..+++.
T Consensus 15 DIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 15 DIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 334445556666665544
No 140
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.81 E-value=2e+02 Score=20.35 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHH
Q 019637 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIREL 152 (338)
Q Consensus 116 qler~~~~lka~~d~l~~~~dsl~~ene~L~~E~~~L 152 (338)
.+.++...|.+.+..|...-..-+.+...|++++..|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666666666666777777776665
No 141
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=22.80 E-value=1.1e+02 Score=20.23 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhh
Q 019637 135 YDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 135 ~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
.+.|..+|..|..|+.+||+-|.
T Consensus 10 VEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 10 VXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh
Confidence 34566688999999999998764
No 142
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.59 E-value=3.1e+02 Score=23.78 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHhhh
Q 019637 64 LSVDQVKALEKNFE 77 (338)
Q Consensus 64 fT~~Ql~~LE~~F~ 77 (338)
+|++|...+...++
T Consensus 68 LT~EQq~ql~~I~~ 81 (175)
T 3lay_A 68 LTTEQQATAQKIYD 81 (175)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777766654
No 143
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=21.73 E-value=50 Score=23.52 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQN 107 (338)
+++.+..+|...|..... ....-.++|..+|++...|+.+...
T Consensus 11 L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 889999999888852100 0112458899999999999877643
No 144
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=21.31 E-value=2.6e+02 Score=23.27 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=9.2
Q ss_pred hhhHHHhhHHHHHHHHHHH
Q 019637 106 QNRRARWKTKQLERDYGVL 124 (338)
Q Consensus 106 QNRRaK~Kkkqler~~~~l 124 (338)
+|.+.+.+...+..+...+
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l 41 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4555555544444444433
No 145
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=21.07 E-value=1.1e+02 Score=21.92 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=20.6
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019637 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (338)
Q Consensus 127 ~~d~l~~~~dsl~~ene~L~~E~~~LK~~l~~~ 159 (338)
.|+.|....+.|+.||.-|++|+..--..|.+-
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 455566666666667777777766655555443
No 146
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.96 E-value=44 Score=23.26 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHH
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRA 110 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRa 110 (338)
.+++.+..+|...+ ..+ ...++|..+|++...|..+...-+.
T Consensus 11 ~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 11 LLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 48999999998842 222 3458999999999998877654333
No 147
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=20.87 E-value=40 Score=23.66 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhh
Q 019637 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (338)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQN 107 (338)
+++.+..+|...|....+- ...-.++|..+|++...|+.+...
T Consensus 6 L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~r 48 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 7888999998887321110 112457899999999999877643
No 148
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.76 E-value=48 Score=24.74 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHhh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~K 113 (338)
.++..+..+|.-.+. .+ .-.++|..+|++...|+.+..+-|.|.+
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 389999999987532 22 2347899999999999887664444433
No 149
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.73 E-value=1.1e+02 Score=20.02 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhh
Q 019637 135 YDSLQHDNEALLKEIRELKSKLN 157 (338)
Q Consensus 135 ~dsl~~ene~L~~E~~~LK~~l~ 157 (338)
.+.|..+|..|..|+.+||+-|.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhh
Confidence 45566789999999999998664
No 150
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.62 E-value=77 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhhhHHHh
Q 019637 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 112 (338)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQNRRaK~ 112 (338)
.++..+..+|.-.+ ..+ .-.++|..+|++...|+.+..+-+.|.
T Consensus 21 ~Lt~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKLIA--QGL----PNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 49999999998843 222 356899999999999987765444333
No 151
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.08 E-value=54 Score=25.55 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=31.1
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCCceEeehhhh
Q 019637 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (338)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVkVWFQN 107 (338)
+.++.++...+...+... . ...++|+.+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 458888877777666533 2 2567899999999999999864
Done!