Query 019638
Match_columns 338
No_of_seqs 186 out of 1493
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 3E-107 6E-112 784.9 26.2 305 26-338 19-324 (324)
2 cd00693 secretory_peroxidase H 100.0 8E-100 2E-104 729.9 25.1 296 31-337 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.9E-71 4.1E-76 516.3 10.4 228 48-292 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 3E-68 6.4E-73 507.2 20.8 230 46-334 15-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 7.5E-65 1.6E-69 477.8 19.0 226 43-323 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 5.3E-64 1.1E-68 470.9 19.4 231 34-323 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 4.4E-63 9.6E-68 479.2 21.0 236 44-338 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 5.1E-62 1.1E-66 457.1 19.6 219 46-323 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 9.3E-59 2E-63 436.0 17.9 223 47-319 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.2E-55 2.5E-60 434.5 17.3 267 37-328 35-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.8E-53 3.8E-58 442.3 18.8 263 37-324 45-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 7.4E-50 1.6E-54 413.4 18.2 264 37-325 47-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 3.7E-50 8E-55 377.3 11.3 220 48-319 27-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 5.3E-39 1.2E-43 305.4 16.9 219 50-321 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 7.6E-34 1.6E-38 295.9 16.9 221 47-321 429-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.9E-33 4.2E-38 291.6 17.5 219 50-321 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 7.7E-30 1.7E-34 254.8 16.2 249 47-320 71-415 (730)
18 COG0376 KatG Catalase (peroxid 99.5 1.5E-13 3.2E-18 138.7 13.1 218 50-321 452-725 (730)
19 PTZ00411 transaldolase-like pr 55.1 1.3E+02 0.0027 30.1 10.5 47 139-185 180-230 (333)
20 PF11895 DUF3415: Domain of un 44.8 18 0.0004 28.7 2.3 19 305-323 2-20 (80)
21 PF07172 GRP: Glycine rich pro 41.6 19 0.00041 29.4 2.0 20 6-25 3-22 (95)
22 COG3763 Uncharacterized protei 39.0 48 0.001 25.8 3.7 29 47-75 24-52 (71)
23 PRK01844 hypothetical protein; 34.3 82 0.0018 24.6 4.3 29 47-75 24-52 (72)
24 PRK00523 hypothetical protein; 27.4 76 0.0017 24.8 3.1 29 47-75 25-53 (72)
25 PRK05269 transaldolase B; Prov 24.8 2.9E+02 0.0063 27.3 7.5 49 139-187 170-222 (318)
26 COG3652 Predicted outer membra 22.0 1.2E+02 0.0027 27.3 3.8 46 252-317 109-154 (170)
27 PF06459 RR_TM4-6: Ryanodine R 21.9 50 0.0011 32.0 1.5 21 3-23 169-189 (274)
28 PF12276 DUF3617: Protein of u 21.2 74 0.0016 27.4 2.3 34 7-40 1-35 (162)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.7e-107 Score=784.89 Aligned_cols=305 Identities=51% Similarity=0.871 Sum_probs=286.2
Q ss_pred cccccccCccccccCCccHHHHHHHHHHHHHhhCCCchhhHHHHHhhcccccCCCcceecCCCCcccccCCCCCCCchHH
Q 019638 26 VSSQGQLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNGEEGERKASGNLGVGGFE 105 (338)
Q Consensus 26 ~~~~~~l~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~aa~lLRL~FHDCfv~GcDgSiLL~~~~~~E~~~~~N~~L~g~~ 105 (338)
..+.++|+++||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||+++ ..||++++|.+|+||+
T Consensus 19 ~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~-~~Ek~a~~N~~l~Gf~ 97 (324)
T PLN03030 19 LVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS-NTEKTALPNLLLRGYD 97 (324)
T ss_pred cchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC-cccccCCCCcCcchHH
Confidence 444567999999999999999999999999999999999999999999999999999999864 4799999999999999
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCccccCCCCCCCCcHHHHHHHHHHCCCCc
Q 019638 106 IIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKFRQKGLSD 185 (338)
Q Consensus 106 ~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~ 185 (338)
+|+.||+.+|++||++|||||||++||||||+++|||.|+|++||||+++|...++.+||.|+.++++|++.|+++||+.
T Consensus 98 ~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 98 VIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999877666789999999999999999999999
Q ss_pred cccchhcccccccccccccccccccccCCCCC-CCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHHhh
Q 019638 186 RDLVLLSGGGHTIGLTACFFMQVRLYNFTPGG-GSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIK 264 (338)
Q Consensus 186 ~dlVaLs~GaHTiG~ahc~~f~~Rl~~~~g~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~ 264 (338)
+|||+|| ||||||++||.+|.+|||||++++ .+||+|||.|+.+|++.||..+++++.+++|+.||.+|||+||+||+
T Consensus 178 ~DlVaLs-GAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll 256 (324)
T PLN03030 178 QDLVTLV-GGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLK 256 (324)
T ss_pred HHheeee-eccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHH
Confidence 9999999 999999999999999999999875 58999999999999999996444445788999999999999999999
Q ss_pred cCcccccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCCCcccccCccCC
Q 019638 265 NGFAVIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGNLGVKTGSEGEIRRVCAAVN 338 (338)
Q Consensus 265 ~~~glL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~n 338 (338)
+++|+|+|||+|++|++|+++|++||.|+. ..++.|+++|++||+|||+|+|+||.+||||++|+++|
T Consensus 257 ~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~------~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 257 NGRGILESDQKLWTDASTRTFVQRFLGVRG------LAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred hcCCCcCCchHhhcCccHHHHHHHHhcccc------cchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 999999999999999999999999998750 00159999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7.9e-100 Score=729.88 Aligned_cols=296 Identities=53% Similarity=0.876 Sum_probs=285.9
Q ss_pred ccCccccccCCccHHHHHHHHHHHHHhhCCCchhhHHHHHhhcccccCCCcceecCCC--CcccccCCCCCCCchHHHHH
Q 019638 31 QLQVGFYSKTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNG--EEGERKASGNLGVGGFEIIE 108 (338)
Q Consensus 31 ~l~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~aa~lLRL~FHDCfv~GcDgSiLL~~~--~~~E~~~~~N~~L~g~~~i~ 108 (338)
||+++||++|||++|+||+++|++.+.+|++++|++|||+||||||+||||||||+.+ +..|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 5999999999999999999999999999999999999999999999999999999976 56899999999999999999
Q ss_pred HHHHHHhccCCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCccccCCCCCCCCcHHHHHHHHHHCCCCcccc
Q 019638 109 EAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKFRQKGLSDRDL 188 (338)
Q Consensus 109 ~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dl 188 (338)
.||+++|++||++|||||||++|||+||+.+|||.|+|++||+|++++.+..+++||.|+.+++++++.|+++||+++||
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~ 160 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDL 160 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHh
Confidence 99999999999999999999999999999999999999999999998776544789999999999999999999999999
Q ss_pred chhcccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHHhhcCcc
Q 019638 189 VLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNGFA 268 (338)
Q Consensus 189 VaLs~GaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g 268 (338)
|||+ ||||||++||.+|.+|+|||+|++.+||+||+.|+..|++.||+.+++++.+++|+.||.+|||+||+||+.++|
T Consensus 161 VaL~-GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~g 239 (298)
T cd00693 161 VALS-GAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRG 239 (298)
T ss_pred eeec-ccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhccc
Confidence 9999 999999999999999999999999999999999999999999986656678899999999999999999999999
Q ss_pred cccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCCCcccccCccC
Q 019638 269 VIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGNLGVKTGSEGEIRRVCAAV 337 (338)
Q Consensus 269 lL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~ 337 (338)
+|+|||+|+.|++|+++|++||.|+ +.|+++|++||+||++|+|+||.+||||++|+++
T Consensus 240 lL~SD~~L~~d~~t~~~V~~~A~d~----------~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 240 LLTSDQALLSDPRTRAIVNRYAANQ----------DAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred CccCCHHhccCccHHHHHHHHhhCH----------HHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999999999999999 9999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.9e-71 Score=516.35 Aligned_cols=228 Identities=50% Similarity=0.830 Sum_probs=209.3
Q ss_pred HHHHHHHHHhhCCCchhhHHHHHhhcccc-cCCCcceecCCCCcccccCCCCCCCc-hHHHHHHHHHHHhccCCCcccHH
Q 019638 48 VSSVTQKTFERDPGSAAVLLRLQFHDCYV-EGCDASILIDNGEEGERKASGNLGVG-GFEIIEEAKAKLEGICPGVVSCA 125 (338)
Q Consensus 48 V~~~v~~~~~~d~~~aa~lLRL~FHDCfv-~GcDgSiLL~~~~~~E~~~~~N~~L~-g~~~i~~iK~~le~~cp~~VScA 125 (338)
||++|+++++++++++|+||||+|||||+ +|||||||+. ..|+++++|.+|+ ++++|+.||+++|++||++||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~---~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~A 77 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF---SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCA 77 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS---TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc---ccccccccccCcceeeechhhHHhhhcccccCCCCHH
Confidence 79999999999999999999999999999 9999999994 4799999999998 99999999999999999999999
Q ss_pred HHHHHhhhchhcccCCCcccccCCCCCCCCCCccccCCCCCCCCcHHHHHHHHHHCCCCccccchhcccccccccccccc
Q 019638 126 DIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFF 205 (338)
Q Consensus 126 DilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs~GaHTiG~ahc~~ 205 (338)
|||++||++||+.+|||.|+|++||+|++++...++.+||.|+.+++++++.|+++|||++|||||+ ||||||++||.+
T Consensus 78 DiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLs-GaHTiG~~~c~~ 156 (230)
T PF00141_consen 78 DIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALS-GAHTIGRAHCSS 156 (230)
T ss_dssp HHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHH-GGGGSTEESGGC
T ss_pred HHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhccee-cccccccceecc
Confidence 9999999999999999999999999999999886434699999999999999999999999999999 999999999999
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHHhhcCcccccchhhccCChhHHHH
Q 019638 206 MQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNGFAVIASDARLYDDENTKRI 285 (338)
Q Consensus 206 f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~ 285 (338)
|. |+| + .+||+||+.|+.+ .| ..++++ .+++| ||.+|||+||++|++++|+|+||++|++|++|+++
T Consensus 157 f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~ 223 (230)
T PF00141_consen 157 FS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPI 223 (230)
T ss_dssp TG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHH
T ss_pred cc-ccc-c----cccccccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHH
Confidence 99 999 4 5799999999988 99 433333 78888 99999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 019638 286 LESYVSS 292 (338)
Q Consensus 286 V~~yA~d 292 (338)
|++||+|
T Consensus 224 V~~yA~d 230 (230)
T PF00141_consen 224 VERYAQD 230 (230)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3e-68 Score=507.17 Aligned_cols=230 Identities=27% Similarity=0.434 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHhhCCCchhhHHHHHhhccc-------ccCCCcceecCCCCcccccCCCCCCC-chHHHHHHHHHHHhcc
Q 019638 46 SIVSSVTQKTFERDPGSAAVLLRLQFHDCY-------VEGCDASILIDNGEEGERKASGNLGV-GGFEIIEEAKAKLEGI 117 (338)
Q Consensus 46 ~iV~~~v~~~~~~d~~~aa~lLRL~FHDCf-------v~GcDgSiLL~~~~~~E~~~~~N~~L-~g~~~i~~iK~~le~~ 117 (338)
+.+++++ ..+.+||+++|.+|||+||||| ++||||||+++ .|+++++|.|| ++|++|+.||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~----~E~~~~~N~gL~~g~~vid~iK~~~--- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE----EEYSHGANNGLKIAIDLCEPVKAKH--- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc----cccCCccccchHHHHHHHHHHHHHc---
Confidence 4566777 4477899999999999999999 99999999985 69999999999 5999999999987
Q ss_pred CCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCccccCCCCCCCCcHHHHHHHHHHCCCCccccchhcccccc
Q 019638 118 CPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHT 197 (338)
Q Consensus 118 cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs~GaHT 197 (338)
++|||||||++|||+||+.+|||.|+|++||+|++++.+. ++||.|+.+++++++.|+++||+++|||+|+ ||||
T Consensus 87 --~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLs-GAHT 161 (289)
T PLN02608 87 --PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEE--GRLPDAKKGAKHLRDVFYRMGLSDKDIVALS-GGHT 161 (289)
T ss_pred --CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCcc--CCCcCCCCCHHHHHHHHHHcCCCHHHHhhhc-cccc
Confidence 4899999999999999999999999999999999998754 7899999999999999999999999999999 9999
Q ss_pred cccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHHhhcC--ccc--ccch
Q 019638 198 IGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNG--FAV--IASD 273 (338)
Q Consensus 198 iG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl--L~SD 273 (338)
||++||. |+ +|.| | . ..||.+|||+||+||+++ +|+ |+||
T Consensus 162 iG~ahc~----r~-g~~g--------------------~----------~-~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD 205 (289)
T PLN02608 162 LGRAHPE----RS-GFDG--------------------P----------W-TKEPLKFDNSYFVELLKGESEGLLKLPTD 205 (289)
T ss_pred ccccccc----CC-CCCC--------------------C----------C-CCCCCccChHHHHHHHcCCcCCccccccC
Confidence 9999995 54 3321 0 1 269999999999999999 788 7999
Q ss_pred hhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCCCcccccC
Q 019638 274 ARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGNLGVKTGSEGEIRRVC 334 (338)
Q Consensus 274 ~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C 334 (338)
|+|+.|++|+++|+.||.|+ +.|+++|++||+||++|+|+||.+||+.+.-
T Consensus 206 ~~L~~d~~T~~~V~~fA~~~----------~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 206 KALLEDPEFRPYVELYAKDE----------DAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred HhhhcChhHHHHHHHHhhCH----------HHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 99999999999999999999 9999999999999999999999999998753
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=7.5e-65 Score=477.83 Aligned_cols=226 Identities=24% Similarity=0.353 Sum_probs=204.9
Q ss_pred cHHHHHHHHHHHHHhhCCCchhhHHHHHhhcccccCCCcceecCCC-----CcccccCCCCCCC-chHHHHHHHHHHHhc
Q 019638 43 NAESIVSSVTQKTFERDPGSAAVLLRLQFHDCYVEGCDASILIDNG-----EEGERKASGNLGV-GGFEIIEEAKAKLEG 116 (338)
Q Consensus 43 ~~e~iV~~~v~~~~~~d~~~aa~lLRL~FHDCfv~GcDgSiLL~~~-----~~~E~~~~~N~~L-~g~~~i~~iK~~le~ 116 (338)
..++||+++|++.++ +++++|++|||+|||||+ ||+|++++.. +.+|+++++|.+| ++|++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 999999999999999994 6666666422 2469999999999 8999999999987
Q ss_pred cCCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCcccc-CCCCCCCCcHHHHHHHHHHCCCCccccchhcccc
Q 019638 117 ICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLA-DNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGG 195 (338)
Q Consensus 117 ~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs~Ga 195 (338)
| +|||||||++|||+||+.+|||.|+|++||+|++++....+ .+||.|+.+++++++.|+++||+++|||+|+ ||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLs-Ga 161 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALS-GA 161 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhc-cc
Confidence 4 89999999999999999999999999999999999987666 8899999999999999999999999999999 99
Q ss_pred cccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHHhhcCcc-------
Q 019638 196 HTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNGFA------- 268 (338)
Q Consensus 196 HTiG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g------- 268 (338)
||||++||.. ++|.| + |..||.+|||+||+||+.++|
T Consensus 162 HTiG~a~c~~-----~~~~g---~----------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~~ 205 (253)
T cd00691 162 HTLGRCHKER-----SGYDG---P----------------------------WTKNPLKFDNSYFKELLEEDWKLPTPGL 205 (253)
T ss_pred ceeecccccC-----CCCCC---C----------------------------CCCCCCcccHHHHHHHhcCCCccCcCcc
Confidence 9999999953 23322 1 125999999999999999999
Q ss_pred -cccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 019638 269 -VIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGNLGVK 323 (338)
Q Consensus 269 -lL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~lgv~ 323 (338)
+|+||++|+.|++|+++|+.||.|+ +.|+++|++||+||++|+|.
T Consensus 206 ~~L~sD~~L~~d~~t~~~v~~~a~~~----------~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 206 LMLPTDKALLEDPKFRPYVELYAKDQ----------DAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred eechhhHHHHcCccHHHHHHHHhhCH----------HHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999 99999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=5.3e-64 Score=470.93 Aligned_cols=231 Identities=26% Similarity=0.445 Sum_probs=207.7
Q ss_pred ccccc--cCCccHHHHHHHHHHHHHhhCCCchhhHHHHHhh-----ccccc--CCCcceecCCCCcccccCCCCCCC-ch
Q 019638 34 VGFYS--KTCPNAESIVSSVTQKTFERDPGSAAVLLRLQFH-----DCYVE--GCDASILIDNGEEGERKASGNLGV-GG 103 (338)
Q Consensus 34 ~~fY~--~sCP~~e~iV~~~v~~~~~~d~~~aa~lLRL~FH-----DCfv~--GcDgSiLL~~~~~~E~~~~~N~~L-~g 103 (338)
.+||. +-|+.+++.++..+++.+ .+++++|.+|||+|| ||+++ ||||||..+ .|+++++|.+| ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~----~E~~~~~N~gl~~~ 77 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD----AEQAHGANSGIHIA 77 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc----ccccCCCccCHHHH
Confidence 35665 347888899999999988 789999999999999 88876 999999653 79999999999 79
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCccccCCCCCCCCcHHHHHHHHHH-CC
Q 019638 104 FEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKFRQ-KG 182 (338)
Q Consensus 104 ~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~-~G 182 (338)
|++|+.||+++ ++|||||||+||||+||+.+|||.|+|++||+|++++.+. ++||.|+.++++|++.|++ +|
T Consensus 78 ~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~lP~p~~~~~~l~~~F~~~~G 150 (250)
T PLN02364 78 LRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPE--GRLPDATKGCDHLRDVFAKQMG 150 (250)
T ss_pred HHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccccc--CCCCCCCcCHHHHHHHHHHhcC
Confidence 99999999998 4899999999999999999999999999999999998765 7899999999999999997 69
Q ss_pred CCccccchhcccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHH
Q 019638 183 LSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLN 262 (338)
Q Consensus 183 ls~~dlVaLs~GaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~ 262 (338)
|+++|||||+ ||||||++|| .|+ +|.| + + +.||.+|||+||++
T Consensus 151 l~~~d~VaLs-GaHTiG~~hc----~r~-~~~g--------------------~----------~-~~tp~~fDn~Yy~~ 193 (250)
T PLN02364 151 LSDKDIVALS-GAHTLGRCHK----DRS-GFEG--------------------A----------W-TSNPLIFDNSYFKE 193 (250)
T ss_pred CCHHHheeee-cceeeccccC----CCC-CCCC--------------------C----------C-CCCCCccchHHHHH
Confidence 9999999999 9999999999 344 3221 0 1 26899999999999
Q ss_pred hhcC--ccccc--chhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 019638 263 IKNG--FAVIA--SDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGNLGVK 323 (338)
Q Consensus 263 l~~~--~glL~--SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~lgv~ 323 (338)
|+.+ +|+|. |||.|+.|++|+.+|+.||.|+ +.|+++|++||+||++||+-
T Consensus 194 ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~----------~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 194 LLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADE----------DAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HhcCCcCCCccccchHHHccCchHHHHHHHHhhCH----------HHHHHHHHHHHHHHHccCCC
Confidence 9999 89876 9999999999999999999999 99999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.4e-63 Score=479.18 Aligned_cols=236 Identities=29% Similarity=0.371 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHhhCCC---chhhHHHHHhhcccc------------cCCCcceecCCCCcccccCCCCCCCchHHHHH
Q 019638 44 AESIVSSVTQKTFERDPG---SAAVLLRLQFHDCYV------------EGCDASILIDNGEEGERKASGNLGVGGFEIIE 108 (338)
Q Consensus 44 ~e~iV~~~v~~~~~~d~~---~aa~lLRL~FHDCfv------------~GcDgSiLL~~~~~~E~~~~~N~~L~g~~~i~ 108 (338)
+|..|++++++.+..+.. .|+.+|||+||||++ +|||||||++.+ .|+++++|.||+ ++|+
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~--~E~~~~~N~gL~--~vvd 91 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD--IETAFHANIGLD--EIVE 91 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc--ccccCCCCCCHH--HHHH
Confidence 477899999999986544 577799999999996 899999999853 799999999998 9999
Q ss_pred HHHHHHhccCCCcccHHHHHHHhhhchhcc-cCCCcccccCCCCCCCCCCccccCCCCCCCCcHHHHHHHHHHCCCCccc
Q 019638 109 EAKAKLEGICPGVVSCADIVALAARDGVAL-VKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKFRQKGLSDRD 187 (338)
Q Consensus 109 ~iK~~le~~cp~~VScADilalAar~av~~-~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d 187 (338)
.+|..+|++| |||||||+||||+||+. .|||.|+|++||+|++++.+. ++||.|+.++++|++.|+++||+.+|
T Consensus 92 ~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~--g~LP~p~~sv~~l~~~F~~~Gf~~~E 166 (328)
T cd00692 92 ALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD--GLVPEPFDSVDKILARFADAGFSPDE 166 (328)
T ss_pred HHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 9999999998 99999999999999995 599999999999999998765 78999999999999999999999999
Q ss_pred cchhcccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHHhh-cC
Q 019638 188 LVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIK-NG 266 (338)
Q Consensus 188 lVaLs~GaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~-~~ 266 (338)
||+|+ ||||||++|. +||+++ ..++| .||.+|||+||+|++ .+
T Consensus 167 ~VaLs-GAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ll~~~ 210 (328)
T cd00692 167 LVALL-AAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIETLLKG 210 (328)
T ss_pred Hhhhc-ccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHHHHcC
Confidence 99999 9999999982 467664 14677 599999999999987 55
Q ss_pred cc-------------------cccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q 019638 267 FA-------------------VIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGNLGVKTGSE 327 (338)
Q Consensus 267 ~g-------------------lL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~lgv~tg~~ 327 (338)
++ +|+||++|+.|++|+.+|++||.|| +.|+++|++||+||++|||.
T Consensus 211 ~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq----------~~f~~~Fa~Am~KLs~lgv~---- 276 (328)
T cd00692 211 TAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQ----------AKMNAAFAAAMLKLSLLGQD---- 276 (328)
T ss_pred CCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCH----------HHHHHHHHHHHHHHHcCCCC----
Confidence 55 4999999999999999999999999 99999999999999999986
Q ss_pred CcccccCccCC
Q 019638 328 GEIRRVCAAVN 338 (338)
Q Consensus 328 GeIR~~C~~~n 338 (338)
...+.+|+.|+
T Consensus 277 ~~~l~dcs~v~ 287 (328)
T cd00692 277 NISLTDCSDVI 287 (328)
T ss_pred cchhccCcccC
Confidence 33677999875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.1e-62 Score=457.15 Aligned_cols=219 Identities=26% Similarity=0.407 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhhCCCchhhHHHHHhhcccc-------cCCCcceecCCCCcccccCCCCCCCc-hHHHHHHHHHHHhcc
Q 019638 46 SIVSSVTQKTFERDPGSAAVLLRLQFHDCYV-------EGCDASILIDNGEEGERKASGNLGVG-GFEIIEEAKAKLEGI 117 (338)
Q Consensus 46 ~iV~~~v~~~~~~d~~~aa~lLRL~FHDCfv-------~GcDgSiLL~~~~~~E~~~~~N~~L~-g~~~i~~iK~~le~~ 117 (338)
+-++..+.+.+ .+...+|.+|||+||||.+ |||||||++. .|+++++|.||+ ++++|++||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~----~E~~~~~N~gL~~~~~~i~~iK~~~--- 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP----QELAHDANNGLDIAVRLLDPIKELF--- 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh----hhccCCCcCChHHHHHHHHHHHHHc---
Confidence 34567777766 4579999999999999974 9999999863 699999999998 999999999998
Q ss_pred CCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCccccCCCCCCCCcHHHHHHHHHHCCCCccccchhcccccc
Q 019638 118 CPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHT 197 (338)
Q Consensus 118 cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs~GaHT 197 (338)
++|||||||+||||+||+.+|||.|+|++||+|++++.+. ++||.|+.++++|++.|+++||+++|||||+ ||||
T Consensus 90 --~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~--~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALs-GaHT 164 (251)
T PLN02879 90 --PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPE--GRLPQATKGVDHLRDVFGRMGLNDKDIVALS-GGHT 164 (251)
T ss_pred --CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCHHHHeeee-cccc
Confidence 4899999999999999999999999999999999988654 7899999999999999999999999999999 9999
Q ss_pred cccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHHhhcC--ccc--ccch
Q 019638 198 IGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNG--FAV--IASD 273 (338)
Q Consensus 198 iG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl--L~SD 273 (338)
||++||. | ++|.| .+| .||.+|||+||++|+.+ +|+ |+||
T Consensus 165 iG~ah~~----r-~g~~g------------------------------~~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD 208 (251)
T PLN02879 165 LGRCHKE----R-SGFEG------------------------------AWT-PNPLIFDNSYFKEILSGEKEGLLQLPTD 208 (251)
T ss_pred ccccccc----c-ccCCC------------------------------CCC-CCccceeHHHHHHHHcCCcCCCccchhh
Confidence 9999995 3 23321 022 58999999999999999 898 6799
Q ss_pred hhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 019638 274 ARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGNLGVK 323 (338)
Q Consensus 274 ~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~lgv~ 323 (338)
++|+.|++|+++|++||.|| +.|+++|++||+||++||+.
T Consensus 209 ~aL~~D~~t~~~V~~~A~d~----------~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 209 KALLDDPLFLPFVEKYAADE----------DAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHhcCCcHHHHHHHHhhCH----------HHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999 99999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=9.3e-59 Score=435.99 Aligned_cols=223 Identities=32% Similarity=0.436 Sum_probs=206.2
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHHhhccccc--------CCCcceecCCCCcccccCCCCCCC-chHHHHHHHHHHHhcc
Q 019638 47 IVSSVTQKTFERDPGSAAVLLRLQFHDCYVE--------GCDASILIDNGEEGERKASGNLGV-GGFEIIEEAKAKLEGI 117 (338)
Q Consensus 47 iV~~~v~~~~~~d~~~aa~lLRL~FHDCfv~--------GcDgSiLL~~~~~~E~~~~~N~~L-~g~~~i~~iK~~le~~ 117 (338)
.|++.|++.+.+++++++++|||+||||++. ||||||+++ .|+++++|.+| +++++|+.||.++|.
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~----~e~~~~~N~~l~~~~~~l~~ik~~~~~- 76 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE----PELDRPENGGLDKALRALEPIKSAYDG- 76 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc----ccccCcccccHHHHHHHHHHHHHHcCC-
Confidence 5889999999999999999999999999996 999999997 49999999997 899999999999998
Q ss_pred CCCcccHHHHHHHhhhchhccc--CCCcccccCCCCCCCCCC--cccc-CCCCCCCCcHHHHHHHHHHCCCCccccchhc
Q 019638 118 CPGVVSCADIVALAARDGVALV--KGPFYEVPTGRRDGKVSS--KSLA-DNLPEVDDSIQLLKSKFRQKGLSDRDLVLLS 192 (338)
Q Consensus 118 cp~~VScADilalAar~av~~~--GGP~~~v~~GR~D~~~s~--~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs 192 (338)
|++|||||||++|+++||+.+ |||.|+|++||+|++.+. ...+ ..+|.|+.+++++++.|+++||+++|||||+
T Consensus 77 -~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~ 155 (255)
T cd00314 77 -GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALS 155 (255)
T ss_pred -CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhc
Confidence 899999999999999999999 999999999999999663 2233 7789999999999999999999999999999
Q ss_pred cccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHHhhcCc----
Q 019638 193 GGGHTI-GLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNGF---- 267 (338)
Q Consensus 193 ~GaHTi-G~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~---- 267 (338)
+||||| |++||..+..|+ | .+|+.||.+|||+||++|+.++
T Consensus 156 ~GaHti~G~~~~~~~~~~~------------------------~----------~~~~~tp~~fDN~yy~~l~~~~~~~~ 201 (255)
T cd00314 156 AGAHTLGGKNHGDLLNYEG------------------------S----------GLWTSTPFTFDNAYFKNLLDMNWEWR 201 (255)
T ss_pred cCCeeccCcccCCCCCccc------------------------C----------CCCCCCCCccchHHHHHHhcCCcccc
Confidence 999999 999998777664 2 1346899999999999999998
Q ss_pred ------------ccccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhc
Q 019638 268 ------------AVIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGN 319 (338)
Q Consensus 268 ------------glL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~ 319 (338)
++|+||+.|+.|++|+.+|+.||.|+ +.|+++|++||+||++
T Consensus 202 ~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~----------~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 202 VGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQ----------EKFFEDFAKAWIKMVN 255 (255)
T ss_pred cCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCH----------HHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999 9999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.2e-55 Score=434.45 Aligned_cols=267 Identities=18% Similarity=0.219 Sum_probs=232.6
Q ss_pred cccCCccH-HHHHHHHHHHHHhhC--------CCchhhHHHHHhhcccc-------cCCC-cceecCCCCcccccCCCCC
Q 019638 37 YSKTCPNA-ESIVSSVTQKTFERD--------PGSAAVLLRLQFHDCYV-------EGCD-ASILIDNGEEGERKASGNL 99 (338)
Q Consensus 37 Y~~sCP~~-e~iV~~~v~~~~~~d--------~~~aa~lLRL~FHDCfv-------~GcD-gSiLL~~~~~~E~~~~~N~ 99 (338)
|.+.+-.+ .+.|++.|++.+... ...+|.+|||+|||+.+ ||++ |+|.+. +|++++.|.
T Consensus 35 ~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~----pe~~~~~N~ 110 (409)
T cd00649 35 YAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA----PLNSWPDNV 110 (409)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc----cccCcHhhh
Confidence 34444333 368999999999864 37999999999999985 8997 889885 799999999
Q ss_pred CCc-hHHHHHHHHHHHhccCCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCc--------------------
Q 019638 100 GVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSK-------------------- 158 (338)
Q Consensus 100 ~L~-g~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~-------------------- 158 (338)
+|. +..+++.||+++ |..||+||+|+||+.+|||.+|||.|++.+||.|...+..
T Consensus 111 gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~ 186 (409)
T cd00649 111 NLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDR 186 (409)
T ss_pred hHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccch
Confidence 994 889999999998 4469999999999999999999999999999999976432
Q ss_pred ------------------cccCCCCCCCCcHHHHHHHHHHCCCCccccchhcccccccccccccccccccccCCCCCCCC
Q 019638 159 ------------------SLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSD 220 (338)
Q Consensus 159 ------------------~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs~GaHTiG~ahc~~f~~Rl~~~~g~~~~d 220 (338)
+++..||+|..++.+|++.|.+|||+.+|||||++||||||++||..|.+||. +|
T Consensus 187 ~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~d 259 (409)
T cd00649 187 DLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PE 259 (409)
T ss_pred hhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CC
Confidence 21237999999999999999999999999999933999999999999999982 69
Q ss_pred CCCCHHHHHHHH--hcCCCCC-CCCCCCCCC---CCCccccchHHHHHhhc-----------------------------
Q 019638 221 PAINPEFLKQLK--SKCPFQG-DPNTRIPLD---PVTDFIFDDQIFLNIKN----------------------------- 265 (338)
Q Consensus 221 p~~~~~~~~~L~--~~Cp~~~-~~~~~~~lD---~~Tp~~FDN~Yy~~l~~----------------------------- 265 (338)
|.+++.|+..|+ ++||... +++..+.+| +.||++|||+||++|++
T Consensus 260 P~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~ 339 (409)
T cd00649 260 PEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDA 339 (409)
T ss_pred CCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCc
Confidence 999999999995 8999643 234456788 58999999999999998
Q ss_pred -------CcccccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHH--hcCCCCCCCCC
Q 019638 266 -------GFAVIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKM--GNLGVKTGSEG 328 (338)
Q Consensus 266 -------~~glL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km--~~lgv~tg~~G 328 (338)
++++|+||++|+.|++++++|++||+|+ +.||++|++||+|| +.+||++---|
T Consensus 340 ~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~----------~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 340 HDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENP----------DEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cccccccCcccchhhHhhhcCccHHHHHHHHhcCH----------HHHHHHHHHHHHHHccccCCchhhhcC
Confidence 5689999999999999999999999999 99999999999999 69999886544
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.8e-53 Score=442.29 Aligned_cols=263 Identities=20% Similarity=0.245 Sum_probs=227.9
Q ss_pred cccCCccH-HHHHHHHHHHHHhhC--------CCchhhHHHHHhhcccc-------cCC-CcceecCCCCcccccCCCCC
Q 019638 37 YSKTCPNA-ESIVSSVTQKTFERD--------PGSAAVLLRLQFHDCYV-------EGC-DASILIDNGEEGERKASGNL 99 (338)
Q Consensus 37 Y~~sCP~~-e~iV~~~v~~~~~~d--------~~~aa~lLRL~FHDCfv-------~Gc-DgSiLL~~~~~~E~~~~~N~ 99 (338)
|.+.+-.+ .+.|++++++.+... ...+|-+|||+||++.+ ||| .|+|.+. +|++++.|.
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~----P~~sw~~N~ 120 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA----PLNSWPDNV 120 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc----cccCchhhh
Confidence 44444333 356999999999864 36899999999999986 898 4889885 799999999
Q ss_pred CCc-hHHHHHHHHHHHhccCCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCC---------------------
Q 019638 100 GVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSS--------------------- 157 (338)
Q Consensus 100 ~L~-g~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~--------------------- 157 (338)
+|. +..+++.||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 121 ~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~ 196 (716)
T TIGR00198 121 NLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRES 196 (716)
T ss_pred hHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhcccccccc
Confidence 994 88999999875 6889999999999999999999999999999999995332
Q ss_pred ----------------ccccCCCCCCCCcHHHHHHHHHHCCCCccccchhcccccccccccccccccccccCCCCCCCCC
Q 019638 158 ----------------KSLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDP 221 (338)
Q Consensus 158 ----------------~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs~GaHTiG~ahc~~f~~Rl~~~~g~~~~dp 221 (338)
++.+..+|.|..++.+|++.|++||||.+|||||++||||||++||.+|.+|| ++||
T Consensus 197 l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP 269 (716)
T TIGR00198 197 LENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDP 269 (716)
T ss_pred ccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCC
Confidence 12223799999999999999999999999999996699999999999999998 3899
Q ss_pred CCCHHHHHHHHhcCCCC---CCCCCCCCCC---CCCccccchHHHHHhhcC-----------------------------
Q 019638 222 AINPEFLKQLKSKCPFQ---GDPNTRIPLD---PVTDFIFDDQIFLNIKNG----------------------------- 266 (338)
Q Consensus 222 ~~~~~~~~~L~~~Cp~~---~~~~~~~~lD---~~Tp~~FDN~Yy~~l~~~----------------------------- 266 (338)
+++|.|++.|+.+||.. ++++.++.+| +.||++|||+||+||+++
T Consensus 270 ~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~ 349 (716)
T TIGR00198 270 EGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDP 349 (716)
T ss_pred CcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccccccccccccc
Confidence 99999999999999853 2233356787 689999999999999975
Q ss_pred -----cccccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHh--cCCCCC
Q 019638 267 -----FAVIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMG--NLGVKT 324 (338)
Q Consensus 267 -----~glL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~--~lgv~t 324 (338)
.++|+||++|..|++++++|+.||.|+ +.|+++|++||+||+ .+|++.
T Consensus 350 ~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~----------~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 350 NKKHNPIMLDADLALRFDPEFRKISRRFLREP----------DYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred ccccccCccchhHHhccCccHHHHHHHHhcCH----------HHHHHHHHHHHHHHcccccCchh
Confidence 689999999999999999999999999 999999999999998 466654
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=7.4e-50 Score=413.40 Aligned_cols=264 Identities=18% Similarity=0.236 Sum_probs=227.9
Q ss_pred cccCCccH-HHHHHHHHHHHHhhC--------CCchhhHHHHHhhcccc-------cCCC-cceecCCCCcccccCCCCC
Q 019638 37 YSKTCPNA-ESIVSSVTQKTFERD--------PGSAAVLLRLQFHDCYV-------EGCD-ASILIDNGEEGERKASGNL 99 (338)
Q Consensus 37 Y~~sCP~~-e~iV~~~v~~~~~~d--------~~~aa~lLRL~FHDCfv-------~GcD-gSiLL~~~~~~E~~~~~N~ 99 (338)
|.+-+-.. .+.|++++++.+... ...+|-+|||+||++.+ |||+ |+|.+. +|++++.|.
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~----pe~~w~~N~ 122 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA----PLNSWPDNV 122 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc----ccccchhhh
Confidence 34444333 357999999998864 37899999999999985 8996 788875 799999999
Q ss_pred CCc-hHHHHHHHHHHHhccCCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCc--------------------
Q 019638 100 GVG-GFEIIEEAKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSK-------------------- 158 (338)
Q Consensus 100 ~L~-g~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~-------------------- 158 (338)
+|. +..++++||+++ |..||+||+|+||+.+|||.+|||.|++.+||.|...+..
T Consensus 123 gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~ 198 (726)
T PRK15061 123 NLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGE 198 (726)
T ss_pred hHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccc
Confidence 994 889999999998 4579999999999999999999999999999999865432
Q ss_pred -------------------cccCCCCCCCCcHHHHHHHHHHCCCCccccchhcccccccccccccccccccccCCCCCCC
Q 019638 159 -------------------SLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGS 219 (338)
Q Consensus 159 -------------------~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs~GaHTiG~ahc~~f~~Rl~~~~g~~~~ 219 (338)
+++..+|+|..++.+|++.|.+|||+.+|||||++||||||++||..|..|| ++
T Consensus 199 ~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl-------gp 271 (726)
T PRK15061 199 RDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV-------GP 271 (726)
T ss_pred cccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------CC
Confidence 1123479999999999999999999999999995599999999999999998 37
Q ss_pred CCCCCHHHHHHHH--hcCCCC-CCCCCCCCCC---CCCccccchHHHHHhhcC---------------------------
Q 019638 220 DPAINPEFLKQLK--SKCPFQ-GDPNTRIPLD---PVTDFIFDDQIFLNIKNG--------------------------- 266 (338)
Q Consensus 220 dp~~~~~~~~~L~--~~Cp~~-~~~~~~~~lD---~~Tp~~FDN~Yy~~l~~~--------------------------- 266 (338)
||.++|.+++.|. +.||.. ++++.+..+| +.||++|||+||++|+.+
T Consensus 272 dP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd 351 (726)
T PRK15061 272 EPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPD 351 (726)
T ss_pred CCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCc
Confidence 9999999999985 999963 2334456788 689999999999999985
Q ss_pred ---------cccccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHH--hcCCCCCC
Q 019638 267 ---------FAVIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKM--GNLGVKTG 325 (338)
Q Consensus 267 ---------~glL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km--~~lgv~tg 325 (338)
.++|+||++|..|+.++++|++||.|+ +.|+++|++||+|| ..+|+++-
T Consensus 352 ~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~----------~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 352 AHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENP----------EEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred ccccccccCcccccccHHhhcCCcHHHHHHHHhcCH----------HHHHHHHHHHHHHHcccCCCchhh
Confidence 589999999999999999999999999 99999999999999 44776653
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.7e-50 Score=377.33 Aligned_cols=220 Identities=24% Similarity=0.326 Sum_probs=180.0
Q ss_pred HHHHHHHHHhhCCCchhhHHHHHhhccc-------ccCCCcceecCCCCccccc-CCCCCCCchHHHHHHHHHHHhccCC
Q 019638 48 VSSVTQKTFERDPGSAAVLLRLQFHDCY-------VEGCDASILIDNGEEGERK-ASGNLGVGGFEIIEEAKAKLEGICP 119 (338)
Q Consensus 48 V~~~v~~~~~~d~~~aa~lLRL~FHDCf-------v~GcDgSiLL~~~~~~E~~-~~~N~~L~g~~~i~~iK~~le~~cp 119 (338)
|...-..+...++++|+++|||+||||| ++||||||+++.. .+|+. .+.|.+|++|+.|+.+
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~-~~En~G~~~n~~l~~~~~i~~~--------- 96 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD-RPENIGSGFNTTLNFFVNFYSP--------- 96 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC-ChhhccCchhhccccceeeccC---------
Confidence 3333444556889999999999999999 8999999999743 46776 4556678888776543
Q ss_pred CcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCccccCCCCCCCCcHHHHHHHHHHCCCCccccchhcccccccc
Q 019638 120 GVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSKSLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIG 199 (338)
Q Consensus 120 ~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs~GaHTiG 199 (338)
+||||||||||||+||+.+|||.|+|++||+|++++.+. + ||.|+.++++|++.|+++||+++|||+|+|||||||
T Consensus 97 -~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~--g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG 172 (264)
T cd08201 97 -RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA--G-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLG 172 (264)
T ss_pred -ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc--c-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeee
Confidence 699999999999999999999999999999999988765 4 999999999999999999999999999995599999
Q ss_pred cccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchHHHHHhhcCcc----------c
Q 019638 200 LTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQIFLNIKNGFA----------V 269 (338)
Q Consensus 200 ~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g----------l 269 (338)
++||..|.++.- |. ..++...++| .||.+|||+||.+++.+.. .
T Consensus 173 ~ahc~~f~~~~~---------~g----------------~~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~ 226 (264)
T cd08201 173 GVHSEDFPEIVP---------PG----------------SVPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNT 226 (264)
T ss_pred ecccccchhhcC---------Cc----------------cccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCC
Confidence 999998887641 10 0001234566 6999999999999998742 4
Q ss_pred ccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhc
Q 019638 270 IASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGN 319 (338)
Q Consensus 270 L~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~ 319 (338)
+.||..+++...-. .++..| ++ ..|.+.++..+.||.+
T Consensus 227 ~~sd~r~f~~d~n~-t~~~l~-~~----------~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 227 TNSDLRIFSSDGNV-TMNELA-SP----------DTFQKTCADILQRMID 264 (264)
T ss_pred ccchhhheecCccH-HHHHhc-Ch----------HHHHHHHHHHHHHHhC
Confidence 78999999765433 356677 67 9999999999999964
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=5.3e-39 Score=305.44 Aligned_cols=219 Identities=17% Similarity=0.204 Sum_probs=180.8
Q ss_pred HHHHHHHhhCCCchhhHHHHHhhcccc-------cCCCcc-eecCCCCcccccCCCCCC--Cc-hHHHHHHHHHHHhcc-
Q 019638 50 SVTQKTFERDPGSAAVLLRLQFHDCYV-------EGCDAS-ILIDNGEEGERKASGNLG--VG-GFEIIEEAKAKLEGI- 117 (338)
Q Consensus 50 ~~v~~~~~~d~~~aa~lLRL~FHDCfv-------~GcDgS-iLL~~~~~~E~~~~~N~~--L~-g~~~i~~iK~~le~~- 117 (338)
+.+++.+....-.++.||||+||++.+ ||++|+ |.+. +|++++.|.+ |. .+.++++||+++...
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~----pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~ 92 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA----PQKDWEVNEPEELAKVLAVLEGIQKEFNESQ 92 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc----cccCcCccCcHHHHHHHHHHHHHHHHhcccc
Confidence 667777777778899999999999985 999999 8775 7999999998 84 889999999998421
Q ss_pred CC-CcccHHHHHHHhhhchhcccCC-----CcccccCCCCCCCCCCcccc---CCCCCCC------------CcHHHHHH
Q 019638 118 CP-GVVSCADIVALAARDGVALVKG-----PFYEVPTGRRDGKVSSKSLA---DNLPEVD------------DSIQLLKS 176 (338)
Q Consensus 118 cp-~~VScADilalAar~av~~~GG-----P~~~v~~GR~D~~~s~~~~~---~~lP~p~------------~~~~~l~~ 176 (338)
-+ ..||.||+|+||+..|||.+|| |.|++.+||.|.+....... .++|.+. ...+.|++
T Consensus 93 ~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd 172 (297)
T cd08200 93 SGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVD 172 (297)
T ss_pred cCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHH
Confidence 12 2699999999999999999999 99999999999987643321 2345432 23578999
Q ss_pred HHHHCCCCccccchhccccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCcccc
Q 019638 177 KFRQKGLSDRDLVLLSGGGH-TIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIF 255 (338)
Q Consensus 177 ~F~~~Gls~~dlVaLs~GaH-TiG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~F 255 (338)
.|.++|||++|||||+ ||| ++|..|..++ .| |+ +.+|.+|
T Consensus 173 ~f~rlglsd~EmvaL~-Gg~r~lG~~~~~s~-------~G--------------------~w-----------T~~p~~f 213 (297)
T cd08200 173 KAQLLTLTAPEMTVLV-GGLRVLGANYGGSK-------HG--------------------VF-----------TDRPGVL 213 (297)
T ss_pred HHHhCCCChHHHhhee-cchhhcccCCCCCC-------CC--------------------CC-----------cCCCCcc
Confidence 9999999999999999 887 7999884320 01 11 4689999
Q ss_pred chHHHHHhhcCc--------------------c-----cccchhhccCChhHHHHHHHHhhc--cCCCCCCCCChhHHHH
Q 019638 256 DDQIFLNIKNGF--------------------A-----VIASDARLYDDENTKRILESYVSS--AVGNSSSSGSLPSFKA 308 (338)
Q Consensus 256 DN~Yy~~l~~~~--------------------g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~~~~~~~~~~~F~~ 308 (338)
||.||+||+... | .+.+|..|..|++.|++|+.||.| + +.||+
T Consensus 214 ~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~----------~~F~~ 283 (297)
T cd08200 214 TNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQ----------EKFVK 283 (297)
T ss_pred ccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccch----------hHHHH
Confidence 999999999520 1 267899999999999999999998 7 99999
Q ss_pred HHHHHHHHHhcCC
Q 019638 309 DFAKAMVKMGNLG 321 (338)
Q Consensus 309 ~Fa~Am~Km~~lg 321 (338)
||++||.||+++.
T Consensus 284 DF~~A~~Klmeld 296 (297)
T cd08200 284 DFVAAWTKVMNLD 296 (297)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=7.6e-34 Score=295.89 Aligned_cols=221 Identities=18% Similarity=0.202 Sum_probs=176.6
Q ss_pred HHHHHHHHH---HhhCCCchhhHHHHHhhcccc-------cCCCcc-eecCCCCcccccCCCC--CCC-chHHHHHHHHH
Q 019638 47 IVSSVTQKT---FERDPGSAAVLLRLQFHDCYV-------EGCDAS-ILIDNGEEGERKASGN--LGV-GGFEIIEEAKA 112 (338)
Q Consensus 47 iV~~~v~~~---~~~d~~~aa~lLRL~FHDCfv-------~GcDgS-iLL~~~~~~E~~~~~N--~~L-~g~~~i~~iK~ 112 (338)
+|+++|+.. +....-..+.|||++||++.+ ||++|+ |.|. +|++++.| .+| +.+.+++.||+
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~----pe~~w~~N~p~gL~~vl~~Le~Ik~ 504 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE----PQKNWPVNEPTRLAKVLAVLEKIQA 504 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc----hhcCcccCCHHHHHHHHHHHHHHHH
Confidence 446666553 445556789999999999985 999999 8885 79999999 788 48999999999
Q ss_pred HHhccCCCcccHHHHHHHhhhchhccc---CCC--cccccCCCCCCCCCCccccCCC---CCC------------CCcHH
Q 019638 113 KLEGICPGVVSCADIVALAARDGVALV---KGP--FYEVPTGRRDGKVSSKSLADNL---PEV------------DDSIQ 172 (338)
Q Consensus 113 ~le~~cp~~VScADilalAar~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~l---P~p------------~~~~~ 172 (338)
++.. ..||.||+|+||+.+|||.+ ||| .|++.+||.|.+.......... |.+ .....
T Consensus 505 ~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~ 581 (716)
T TIGR00198 505 EFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEE 581 (716)
T ss_pred HcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHH
Confidence 9842 26999999999999999998 898 5788999999987653221222 211 22467
Q ss_pred HHHHHHHHCCCCccccchhcccc-cccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019638 173 LLKSKFRQKGLSDRDLVLLSGGG-HTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVT 251 (338)
Q Consensus 173 ~l~~~F~~~Gls~~dlVaLs~Ga-HTiG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~T 251 (338)
.|++.|.++|||.+|||||+ || |++|++|..++ .| | + +.+
T Consensus 582 ~l~d~a~~lglt~~EmvaL~-Gg~r~lG~~~~~s~-------~G--------------------~----------~-T~~ 622 (716)
T TIGR00198 582 LLLDKAQLLTLTAPEMTVLI-GGMRVLGANHGGSK-------HG--------------------V----------F-TDR 622 (716)
T ss_pred HHHHHHHhCCCChHHHHhee-cchhhccccCCCCC-------CC--------------------C----------C-cCC
Confidence 78999999999999999999 66 69999985321 01 1 1 358
Q ss_pred ccccchHHHHHhhcCc--------------------c---cc--cchhhccCChhHHHHHHHHhhccCCCCCCCCChhHH
Q 019638 252 DFIFDDQIFLNIKNGF--------------------A---VI--ASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSF 306 (338)
Q Consensus 252 p~~FDN~Yy~~l~~~~--------------------g---lL--~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F 306 (338)
|.+|||.||+||+... | ++ .+|..|..|++.|++|+.||+|+.. +.|
T Consensus 623 p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~--------~~F 694 (716)
T TIGR00198 623 VGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAR--------EKF 694 (716)
T ss_pred CCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhccccc--------chH
Confidence 9999999999999721 2 22 6799999999999999999999622 799
Q ss_pred HHHHHHHHHHHhcCC
Q 019638 307 KADFAKAMVKMGNLG 321 (338)
Q Consensus 307 ~~~Fa~Am~Km~~lg 321 (338)
++||++||.|+++++
T Consensus 695 ~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 695 VKDFVAAWTKVMNLD 709 (716)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.9e-33 Score=291.57 Aligned_cols=219 Identities=19% Similarity=0.224 Sum_probs=180.0
Q ss_pred HHHHHHHhhCCCchhhHHHHHhhcccc-------cCCCcc-eecCCCCcccccCCCCC--CC-chHHHHHHHHHHHhccC
Q 019638 50 SVTQKTFERDPGSAAVLLRLQFHDCYV-------EGCDAS-ILIDNGEEGERKASGNL--GV-GGFEIIEEAKAKLEGIC 118 (338)
Q Consensus 50 ~~v~~~~~~d~~~aa~lLRL~FHDCfv-------~GcDgS-iLL~~~~~~E~~~~~N~--~L-~g~~~i~~iK~~le~~c 118 (338)
..+++.+....-..+.|||++||++.+ ||++|+ |.|. +|++++.|. +| +.+.+++.||+++...-
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~----Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~ 517 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA----PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQ 517 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc----cccCccccCHHHHHHHHHHHHHHHHHHhhcc
Confidence 566666776767899999999999985 999999 8886 799999999 88 48899999999985432
Q ss_pred C--CcccHHHHHHHhhhchhccc---CC--CcccccCCCCCCCCCCcccc---CCCCCCC------------CcHHHHHH
Q 019638 119 P--GVVSCADIVALAARDGVALV---KG--PFYEVPTGRRDGKVSSKSLA---DNLPEVD------------DSIQLLKS 176 (338)
Q Consensus 119 p--~~VScADilalAar~av~~~---GG--P~~~v~~GR~D~~~s~~~~~---~~lP~p~------------~~~~~l~~ 176 (338)
. ..||.||+|+||+.+|||.+ || |.|++.+||.|.+....... .++|..+ ...+.|++
T Consensus 518 ~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d 597 (726)
T PRK15061 518 SGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVD 597 (726)
T ss_pred CCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHH
Confidence 1 25999999999999999998 68 99999999999987643321 2457543 23589999
Q ss_pred HHHHCCCCccccchhccccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCcccc
Q 019638 177 KFRQKGLSDRDLVLLSGGGH-TIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIF 255 (338)
Q Consensus 177 ~F~~~Gls~~dlVaLs~GaH-TiG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~F 255 (338)
.|.++|||.+|||||+ ||| ++|..|..++ .| |+ +.+|.+|
T Consensus 598 ~a~~lglt~~EmvaL~-Gg~r~Lg~~~~~S~-------~G--------------------~~-----------T~~p~~f 638 (726)
T PRK15061 598 KAQLLTLTAPEMTVLV-GGLRVLGANYGGSK-------HG--------------------VF-----------TDRPGVL 638 (726)
T ss_pred HHHhCCCChHHHhhee-cchhhcccCCCCCC-------CC--------------------CC-----------cCCCCcc
Confidence 9999999999999999 886 7899884321 00 11 3589999
Q ss_pred chHHHHHhhcCc--------------------c---c--ccchhhccCChhHHHHHHHHhhc--cCCCCCCCCChhHHHH
Q 019638 256 DDQIFLNIKNGF--------------------A---V--IASDARLYDDENTKRILESYVSS--AVGNSSSSGSLPSFKA 308 (338)
Q Consensus 256 DN~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~d--~~~~~~~~~~~~~F~~ 308 (338)
||.||+||+... | + +.+|..|..|++.|++|+.||+| + +.|++
T Consensus 639 sNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~----------~kF~~ 708 (726)
T PRK15061 639 TNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAK----------EKFVR 708 (726)
T ss_pred ccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccch----------hHHHH
Confidence 999999999521 1 1 47899999999999999999999 7 99999
Q ss_pred HHHHHHHHHhcCC
Q 019638 309 DFAKAMVKMGNLG 321 (338)
Q Consensus 309 ~Fa~Am~Km~~lg 321 (338)
||++||.|+++++
T Consensus 709 DF~~Aw~Kvmeld 721 (726)
T PRK15061 709 DFVAAWTKVMNLD 721 (726)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.7e-30 Score=254.80 Aligned_cols=249 Identities=18% Similarity=0.211 Sum_probs=199.2
Q ss_pred HHHHHHHHHHhhCC--------CchhhHHHHHhhcccc-------cCCCc-ceecCCCCcccccCCCCCCCc-hHHHHHH
Q 019638 47 IVSSVTQKTFERDP--------GSAAVLLRLQFHDCYV-------EGCDA-SILIDNGEEGERKASGNLGVG-GFEIIEE 109 (338)
Q Consensus 47 iV~~~v~~~~~~d~--------~~aa~lLRL~FHDCfv-------~GcDg-SiLL~~~~~~E~~~~~N~~L~-g~~~i~~ 109 (338)
.|+..+...+.... ..++-+|||+||-+.+ +|..+ ... +.++.++|.|.+|+ ++.++..
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qR----FaPlnSWPDN~nLDKarRLLWP 146 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQR----FAPLNSWPDNANLDKARRLLWP 146 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCcee----cccccCCCcccchHHHHHHhhh
Confidence 45666666665543 4799999999999986 44443 333 45789999999995 8999999
Q ss_pred HHHHHhccCCCcccHHHHHHHhhhchhcccCCCcccccCCCCCCCCCCc-------------------------------
Q 019638 110 AKAKLEGICPGVVSCADIVALAARDGVALVKGPFYEVPTGRRDGKVSSK------------------------------- 158 (338)
Q Consensus 110 iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~------------------------------- 158 (338)
||+++ +..||+||+|+|++.+|++.+|++.+.+..||.|-..+..
T Consensus 147 IKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqM 222 (730)
T COG0376 147 IKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQM 222 (730)
T ss_pred HhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhhee
Confidence 99998 5689999999999999999999999999999999887765
Q ss_pred -------cccCCCCCCCCcHHHHHHHHHHCCCCccccchhcccccccccccccccccccccCCCCCCCCCCCCHHHHHHH
Q 019638 159 -------SLADNLPEVDDSIQLLKSKFRQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQL 231 (338)
Q Consensus 159 -------~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs~GaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L 231 (338)
++++..|+|..+..+++..|++|+++.+|.|||++||||+|.+|...-..-+ +++|.--+--.+.|
T Consensus 223 GLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGl 295 (730)
T COG0376 223 GLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGL 295 (730)
T ss_pred eeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhhcc
Confidence 3346689999999999999999999999999999999999999975422211 46676655555555
Q ss_pred --HhcCCCC-CCCCCCCCC---CCCCccccchHHHHHhhcC-----------------------------------cccc
Q 019638 232 --KSKCPFQ-GDPNTRIPL---DPVTDFIFDDQIFLNIKNG-----------------------------------FAVI 270 (338)
Q Consensus 232 --~~~Cp~~-~~~~~~~~l---D~~Tp~~FDN~Yy~~l~~~-----------------------------------~glL 270 (338)
++.|-.. +.++.+..+ -+.||++|||+||.+|... -.+|
T Consensus 296 GW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~Ml 375 (730)
T COG0376 296 GWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMML 375 (730)
T ss_pred ccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceee
Confidence 3344322 222222222 2569999999999999863 1479
Q ss_pred cchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHHhcC
Q 019638 271 ASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKMGNL 320 (338)
Q Consensus 271 ~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km~~l 320 (338)
++|.+|--||..+++.++|..|| +.|.+.|++||.||.+-
T Consensus 376 ttDlaLr~DP~Y~kIs~rf~e~p----------d~F~~~FArAWfKLtHR 415 (730)
T COG0376 376 TTDLALRFDPEYEKISRRFLEDP----------DEFADAFARAWFKLTHR 415 (730)
T ss_pred ccchhhhcChHHHHHHHHHHhCH----------HHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999 99999999999999764
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.5e-13 Score=138.73 Aligned_cols=218 Identities=18% Similarity=0.214 Sum_probs=163.0
Q ss_pred HHHHHHHhhCCCchhhHHHHHhhcccc-------cCCCcc-eecCCCCcccccCCCCC--CC-chHHHHHHHHHHHhccC
Q 019638 50 SVTQKTFERDPGSAAVLLRLQFHDCYV-------EGCDAS-ILIDNGEEGERKASGNL--GV-GGFEIIEEAKAKLEGIC 118 (338)
Q Consensus 50 ~~v~~~~~~d~~~aa~lLRL~FHDCfv-------~GcDgS-iLL~~~~~~E~~~~~N~--~L-~g~~~i~~iK~~le~~c 118 (338)
..++..+....-....|+-.+|-.+.+ +|.+|. |.|. +.++++.|. -| +-+.+++.|.+...
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa----PqkdWevN~P~~l~kvl~~le~iq~~fn--- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA----PQKDWEVNQPAELAKVLAVLEKIQKEFN--- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec----ccccCCCCCHHHHHHHHHHHHHHHHHhc---
Confidence 355666666666788899999988864 788877 7775 689999997 34 46888999988875
Q ss_pred CCcccHHHHHHHhhhchhccc---CCCcc--cccCCCCCCCCCCcccc--CCC-CCC------------CCcHHHHHHHH
Q 019638 119 PGVVSCADIVALAARDGVALV---KGPFY--EVPTGRRDGKVSSKSLA--DNL-PEV------------DDSIQLLKSKF 178 (338)
Q Consensus 119 p~~VScADilalAar~av~~~---GGP~~--~v~~GR~D~~~s~~~~~--~~l-P~p------------~~~~~~l~~~F 178 (338)
..||.||+|+|++..+||.+ +|-.+ ++.+||.|++....... ..| |-. .....-|++.-
T Consensus 525 -kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 525 -KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred -CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 46999999999999999984 67655 55699999986554321 111 221 12356678888
Q ss_pred HHCCCCccccchhcccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchH
Q 019638 179 RQKGLSDRDLVLLSGGGHTIGLTACFFMQVRLYNFTPGGGSDPAINPEFLKQLKSKCPFQGDPNTRIPLDPVTDFIFDDQ 258 (338)
Q Consensus 179 ~~~Gls~~dlVaLs~GaHTiG~ahc~~f~~Rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~ 258 (338)
+-.+||..||++|+||-..+|..+..+ ...|. +..|....|.
T Consensus 604 qlL~LtapemtVLiGGlRvLg~n~g~s------------------------------------~~GVf--T~~pg~Ltnd 645 (730)
T COG0376 604 QLLTLTAPEMTVLIGGLRVLGANYGGS------------------------------------KHGVF--TDRPGVLTND 645 (730)
T ss_pred HHhccCCccceEEEcceEeeccCCCCC------------------------------------cccee--ccCcccccch
Confidence 889999999999997777888754211 11222 2368888899
Q ss_pred HHHHhhcCc--------------------c-----cccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHH
Q 019638 259 IFLNIKNGF--------------------A-----VIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKA 313 (338)
Q Consensus 259 Yy~~l~~~~--------------------g-----lL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~A 313 (338)
||.||+.-. | --..|..+-+++..|.+.+.||.+.. ++.|.+||+.|
T Consensus 646 FFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda--------~ekFv~DFvaa 717 (730)
T COG0376 646 FFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDA--------KEKFVKDFVAA 717 (730)
T ss_pred hhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccch--------HHHHHHHHHHH
Confidence 999888631 2 13578888899999999999998762 38999999999
Q ss_pred HHHHhcCC
Q 019638 314 MVKMGNLG 321 (338)
Q Consensus 314 m~Km~~lg 321 (338)
|.|..++.
T Consensus 718 w~kVMn~D 725 (730)
T COG0376 718 WTKVMNLD 725 (730)
T ss_pred HHHHhccc
Confidence 99999875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=55.08 E-value=1.3e+02 Score=30.12 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=29.2
Q ss_pred cCCCcccccCCCCCCCCCCcccc-CCCCCC---CCcHHHHHHHHHHCCCCc
Q 019638 139 VKGPFYEVPTGRRDGKVSSKSLA-DNLPEV---DDSIQLLKSKFRQKGLSD 185 (338)
Q Consensus 139 ~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p---~~~~~~l~~~F~~~Gls~ 185 (338)
+|-..+..+.||.+...-.+... ...+.. -..+.++.++|++.|+..
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 47778899999986653222111 111222 235778888999999865
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=44.76 E-value=18 Score=28.75 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 019638 305 SFKADFAKAMVKMGNLGVK 323 (338)
Q Consensus 305 ~F~~~Fa~Am~Km~~lgv~ 323 (338)
...+.|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3567999999999999763
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=41.59 E-value=19 Score=29.45 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHHHHHhhcc
Q 019638 6 SPKALVFALIIIYNLLAART 25 (338)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (338)
|-..|+|.|+++++||.++.
T Consensus 3 SK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 44456666666565555543
No 22
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.98 E-value=48 Score=25.81 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHHhhccc
Q 019638 47 IVSSVTQKTFERDPGSAAVLLRLQFHDCY 75 (338)
Q Consensus 47 iV~~~v~~~~~~d~~~aa~lLRL~FHDCf 75 (338)
|.|+.+++.++.+|..-...||+.+--.+
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 89999999999999999999999886554
No 23
>PRK01844 hypothetical protein; Provisional
Probab=34.32 E-value=82 Score=24.65 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHHhhccc
Q 019638 47 IVSSVTQKTFERDPGSAAVLLRLQFHDCY 75 (338)
Q Consensus 47 iV~~~v~~~~~~d~~~aa~lLRL~FHDCf 75 (338)
+-|+.+++.++++|..-...||..+--.+
T Consensus 24 ~ark~~~k~lk~NPpine~mir~Mm~QMG 52 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQMLKMMMMQMG 52 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 67899999999999999999999876554
No 24
>PRK00523 hypothetical protein; Provisional
Probab=27.40 E-value=76 Score=24.81 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHHhhccc
Q 019638 47 IVSSVTQKTFERDPGSAAVLLRLQFHDCY 75 (338)
Q Consensus 47 iV~~~v~~~~~~d~~~aa~lLRL~FHDCf 75 (338)
+-|+.+++.++++|..-...||..+--..
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QMG 53 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQMG 53 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHhC
Confidence 67899999999999999999998876554
No 25
>PRK05269 transaldolase B; Provisional
Probab=24.76 E-value=2.9e+02 Score=27.34 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=30.7
Q ss_pred cCCCcccccCCCCCCCCCCcccc-CCCC---CCCCcHHHHHHHHHHCCCCccc
Q 019638 139 VKGPFYEVPTGRRDGKVSSKSLA-DNLP---EVDDSIQLLKSKFRQKGLSDRD 187 (338)
Q Consensus 139 ~GGP~~~v~~GR~D~~~s~~~~~-~~lP---~p~~~~~~l~~~F~~~Gls~~d 187 (338)
+|-..+..+.||-|...-...+. ..-+ ++-..+.++.+.|++.|+..+-
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~i 222 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVV 222 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceE
Confidence 47778899999998642211100 0111 1234688888899999987653
No 26
>COG3652 Predicted outer membrane protein [Function unknown]
Probab=22.00 E-value=1.2e+02 Score=27.32 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=32.3
Q ss_pred ccccchHHHHHhhcCcccccchhhccCChhHHHHHHHHhhccCCCCCCCCChhHHHHHHHHHHHHH
Q 019638 252 DFIFDDQIFLNIKNGFAVIASDARLYDDENTKRILESYVSSAVGNSSSSGSLPSFKADFAKAMVKM 317 (338)
Q Consensus 252 p~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~~~~~~~~~~~~~F~~~Fa~Am~Km 317 (338)
+..||+.|+.|-+. .+.++....+.|+.++.. ..=.+.|++.+.++
T Consensus 109 g~~FDk~Y~~~~va------------~Hq~~~~l~~~~~~~~~a--------n~~L~~~aet~L~~ 154 (170)
T COG3652 109 GRGFDKAYAENMVA------------YHQQTLNLLETYAADSAA--------NAELQSFAETALPR 154 (170)
T ss_pred cccccHHHHHHHHH------------HHHHHHHHHHHhhcccCC--------CHHHHHHHHHHHHH
Confidence 67899999987654 345666777788876522 45567777777665
No 27
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=21.93 E-value=50 Score=32.03 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.8
Q ss_pred CCCchHHHHHHHHHHHHHHhh
Q 019638 3 NFKSPKALVFALIIIYNLLAA 23 (338)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (338)
||..+|-|.|+|.|+||++.-
T Consensus 169 NFYNlr~lALflAFaINFILL 189 (274)
T PF06459_consen 169 NFYNLRFLALFLAFAINFILL 189 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998865
No 28
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.16 E-value=74 Score=27.40 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHH-hhcccccccccCccccccC
Q 019638 7 PKALVFALIIIYNLL-AARTVSSQGQLQVGFYSKT 40 (338)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~fY~~s 40 (338)
||+.+++++++..++ ++++++....+.+|-|.-+
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~~~~~kpGlWe~t 35 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAAAPDIKPGLWEVT 35 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccccCCCCCcccEEE
Confidence 344444444444333 4444444556887777633
Done!