BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019638
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 166/313 (53%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG HT G C F
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRF 180
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + +D T IFD++ ++N++
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEE 240
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 241 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 166/313 (53%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP+ ++ LK FR GL+ DLV LSGG HT G C F
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRF 180
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 241 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 165/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG HT G C F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRF 179
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 240 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 165/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG HT G C F
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRF 180
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 241 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 165/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG HT G C F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRF 179
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 240 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 165/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG HT G C F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRF 179
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 240 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 169/313 (53%), Gaps = 19/313 (6%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGEE 90
QL Y+K+CPN IV + + AA L+RL FHDC+V GCDAS+L+D G +
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD-GAD 59
Query: 91 GERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTG 149
E+ A N+ GFE+I+ KA +E CPGVVSCADI+ LAARD V L GP + V G
Sbjct: 60 SEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALG 119
Query: 150 RRDGKVSSKSLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVR 209
R+DG V++++ A+NLP + + + +KF L+ D+V LS G HT G C R
Sbjct: 120 RKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALS-GAHTFGQAKCAVFSNR 178
Query: 210 LYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNGFAV 269
L+NFT G D + L L++ CP G+ N PLD T FD+ F N+ G +
Sbjct: 179 LFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGL 238
Query: 270 IASDARLYDDE----NTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
++SD L+ + TK+++E F DF AM++MGN + G
Sbjct: 239 LSSDQILFSSDLAVNTTKKLVE----------AYSRSQSLFFRDFTCAMIRMGN--ISNG 286
Query: 326 SEGEIRRVCAAVN 338
+ GE+R C +N
Sbjct: 287 ASGEVRTNCRVIN 299
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 165/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG HT G C F
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRF 180
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 241 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 165/312 (52%), Gaps = 13/312 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDN--G 88
QL FYS TCPNA +IV S Q+ + D A L+RL FHDC+V GCDASIL+D+
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 89 EEGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
+ E+ A N+ GF +++ K LE CPGVVSC+D++ALA+ V+L GP + V
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFM 206
GRRD ++ + A+ ++P +S+ + KF GL+ DLV LS G HT G C
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALS-GAHTFGRARCGVF 180
Query: 207 QVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNG 266
RL+NF+ G DP +N L L+ CP G +T LD T FD+ F N+++
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSN 240
Query: 267 FAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTGS 326
++ SD L+ + I F FA++M+ MGN+ TGS
Sbjct: 241 DGLLQSDQELFSTTGSSTI--------AIVTSFASNQTLFFQAFAQSMINMGNISPLTGS 292
Query: 327 EGEIRRVCAAVN 338
GEIR C VN
Sbjct: 293 NGEIRLDCKKVN 304
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 165/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG H+ G C F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HSFGKNQCRF 179
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 240 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 164/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV L GG HT G C F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGG-HTFGKNQCRF 179
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 240 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 164/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL FHDC+V GCDASIL+DN
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG HT G C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRS 180
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 241 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 164/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +LRL F DC+V GCDASIL+DN
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG HT G C F
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRF 180
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 241 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 173/314 (55%), Gaps = 19/314 (6%)
Query: 32 LQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDN--GE 89
LQ+GFY+ +CP AES+V F + G A L+R+ FHDC+V GCDAS+L+D+
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 90 EGERKA-SGNLGVGGFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPT 148
E+ A N + GFE+I AK+ +E CP VSCADI+A AARD L Y+VP+
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 149 GRRDGKVSSKSLAD-NLPE-VDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFM 206
GRRDG VS S A+ +P + ++ QL+ S F K L+ ++V LS G H+IG+ C
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINS-FANKTLTADEMVTLS-GAHSIGVAHCSSF 179
Query: 207 QVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRI--PLDPVTDFIFDDQIFLNIK 264
RLYNF G G DP ++P + L++ CP T I LD +T + D+ + ++
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239
Query: 265 NGFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKT 324
++ SD L + N ++ + + FA+AMVKMG + V T
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVK----------ANAMNLTAWASKFAQAMVKMGQIEVLT 289
Query: 325 GSEGEIRRVCAAVN 338
G++GEIR C+ VN
Sbjct: 290 GTQGEIRTNCSVVN 303
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 167/311 (53%), Gaps = 22/311 (7%)
Query: 32 LQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGEE- 90
L FY+ CPNA S + S ++ A LLRL FHDC+V+GCDAS+L+D+
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 91 -GERKASGNLG-VGGFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPT 148
GE+ A N + GFE+I+ K+++E +CPGVVSCADI+A+AARD V + G + V
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 149 GRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQ 207
GRRD +S S A+ +LP ++ L S F KG + ++LV LS G HTIG C +
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLS-GAHTIGQAQCTAFR 180
Query: 208 VRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNGF 267
R+YN + I+P + K L++ CP G P D T FD+ ++N++N
Sbjct: 181 TRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKK 233
Query: 268 AVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTGSE 327
++ SD +L++ +T + F DF AM+KMGNL TG+
Sbjct: 234 GLLHSDQQLFNGVSTDSQVT----------AYSNNAATFNTDFGNAMIKMGNLSPLTGTS 283
Query: 328 GEIRRVCAAVN 338
G+IR C N
Sbjct: 284 GQIRTNCRKTN 294
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 163/313 (52%), Gaps = 13/313 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +CPN +IV DP AA +L L F DC+V GCDASIL+DN
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 90 -EGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E+ A GN GF +I+ KA +E CP VSCAD++ +AA+ V L GP + VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLS-DRDLVLLSGGGHTIGLTACFF 205
GRRD + LA+ NLP ++ LK FR GL+ DLV LSGG HT G C F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGG-HTFGKNQCRF 179
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ RLYNF+ G DP +N +L+ L+ CP G+ + + D T IFD++ ++N++
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+I SD L+ N + F F +AM +MGN+ TG
Sbjct: 240 QKGLIQSDQELFSSPNATDTIP-------LVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SEGEIRRVCAAVN 338
++G+IR C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 164/313 (52%), Gaps = 13/313 (4%)
Query: 30 GQLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE 89
G L FY+ TCPNA ++V ++ Q+ F+ D A L+RL FHDC+V GCDASIL+DN
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 90 E--GERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEV 146
E+ A N GF +++ K LE CPGVVSC D++ALA++ V+L GP + V
Sbjct: 62 SIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTV 121
Query: 147 PTGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFF 205
GRRD ++++ A+ ++P + + SKF GL+ DLV LS G HT G C
Sbjct: 122 DLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALS-GAHTFGRATCGV 180
Query: 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
RL+NF+ G DP +N L L+ CP +G + LD T FD+ F N+++
Sbjct: 181 FSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQS 240
Query: 266 GFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
++ SD L+ + I F FA++M+ MGN+ TG
Sbjct: 241 NNGLLQSDQELFSTTGSATI--------AIVTSFASNQTLFFQAFAQSMINMGNISPLTG 292
Query: 326 SEGEIRRVCAAVN 338
S GEIR C N
Sbjct: 293 SSGEIRLDCKKTN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 167/312 (53%), Gaps = 13/312 (4%)
Query: 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGE- 89
QL FY +TCPN IV V DP A L+RL FHDC+V+GCD S+L++N +
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 90 -EGERKASGNLG-VGGFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVP 147
E E+ A N+ + G +++ + K +E CP VSCADI+A+AA L GP + VP
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 148 TGRRDGKVSSKSLAD-NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFM 206
GRRD ++++LA+ NLP ++ LK+ F +GL+ DLV LS GGHT G C
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLS-GGHTFGRARCSTF 179
Query: 207 QVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNG 266
RLYNF+ G DP +N +L+ L+++CP + LD T FD++ + N+
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQL 239
Query: 267 FAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTGS 326
++ SD L+ I F ++F +M+KMGN+GV TG
Sbjct: 240 NGLLQSDQELFSTPGADTI--------PIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGD 291
Query: 327 EGEIRRVCAAVN 338
EGEIR C VN
Sbjct: 292 EGEIRLQCNFVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 175/314 (55%), Gaps = 24/314 (7%)
Query: 32 LQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGEE- 90
L FY +TCP AESIV Q+ +D G AA LLRL FHDC+V+GCDAS+L+D
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 91 -GERKASGNLGV--GGFEIIEEAKAKLEGICPG-VVSCADIVALAARDGVALVKGPFYEV 146
GE++A NL + F+ + + + +LE C G VVSC+DI+ALAARD V + GP Y V
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 147 PTGRRDGK--VSSKSLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACF 204
P GRRD + S++ + +LP ++Q L + + GL DLV +S GGHTIGL C
Sbjct: 129 PLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTIS-GGHTIGLAHCS 187
Query: 205 FMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIK 264
+ RL+ DP I+P FL +LK CP +G + R LD T +FD++ ++++
Sbjct: 188 SFEDRLFP-----RPDPTISPTFLSRLKRTCPAKGT-DRRTVLDVRTPNVFDNKYYIDLV 241
Query: 265 NGFAVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKT 324
N + SD L+ + T+ I+E F F ++ KMG + V+T
Sbjct: 242 NREGLFVSDQDLFTNAITRPIVE----------RFAQSQQDFFEQFGVSIGKMGQMRVRT 291
Query: 325 GSEGEIRRVCAAVN 338
+GE+RR C+ N
Sbjct: 292 SDQGEVRRNCSVRN 305
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 106/294 (36%), Gaps = 61/294 (20%)
Query: 37 YSKTCPNAESIVSSVTQKT--FERDPGSAAVLLRLQFHDCYVEGCDASILIDNGEEGERK 94
Y P+ + + +K F + A ++LRL +H G S G G K
Sbjct: 4 YPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSA---GTFDSKTKTGGPFGTIK 60
Query: 95 ASGNLGVGGFEIIEEAKAKLEGICPG--VVSCADIVALAARDGVALVKGPFYEVPTGRRD 152
L G ++ A LE I +VS AD LA V + GP GR D
Sbjct: 61 HQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGRED 120
Query: 153 GKVSSKSLADNLPEVDDSIQLLKSKF-RQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLY 211
LP+ L+ F + GLSD+D+V LS GGHTIG
Sbjct: 121 KPEPPPE--GRLPDATKGSDHLRDVFGKAMGLSDQDIVALS-GGHTIGAAH--------- 168
Query: 212 NFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNI----KNGF 267
K + F+G P T PL IFD+ F + K+G
Sbjct: 169 --------------------KERSGFEG-PWTSNPL------IFDNSYFTELLTGEKDGL 201
Query: 268 AVIASDARLYDDENTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLG 321
+ SD L D + ++E F AD+A+A +K+ LG
Sbjct: 202 LQLPSDKALLTDSVFRPLVE----------KYAADEDVFFADYAEAHLKLSELG 245
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 106/285 (37%), Gaps = 69/285 (24%)
Query: 65 VLLRLQFHDCYVE-----------GCDASILIDNGEEGERKASGNLG-VGGFEIIEEAKA 112
+++RL +HD G + S+ D E K N G V +++ K
Sbjct: 27 IMVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDV----ELKHGANAGLVNALNLLKPIKD 82
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD-NLPEV--DD 169
K G V+ AD+ LA+ + GP + GR D + + LP+
Sbjct: 83 KYSG-----VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPS 137
Query: 170 SIQLLKSKFRQKGLSDRDLVLLSGGGHTIG-----LTACFFMQVRLYNFTPGGGSDPAIN 224
Q L+ F + GL+D+++V LS G HT+G + + + PG +
Sbjct: 138 PAQHLRDVFYRMGLNDKEIVALS-GAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWT 196
Query: 225 PEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIK----NGFAVIASDARLYDDE 280
++LK FD+ F +IK V+ +DA L++D
Sbjct: 197 AQWLK-------------------------FDNSYFKDIKERRDEDLLVLPTDAALFEDP 231
Query: 281 NTKRILEXXXXXXXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTG 325
+ K E F D+A+A K+ NLG K G
Sbjct: 232 SFKVYAE----------KYAADPEAFFKDYAEAHAKLSNLGAKFG 266
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I G D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V LS G HT+G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALS-GAHTLGKT 180
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 99/275 (36%), Gaps = 65/275 (23%)
Query: 63 AAVLLRLQFHDC--YVEGCDASI---LIDNGEEGERKASGNLGVGGFEIIEEAKAKLEGI 117
A ++LRL +H + +G I + E A+ L + ++E KA+
Sbjct: 44 APLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIA-VRLLEPLKAEFP-- 100
Query: 118 CPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSK 177
++S AD LA V + GP GR D LP+ L+
Sbjct: 101 ---ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDV 155
Query: 178 F-RQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCP 236
F + GL+D+D+V LS GGHTIG K +
Sbjct: 156 FGKAMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSG 185
Query: 237 FQGDPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXX 292
F+G P T PL IFD+ F + K G + SD L D + +++
Sbjct: 186 FEG-PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD----- 233
Query: 293 XXXXXXXXXXXXXFKADFAKAMVKMGNLGVKTGSE 327
F AD+A+A K+ LG E
Sbjct: 234 -----KYAADEDAFFADYAEAHQKLSELGFADAHE 263
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 98/269 (36%), Gaps = 65/269 (24%)
Query: 63 AAVLLRLQFHDC--YVEGCDASI---LIDNGEEGERKASGNLGVGGFEIIEEAKAKLEGI 117
A ++LRL +H + +G I + E A+ L + ++E KA+
Sbjct: 44 APLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIA-VRLLEPLKAEFP-- 100
Query: 118 CPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSK 177
++S AD LA V + GP GR D LP+ L+
Sbjct: 101 ---ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDV 155
Query: 178 F-RQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCP 236
F + GL+D+D+V LS GGHTIG K +
Sbjct: 156 FGKAMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSG 185
Query: 237 FQGDPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXX 292
F+G P T PL IFD+ F + K G + SD L D + +++
Sbjct: 186 FEG-PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD----- 233
Query: 293 XXXXXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 234 -----KYAADEDAFFADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 98/269 (36%), Gaps = 65/269 (24%)
Query: 63 AAVLLRLQFHDC--YVEGCDASI---LIDNGEEGERKASGNLGVGGFEIIEEAKAKLEGI 117
A ++LRL +H + +G I + E A+ L + ++E KA+
Sbjct: 32 APLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIA-VRLLEPLKAEFP-- 88
Query: 118 CPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSK 177
++S AD LA V + GP GR D LP+ L+
Sbjct: 89 ---ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDV 143
Query: 178 F-RQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCP 236
F + GL+D+D+V LS GGHTIG K +
Sbjct: 144 FGKAMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSG 173
Query: 237 FQGDPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXX 292
F+G P T PL IFD+ F + K G + SD L D + +++
Sbjct: 174 FEG-PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD----- 221
Query: 293 XXXXXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 222 -----KYAADEDAFFADYAEAHQKLSELG 245
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 54/206 (26%)
Query: 121 VVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKF-R 179
++S AD LA V + GP GR D LP+ L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 146
Query: 180 QKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQG 239
GL+D+D+V LS GGHTIG K + F+G
Sbjct: 147 AMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSGFEG 176
Query: 240 DPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXXXXX 295
P T PL IFD+ F + K G + SD L D + +++
Sbjct: 177 -PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD-------- 221
Query: 296 XXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 222 --KYAADEDAFFADYAEAHQKLSELG 245
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 54/206 (26%)
Query: 121 VVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKF-R 179
++S AD LA V + GP GR D LP+ L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 146
Query: 180 QKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQG 239
GL+D+D+V LS GGHTIG K + F+G
Sbjct: 147 AMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSGFEG 176
Query: 240 DPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXXXXX 295
P T PL IFD+ F + K G + SD L D + +++
Sbjct: 177 -PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD-------- 221
Query: 296 XXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 222 --KYAADEDAFFADYAEAHQKLSELG 245
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 53/213 (24%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---TSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 98 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAD 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLK 232
+++ F++ ++DR++V L G HT+G T LK
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHTLGKTH-------------------------LKNSG 186
Query: 233 SKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKN 265
+ P+ +PN +FD+ +LN+ N
Sbjct: 187 YEGPWTANPN-----------VFDNSFYLNLLN 208
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 54/206 (26%)
Query: 121 VVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKF-R 179
++S AD LA V + GP GR D LP+ L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 180 QKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQG 239
GL+D+D+V LS GGHTIG K + F+G
Sbjct: 159 AMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSGFEG 188
Query: 240 DPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXXXXX 295
P T PL IFD+ F + K G + SD L D + +++
Sbjct: 189 -PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD-------- 233
Query: 296 XXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 234 --KYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 54/206 (26%)
Query: 121 VVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKF-R 179
++S AD LA V + GP GR D LP+ L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 180 QKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQG 239
GL+D+D+V LS GGHTIG K + F+G
Sbjct: 159 AMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSGFEG 188
Query: 240 DPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXXXXX 295
P T PL IFD+ F + K G + SD L D + +++
Sbjct: 189 -PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD-------- 233
Query: 296 XXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 234 --KYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 54/206 (26%)
Query: 121 VVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKF-R 179
++S AD LA V + GP GR D LP+ L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 146
Query: 180 QKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQG 239
GL+D+D+V LS GGHTIG K + F+G
Sbjct: 147 AMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSGFEG 176
Query: 240 DPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXXXXX 295
P T PL IFD+ F + K G + SD L D + +++
Sbjct: 177 -PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD-------- 221
Query: 296 XXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 222 --KYAADEDAFFADYAEAHQKLSELG 245
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 54/206 (26%)
Query: 121 VVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKF-R 179
++S AD LA V + GP GR D LP+ L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 180 QKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQG 239
GL+D+D+V LS GGHTIG K + F+G
Sbjct: 159 AMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSGFEG 188
Query: 240 DPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXXXXX 295
P T PL IFD+ F + K G + SD L D + +++
Sbjct: 189 -PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD-------- 233
Query: 296 XXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 234 --KYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 54/206 (26%)
Query: 121 VVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKF-R 179
++S AD LA V + GP GR D LP+ L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 180 QKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQG 239
GL+D+D+V LS GGHTIG K + F+G
Sbjct: 159 AMGLTDQDIVALS-GGHTIGAAH-----------------------------KERSGFEG 188
Query: 240 DPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXXXXX 295
P T PL IFD+ F + K G + SD L D + +++
Sbjct: 189 -PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD-------- 233
Query: 296 XXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 234 --KYAADEDAFFADYAEAHQKLSELG 257
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 100 GVGGFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKS 159
G G +I +A L+ P + S AD+ LAA + + GP GR D K S
Sbjct: 65 GNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVC 123
Query: 160 LAD-NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFF 205
D LP+ + ++ FR+ G +D++ V L G HT G T F
Sbjct: 124 GPDGRLPDGSKTQSHVREVFRRLGFNDQETVALI-GAHTCGETHIEF 169
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---TSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 98 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAD 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G HT+G T
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHTLGKT 180
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 97/269 (36%), Gaps = 65/269 (24%)
Query: 63 AAVLLRLQFHDC--YVEGCDASI---LIDNGEEGERKASGNLGVGGFEIIEEAKAKLEGI 117
A ++LRL +H + +G I + E A+ L + ++E KA+
Sbjct: 44 APLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIA-VRLLEPLKAEFP-- 100
Query: 118 CPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSK 177
++S AD LA V + GP GR D LP+ L+
Sbjct: 101 ---ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDV 155
Query: 178 F-RQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCP 236
F + GL+D+D+V LS GGHTIG K
Sbjct: 156 FGKAMGLTDQDIVALS-GGHTIGAAH-----------------------------KEASG 185
Query: 237 FQGDPNTRIPLDPVTDFIFDDQIFLNI----KNGFAVIASDARLYDDENTKRILEXXXXX 292
F+G P T PL IFD+ F + K G + SD L D + +++
Sbjct: 186 FEG-PWTSNPL------IFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD----- 233
Query: 293 XXXXXXXXXXXXXFKADFAKAMVKMGNLG 321
F AD+A+A K+ LG
Sbjct: 234 -----KYAADEDAFFADYAEAHQKLSELG 257
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---TSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 98 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAD 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G HT+G T
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHTLGKT 180
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G HT+G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHTLGKT 180
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL FH + G G G E N G+ GF+ +E
Sbjct: 43 GYGPVLVRLAFH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 99
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 100 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 154
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 155 YVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 100 GVGGFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKS 159
G G +I +A L+ P + S AD+ LAA + + GP GR D K S
Sbjct: 64 GNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVC 122
Query: 160 LAD-NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIG 199
D LP+ + ++ FR+ G +D++ V L G HT G
Sbjct: 123 GPDGRLPDGSKTQSHVREVFRRLGFNDQETVALI-GAHTCG 162
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 43 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 99
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 100 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDAG 154
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 155 YVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 100 GVGGFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKS 159
G G +I +A L+ P + S AD+ LAA + + GP GR D K S
Sbjct: 65 GNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVC 123
Query: 160 LAD-NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIG 199
D LP+ + ++ FR+ G +D++ V L G HT G
Sbjct: 124 GPDGRLPDGSKTQSHVREVFRRLGFNDQETVALI-GAHTCG 163
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 98 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231
+++ F++ ++DR++V L G H +G T ++ Y PGG ++ EF L
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHALGKTH---LKNSGYE-GPGGAANNVFTNEFYLNL 206
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 98 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231
+++ F++ ++DR++V L G H +G T ++ Y PGG ++ EF L
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHALGKTH---LKNSGYE-GPGGAANNVFTNEFYLNL 206
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 43 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 99
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 100 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 154
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231
+++ F++ ++DR++V L G H +G T ++ Y PGG ++ EF L
Sbjct: 155 YVRTFFQRLNMNDREVVALM-GAHALGKTH---LKNSGYE-GPGGAANNVFTNEFYLNL 208
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231
+++ F++ ++DR++V L G H +G T ++ Y PGG ++ EF L
Sbjct: 150 YVRTFFQRLNMNDREVVALM-GAHALGKTH---LKNSGYE-GPGGAANNVFTNEFYLNL 203
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 39 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 95
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 96 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 150
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231
+++ F++ ++DR++V L G H +G T ++ Y PGG ++ EF L
Sbjct: 151 YVRTFFQRLNMNDREVVALM-GAHALGKTH---LKNSGYE-GPGGAANNVFTNEFYLNL 204
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 98 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231
+++ F++ ++DR++V L G H +G T ++ Y PGG ++ EF L
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHALGKTH---LKNSGYE-GPGGAANNVFTNEFYLNL 206
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I G D+ +L V ++GP GR D + LP++D
Sbjct: 98 EFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDMDKDAG 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 150 YVRTFFQRLNMNDREVVALK-GAHALGKT 177
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 43 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 99
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 100 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 154
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 155 YVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I G D+ +L V ++GP GR D +
Sbjct: 81 GFKFLEPIHKEFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 135
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 136 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 173
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 87 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 141
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 142 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 179
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 43 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 99
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 100 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 154
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 155 YVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 43 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 99
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 100 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 154
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 155 YVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 44 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 100
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 101 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 155
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 156 YVRTFFQRLNMNDREVVALM-GAHALGKT 183
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 43 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 99
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 100 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 154
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 155 YVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 98 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 44 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 100
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 101 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 155
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 156 YVRTFFQRLNMNDREVVALM-GAHALGKT 183
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 90 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 23/179 (12%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 44 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 100
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 101 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 155
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231
+++ F++ ++DR++V L G H +G T ++ Y GGG++ EF L
Sbjct: 156 YVRTFFQRLNMNDREVVALM-GAHALGKTH---LKNSGYE---GGGANNVFTNEFYLNL 207
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 44 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 100
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 101 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 155
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 156 YVRTFFQRLNMNDREVVALM-GAHALGKT 183
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 87 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 141
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 142 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 179
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I G D+ +L V ++GP GR D +
Sbjct: 90 GFKFLEPIHKEFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I G D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I G D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I G D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I G D+ +L V ++GP GR D + LP+ D
Sbjct: 98 EFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDYDKDAG 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 150 YVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 23/179 (12%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 39 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 95
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I G D+ +L V ++GP GR D + LP+ D
Sbjct: 96 EFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 150
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231
+++ F++ ++DR++V L G H +G T ++ Y GGG++ EF L
Sbjct: 151 YVRTFFQRLNMNDREVVALM-GAHALGKTH---LKNSGYE---GGGANNVFTNEFYLNL 202
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I G D+ +L V ++GP GR D +
Sbjct: 90 GFKFLEPIHKEFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I G D+ +L V ++GP GR D +
Sbjct: 85 GFKFLEPIHKEFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 140 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 150 YVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 150 YVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 23/179 (12%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I G D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231
+++ F++ ++DR++V L G H +G T ++ Y GGG++ EF L
Sbjct: 150 YVRTFFQRLNMNDREVVALM-GAHALGKTH---LKNSGYE---GGGANNVFTNEFYLNL 201
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 150 YVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 43 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 99
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I G D+ +L V ++GP GR D + LP+ D
Sbjct: 100 EFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 154
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 155 YVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 150 YVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 150 YVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 150 YVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 41 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 97
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 98 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 152
Query: 173 LLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
+++ F++ ++DR++V L G H +G T
Sbjct: 153 YVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V +GP GR D +
Sbjct: 90 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 39 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 95
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 96 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 150
Query: 173 LLKSKFRQKGLSDRDLVLLSGGG 195
+++ F++ ++DR++V L G G
Sbjct: 151 YVRTFFQRLNMNDREVVALMGAG 173
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 61 GSAAVLLRLQFHDCYVEGCDASILIDNGEEG-------ERKASGNLGV-GGFEIIEEAKA 112
G VL+RL +H + G G G E N G+ GF+ +E
Sbjct: 38 GYGPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHK 94
Query: 113 KLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQ 172
+ I S D+ +L V ++GP GR D + LP+ D
Sbjct: 95 EFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAG 149
Query: 173 LLKSKFRQKGLSDRDLVLLSGGG 195
+++ F++ ++DR++V L G G
Sbjct: 150 YVRTFFQRLNMNDREVVALMGAG 172
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 90 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 90 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 90 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALM-GAHALGKT 182
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 85 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 85 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALM-GAHALGKT 177
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I G D+ +L V ++GP GR D +
Sbjct: 88 GFKFLEPIHKEFPWISSG-----DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLT 201
LP+ D +++ F++ ++DR++V L G H +G T
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALM-GAHALGKT 180
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 103 GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLAD 162
GF+ +E + I S D+ +L V ++GP GR D +
Sbjct: 86 GFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 140
Query: 163 NLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGG 195
LP+ D +++ F++ ++DR++V L G G
Sbjct: 141 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAG 173
>pdb|2C3N|A Chain A, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|B Chain B, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|C Chain C, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|D Chain D, Human Glutathione-S-Transferase T1-1, Apo Form
Length = 247
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 155 VSSKSLADNLPEVDDSIQLLKSKFRQK-------GLSDRDLVLLSGGGHTIG 199
VS ++LA L E+D ++QLL+ KF Q +S DLV ++ H +G
Sbjct: 135 VSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVG 186
>pdb|2C3Q|A Chain A, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3Q|B Chain B, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3Q|C Chain C, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3Q|D Chain D, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3T|A Chain A, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|B Chain B, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|C Chain C, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|D Chain D, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
Length = 247
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 155 VSSKSLADNLPEVDDSIQLLKSKFRQK-------GLSDRDLVLLSGGGHTIG 199
VS ++LA L E+D ++QLL+ KF Q +S DLV ++ H +G
Sbjct: 135 VSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVG 186
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 27/125 (21%)
Query: 17 IYNLLAARTVSSQGQLQVGFY-SKTCPNAES-----IVSSVTQKTFERDPGSAAVLLRLQ 70
I NLL + +Q LQ+ F+ S T P + V+ K F G A ++
Sbjct: 20 IKNLL---QLEAQEHLQLDFWKSPTTPGETAHVRVPFVNVQAVKVFLESQGIAYSIM--- 73
Query: 71 FHDCYVEGCDASILIDNGEEG-----ERKASGNLGVGGFEIIEEAKAKLEGIC---PGVV 122
+E D +L+D E R+ SGN G + +EE +++ + PG+V
Sbjct: 74 -----IE--DVQVLLDKENEEMLFNRRRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLV 126
Query: 123 SCADI 127
S +I
Sbjct: 127 SKVNI 131
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 84 LIDNGEEGERKAS-----------GNLGVGGFEIIEEAKAKLEGICPGVV--SCADIVAL 130
++DN E KA G+LGV G I K L C G+ C +
Sbjct: 127 IVDNWPENHVKAVVVTDGERILGLGDLGVYGMGI-PVGKLCLYTACAGIRPDQCLPVCID 185
Query: 131 AARDGVALVKGPFYEVPTGRRDGKVSSKSLADNL 164
D +AL+K PFY +RD L D
Sbjct: 186 VGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEF 219
>pdb|2GX8|A Chain A, The Crystal Stucture Of Bacillus Cereus Protein Related To
Nif3
pdb|2GX8|B Chain B, The Crystal Stucture Of Bacillus Cereus Protein Related To
Nif3
pdb|2GX8|C Chain C, The Crystal Stucture Of Bacillus Cereus Protein Related To
Nif3
Length = 397
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 126 DIVALAARDGVALVKGPFYEV---PTGRRDGKVSSKSLADNLPEVDDSIQLLKSKFRQKG 182
DI AA V + KG ++ G ++ +V + + A+ + +V + + ++ +K
Sbjct: 120 DIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKA 179
Query: 183 LSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAI 223
L D +G GH + C F F P G++P I
Sbjct: 180 LGD------AGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYI 214
>pdb|3BPO|A Chain A, Crystal Structure Of The Il13-Il4r-Il13ra Ternary Complex
Length = 127
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 99 LGVGGFEIIEEAKAKLEGICPGVVSCADIVALAARD 134
+ V G IE+ + L G CP VS +L RD
Sbjct: 53 INVSGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRD 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,457,054
Number of Sequences: 62578
Number of extensions: 389091
Number of successful extensions: 921
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 120
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)