BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019640
         (338 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
           Tuberculosis
 pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
           Tuberculosis
          Length = 394

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 132 TGLEKNLFGNHPVSLAVAESRGPPPAFASDPIVNVNASSSPSKDGINITEGY 183
           TG   ++ G H   LA+ + R     +  DP   +++S +P   G+ +  GY
Sbjct: 82  TGWVSSIVGVHNWHLALFDQRAQEEVWGEDPSTRISSSYAPMGAGVVVDGGY 133


>pdb|3F8B|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Lmrr In Drug Free State
 pdb|3F8B|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Lmrr In Drug Free State
          Length = 116

 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 231 SYFADDEDGNHKKYSRRGPLRHKFLRALLPFWS 263
           SY+ D+  G  +KY R   + H+ +R     WS
Sbjct: 65  SYWGDESQGGRRKYYRLTEIGHENMRLAFESWS 97


>pdb|3F8C|A Chain A, Crystal Structure Of Multidrug Binding Transcriptional
           Regulator Lmrr Complexed With Hoechst 33342
 pdb|3F8F|A Chain A, Crystal Structure Of Multidrug Binding Transcriptional
           Regulator Lmrr Complexed With Daunomycin
 pdb|3F8F|B Chain B, Crystal Structure Of Multidrug Binding Transcriptional
           Regulator Lmrr Complexed With Daunomycin
          Length = 126

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 231 SYFADDEDGNHKKYSRRGPLRHKFLRALLPFWS 263
           SY+ D+  G  +KY R   + H+ +R     WS
Sbjct: 65  SYWGDESQGGRRKYYRLTEIGHENMRLAFESWS 97


>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
          Length = 69

 Score = 28.1 bits (61), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 53 KCCQCQAVLEEESGSETTRLGCLHVIHTSCL 83
          KC  C ++LEE  G +  RL C+H+ H  C+
Sbjct: 16 KCTICLSILEE--GEDVRRLPCMHLFHQVCV 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,552,408
Number of Sequences: 62578
Number of extensions: 425087
Number of successful extensions: 837
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 8
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)