Query 019640
Match_columns 338
No_of_seqs 222 out of 668
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:52:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ep4_A Ring finger protein 24; 99.3 1.2E-12 4.2E-17 98.0 5.9 53 52-114 16-68 (74)
2 1x4j_A Ring finger protein 38; 99.3 1.4E-12 4.7E-17 98.3 4.0 51 51-111 23-73 (75)
3 2l0b_A E3 ubiquitin-protein li 99.3 2.6E-12 8.8E-17 101.1 4.7 50 52-111 41-90 (91)
4 1v87_A Deltex protein 2; ring- 99.3 3E-12 1E-16 103.1 4.6 70 34-109 11-93 (114)
5 2kiz_A E3 ubiquitin-protein li 99.3 4.7E-12 1.6E-16 93.6 5.3 50 52-111 15-64 (69)
6 1iym_A EL5; ring-H2 finger, ub 99.3 3E-12 1E-16 90.6 3.9 48 52-109 6-54 (55)
7 2ecl_A Ring-box protein 2; RNF 99.2 4.6E-12 1.6E-16 98.0 4.1 47 54-110 29-76 (81)
8 2ecm_A Ring finger and CHY zin 99.2 6.5E-12 2.2E-16 88.7 4.4 49 52-109 6-54 (55)
9 2ect_A Ring finger protein 126 99.2 1.4E-11 4.8E-16 93.0 4.7 52 51-112 15-66 (78)
10 2d8s_A Cellular modulator of i 99.1 9.4E-11 3.2E-15 91.8 4.9 54 52-114 16-74 (80)
11 2ea6_A Ring finger protein 4; 99.1 1.3E-10 4.3E-15 84.9 5.2 50 52-109 16-67 (69)
12 3ng2_A RNF4, snurf, ring finge 99.1 9.7E-11 3.3E-15 86.4 4.2 52 52-111 11-64 (71)
13 2ct2_A Tripartite motif protei 99.0 3.3E-10 1.1E-14 86.5 6.6 55 51-111 15-69 (88)
14 2xeu_A Ring finger protein 4; 99.0 1.6E-10 5.4E-15 83.2 4.5 52 52-111 4-57 (64)
15 3dpl_R Ring-box protein 1; ubi 99.0 2.5E-10 8.6E-15 93.7 5.4 49 52-108 38-99 (106)
16 1chc_A Equine herpes virus-1 r 99.0 1.9E-10 6.6E-15 84.5 3.8 47 52-110 6-52 (68)
17 3lrq_A E3 ubiquitin-protein li 99.0 2.8E-10 9.4E-15 90.8 4.7 66 52-132 23-89 (100)
18 2ysl_A Tripartite motif-contai 99.0 6.2E-10 2.1E-14 82.6 5.4 50 52-111 21-70 (73)
19 2d8t_A Dactylidin, ring finger 98.9 2.7E-10 9.1E-15 85.1 2.6 46 52-110 16-61 (71)
20 2djb_A Polycomb group ring fin 98.9 1.2E-09 4.1E-14 81.7 6.0 47 52-111 16-63 (72)
21 2ecy_A TNF receptor-associated 98.9 8.7E-10 3E-14 81.0 5.0 48 52-111 16-63 (66)
22 2csy_A Zinc finger protein 183 98.9 4.5E-10 1.5E-14 85.6 3.4 46 51-109 15-60 (81)
23 2yur_A Retinoblastoma-binding 98.9 1.1E-09 3.9E-14 82.5 5.4 52 51-113 15-67 (74)
24 1t1h_A Gspef-atpub14, armadill 98.9 2.6E-09 8.8E-14 80.5 6.3 48 52-111 9-56 (78)
25 1jm7_A BRCA1, breast cancer ty 98.9 2.7E-09 9.2E-14 85.0 6.7 68 52-129 22-90 (112)
26 1g25_A CDK-activating kinase a 98.9 1.9E-09 6.4E-14 79.0 5.1 52 52-111 4-56 (65)
27 2ecn_A Ring finger protein 141 98.9 3.1E-10 1.1E-14 84.0 0.9 46 52-111 16-61 (70)
28 3fl2_A E3 ubiquitin-protein li 98.9 2.6E-09 9E-14 87.6 6.4 50 52-113 53-102 (124)
29 4a0k_B E3 ubiquitin-protein li 98.9 3.9E-10 1.3E-14 94.6 1.0 49 52-108 49-110 (117)
30 4ayc_A E3 ubiquitin-protein li 98.9 1.1E-09 3.8E-14 91.8 3.8 46 52-110 54-99 (138)
31 3ztg_A E3 ubiquitin-protein li 98.9 4.1E-09 1.4E-13 81.7 6.6 50 51-111 13-63 (92)
32 2ecw_A Tripartite motif-contai 98.8 4.3E-09 1.5E-13 79.3 6.2 53 52-111 20-72 (85)
33 2ysj_A Tripartite motif-contai 98.8 3.7E-09 1.3E-13 76.8 5.2 43 52-104 21-63 (63)
34 2y43_A E3 ubiquitin-protein li 98.8 3.6E-09 1.2E-13 83.4 5.2 47 52-111 23-70 (99)
35 4ap4_A E3 ubiquitin ligase RNF 98.8 2.6E-09 8.8E-14 86.3 4.2 52 52-111 8-61 (133)
36 2ecv_A Tripartite motif-contai 98.8 5.5E-09 1.9E-13 78.6 5.1 53 52-111 20-72 (85)
37 2ecj_A Tripartite motif-contai 98.8 5E-09 1.7E-13 74.3 4.5 43 52-104 16-58 (58)
38 2egp_A Tripartite motif-contai 98.8 2.8E-09 9.5E-14 80.0 2.8 54 52-111 13-66 (79)
39 4ap4_A E3 ubiquitin ligase RNF 98.7 5.2E-09 1.8E-13 84.5 4.0 52 52-111 73-126 (133)
40 2ckl_B Ubiquitin ligase protei 98.7 7.8E-09 2.7E-13 88.6 5.0 48 52-111 55-103 (165)
41 1z6u_A NP95-like ring finger p 98.7 1.8E-08 6.1E-13 86.5 6.3 49 52-112 79-127 (150)
42 2ckl_A Polycomb group ring fin 98.7 1.1E-08 3.7E-13 82.0 4.1 47 52-111 16-63 (108)
43 1rmd_A RAG1; V(D)J recombinati 98.7 1.4E-08 4.9E-13 82.1 4.5 48 52-111 24-71 (116)
44 3l11_A E3 ubiquitin-protein li 98.6 5.4E-09 1.9E-13 84.5 1.5 46 52-109 16-61 (115)
45 2ct0_A Non-SMC element 1 homol 98.6 1.9E-08 6.7E-13 78.2 3.5 47 52-108 16-62 (74)
46 3hct_A TNF receptor-associated 98.6 2E-08 6.9E-13 81.9 3.7 48 52-111 19-66 (118)
47 1e4u_A Transcriptional repress 98.5 7.4E-08 2.5E-12 74.8 4.8 50 52-111 12-63 (78)
48 1jm7_B BARD1, BRCA1-associated 98.5 6.2E-08 2.1E-12 78.9 3.3 45 52-111 23-68 (117)
49 2c2l_A CHIP, carboxy terminus 98.4 1.4E-07 4.7E-12 84.8 3.8 70 52-135 209-278 (281)
50 1wgm_A Ubiquitin conjugation f 98.4 3.7E-07 1.3E-11 73.4 5.0 70 52-136 23-93 (98)
51 1bor_A Transcription factor PM 98.3 6.7E-08 2.3E-12 69.6 0.2 46 52-113 7-52 (56)
52 2y1n_A E3 ubiquitin-protein li 98.3 2.9E-07 9.8E-12 91.0 4.6 48 52-111 333-380 (389)
53 3knv_A TNF receptor-associated 98.3 9.5E-08 3.3E-12 81.3 0.9 48 52-111 32-79 (141)
54 4ic3_A E3 ubiquitin-protein li 98.2 3.8E-07 1.3E-11 69.1 2.7 41 52-109 25-66 (74)
55 3hcs_A TNF receptor-associated 98.2 6.8E-07 2.3E-11 76.7 3.5 48 52-111 19-66 (170)
56 2kr4_A Ubiquitin conjugation f 98.2 1.5E-06 5.1E-11 67.8 4.8 47 52-111 15-61 (85)
57 2kre_A Ubiquitin conjugation f 98.2 1.6E-06 5.4E-11 70.0 4.8 47 52-111 30-76 (100)
58 3k1l_B Fancl; UBC, ring, RWD, 98.1 4.2E-07 1.4E-11 89.3 1.0 57 52-109 309-372 (381)
59 2yu4_A E3 SUMO-protein ligase 98.1 2E-06 6.9E-11 68.0 4.6 49 52-107 8-59 (94)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.8E-06 6.1E-11 64.1 3.5 46 52-108 7-57 (60)
61 2f42_A STIP1 homology and U-bo 98.1 2.2E-06 7.6E-11 76.5 4.8 70 52-135 107-176 (179)
62 2vje_A E3 ubiquitin-protein li 98.0 2.9E-06 1E-10 62.8 3.5 45 52-109 9-56 (64)
63 2ecg_A Baculoviral IAP repeat- 98.0 2.1E-06 7.1E-11 64.9 2.2 42 52-110 26-68 (75)
64 2vje_B MDM4 protein; proto-onc 98.0 3.4E-06 1.2E-10 62.3 2.9 47 52-109 8-55 (63)
65 1wim_A KIAA0161 protein; ring 98.0 6.4E-07 2.2E-11 70.2 -1.4 53 52-107 6-61 (94)
66 2ea5_A Cell growth regulator w 97.7 1.6E-05 5.5E-10 59.8 2.3 42 52-110 16-58 (68)
67 2yho_A E3 ubiquitin-protein li 97.6 2.2E-05 7.6E-10 60.5 1.9 41 52-109 19-60 (79)
68 3t6p_A Baculoviral IAP repeat- 97.4 2.6E-05 9E-10 75.6 1.1 41 52-109 296-337 (345)
69 3htk_C E3 SUMO-protein ligase 97.3 7.7E-05 2.6E-09 70.6 2.4 48 52-110 182-232 (267)
70 3nw0_A Non-structural maintena 97.2 0.00022 7.4E-09 65.8 3.7 50 51-111 180-229 (238)
71 2bay_A PRE-mRNA splicing facto 97.1 0.00019 6.4E-09 53.1 2.5 46 52-110 4-50 (61)
72 3vk6_A E3 ubiquitin-protein li 96.4 0.0027 9.2E-08 52.4 4.2 45 53-109 3-48 (101)
73 2lri_C Autoimmune regulator; Z 93.6 0.068 2.3E-06 40.3 4.0 50 52-111 13-63 (66)
74 1f62_A Transcription factor WS 86.8 0.34 1.1E-05 33.9 2.2 47 53-106 2-49 (51)
75 1afo_A Glycophorin A; integral 84.0 1.7 5.9E-05 30.2 4.6 28 298-325 8-36 (40)
76 2l5u_A Chromodomain-helicase-D 81.6 0.59 2E-05 34.2 1.7 46 51-106 11-57 (61)
77 4bbq_A Lysine-specific demethy 79.7 0.2 6.8E-06 40.4 -1.6 34 73-106 80-113 (117)
78 1mm2_A MI2-beta; PHD, zinc fin 77.1 0.59 2E-05 34.3 0.4 47 52-108 10-57 (61)
79 1wil_A KIAA1045 protein; ring 73.1 2.8 9.4E-05 33.8 3.4 50 51-105 15-74 (89)
80 3u5n_A E3 ubiquitin-protein li 72.6 0.76 2.6E-05 40.7 0.1 49 52-110 8-57 (207)
81 2lv9_A Histone-lysine N-methyl 72.5 2.2 7.5E-05 34.0 2.8 60 38-106 14-75 (98)
82 3o36_A Transcription intermedi 71.8 1.1 3.7E-05 38.9 0.8 49 52-110 5-54 (184)
83 2yql_A PHD finger protein 21A; 71.6 0.33 1.1E-05 34.8 -2.1 46 51-106 9-55 (56)
84 2ysm_A Myeloid/lymphoid or mix 71.3 0.63 2.1E-05 37.3 -0.7 82 21-111 24-108 (111)
85 2k16_A Transcription initiatio 68.7 2 6.8E-05 32.1 1.6 51 51-108 18-69 (75)
86 2cs3_A Protein C14ORF4, MY039 67.6 3.9 0.00013 32.9 3.1 50 51-103 15-69 (93)
87 2ysm_A Myeloid/lymphoid or mix 65.4 2 6.9E-05 34.3 1.2 49 51-106 7-56 (111)
88 1we9_A PHD finger family prote 65.0 1.5 5E-05 31.9 0.2 50 52-106 7-57 (64)
89 3lqh_A Histone-lysine N-methyl 63.8 1.1 3.8E-05 39.9 -0.8 54 52-108 3-64 (183)
90 3v43_A Histone acetyltransfera 63.4 1.7 5.9E-05 35.1 0.4 48 53-106 63-111 (112)
91 1fp0_A KAP-1 corepressor; PHD 61.9 2.3 8E-05 33.9 0.9 46 52-107 26-72 (88)
92 3asl_A E3 ubiquitin-protein li 59.7 2.3 7.8E-05 32.0 0.5 48 53-106 20-68 (70)
93 2ro1_A Transcription intermedi 59.6 2 6.7E-05 37.9 0.1 48 52-108 3-50 (189)
94 2puy_A PHD finger protein 21A; 58.6 1 3.5E-05 32.6 -1.6 46 52-107 6-52 (60)
95 1weu_A Inhibitor of growth fam 58.4 5.9 0.0002 31.6 2.7 46 52-108 37-86 (91)
96 1wen_A Inhibitor of growth fam 58.3 5 0.00017 30.3 2.1 45 52-107 17-65 (71)
97 2e6s_A E3 ubiquitin-protein li 58.2 1.7 5.8E-05 33.5 -0.5 49 52-106 27-76 (77)
98 3v43_A Histone acetyltransfera 57.6 9 0.00031 30.8 3.7 50 52-105 6-62 (112)
99 2kw0_A CCMH protein; oxidoredu 57.5 9 0.00031 30.7 3.6 29 98-131 23-51 (90)
100 1fre_A Nuclear factor XNF7; zi 57.4 5.1 0.00018 26.3 1.9 27 7-33 10-36 (42)
101 2yt5_A Metal-response element- 57.0 3.9 0.00013 29.7 1.3 50 52-106 7-60 (66)
102 1xwh_A Autoimmune regulator; P 56.6 1.2 4E-05 33.0 -1.6 46 52-107 9-55 (66)
103 2lbm_A Transcriptional regulat 56.5 7.6 0.00026 33.4 3.2 45 52-106 64-116 (142)
104 1wyh_A SLIM 2, skeletal muscle 55.8 8 0.00027 27.6 2.8 40 52-110 6-45 (72)
105 2jun_A Midline-1; B-BOX, TRIM, 55.0 5.4 0.00019 30.7 1.9 33 52-87 4-38 (101)
106 1iml_A CRIP, cysteine rich int 53.9 4.4 0.00015 29.6 1.2 12 53-64 2-13 (76)
107 3shb_A E3 ubiquitin-protein li 53.7 2 6.7E-05 33.2 -0.8 47 53-106 28-76 (77)
108 1x63_A Skeletal muscle LIM-pro 52.2 13 0.00045 27.2 3.6 40 52-110 16-55 (82)
109 2ko5_A Ring finger protein Z; 50.7 6.4 0.00022 32.2 1.7 52 43-109 20-72 (99)
110 1wew_A DNA-binding family prot 50.4 7.3 0.00025 29.5 1.9 55 51-111 16-76 (78)
111 3mjh_B Early endosome antigen 50.2 3 0.0001 27.9 -0.2 13 97-109 4-16 (34)
112 1wep_A PHF8; structural genomi 49.8 10 0.00035 28.7 2.7 53 52-110 13-66 (79)
113 3ql9_A Transcriptional regulat 48.9 18 0.00063 30.5 4.4 52 44-105 51-109 (129)
114 2egq_A FHL1 protein; LIM domai 47.5 14 0.00047 26.7 3.0 40 52-110 16-58 (77)
115 2rsd_A E3 SUMO-protein ligase 46.0 1.2 4E-05 33.2 -3.1 50 52-105 11-63 (68)
116 2hl7_A Cytochrome C-type bioge 45.8 13 0.00044 29.4 2.7 28 99-131 27-54 (84)
117 3o70_A PHD finger protein 13; 43.2 3.7 0.00013 30.7 -0.7 46 52-106 20-66 (68)
118 2did_A Tripartite motif protei 42.5 6.1 0.00021 27.3 0.3 29 7-35 15-43 (53)
119 1g47_A Pinch protein; LIM doma 42.1 14 0.00046 26.7 2.2 46 45-111 7-52 (77)
120 1wee_A PHD finger family prote 42.0 1.7 5.8E-05 32.5 -2.8 55 49-110 14-69 (72)
121 2cu8_A Cysteine-rich protein 2 41.8 11 0.00037 27.4 1.7 39 52-110 10-48 (76)
122 2g6q_A Inhibitor of growth pro 40.7 3.4 0.00012 30.5 -1.3 44 52-106 12-59 (62)
123 2kwj_A Zinc finger protein DPF 40.6 8.5 0.00029 31.1 1.0 35 52-86 2-41 (114)
124 2ri7_A Nucleosome-remodeling f 40.6 3.2 0.00011 35.3 -1.6 50 52-107 9-59 (174)
125 4gne_A Histone-lysine N-methyl 40.4 12 0.00041 30.5 1.9 43 51-105 15-60 (107)
126 2l43_A N-teminal domain from h 40.3 25 0.00087 27.3 3.7 51 51-108 25-76 (88)
127 3c6w_A P28ING5, inhibitor of g 39.8 3.3 0.00011 30.2 -1.4 44 52-106 10-57 (59)
128 2e6r_A Jumonji/ARID domain-con 39.7 2.8 9.4E-05 33.1 -2.0 48 52-106 17-65 (92)
129 2l3k_A Rhombotin-2, linker, LI 39.6 13 0.00044 29.8 1.9 40 53-111 10-49 (123)
130 1wev_A Riken cDNA 1110020M19; 39.6 2.6 8.8E-05 33.0 -2.2 49 52-106 17-71 (88)
131 1x61_A Thyroid receptor intera 39.5 19 0.00064 25.7 2.6 38 52-108 6-43 (72)
132 3ask_A E3 ubiquitin-protein li 39.3 4.9 0.00017 37.0 -0.7 47 52-106 175-224 (226)
133 2vnf_A ING 4, P29ING4, inhibit 38.4 3.7 0.00013 29.9 -1.4 44 52-106 11-58 (60)
134 2vpb_A Hpygo1, pygopus homolog 38.4 15 0.00052 27.2 2.0 48 52-105 9-64 (65)
135 2d8u_A Ubiquitin ligase TRIM63 38.3 10 0.00034 26.9 1.0 29 8-36 17-45 (64)
136 2dj7_A Actin-binding LIM prote 37.9 14 0.00049 27.5 1.8 38 52-109 16-53 (80)
137 2ehe_A Four and A half LIM dom 37.9 28 0.00096 25.4 3.4 39 52-109 16-54 (82)
138 1x4k_A Skeletal muscle LIM-pro 37.4 15 0.0005 26.2 1.7 40 52-110 6-45 (72)
139 1x4l_A Skeletal muscle LIM-pro 36.4 22 0.00076 25.3 2.6 40 52-109 6-46 (72)
140 3ddt_A E3 ubiquitin-protein li 35.7 6.4 0.00022 26.7 -0.4 28 8-35 15-42 (48)
141 2ku3_A Bromodomain-containing 35.4 29 0.00099 26.1 3.2 47 51-105 16-64 (71)
142 4fo9_A E3 SUMO-protein ligase 33.7 35 0.0012 33.4 4.2 49 52-111 216-267 (360)
143 2kwj_A Zinc finger protein DPF 32.9 2.9 0.0001 33.9 -3.0 77 21-105 25-106 (114)
144 1z2q_A LM5-1; membrane protein 32.5 24 0.0008 27.0 2.3 42 38-86 11-55 (84)
145 2yrg_A Tripartite motif-contai 32.3 9.4 0.00032 27.3 -0.0 29 7-35 21-49 (59)
146 3f6q_B LIM and senescent cell 32.0 20 0.00069 25.1 1.7 41 52-111 12-52 (72)
147 2kgg_A Histone demethylase jar 30.6 5.2 0.00018 28.1 -1.6 47 53-105 4-52 (52)
148 1x68_A FHL5 protein; four-and- 30.5 25 0.00087 25.4 2.1 40 52-109 6-46 (76)
149 2co8_A NEDD9 interacting prote 30.2 29 0.00098 25.8 2.4 40 51-110 15-54 (82)
150 2cuq_A Four and A half LIM dom 30.1 37 0.0013 24.5 3.0 37 52-109 16-52 (80)
151 3i2d_A E3 SUMO-protein ligase 29.6 41 0.0014 33.1 4.0 49 52-111 250-301 (371)
152 2d8z_A Four and A half LIM dom 28.3 26 0.00089 24.7 1.8 37 52-109 6-42 (70)
153 2yw8_A RUN and FYVE domain-con 28.0 29 0.00099 26.4 2.1 40 40-86 11-53 (82)
154 2dlo_A Thyroid receptor-intera 27.7 34 0.0012 25.0 2.4 37 52-109 16-52 (81)
155 2cur_A Skeletal muscle LIM-pro 27.0 35 0.0012 24.0 2.3 37 52-109 6-42 (69)
156 1x4u_A Zinc finger, FYVE domai 26.4 30 0.001 26.3 1.9 39 40-86 6-48 (84)
157 2jvx_A NF-kappa-B essential mo 26.4 17 0.00057 23.4 0.4 12 97-108 2-13 (28)
158 2dar_A PDZ and LIM domain prot 26.2 34 0.0012 25.6 2.2 38 52-110 26-63 (90)
159 3t7l_A Zinc finger FYVE domain 25.7 28 0.00094 27.1 1.6 44 40-87 12-55 (90)
160 2xqn_T Testin, TESS; metal-bin 24.8 49 0.0017 26.0 3.0 47 52-112 31-77 (126)
161 1nyp_A Pinch protein; LIM doma 24.0 41 0.0014 23.4 2.2 38 52-110 6-43 (66)
162 1weo_A Cellulose synthase, cat 23.6 1.2E+02 0.0042 24.4 5.0 51 52-109 17-69 (93)
163 2d8y_A Eplin protein; LIM doma 23.3 40 0.0014 25.2 2.1 40 52-111 16-55 (91)
164 1wig_A KIAA1808 protein; LIM d 23.2 49 0.0017 23.9 2.5 38 52-110 6-43 (73)
165 2csv_A Tripartite motif protei 22.7 23 0.00078 25.8 0.6 30 7-37 25-54 (72)
166 2d8x_A Protein pinch; LIM doma 22.6 51 0.0017 23.2 2.5 38 52-110 6-43 (70)
167 3kqi_A GRC5, PHD finger protei 22.4 39 0.0013 25.1 1.9 52 52-110 10-64 (75)
168 2xb1_A Pygopus homolog 2, B-ce 22.3 30 0.001 27.7 1.2 53 52-110 4-64 (105)
169 2rgt_A Fusion of LIM/homeobox 22.1 40 0.0014 28.2 2.0 41 52-111 66-106 (169)
170 1joc_A EEA1, early endosomal a 21.7 35 0.0012 28.1 1.6 40 40-86 61-103 (125)
171 1x62_A C-terminal LIM domain p 21.3 40 0.0014 24.5 1.7 37 52-109 16-52 (79)
172 1x6a_A LIMK-2, LIM domain kina 21.2 43 0.0015 24.3 1.9 38 52-110 16-53 (81)
173 2iyb_E Testin, TESS, TES; LIM 20.9 37 0.0013 23.9 1.4 39 52-109 3-43 (65)
174 2l4z_A DNA endonuclease RBBP8, 20.5 35 0.0012 27.6 1.3 38 52-109 62-99 (123)
175 2cor_A Pinch protein; LIM doma 20.4 61 0.0021 23.7 2.6 38 52-110 16-53 (79)
No 1
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=97.95 Aligned_cols=53 Identities=25% Similarity=0.592 Sum_probs=45.7
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~i 114 (338)
..|+||++.|..++ .++.|+|+|+||..||.+|++... +||+||++|.+...+
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~f~~~Ci~~~~~~~~--------~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 16 ELCAVCLEDFKPRD--ELGICPCKHAFHRKCLIKWLEVRK--------VCPLCNMPVLQLAQL 68 (74)
T ss_dssp CBCSSSCCBCCSSS--CEEEETTTEEEEHHHHHHHHHHCS--------BCTTTCCBCSSCCSC
T ss_pred CCCcCCCcccCCCC--cEEEcCCCCEecHHHHHHHHHcCC--------cCCCcCccccccccc
Confidence 78999999998875 677789999999999999998742 599999999876544
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=98.32 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=44.1
Q ss_pred CCcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
...|+||++.|..++ .++.|+|+|+||..||..|++.. .+||+||+++.+.
T Consensus 23 ~~~C~IC~~~~~~~~--~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ--LLRVLPCNHEFHAKCVDKWLKAN--------RTCPICRADSGPS 73 (75)
T ss_dssp CCEETTTTEECCBTC--EEEEETTTEEEETTHHHHHHHHC--------SSCTTTCCCCCCC
T ss_pred CCCCeECCcccCCCC--eEEEECCCCHhHHHHHHHHHHcC--------CcCcCcCCcCCCC
Confidence 378999999998875 67778999999999999999874 2599999998764
No 3
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-12 Score=101.06 Aligned_cols=50 Identities=26% Similarity=0.562 Sum_probs=43.5
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|..++ .++.|+|+|+||..||+.|++.. .+||+||+++.++
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~~~--------~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQKS--------GTCPVCRCMFPPP 90 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHTTT--------CBCTTTCCBSSCC
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHHcC--------CcCcCcCccCCCC
Confidence 67999999998875 67789999999999999999754 3699999998763
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.26 E-value=3e-12 Score=103.15 Aligned_cols=70 Identities=26% Similarity=0.418 Sum_probs=49.5
Q ss_pred eeeeecccccccCCCCCCCcccccccccccccC------------CCeE-EecCCCccCHHHHHHHHhcCCCCCCCCCCC
Q 019640 34 CVVRTYSEWVIDGEYDWPPKCCQCQAVLEEESG------------SETT-RLGCLHVIHTSCLVSHIKSFPPHTAPAGYV 100 (338)
Q Consensus 34 CvVqsYlqWL~Dsdyd~~~~C~ICle~L~~gD~------------~evv-RL~C~HvFH~~CLd~WL~~~p~nTaPagy~ 100 (338)
=+++.|++.+.+.. + ..|+||++.|.+... ..++ .++|+|+||.+||+.|+..... ....+
T Consensus 11 ~~i~~~~~~~~~~~-~--~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---~~~~~ 84 (114)
T 1v87_A 11 QVIRKYTEELKVAP-E--EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---DGSLQ 84 (114)
T ss_dssp HHHHHHEEECSSCC-S--CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---SSCCB
T ss_pred HHHHHHHHhccCCC-C--CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---CCCCc
Confidence 35677888776543 3 589999999976420 1233 5689999999999999964211 12457
Q ss_pred CCCCCCCcc
Q 019640 101 CPLCSTTIW 109 (338)
Q Consensus 101 CP~Cr~~I~ 109 (338)
||+||+.+.
T Consensus 85 CP~CR~~~~ 93 (114)
T 1v87_A 85 CPSCKTIYG 93 (114)
T ss_dssp CTTTCCBSS
T ss_pred CCCCCCccC
Confidence 999999775
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=4.7e-12 Score=93.59 Aligned_cols=50 Identities=32% Similarity=0.749 Sum_probs=43.5
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|..++ .++.|+|+|+||..||.+|++.. .+||+||+.|...
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWLITN--------KKCPICRVDIEAQ 64 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHHHHC--------SBCTTTCSBSCSC
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHHHcC--------CCCcCcCccccCc
Confidence 78999999998765 68889999999999999999874 2599999998754
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.26 E-value=3e-12 Score=90.59 Aligned_cols=48 Identities=35% Similarity=0.674 Sum_probs=41.5
Q ss_pred CcccccccccccccCCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|+||++.|.+++ .++.|+ |+|+||..||.+|++.. .+||+||+++.
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~~~--------~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLPRCGHGFHAECVDMWLGSH--------STCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECSSSCCEECTTHHHHTTTTC--------CSCSSSCCCSC
T ss_pred CcCccCCccccCCC--ceEECCCCCCcccHHHHHHHHHcC--------CcCcCCCCEeE
Confidence 67999999998876 678887 99999999999999763 35999999874
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.6e-12 Score=97.96 Aligned_cols=47 Identities=32% Similarity=0.647 Sum_probs=33.6
Q ss_pred ccccccccccccCCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 54 CCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 54 C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
|+||++++..++ .++.|+ |+|+||.+||++||+.. .+||+||+++..
T Consensus 29 C~iC~~~~~~~~--~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 29 CLRCQAENKQED--CVVVWGECNHSFHNCCMSLWVKQN--------NRCPLCQQDWVV 76 (81)
T ss_dssp CTTHHHHTCTTT--CCEEEETTSCEEEHHHHHHHTTTC--------CBCTTTCCBCCE
T ss_pred CcccccccCCCc--eEEEeCCCCCccChHHHHHHHHhC--------CCCCCcCCCcch
Confidence 444444333443 566664 99999999999999875 259999998753
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.22 E-value=6.5e-12 Score=88.66 Aligned_cols=49 Identities=29% Similarity=0.577 Sum_probs=41.6
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|+||++.|.+++ ..++.++|+|+||..||.+|++.. .+||+||++|-
T Consensus 6 ~~C~IC~~~~~~~~-~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSR-VVAHVLPCGHLLHRTCYEEMLKEG--------YRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTT-SCEEECTTSCEEETTHHHHHHHHT--------CCCTTSCCSSC
T ss_pred CcCcccChhhcCCC-cCeEecCCCCcccHHHHHHHHHcC--------CcCCCCCCcCC
Confidence 67999999997764 457778999999999999999875 35999999863
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.18 E-value=1.4e-11 Score=93.04 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=44.1
Q ss_pred CCcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 019640 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~ 112 (338)
...|+||++.|.+.+ .++.|+|+|+||..||.+|++.. .+||+||+.+....
T Consensus 15 ~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 15 GLECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLEQH--------DSCPVCRKSLTGQN 66 (78)
T ss_dssp SCCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHTTT--------CSCTTTCCCCCCSC
T ss_pred CCCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHHcC--------CcCcCcCCccCCcc
Confidence 368999999998865 67778999999999999999754 35999999987653
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=9.4e-11 Score=91.80 Aligned_cols=54 Identities=28% Similarity=0.508 Sum_probs=43.7
Q ss_pred CcccccccccccccCCCeEEecCC-----CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCL-----HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~-----HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~i 114 (338)
..|.||++++++++ .+.++|. |.||.+||++||.... ..+||+|+..+.....+
T Consensus 16 ~~C~IC~~~~~~~~---~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~------~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 16 DICRICHCEGDDES---PLITPCHCTGSLHFVHQACLQQWIKSSD------TRCCELCKYEFIMETKL 74 (80)
T ss_dssp CCCSSSCCCCCSSS---CEECSSSCCSSSCCEETTHHHHHHHHHC------CSBCSSSCCBCCCCCCS
T ss_pred CCCeEcCccccCCC---eeEeccccCCcCCeeCHHHHHHHHhhCC------CCCCCCCCCeeecCccc
Confidence 68999999998764 4568996 9999999999998752 24699999998765444
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=84.90 Aligned_cols=50 Identities=28% Similarity=0.515 Sum_probs=40.8
Q ss_pred Cccccccccccccc--CCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEES--GSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD--~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|+||++.|.+.. +..++.++|+|+||..||..|++.. .+||+||++|-
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~ 67 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKIN 67 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--------SSCTTTCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC--------CCCCCCCCccC
Confidence 67999999998641 1234778999999999999999873 25999999875
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.06 E-value=9.7e-11 Score=86.35 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=42.2
Q ss_pred Ccccccccccccc--cCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.+.+. ++...+.++|||+||..||.+|++.. .+||+||+++...
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 64 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTTTCCBCCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCCCCCccChh
Confidence 6799999999763 11245778999999999999999864 3599999998754
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.3e-10 Score=86.50 Aligned_cols=55 Identities=29% Similarity=0.491 Sum_probs=45.1
Q ss_pred CCcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
...|+||++.|.+++ ...+.|+|||+||..||..|++... ....||.||+++...
T Consensus 15 ~~~C~IC~~~~~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 15 VLECPICMESFTEEQ-LRPKLLHCGHTICRQCLEKLLASSI-----NGVRCPFCSKITRIT 69 (88)
T ss_dssp CCBCTTTCCBCCTTS-SCEEECSSSCEEEHHHHHHHHHHCS-----SCBCCTTTCCCBCCS
T ss_pred CCCCccCCccccccC-CCeEECCCCChhhHHHHHHHHHcCC-----CCcCCCCCCCcccch
Confidence 367999999998765 3377889999999999999998742 246799999988653
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.04 E-value=1.6e-10 Score=83.22 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=41.8
Q ss_pred Ccccccccccccc--cCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.+.+. .++.++.++|||+||.+||.+|++.. .+||+||+++...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--------SBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC--------CCCCCCCccCCcc
Confidence 5799999999763 11245778999999999999999873 2599999998653
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.01 E-value=2.5e-10 Score=93.68 Aligned_cols=49 Identities=22% Similarity=0.467 Sum_probs=37.6
Q ss_pred Ccccccccccccc-------------cCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 52 PKCCQCQAVLEEE-------------SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 52 ~~C~ICle~L~~g-------------D~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
..|+||++.|.+. ++..++.++|+|+||..||+.||+.. .+||+||+++
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~Cr~~~ 99 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPLDNREW 99 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--------SBCSSSCSBC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC--------CcCcCCCCcc
Confidence 5788888888743 21125557999999999999999864 3599999984
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.00 E-value=1.9e-10 Score=84.46 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=39.7
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
..|+||++.+.+ .++.++|+|+||..|+..|++.. .+||+||+++..
T Consensus 6 ~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSN----YSMALPCLHAFCYVCITRWIRQN--------PTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHHHS--------CSTTTTCCCCCC
T ss_pred CCCeeCCccccC----CcEecCCCCeeHHHHHHHHHhCc--------CcCcCCChhhHh
Confidence 579999999854 36788999999999999999864 359999998853
No 17
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.99 E-value=2.8e-10 Score=90.84 Aligned_cols=66 Identities=17% Similarity=0.327 Sum_probs=49.1
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchhHHHHHHHhh
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIM 130 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~i~d~~Spl~~~Lre~l~ 130 (338)
..|+||++.|.+ .+. ++|||+||..||..|+.... ..||+||+++.+..-+. .+..+.+.+.+.
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~FC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~~l~~---~~~~~~i~~~~~ 87 (100)
T 3lrq_A 23 FRCFICMEKLRD-----ARLCPHCSKLCCFSCIRRWLTEQR-------AQCPHCRAPLQLRELVN---CRWAEEVTQQLD 87 (100)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHHHTC-------SBCTTTCCBCCGGGCEE---CTTHHHHHHHHH
T ss_pred CCCccCCccccC-----ccccCCCCChhhHHHHHHHHHHCc-------CCCCCCCCcCCHHHhHh---hHHHHHHHHHHH
Confidence 579999999954 666 89999999999999998752 46999999997643222 344555555554
Q ss_pred hh
Q 019640 131 LT 132 (338)
Q Consensus 131 q~ 132 (338)
+.
T Consensus 88 ~l 89 (100)
T 3lrq_A 88 TL 89 (100)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=6.2e-10 Score=82.58 Aligned_cols=50 Identities=22% Similarity=0.510 Sum_probs=41.0
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.+.+ .+.++|||+||..||..|++... ....||+|++++...
T Consensus 21 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSC-----GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSS-----EEECTTCCEEEHHHHHHHCSSSC-----SCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCC-----eEEcCCCChhhHHHHHHHHHcCC-----CCCCCCCCCCcCCcc
Confidence 689999999853 67789999999999999997421 245799999998654
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.7e-10 Score=85.06 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=39.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
..|+||++.+.+ .+.++|+|+||..||..|+... .+||+||+.|..
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGASWLG--------KRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTTCS--------SBCSSSCCBCCH
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHHHCC--------CcCcCcCchhCH
Confidence 679999999843 7888999999999999999753 469999998854
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=81.70 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=39.7
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+ .+.+ +|+|+||..||..|++.. ..||+||+++...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYYS--------NRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHHC--------SSCTTTCCCCCSS
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHcC--------CcCCCcCcccCcc
Confidence 679999999854 5565 999999999999999763 3599999998764
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=8.7e-10 Score=81.01 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=39.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.+.+ .+.++|||+||..||.+|+... ..+||+|++++...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQTECGHRFCESCMAALLSSS-------SPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESS-----CCCCSSSCCCCHHHHHHHHTTS-------SCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcC-----eeECCCCCHHHHHHHHHHHHhC-------cCCCCCCCcCCChh
Confidence 679999999854 4458999999999999999632 34699999998653
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.5e-10 Score=85.64 Aligned_cols=46 Identities=22% Similarity=0.573 Sum_probs=39.3
Q ss_pred CCcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
...|+||++.|.+ .+.++|+|+||..||..|++.. ..||+|++++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVVTKCRHYFCESCALEHFRAT--------PRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHHHC--------SBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHHCC--------CcCCCcCcccc
Confidence 3679999999844 6679999999999999999863 36999999985
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=82.54 Aligned_cols=52 Identities=15% Similarity=0.440 Sum_probs=42.1
Q ss_pred CCcccccccccccccCCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 019640 51 PPKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~ 113 (338)
...|+||++.|.+ .+.++ |+|+||..||..|++... ...||+||+++..+..
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 15 ELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESD------EHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHHHHSS------SSCCSSSCCSSCCTTT
T ss_pred CCCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHHHhcC------CCcCCCCCCcCCCccc
Confidence 3679999999854 66798 999999999999998642 3569999998765543
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.88 E-value=2.6e-09 Score=80.53 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=40.5
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
-.|+||++.|.+ .+.++|||+|+..||..|+... ..+||+|++++...
T Consensus 9 ~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~~~-------~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 9 FRCPISLELMKD-----PVIVSTGQTYERSSIQKWLDAG-------HKTCPKSQETLLHA 56 (78)
T ss_dssp SSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHTTT-------CCBCTTTCCBCSSC
T ss_pred CCCCCccccccC-----CEEcCCCCeecHHHHHHHHHHC-------cCCCCCCcCCCChh
Confidence 579999999844 7778999999999999999752 35699999998754
No 25
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=2.7e-09 Score=85.02 Aligned_cols=68 Identities=22% Similarity=0.398 Sum_probs=48.1
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCC-CcchhHHHHHHHh
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKD-SGSRLHSLLKEAI 129 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~i~d-~~Spl~~~Lre~l 129 (338)
..|+||++.+.+ .+.++|||+||..||..|+.... +...||+|+.++....-..+ .-..+.+.+++.+
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLLNQKK-----GPSQCPLCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHHSSS-----SSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHHHhCC-----CCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 569999998854 55689999999999999998642 23679999999876432211 1234555555543
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=1.9e-09 Score=78.97 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=40.3
Q ss_pred Cccccccc-ccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQA-VLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle-~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++ .|.+.. ...+.++|||+||..||++|+... ...||+|++++...
T Consensus 4 ~~C~IC~~~~~~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPS-LKLMVNVCGHTLCESCVDLLFVRG-------AGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSS-CCEEECTTCCCEEHHHHHHHHHTT-------SSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCc-cCeecCCCCCHhHHHHHHHHHHcC-------CCcCCCCCCccccc
Confidence 56999999 776643 123557999999999999998653 24699999998653
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.1e-10 Score=83.96 Aligned_cols=46 Identities=22% Similarity=0.564 Sum_probs=39.0
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.+. + +.++|+|+||..||..|+... .+||+||+++...
T Consensus 16 ~~C~IC~~~~~-----~-~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRA-----D-LILPCAHSFCQKCIDKWSDRH--------RNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCC-----S-EEETTTEEECHHHHHHSSCCC--------SSCHHHHHCTTCC
T ss_pred CCCeeCCcCcc-----C-cccCCCCcccHHHHHHHHHCc--------CcCCCcCCcccCC
Confidence 77999999873 3 778999999999999999742 4699999998754
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.87 E-value=2.6e-09 Score=87.55 Aligned_cols=50 Identities=20% Similarity=0.462 Sum_probs=41.6
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~ 113 (338)
..|+||++.|.+ .+.++|||.||..||..|+... .+.||+||+++.+...
T Consensus 53 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~ 102 (124)
T 3fl2_A 53 FQCICCQELVFR-----PITTVCQHNVCKDCLDRSFRAQ-------VFSCPACRYDLGRSYA 102 (124)
T ss_dssp TBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHHTT-------CCBCTTTCCBCCTTCC
T ss_pred CCCCcCChHHcC-----cEEeeCCCcccHHHHHHHHhHC-------cCCCCCCCccCCCCCC
Confidence 569999999854 6778999999999999999842 3579999999976433
No 29
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.86 E-value=3.9e-10 Score=94.55 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=0.0
Q ss_pred Cccccccccccc-------------ccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 52 PKCCQCQAVLEE-------------ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 52 ~~C~ICle~L~~-------------gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
.+|+||++.|.+ ++.-.++.++|+|+||..||+.||+.. .+||+||++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPLDNREW 110 (117)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCCCCCee
Confidence 689999999975 321122335899999999999999874 2499999984
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.85 E-value=1.1e-09 Score=91.80 Aligned_cols=46 Identities=26% Similarity=0.623 Sum_probs=39.0
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
..|+||++.|.+ .+.++|||.||..||..|+... ..||+||++|-.
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWMKRK--------IECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHTTTC--------SBCTTTCCBCCC
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHHHcC--------CcCCCCCCcCCC
Confidence 469999999843 7789999999999999999764 359999999853
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.85 E-value=4.1e-09 Score=81.74 Aligned_cols=50 Identities=16% Similarity=0.456 Sum_probs=40.9
Q ss_pred CCcccccccccccccCCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 51 PPKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
...|+||++.|.+ .+.++ |||+|+..||..|+.... .+.||+|++++...
T Consensus 13 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 13 ELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESD------EHTCPTCHQNDVSP 63 (92)
T ss_dssp TTEETTTTEECSS-----CEECTTTCCEECHHHHHHHHHHCT------TCCCTTTCCSSCCT
T ss_pred CCCCCCCChhhcC-----ceECCCCCCHHHHHHHHHHHHhcC------CCcCcCCCCcCCCc
Confidence 3679999999853 67888 999999999999997542 35799999997433
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.84 E-value=4.3e-09 Score=79.25 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=42.3
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.+.+ .+.++|+|+||..||..|+..... ......||.|++++...
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSADCNHSFCRACITLNYESNRN--TDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TSCTTTCSCCSS-----CEECTTSCCBCHHHHHHHHHHSBC--TTSCBCCTTTCCCCCTT
T ss_pred CCCcCCChhhCc-----ceeCCCCCHHHHHHHHHHHHhccC--CCCCCCCCCCCCcCCHH
Confidence 679999999854 567899999999999999987421 12356799999998754
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.7e-09 Score=76.79 Aligned_cols=43 Identities=23% Similarity=0.561 Sum_probs=35.6
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~C 104 (338)
..|+||++.|.+ .+.|+|||+||..||.+|++... ...+||+|
T Consensus 21 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~C 63 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSC-----GFFKCPLC 63 (63)
T ss_dssp CBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHHHCS-----SCCCCSCC
T ss_pred CCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHHcCC-----CCCcCcCC
Confidence 789999999854 67789999999999999998531 23579998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.81 E-value=3.6e-09 Score=83.41 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=39.5
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+ .+.+ +|||.||..||..|+... ..||.|++++..+
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSYK--------TQCPTCCVTVTEP 70 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTTC--------CBCTTTCCBCCGG
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHCC--------CCCCCCCCcCChh
Confidence 579999999854 5666 899999999999999853 4699999998753
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.80 E-value=2.6e-09 Score=86.33 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=42.2
Q ss_pred Ccccccccccccc--cCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+. +++.++.++|||+||+.||.+|++.. .+||+|++.+...
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 61 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTTTCCBCTTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCCCCCcCccc
Confidence 5699999999763 11356889999999999999999864 3699999988654
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5.5e-09 Score=78.62 Aligned_cols=53 Identities=25% Similarity=0.515 Sum_probs=41.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.+.+ .+.|+|+|+||..||..|+..... ......||.|++.+...
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTANHKKSML--DKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHHHHHHHH--TTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHHHHHhhc--CCCCCcCCCCCCccCHH
Confidence 679999999854 566899999999999999986210 01245799999998764
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5e-09 Score=74.27 Aligned_cols=43 Identities=23% Similarity=0.694 Sum_probs=35.0
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~C 104 (338)
..|+||++.+.+ .+.|+|+|+||..||.+|+.... ...+||+|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKE-----PVIIECGHNFCKACITRWWEDLE-----RDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSS-----CCCCSSCCCCCHHHHHHHTTSSC-----CSCCCSCC
T ss_pred CCCccCCcccCc-----cEeCCCCCccCHHHHHHHHHhcC-----CCCCCCCC
Confidence 679999999854 45689999999999999986522 24579998
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.76 E-value=2.8e-09 Score=79.99 Aligned_cols=54 Identities=22% Similarity=0.445 Sum_probs=42.1
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+ .+.|+|||+||..||..|+..... .......||.||+++..+
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNKEAVT-SMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCCCCSS
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHhccc-CCCCCCcCCCCCCcCCHh
Confidence 679999999854 556899999999999999976321 112356799999998753
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.74 E-value=5.2e-09 Score=84.53 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=41.7
Q ss_pred Ccccccccccccc--cCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+. .+...+.++|+|+||..||++|++.. .+||+||+++-+.
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 126 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTTTCCBCCGG
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCCCCCcCChh
Confidence 5699999999763 11245778999999999999999874 3599999998653
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.73 E-value=7.8e-09 Score=88.60 Aligned_cols=48 Identities=25% Similarity=0.600 Sum_probs=39.8
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+ .+.+ +|||+||..||..|+... ...||+|+.++...
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITALRSG-------NKECPTCRKKLVSK 103 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHHTT-------CCBCTTTCCBCCSG
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHHHHhC-------cCCCCCCCCcCCCc
Confidence 479999999864 5665 999999999999999852 34699999998654
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.70 E-value=1.8e-08 Score=86.48 Aligned_cols=49 Identities=22% Similarity=0.543 Sum_probs=41.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~ 112 (338)
..|+||++.|.+ .+.++|||+|+..||..|+... .+.||+||.++....
T Consensus 79 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 79 FMCVCCQELVYQ-----PVTTECFHNVCKDCLQRSFKAQ-------VFSCPACRHDLGQNY 127 (150)
T ss_dssp TBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHHTT-------CCBCTTTCCBCCTTC
T ss_pred CEeecCChhhcC-----CEEcCCCCchhHHHHHHHHHhC-------CCcCCCCCccCCCCC
Confidence 579999999854 6669999999999999999853 357999999998763
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.68 E-value=1.1e-08 Score=82.00 Aligned_cols=47 Identities=23% Similarity=0.676 Sum_probs=39.9
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+ .+.+ +|||+||..||..|+... ..||+|++.+...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYLETS--------KYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHTSC--------SBCTTTCCBSCSS
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHHHHHhC--------CcCcCCCcccccc
Confidence 569999999854 6676 999999999999999763 4699999998754
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.67 E-value=1.4e-08 Score=82.12 Aligned_cols=48 Identities=25% Similarity=0.715 Sum_probs=40.6
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+ .+.++|||+||..||..|+... +..||+|++++...
T Consensus 24 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVETSCKHLFCRICILRCLKVM-------GSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcC-----cEEcCCCCcccHHHHHHHHhHC-------cCcCCCCCCCCCHh
Confidence 579999999854 6668999999999999999863 34699999998764
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.65 E-value=5.4e-09 Score=84.47 Aligned_cols=46 Identities=26% Similarity=0.669 Sum_probs=39.3
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|+||++.|.+ .+.|+|||+||..||..|+... ...||+|++.+.
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEKA-------SLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCTT-------TSBCTTTCCBCH
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhHC-------cCCCCCCCcccC
Confidence 569999999853 7788999999999999999652 357999999986
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=1.9e-08 Score=78.20 Aligned_cols=47 Identities=21% Similarity=0.447 Sum_probs=37.9
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
..|+||.+.+..++ .. ..|+|.||..||.+||+.... -+||+|+++.
T Consensus 16 ~~C~IC~~~i~~g~--~C--~~C~h~fH~~Ci~kWl~~~~~------~~CP~Cr~~w 62 (74)
T 2ct0_A 16 KICNICHSLLIQGQ--SC--ETCGIRMHLPCVAKYFQSNAE------PRCPHCNDYW 62 (74)
T ss_dssp CBCSSSCCBCSSSE--EC--SSSCCEECHHHHHHHSTTCSS------CCCTTTCSCC
T ss_pred CcCcchhhHcccCC--cc--CCCCchhhHHHHHHHHHhcCC------CCCCCCcCcC
Confidence 78999999998653 22 299999999999999987532 3599999864
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.60 E-value=2e-08 Score=81.89 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=40.6
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+ .+.++|||+|+..||..|+.... .+||+||+++...
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAG-------HKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHC-------SBCTTTCCBCCGG
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHHHhhCC-------CCCCCCCCCcCHH
Confidence 679999999854 67789999999999999998642 3699999998764
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.52 E-value=7.4e-08 Score=74.78 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=40.1
Q ss_pred CcccccccccccccCCCeEEe--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++++...| ...+ +|||.|+..||..+... ..+.||.||+++...
T Consensus 12 ~~CpICle~~~~~d---~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 12 VECPLCMEPLEIDD---INFFPCTCGYQICRFCWHRIRTD-------ENGLCPACRKPYPED 63 (78)
T ss_dssp CBCTTTCCBCCTTT---TTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTTTCCBCSSC
T ss_pred CcCCccCccCcccc---ccccccCCCCCcCHHHHHHHHhc-------CCCCCCCCCCccCCC
Confidence 68999999996654 4444 49999999999999854 246799999998764
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.47 E-value=6.2e-08 Score=78.90 Aligned_cols=45 Identities=33% Similarity=0.867 Sum_probs=38.3
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.|.+ .+.+ +|||+|+..||..|+. ..||+|++++...
T Consensus 23 ~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~----------~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 23 LRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG----------TGCPVCYTPAWIQ 68 (117)
T ss_dssp TSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT----------TBCSSSCCBCSCS
T ss_pred CCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc----------CCCcCCCCcCccc
Confidence 679999999843 6777 9999999999999997 2499999998643
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.39 E-value=1.4e-07 Score=84.83 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=51.2
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchhHHHHHHHhhh
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~i~d~~Spl~~~Lre~l~q 131 (338)
-.|+||++.|.+ .|.++|||+|-+.||..|+... +.+||+|+.++-+..-+ .+-.+.+.+.+.+.+
T Consensus 209 ~~c~i~~~~~~d-----Pv~~~~gh~f~~~~i~~~~~~~-------~~~cP~~~~~~~~~~l~--~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 209 LCGKISFELMRE-----PCITPSGITYDRKDIEEHLQRV-------GHFNPVTRSPLTQEQLI--PNLAMKEVIDAFISE 274 (281)
T ss_dssp TBCTTTCSBCSS-----EEECSSCCEEETTHHHHHHHHT-------CSSCTTTCCCCCGGGCE--ECHHHHHHHHHHHTT
T ss_pred cCCcCcCCHhcC-----CeECCCCCEECHHHHHHHHHHC-------CCCCcCCCCCCchhcCc--ccHHHHHHHHHHHHH
Confidence 579999999854 8889999999999999999864 23499999998643212 123445555555566
Q ss_pred hhhh
Q 019640 132 TGLE 135 (338)
Q Consensus 132 ~~WA 135 (338)
.+|+
T Consensus 275 ~~~~ 278 (281)
T 2c2l_A 275 NGWV 278 (281)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 6665
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.35 E-value=3.7e-07 Score=73.43 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=50.2
Q ss_pred CcccccccccccccCCCeEEecCC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchhHHHHHHHhh
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIM 130 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~-HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~i~d~~Spl~~~Lre~l~ 130 (338)
-.|+||++.|.+ .|.++|| |+|-+.||..|+... .+||.|+.++-.. ++. .+-.|...+.+...
T Consensus 23 ~~CpI~~~~m~d-----PV~~~cG~htf~r~cI~~~l~~~--------~~cP~~~~~l~~~-~L~-pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 23 FLDPIMSTLMCD-----PVVLPSSRVTVDRSTIARHLLSD--------QTDPFNRSPLTMD-QIR-PNTELKEKIQRWLA 87 (98)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHTTTS--------CBCTTTCSBCCTT-TSE-ECHHHHHHHHHHHH
T ss_pred cCCcCccccccC-----CeECCCCCeEECHHHHHHHHHhC--------CCCCCCCCCCChh-hce-EcHHHHHHHHHHHH
Confidence 679999999854 8899999 999999999999852 3699999998654 321 12334444444545
Q ss_pred hhhhhh
Q 019640 131 LTGLEK 136 (338)
Q Consensus 131 q~~WAr 136 (338)
+..|++
T Consensus 88 ~~~~~~ 93 (98)
T 1wgm_A 88 ERKQQS 93 (98)
T ss_dssp HSTTCS
T ss_pred Hcchhh
Confidence 555543
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.33 E-value=6.7e-08 Score=69.65 Aligned_cols=46 Identities=33% Similarity=0.681 Sum_probs=37.5
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~ 113 (338)
..|+||++.|.+ .+.|+|+|+|+..||..| ...||+||+.+..+.+
T Consensus 7 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~-----------~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 7 LRCQQCQAEAKC-----PKLLPCLHTLCSGCLEAS-----------GMQCPICQAPWPLGAD 52 (56)
T ss_dssp SSCSSSCSSCBC-----CSCSTTSCCSBTTTCSSS-----------SSSCSSCCSSSSCCSS
T ss_pred CCceEeCCccCC-----eEEcCCCCcccHHHHccC-----------CCCCCcCCcEeecCCc
Confidence 579999999854 677999999999999873 2359999999876543
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.33 E-value=2.9e-07 Score=91.02 Aligned_cols=48 Identities=31% Similarity=0.518 Sum_probs=40.0
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|+||++.+. +++.++|||+||..|+..|+... ...||+||+++-..
T Consensus 333 ~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~~~-------~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQESE-------GQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHHHT-------CSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHhcC-------CCCCCCCCCccCCc
Confidence 57999999873 37889999999999999999842 23599999988653
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.32 E-value=9.5e-08 Score=81.29 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=40.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
-.|+||++.|.+ .+.++|||+|+..||..|+... ...||+||.++...
T Consensus 32 ~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 32 YLCSACRNVLRR-----PFQAQCGHRYCSFCLASILSSG-------PQNCAACVHEGIYE 79 (141)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHGGGS-------CEECHHHHHTTCCC
T ss_pred cCCCCCChhhcC-----cEECCCCCccCHHHHHHHHhcC-------CCCCCCCCCccccc
Confidence 679999999854 6778999999999999999753 34699999987654
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.25 E-value=3.8e-07 Score=69.10 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=35.3
Q ss_pred CcccccccccccccCCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|+||++.+. +++.|+|||+ |...|+..| ..||+||++|-
T Consensus 25 ~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~------------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNI-----AIVFVPCGHLVTCKQCAEAV------------DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBC-----CEEEETTCCBCCCHHHHTTC------------SBCTTTCCBCS
T ss_pred CCCCCCCCCCC-----CEEEcCCCChhHHHHhhhcC------------ccCCCcCcCcc
Confidence 67999999874 3788999999 999999998 14999999875
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.20 E-value=6.8e-07 Score=76.66 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=40.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
-.|+||++.|.+ .+.++|||+|...||.+|+.... .+||+||.++...
T Consensus 19 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAG-------HKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHC-------SBCTTTCCBCCGG
T ss_pred CCCCCCChhhcC-----cEECCCCCHHHHHHHHHHHHhCC-------CCCCCCccCcchh
Confidence 679999999854 66789999999999999998642 3699999998754
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.18 E-value=1.5e-06 Score=67.79 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=40.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
-.|+||++.|.+ .|.++|||+|-+.||..|+... .+||.|+.++-..
T Consensus 15 ~~CpI~~~~m~d-----PV~~~cGhtf~r~~I~~~l~~~--------~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 15 FRDPLMDTLMTD-----PVRLPSGTVMDRSIILRHLLNS--------PTDPFNRQMLTES 61 (85)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHC--------SBCTTTCCBCCGG
T ss_pred eECcccCchhcC-----CeECCCCCEECHHHHHHHHhcC--------CCCCCCcCCCChH
Confidence 679999999854 8899999999999999999863 4699999987643
No 57
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.17 E-value=1.6e-06 Score=69.98 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=40.6
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
-.|+||++.|.+ .|.++|||+|-+.||..|+... .+||.|+.++-..
T Consensus 30 ~~CpI~~~~m~d-----PV~~~cGhtf~r~~I~~~l~~~--------~~cP~~~~~l~~~ 76 (100)
T 2kre_A 30 FRDPLMDTLMTD-----PVRLPSGTIMDRSIILRHLLNS--------PTDPFNRQTLTES 76 (100)
T ss_dssp TBCTTTCSBCSS-----EEEETTTEEEEHHHHHHHTTSC--------SBCSSSCCBCCTT
T ss_pred hCCcCccCcccC-----CeECCCCCEEchHHHHHHHHcC--------CCCCCCCCCCChh
Confidence 679999999854 8899999999999999999752 4699999998654
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.14 E-value=4.2e-07 Score=89.28 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=40.5
Q ss_pred CcccccccccccccCCCeE----EecCCCccCHHHHHHHHhcCCCCC---CCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETT----RLGCLHVIHTSCLVSHIKSFPPHT---APAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evv----RL~C~HvFH~~CLd~WL~~~p~nT---aPagy~CP~Cr~~I~ 109 (338)
..|+||.+.+.+++ +... ...|+|.||..||.+||++.+... .-..-.||.|+++|-
T Consensus 309 ~ECaICys~~l~~g-~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGG-EVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTC-CCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCC-CCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 78999999998743 1221 247999999999999998753210 001235999999885
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=2e-06 Score=67.99 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=38.9
Q ss_pred CcccccccccccccCCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCC--CCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPL--CSTT 107 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTaPagy~CP~--Cr~~ 107 (338)
-.|+||++.|.+ .|.++ |||+|-..||..|+..... ....++||+ |++.
T Consensus 8 ~~CPI~~~~~~d-----PV~~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 8 FTCPITKEEMKK-----PVKNKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHT 59 (94)
T ss_dssp CBCTTTCSBCSS-----EEEESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCC
T ss_pred eECcCcCchhcC-----CEEcCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCccc
Confidence 679999999854 88895 9999999999999986411 013567999 9876
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.10 E-value=1.8e-06 Score=64.10 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=34.6
Q ss_pred CcccccccccccccCCCeEEecCC--C---ccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCL--H---VIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~--H---vFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
..|.||+++. ++ ...+||. | .||.+||++|+.... ..+||+|+..+
T Consensus 7 ~~CrIC~~~~--~~---~l~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~~C~~~~ 57 (60)
T 1vyx_A 7 PVCWICNEEL--GN---ERFRACGCTGELENVHRSCLSTWLTISR------NTACQICGVVY 57 (60)
T ss_dssp CEETTTTEEC--SC---CCCCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCTTTCCBC
T ss_pred CEeEEeecCC--CC---ceecCcCCCCchhhhHHHHHHHHHHhCC------CCccCCCCCee
Confidence 6899999872 22 3357865 4 999999999998642 23699999875
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.09 E-value=2.2e-06 Score=76.50 Aligned_cols=70 Identities=9% Similarity=0.047 Sum_probs=51.0
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchhHHHHHHHhhh
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~~i~d~~Spl~~~Lre~l~q 131 (338)
-.|+||++.|.+ .|.++|||+|-..||..|+... +.+||.|+.++-.. ++. .+-.|.+.+.+...+
T Consensus 107 f~CPI~~elm~D-----PV~~~~Ghtfer~~I~~~l~~~-------~~tcP~t~~~l~~~-~L~-pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 107 LCGKISFELMRE-----PCITPSGITYDRKDIEEHLQRV-------GHFDPVTRSPLTQD-QLI-PNLAMKEVIDAFIQE 172 (179)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG-GCE-ECHHHHHHHHHHHHH
T ss_pred hcccCccccCCC-----CeECCCCCEECHHHHHHHHHhC-------CCCCCCCcCCCChh-hCc-chHHHHHHHHHHHHH
Confidence 679999999854 8889999999999999999863 23599999988553 221 123445555555566
Q ss_pred hhhh
Q 019640 132 TGLE 135 (338)
Q Consensus 132 ~~WA 135 (338)
.+|+
T Consensus 173 ~~~~ 176 (179)
T 2f42_A 173 NGWV 176 (179)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 6665
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.03 E-value=2.9e-06 Score=62.83 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=36.3
Q ss_pred CcccccccccccccCCCeEEe--cCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRL--GCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~Hv-FH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|.||++...+ ++.+ +|||+ |=.+|+..|.+.. ..||+||++|.
T Consensus 9 ~~C~IC~~~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~~--------~~CPiCR~~i~ 56 (64)
T 2vje_A 9 EPCVICQGRPKN-----GCIVHGKTGHLMACFTCAKKLKKRN--------KPCPVCRQPIQ 56 (64)
T ss_dssp SCCTTTSSSCSC-----EEEEETTEEEEEECHHHHHHHHHTT--------CCCTTTCCCCC
T ss_pred CCCCcCCCCCCC-----EEEECCCCCChhhHHHHHHHHHHcC--------CcCCCcCcchh
Confidence 579999998644 4444 99999 6799999999753 35999999884
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=2.1e-06 Score=64.92 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=34.3
Q ss_pred CcccccccccccccCCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
..|+||++.+.+ ++.++|||+ |...|+..+ ..||+||++|..
T Consensus 26 ~~C~IC~~~~~~-----~~~~pCgH~~~C~~C~~~~------------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA-----IVFVPCGHLVTCKQCAEAV------------DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC-----BCCSSSCCCCBCHHHHHHC------------SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC-----EEEecCCCHHHHHHHhhCC------------CCCccCCceecC
Confidence 579999998743 777899999 999999642 249999999864
No 64
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.97 E-value=3.4e-06 Score=62.31 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=36.6
Q ss_pred CcccccccccccccCCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|.||++...+. .++-++|||+ |-++|+..|.+.. ..||+||++|-
T Consensus 8 ~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~--------~~CPiCR~~i~ 55 (63)
T 2vje_B 8 KPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAG--------ASCPICKKEIQ 55 (63)
T ss_dssp SBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTT--------CBCTTTCCBCC
T ss_pred CCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhC--------CcCCCcCchhh
Confidence 6799999986542 1233499998 9999999998653 36999999883
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.95 E-value=6.4e-07 Score=70.25 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=39.8
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCC--CCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPL--CSTT 107 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~--Cr~~ 107 (338)
..|+||++.+... +.++| +|+|.|..+|+..|+...-.........||. |+..
T Consensus 6 ~~C~IC~~~~~~~---~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVE---QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGG---GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccc---cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5699999998765 47777 6999999999999987531111112468999 9987
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=1.6e-05 Score=59.77 Aligned_cols=42 Identities=24% Similarity=0.551 Sum_probs=34.5
Q ss_pred CcccccccccccccCCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
..|.||++... +++-|+|+|+ |.+.|+... ..||+||++|..
T Consensus 16 ~~C~IC~~~~~-----~~v~~pCgH~~~C~~C~~~~------------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 16 KDCVVCQNGTV-----NWVLLPCRHTCLCDGCVKYF------------QQCPMCRQFVQE 58 (68)
T ss_dssp SCCSSSSSSCC-----CCEETTTTBCCSCTTHHHHC------------SSCTTTCCCCCC
T ss_pred CCCCCcCcCCC-----CEEEECCCChhhhHHHHhcC------------CCCCCCCcchhc
Confidence 67999998753 4888999999 999999831 249999999864
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.56 E-value=2.2e-05 Score=60.51 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=34.6
Q ss_pred CcccccccccccccCCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|.||++.+. +++.++|||+ |-..|+..|. .||+||++|-
T Consensus 19 ~~C~IC~~~~~-----~~v~~pCgH~~~C~~C~~~~~------------~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEI-----NSTFCPCGHTVCCESCAAQLQ------------SCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBC-----CEEEETTCBCCBCHHHHTTCS------------BCTTTCCBCC
T ss_pred CEeEEeCcccC-----cEEEECCCCHHHHHHHHHhcC------------cCCCCCchhh
Confidence 57999998863 3888999999 9999998772 4999999874
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.45 E-value=2.6e-05 Score=75.55 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=35.6
Q ss_pred CcccccccccccccCCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|+||++.+. +++.|+|||+ |...|+..| ..||+||++|-
T Consensus 296 ~~C~IC~~~~~-----~~v~lpCgH~~fC~~C~~~~------------~~CP~CR~~i~ 337 (345)
T 3t6p_A 296 RTCKVCMDKEV-----SVVFIPCGHLVVCQECAPSL------------RKCPICRGIIK 337 (345)
T ss_dssp CBCTTTSSSBC-----CEEEETTCCEEECTTTGGGC------------SBCTTTCCBCC
T ss_pred CCCCccCCcCC-----ceEEcCCCChhHhHHHHhcC------------CcCCCCCCCcc
Confidence 67999999984 3888999999 999999988 13999999884
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.30 E-value=7.7e-05 Score=70.60 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=39.9
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCC--CCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPL--CSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~--Cr~~I~P 110 (338)
-.|+||++.|.+ .|+. .|||+|-..||..|++.. ....||+ |++.+-.
T Consensus 182 l~CPIcl~~f~D-----PVts~~CGHsFcR~cI~~~~~~~------~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 182 LTCPITCKPYEA-----PLISRKCNHVFDRDGIQNYLQGY------TTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCTTTSSBCSS-----EEEESSSCCEEEHHHHHHHSTTC------SCEECSGGGCSCEECG
T ss_pred eECcCccCcccC-----CeeeCCCCCcccHHHHHHHHHhC------CCCCCCcccccCcCch
Confidence 789999999944 7775 999999999999999753 2357999 9997754
No 70
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.16 E-value=0.00022 Score=65.83 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=39.1
Q ss_pred CCcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
...|.+|.+-+..|- .=-.|+|.||..|+..|++... ..+||.|+.+ ||.
T Consensus 180 i~~C~iC~~iv~~g~----~C~~C~~~~H~~C~~~~~~~~~------~~~CP~C~~~-W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ----SCETCGIRMHLPCVAKYFQSNA------EPRCPHCNDY-WPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCE----ECSSSCCEECHHHHHHHTTTCS------SCBCTTTCCB-CCS
T ss_pred CCcCcchhhHHhCCc----ccCccChHHHHHHHHHHHHhCC------CCCCCCCCCC-CCC
Confidence 378999999987642 2224999999999999998653 3469999997 775
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.15 E-value=0.00019 Score=53.15 Aligned_cols=46 Identities=13% Similarity=0.051 Sum_probs=38.8
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
-.|+||++.+.+ .+.+ .|||+|=++||.+|++.. -+||+++.++-.
T Consensus 4 ~~CpIs~~~m~d-----PV~~~~sG~~yer~~I~~~l~~~--------~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR-----PVLSPKSRTIFEKSLLEQYVKDT--------GNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS-----EEEETTTTEEEEHHHHHHHHHHH--------SBCTTTCCBCCG
T ss_pred EEecCCCCCCCC-----CEEeCCCCcEEcHHHHHHHHHhC--------CCCcCCcCCCCh
Confidence 459999999963 7777 899999999999999864 149999998854
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.40 E-value=0.0027 Score=52.38 Aligned_cols=45 Identities=29% Similarity=0.573 Sum_probs=36.1
Q ss_pred cccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 53 KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
-|.+|.-++.. -.| ++|+|+|=.+|+..|.++. ...||.|+.+|.
T Consensus 3 fC~~C~~Pi~i-----ygRmIPCkHvFCydCa~~~~~~~-------~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV-----YGRMIPCKHVFCYDCAILHEKKG-------DKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE-----EEEEETTCCEEEHHHHHHHHHTT-------CCBCTTTCCBCS
T ss_pred ecCccCCCeEE-----EeeeccccccHHHHHHHHHHhcc-------CCCCcCcCCeee
Confidence 48888888855 445 4999999999999998653 235999999885
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.55 E-value=0.068 Score=40.28 Aligned_cols=50 Identities=26% Similarity=0.536 Sum_probs=37.4
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|.||.+ .+ +++. -.|...||..||+..|...|. ....||.|.....|.
T Consensus 13 ~~C~vC~~---~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~----g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 13 ARCGVCGD---GT---DVLRCTHCAAAFHWRCHFPAGTSRPG----TGLRCRSCSGDVTPA 63 (66)
T ss_dssp CCCTTTSC---CT---TCEECSSSCCEECHHHHCTTTCCCCS----SSCCCTTTTTCCCCC
T ss_pred CCcCCCCC---CC---eEEECCCCCCceecccCCCccCcCCC----CCEECccccCCCccC
Confidence 67999974 22 3333 379999999999999887664 367899998776554
No 74
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.81 E-value=0.34 Score=33.89 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=32.0
Q ss_pred cccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 53 KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
.|.||...=..+ +.+. -.|...||..|++.=+...|. ....||.|..
T Consensus 2 ~C~vC~~~~~~~---~ll~Cd~C~~~~H~~Cl~p~l~~~P~----g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD---KLILCDECNKAFHLFCLRPALYEVPD----GEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS---CCEECTTTCCEECHHHHCTTCCSCCS----SCCSCTTTSC
T ss_pred CCCCCCCCCCCC---CEEECCCCChhhCcccCCCCcCCCCC----CcEECcCccc
Confidence 488888763222 2333 379999999999875555442 3678999965
No 75
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=83.99 E-value=1.7 Score=30.24 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHH-HHHHHHHHHHHHhh
Q 019640 298 TDPRKILLLIAIMA-CMATMGILYYRLSQ 325 (338)
Q Consensus 298 ~dprkill~~a~~s-c~~Tm~llY~rla~ 325 (338)
..|-.+|++|+.|+ -+||++||+|-+-+
T Consensus 8 s~p~i~lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 8 SEPEITLIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999 67899999986543
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.58 E-value=0.59 Score=34.23 Aligned_cols=46 Identities=26% Similarity=0.552 Sum_probs=33.2
Q ss_pred CCcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
...|.+|... + +.+. -.|.-.||..||+.-+...|. ....||.|.+
T Consensus 11 ~~~C~vC~~~---g---~ll~CD~C~~~fH~~Cl~p~l~~~p~----g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG---G---EIILCDTCPRAYHMVCLDPDMEKAPE----GKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC---S---SEEECSSSSCEEEHHHHCTTCCSCCC----SSCCCTTGGG
T ss_pred CCCCccCCCC---C---cEEECCCCChhhhhhccCCCCCCCCC----CceECccccc
Confidence 3779999863 3 2444 279999999999986655443 3678999964
No 77
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=79.72 E-value=0.2 Score=40.41 Aligned_cols=34 Identities=24% Similarity=0.581 Sum_probs=24.5
Q ss_pred cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 73 GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 73 ~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
.|...||..|+.-..+.......+.+|.||.|..
T Consensus 80 ~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 80 ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 7999999999976543333334567899999963
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.08 E-value=0.59 Score=34.26 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=32.9
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
..|.+|... + +.+. -.|...||..||+.-+...|. ....||.|....
T Consensus 10 ~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~----g~W~C~~C~~~~ 57 (61)
T 1mm2_A 10 EFCRVCKDG---G---ELLCCDTCPSSYHIHCLNPPLPEIPN----GEWLCPRCTCPA 57 (61)
T ss_dssp SSCTTTCCC---S---SCBCCSSSCCCBCSSSSSSCCSSCCS----SCCCCTTTTTTC
T ss_pred CcCCCCCCC---C---CEEEcCCCCHHHcccccCCCcCcCCC----CccCChhhcCch
Confidence 679999852 2 2332 379999999999976655443 357899997643
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.08 E-value=2.8 Score=33.78 Aligned_cols=50 Identities=28% Similarity=0.541 Sum_probs=31.9
Q ss_pred CCcccccccccccccCCCeEE-ecCCCccCHHHHHHH--HhcC-------CCCCCCCCCCCCCCC
Q 019640 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSH--IKSF-------PPHTAPAGYVCPLCS 105 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~W--L~~~-------p~nTaPagy~CP~Cr 105 (338)
+..|.||..-= .+ +... -.|+-+||..||.+. ++.. .++| -.|..||-|.
T Consensus 15 D~~C~VC~~~t-~~---~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T-~~GWSC~~Ce 74 (89)
T 1wil_A 15 DEMCDVCEVWT-AE---SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHT-ETGWSCHYCD 74 (89)
T ss_dssp SCCCTTTCCCC-SS---CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSS-SSSCCCTTTC
T ss_pred CcccCcccccc-cc---ceeccccccccccHhhcccccccccHHHHHHHHccCC-CCCccccccc
Confidence 37899997542 22 1222 369999999999997 2111 1122 2589999993
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=72.63 E-value=0.76 Score=40.72 Aligned_cols=49 Identities=29% Similarity=0.643 Sum_probs=34.8
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
..|.+|... | +.+-= .|...||..|++.-+...|. ....||.|+..--+
T Consensus 8 ~~C~~C~~~---g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~----~~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 8 DWCAVCQNG---G---DLLCCEKCPKVFHLTCHVPTLLSFPS----GDWICTFCRDIGKP 57 (207)
T ss_dssp SSBTTTCCC---E---EEEECSSSSCEECTTTSSSCCSSCCS----SCCCCTTTSCSSSC
T ss_pred CCCCCCCCC---C---ceEEcCCCCCccCCccCCCCCCCCCC----CCEEeCceeCcccc
Confidence 679999743 3 22222 69999999999887766543 35789999876543
No 81
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.51 E-value=2.2 Score=33.96 Aligned_cols=60 Identities=22% Similarity=0.448 Sum_probs=36.1
Q ss_pred ecccccccCCCCCC-CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 38 TYSEWVIDGEYDWP-PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 38 sYlqWL~Dsdyd~~-~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
.|.+=-.|.++..+ ..| ||.....++ ..+.= .|.--||..|+.- +....|..|.||.|+.
T Consensus 14 ~~~~~~edg~~~~d~vrC-iC~~~~~~~---~mi~Cd~C~~w~H~~C~~~-----~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 14 LYFQGSEDGSYGTDVTRC-ICGFTHDDG---YMICCDKCSVWQHIDCMGI-----DRQHIPDTYLCERCQP 75 (98)
T ss_dssp -----CTTCCCCCCBCCC-TTSCCSCSS---CEEEBTTTCBEEETTTTTC-----CTTSCCSSBCCTTTSS
T ss_pred ccccCCccCCCCCCCEEe-ECCCccCCC---cEEEcCCCCCcCcCcCCCC-----CccCCCCCEECCCCcC
Confidence 34454455555433 456 898775444 23332 7999999999963 2234566899999963
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=71.84 E-value=1.1 Score=38.90 Aligned_cols=49 Identities=31% Similarity=0.659 Sum_probs=35.1
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
..|.+|... | +.+- =.|.-.||..|++.-+...|. +...||.|+..--|
T Consensus 5 ~~C~~C~~~---g---~ll~Cd~C~~~~H~~C~~p~l~~~p~----~~W~C~~C~~~~~~ 54 (184)
T 3o36_A 5 DWCAVCQNG---G---ELLCCEKCPKVFHLSCHVPTLTNFPS----GEWICTFCRDLSKP 54 (184)
T ss_dssp SSCTTTCCC---S---SCEECSSSSCEECTTTSSSCCSSCCS----SCCCCTTTSCSSSC
T ss_pred CccccCCCC---C---eeeecCCCCcccCccccCCCCCCCCC----CCEECccccCcccc
Confidence 569999743 3 2332 269999999999887765543 35789999886654
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.59 E-value=0.33 Score=34.83 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=32.3
Q ss_pred CCcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
...|.+|... + +.+. -.|.-.||..||+.-+...|. ....||.|..
T Consensus 9 ~~~C~vC~~~---g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~----g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---G---QLLMCDTCSRVYHLDCLDPPLKTIPK----GMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---S---CCEECSSSSCEECSSSSSSCCCSCCC----SSCCCHHHHC
T ss_pred CCCCccCCCC---C---eEEEcCCCCcceECccCCCCcCCCCC----CceEChhhhC
Confidence 4779999874 3 2333 379999999999976655442 3567888853
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.30 E-value=0.63 Score=37.33 Aligned_cols=82 Identities=26% Similarity=0.482 Sum_probs=44.9
Q ss_pred ccCcccccCCCcceeeeecccccccCCCCCC--CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCC
Q 019640 21 VCGECICFPEHQICVVRTYSEWVIDGEYDWP--PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPA 97 (338)
Q Consensus 21 VCe~Civ~~~H~~CvVqsYlqWL~Dsdyd~~--~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPa 97 (338)
.|..|-. .=|..|+.-... -+.+.++.=+ ..|.+|...-.+. .++. -.|...||..||+.-+...|. .
T Consensus 24 ~C~~C~~-~~H~~Cl~~~~~-~~~~~~W~C~~C~~C~~C~~~~~~~---~ll~Cd~C~~~yH~~Cl~ppl~~~P~----g 94 (111)
T 2ysm_A 24 FCTTCGQ-HYHGMCLDIAVT-PLKRAGWQCPECKVCQNCKQSGEDS---KMLVCDTCDKGYHTFCLQPVMKSVPT----N 94 (111)
T ss_dssp ECSSSCC-EECTTTTTCCCC-TTTSTTCCCTTTCCCTTTCCCSCCT---TEEECSSSCCEEEGGGSSSCCSSCCS----S
T ss_pred ECCCCCC-CcChHHhCCccc-cccccCccCCcCCcccccCccCCCC---CeeECCCCCcHHhHHhcCCccccCCC----C
Confidence 4555653 457777744321 1222222101 2466666542221 2222 279999999999876665543 3
Q ss_pred CCCCCCCCCCccCC
Q 019640 98 GYVCPLCSTTIWPP 111 (338)
Q Consensus 98 gy~CP~Cr~~I~P~ 111 (338)
...||.|......+
T Consensus 95 ~W~C~~C~~c~~g~ 108 (111)
T 2ysm_A 95 GWKCKNCRICISGP 108 (111)
T ss_dssp CCCCHHHHCCSCSC
T ss_pred CcCCcCCcCcCCCC
Confidence 67899997654433
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=68.72 E-value=2 Score=32.13 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=33.6
Q ss_pred CCcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 51 PPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
...|.+|...-. ++ ..+.- .|.--||..|+.--+...+ ...|.||.|...+
T Consensus 18 ~~~C~~C~~~~~-~~--~mi~CD~C~~wfH~~Cv~~~~~~~~----~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPDD-GS--PMIGCDDCDDWYHWPCVGIMAAPPE----EMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCCS-SC--CEEECSSSSSEEEHHHHTCSSCCCS----SSCCCCTTTHHHH
T ss_pred CcCCCCCCCCCC-CC--CEEEcCCCCcccccccCCCCccCCC----CCCEEChhccCch
Confidence 356999988742 21 23332 7999999999975433221 2578999996654
No 86
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=67.60 E-value=3.9 Score=32.86 Aligned_cols=50 Identities=28% Similarity=0.456 Sum_probs=36.2
Q ss_pred CCcccccccccccccCCCeEEe--cCCCccCHHHHHHHHhcCCCCCC---CCCCCCCC
Q 019640 51 PPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTA---PAGYVCPL 103 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~~p~nTa---Pagy~CP~ 103 (338)
+-.|.+|.+.|++.. -|.- .=+|-|-..|-...++++-.++. |.|-+||+
T Consensus 15 ~l~CtlC~erLEdtH---FVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL 69 (93)
T 2cs3_A 15 PLCCTICHERLEDTH---FVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPL 69 (93)
T ss_dssp SCCCSSSCSCCSSTT---SEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBC
T ss_pred eeEeecchhhhccCc---eeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCcccc
Confidence 467999999998864 5554 35899999999999988754432 44444444
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.45 E-value=2 Score=34.31 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=32.3
Q ss_pred CCcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
+..|.+|.+.=+.. +.+. -.|...||..||+..+...+ .....||.|..
T Consensus 7 ~~~C~~C~~~g~~~---~ll~C~~C~~~~H~~Cl~~~~~~~~----~~~W~C~~C~~ 56 (111)
T 2ysm_A 7 GANCAVCDSPGDLL---DQFFCTTCGQHYHGMCLDIAVTPLK----RAGWQCPECKV 56 (111)
T ss_dssp CSCBTTTCCCCCTT---TSEECSSSCCEECTTTTTCCCCTTT----STTCCCTTTCC
T ss_pred CCCCcCCCCCCCCc---CCeECCCCCCCcChHHhCCcccccc----ccCccCCcCCc
Confidence 36899998762211 1233 37999999999998764322 24677887753
No 88
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=64.99 E-value=1.5 Score=31.88 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=33.8
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
..|++|..+..++. ..+. -.|..=||..|+.--.... ..+..|.||.|+.
T Consensus 7 ~~C~~C~~~~~~~~--~mI~Cd~C~~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAADE--FWICCDLCEMWFHGKCVKITPARA---EHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCSSS--CEEECSSSCCEEETTTTTCCTTGG---GGCSSCCCHHHHT
T ss_pred CCCCCCCCccCCCC--CEEEccCCCCCCCccccCcChhHh---cCCCcEECCCCcC
Confidence 67999999875432 3444 2799999999985432211 0146799999965
No 89
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=63.80 E-value=1.1 Score=39.85 Aligned_cols=54 Identities=19% Similarity=0.488 Sum_probs=34.8
Q ss_pred CcccccccccccccC-CCeEEe-cCCCccCHHHHHHH------HhcCCCCCCCCCCCCCCCCCCc
Q 019640 52 PKCCQCQAVLEEESG-SETTRL-GCLHVIHTSCLVSH------IKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 52 ~~C~ICle~L~~gD~-~evvRL-~C~HvFH~~CLd~W------L~~~p~nTaPagy~CP~Cr~~I 108 (338)
..|+||...+.+++. ...+.- .|..-||..|+.-- +...|.+ ..|.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~---~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPES---VAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHH---HCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCC---CeeECcCCCCCC
Confidence 569999999987641 113333 69999999998421 1111100 268999997753
No 90
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.41 E-value=1.7 Score=35.09 Aligned_cols=48 Identities=17% Similarity=0.503 Sum_probs=30.8
Q ss_pred cccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 53 KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
.|.+|...=.+.+ ..+- -.|...||..||+.-|...|. ....||.|+.
T Consensus 63 ~C~vC~~~~~~~~--~ll~Cd~C~~~yH~~Cl~p~l~~~P~----~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNAD--NMLFCDSCDRGFHMECCDPPLTRMPK----GMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTC--CCEECTTTCCEECGGGCSSCCSSCCS----SCCCCTTTSC
T ss_pred ccccccCcCCCcc--ceEEcCCCCCeeecccCCCCCCCCCC----CCeECCCCCC
Confidence 4666765421211 2222 269999999999877766543 3578999974
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.94 E-value=2.3 Score=33.86 Aligned_cols=46 Identities=22% Similarity=0.563 Sum_probs=33.2
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~ 107 (338)
..|.+|... | +.+. -.|.-.||..||+.=+...|. ....||.|...
T Consensus 26 ~~C~vC~~~---g---~LL~CD~C~~~fH~~Cl~PpL~~~P~----g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKP---G---DLVMCNQCEFCFHLDCHLPALQDVPG----EEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSS---S---CCEECTTSSCEECTTSSSTTCCCCCS----SSCCCCSCCCC
T ss_pred CcCcCcCCC---C---CEEECCCCCCceecccCCCCCCCCcC----CCcCCccccCC
Confidence 569999864 3 2333 279999999999887765543 35689999753
No 92
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=59.70 E-value=2.3 Score=32.02 Aligned_cols=48 Identities=23% Similarity=0.575 Sum_probs=30.3
Q ss_pred cccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 53 KCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
.|.+|...=..+ +.+.- .|...||..||+.=|...|.. ....||.|..
T Consensus 20 ~C~~C~~~~~~~---~ll~CD~C~~~yH~~Cl~Ppl~~~P~g---~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSE---DEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG---GEEECTTTCCEEEGGGSSSCCSSCCSS---SCCCCTTTSC
T ss_pred CCcCCCCcCCCC---CEEEcCCCCCceecccCCCCcCCCCCC---CCcCCcCccC
Confidence 366776542222 23332 699999999998766554421 1467999964
No 93
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=59.62 E-value=2 Score=37.90 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=32.7
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
..|.+|... |+ .+.=-.|--.||..|++.=+...|. +...||.|...-
T Consensus 3 ~~C~~C~~~---g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~----g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP---GD--LVMCNQCEFCFHLDCHLPALQDVPG----EEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC---SS--CCCCTTTCCBCCSTTSTTCCSSCCC----TTCCTTTTSCSC
T ss_pred CcCccCCCC---Cc--eeECCCCCchhccccCCCCcccCCC----CCCCCcCccCCC
Confidence 569999843 32 2222379999999999876655443 356799998653
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=58.60 E-value=1 Score=32.57 Aligned_cols=46 Identities=26% Similarity=0.633 Sum_probs=32.3
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~ 107 (338)
..|.+|... | +.+. =.|.-.||..|++.-+...|. ....||.|...
T Consensus 6 ~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~----g~W~C~~C~~~ 52 (60)
T 2puy_A 6 DFCSVCRKS---G---QLLMCDTCSRVYHLDCLDPPLKTIPK----GMWICPRCQDQ 52 (60)
T ss_dssp SSCTTTCCC---S---SCEECSSSSCEECGGGSSSCCSSCCC----SCCCCHHHHHH
T ss_pred CCCcCCCCC---C---cEEEcCCCCcCEECCcCCCCcCCCCC----CceEChhccCh
Confidence 679999873 3 2333 379999999999976655442 35679988543
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.44 E-value=5.9 Score=31.59 Aligned_cols=46 Identities=26% Similarity=0.592 Sum_probs=30.5
Q ss_pred CcccccccccccccCCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
..| ||..... + +.+.- . |. .-||..|+. |...| ...|.||.|+..-
T Consensus 37 ~yC-iC~~~~~-g---~MI~CD~~dC~~~WfH~~CVg--l~~~p----~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSY-G---EMIGCDNPDCSIEWFHFACVG--LTTKP----RGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCC-S---CCCCCSCSSCSCCCCCSTTTT--CSSCC----CSSCCCTTTCCCC
T ss_pred cEE-ECCCCCC-C---CEeEecCCCCCCCCEecccCC--cCcCC----CCCEECcCccCcC
Confidence 567 9988742 3 23322 4 66 689999998 54433 2478999997643
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=58.27 E-value=5 Score=30.32 Aligned_cols=45 Identities=27% Similarity=0.619 Sum_probs=30.1
Q ss_pred CcccccccccccccCCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~ 107 (338)
..| ||...- .+ +.+.- . |. .-||..|+. |...|. ..+.||.|...
T Consensus 17 ~~C-~C~~~~-~g---~MI~CD~~~C~~~wfH~~Cvg--l~~~p~----g~w~Cp~C~~~ 65 (71)
T 1wen_A 17 TYC-LCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQE 65 (71)
T ss_dssp CCS-TTCCCS-CS---SEECCSCSSCSCCCEETTTTT--CSSCCS----SCCCCTTTSSC
T ss_pred CEE-ECCCCC-CC---CEeEeeCCCCCCccEecccCC--cCcCCC----CCEECCCCCcc
Confidence 567 898863 23 33332 4 76 799999998 544432 57899999653
No 97
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.20 E-value=1.7 Score=33.49 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=31.7
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
-.|.||...=..+ +.+.= .|...||..||+.=|...|.. ....||.|..
T Consensus 27 c~C~vC~~~~~~~---~ll~CD~C~~~yH~~Cl~Ppl~~~P~g---~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPN---MQLLCDECNVAYHIYCLNPPLDKVPEE---EYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCST---TEEECSSSCCEEETTSSSSCCSSCCCS---SCCCCTTTCC
T ss_pred CCCcCcCCcCCCC---CEEEcCCCCccccccccCCCccCCCCC---CCcCCcCccC
Confidence 3588888653222 23332 799999999998755554321 0378999964
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=57.59 E-value=9 Score=30.78 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=28.9
Q ss_pred Ccccccccccc---cccCCCeEE-ecCCCccCHHHHHH---HHhcCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLE---EESGSETTR-LGCLHVIHTSCLVS---HIKSFPPHTAPAGYVCPLCS 105 (338)
Q Consensus 52 ~~C~ICle~L~---~gD~~evvR-L~C~HvFH~~CLd~---WL~~~p~nTaPagy~CP~Cr 105 (338)
..|.+|+..=. .|++++.+. -.|+..||..||+. .....+ .....||.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~----~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK----ALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH----TSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh----ccccccccCC
Confidence 67888876521 122123333 47999999999963 211111 1356688885
No 99
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=57.53 E-value=9 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=22.1
Q ss_pred CCCCCCCCCCccCCCCCCCCcchhHHHHHHHhhh
Q 019640 98 GYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (338)
Q Consensus 98 gy~CP~Cr~~I~P~~~i~d~~Spl~~~Lre~l~q 131 (338)
..+||.|.. .++.|++++++.-||..+.+
T Consensus 23 ~LRCpvCqn-----qsI~dSnA~iA~dlR~~Vre 51 (90)
T 2kw0_A 23 ELRCPKCQN-----NSIADSNSMIATDLRQKVYE 51 (90)
T ss_dssp SSBCSCTTS-----CTTTSCCCHHHHHHHHHHHH
T ss_pred cCcCCCCCC-----CchhhcCcHHHHHHHHHHHH
Confidence 467999965 45677789999999887643
No 100
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=57.39 E-value=5.1 Score=26.31 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.3
Q ss_pred cccccceeeeeecCccCcccccCCCcc
Q 019640 7 RKATKLYCFVHKVPVCGECICFPEHQI 33 (338)
Q Consensus 7 rk~T~~fCf~HrvnVCe~Civ~~~H~~ 33 (338)
.+.-++||-+....||..|....+|..
T Consensus 10 ~e~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 10 DERLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp CSSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred CCeeeEEeCCCCeEEeccCCCCCCCCC
Confidence 567789999999999999986567743
No 101
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.99 E-value=3.9 Score=29.65 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=32.2
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcC---CCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSF---PPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~---p~nTaPagy~CP~Cr~ 106 (338)
..|.||.....+.+ ..++. -.|.-.||..|++.-+... |. ....||.|..
T Consensus 7 ~~C~vC~~~~~~~~-~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~----~~W~C~~C~~ 60 (66)
T 2yt5_A 7 GVCTICQEEYSEAP-NEMVICDKCGQGYHQLCHTPHIDSSVIDSD----EKWLCRQCVF 60 (66)
T ss_dssp CCBSSSCCCCCBTT-BCEEECSSSCCEEETTTSSSCCCHHHHHSS----CCCCCHHHHH
T ss_pred CCCCCCCCCCCCCC-CCEEECCCCChHHHhhhCCCcccccccCCC----CCEECCCCcC
Confidence 68999998754322 12333 2799999999998644321 21 3567888854
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=56.65 E-value=1.2 Score=32.98 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=32.3
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~ 107 (338)
..|.||... + +.+. =.|.-.||..||+.-+...|. ....||.|...
T Consensus 9 ~~C~vC~~~---g---~ll~CD~C~~~fH~~Cl~ppl~~~P~----g~W~C~~C~~~ 55 (66)
T 1xwh_A 9 DECAVCRDG---G---ELICCDGCPRAFHLACLSPPLREIPS----GTWRCSSCLQA 55 (66)
T ss_dssp CSBSSSSCC---S---SCEECSSCCCEECTTTSSSCCSSCCS----SCCCCHHHHHT
T ss_pred CCCccCCCC---C---CEEEcCCCChhhcccccCCCcCcCCC----CCeECccccCc
Confidence 679999853 3 2333 379999999999875555442 35679999643
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=56.51 E-value=7.6 Score=33.36 Aligned_cols=45 Identities=13% Similarity=0.391 Sum_probs=31.4
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhc-------CCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKS-------FPPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~-------~p~nTaPagy~CP~Cr~ 106 (338)
..|.+|.+. | +.+-- .|--+||..||+.-+.. .+ .....||.|..
T Consensus 64 d~C~vC~~G---G---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p----~~~W~C~~C~~ 116 (142)
T 2lbm_A 64 EQCRWCAEG---G---NLICCDFCHNAFCKKCILRNLGRKELSTIMDE----NNQWYCYICHP 116 (142)
T ss_dssp CSCSSSCCC---S---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTS----TTCCCCTTTCC
T ss_pred CeecccCCC---C---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccC----CCCCEeecccC
Confidence 789999853 2 33332 79999999999976631 12 13567999963
No 104
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.82 E-value=8 Score=27.59 Aligned_cols=40 Identities=18% Similarity=0.444 Sum_probs=27.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|..|.+.+..++ .+++ .-+..||.+| |+|-.|++++..
T Consensus 6 ~~C~~C~~~I~~~~--~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGS--RKLE-YGGQTWHEHC----------------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSS--CEEC-STTCCEETTT----------------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCc--cEEE-ECccccCccc----------------CeECCCCCcCCC
Confidence 78999999887643 3333 3466788766 358889888754
No 105
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=54.99 E-value=5.4 Score=30.65 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=25.3
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHH-HH
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVS-HI 87 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~-WL 87 (338)
..|.||.+.+... .+.. +.|+|.|=..|+.. |-
T Consensus 4 ~~C~~C~~~~~~~---av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQD---AVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCB---CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCC---ceEECCcCChHHhHHHCHHHhc
Confidence 5799999865332 2444 89999999999998 44
No 106
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=53.91 E-value=4.4 Score=29.56 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=6.5
Q ss_pred cccccccccccc
Q 019640 53 KCCQCQAVLEEE 64 (338)
Q Consensus 53 ~C~ICle~L~~g 64 (338)
.|+.|.+.+..+
T Consensus 2 ~C~~C~~~I~~~ 13 (76)
T 1iml_A 2 KCPKCDKEVYFA 13 (76)
T ss_dssp BCTTTSSBCCGG
T ss_pred cCCCCCCEEECc
Confidence 456666655543
No 107
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=53.65 E-value=2 Score=33.22 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=29.8
Q ss_pred cccccccccccccCCCeEEe--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 53 KCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
.|.+|...=.. +...+ .|...||..||+.-|...|.. ....||.|+.
T Consensus 28 ~C~vC~~~~d~----~~ll~CD~C~~~yH~~Cl~PpL~~~P~g---~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLSSVPSE---DEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG----GGEEECTTTCCEEETTTSSSCCSSCCSS---SCCCCTTTC-
T ss_pred cCCccCCCCCC----cceeEeCCCCCccCcccCCCcccCCCCC---CceECcCccc
Confidence 36666654222 22333 699999999999877665431 1268999975
No 108
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.19 E-value=13 Score=27.19 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=27.3
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|..|.+.+..++ .+++ .=+.+||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~~~~--~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGD--QNVE-YKGTVWHKDC----------------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSS--CEEE-CSSCEEETTT----------------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCc--eEEE-ECcccccccc----------------CchhhCCCccCC
Confidence 68999999887653 3333 2366788666 348888888754
No 109
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=50.68 E-value=6.4 Score=32.22 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=37.5
Q ss_pred cccCCCCCCCcccccccccccccCCCeEEecCC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 43 VIDGEYDWPPKCCQCQAVLEEESGSETTRLGCL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 43 L~Dsdyd~~~~C~ICle~L~~gD~~evvRL~C~-HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+-|..+--+.+|-.|-...+. . +.|+ |.+-..||...|... -.||+|.+++-
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k~-----L--V~C~dHYLCl~CLtlmL~~S--------drCpIC~~pLP 72 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENKG-----L--VECNNHYLCLNCLTLLLSVS--------NRCPICKMPLP 72 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCSS-----E--EECSSCEEEHHHHHHTCSSS--------SEETTTTEECC
T ss_pred cCCccccCcccChhhccccCC-----e--eeecchhhHHHHHHHHHhhc--------cCCcccCCcCC
Confidence 335555446889999877532 1 2465 999999999999764 35999999873
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.42 E-value=7.3 Score=29.54 Aligned_cols=55 Identities=24% Similarity=0.545 Sum_probs=35.1
Q ss_pred CCcccccccccccccCCCeEE-e--cCCCccCHHHHHHHHhcCCC---CCCCCCCCCCCCCCCccCC
Q 019640 51 PPKCCQCQAVLEEESGSETTR-L--GCLHVIHTSCLVSHIKSFPP---HTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L--~C~HvFH~~CLd~WL~~~p~---nTaPagy~CP~Cr~~I~P~ 111 (338)
...| ||......+ ..+. = .|..=||..|+.-- ..+. ...+..|.||.|+..-.++
T Consensus 16 ~~~C-iC~~~~~~g---~MI~CD~~~C~~W~H~~CVgi~--~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 16 KVRC-VCGNSLETD---SMIQCEDPRCHVWQHVGCVILP--DKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCC-SSCCCCCCS---CEEECSSTTTCCEEEHHHHSCC--CTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CEEe-ECCCcCCCC---CEEEECCccCCccccCEEEccc--cccccccccCCCCEECCCCCcccCCC
Confidence 4678 899884333 3444 2 69999999999531 1111 0235689999997655543
No 111
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.16 E-value=3 Score=27.92 Aligned_cols=13 Identities=31% Similarity=1.096 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCcc
Q 019640 97 AGYVCPLCSTTIW 109 (338)
Q Consensus 97 agy~CP~Cr~~I~ 109 (338)
.||.||.|++.+-
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 4799999998775
No 112
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.83 E-value=10 Score=28.66 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=34.3
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
..| +|..+..++. .-+. -.|..=||..|+.--.... ..+..|.||.|+..--|
T Consensus 13 ~~C-~C~~~~d~~~--~MIqCd~C~~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 13 VYC-LCRQPYNVNH--FMIECGLCQDWFHGSCVGIEEENA---VDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCS-TTSCSCCSSS--CEEEBTTTCCEEEHHHHTCCHHHH---TTCSBBCCTTTTTTSCS
T ss_pred cEE-EcCCccCCCC--ceEEcCCCCCcEEeeecCcccccc---cCCCeEECCCcccccCC
Confidence 445 9998875332 3444 3799999999996332211 01357999999876544
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=48.93 E-value=18 Score=30.51 Aligned_cols=52 Identities=15% Similarity=0.427 Sum_probs=32.5
Q ss_pred ccCC-CCCCCcccccccccccccCCCeEE-ecCCCccCHHHHHHHH-----hcCCCCCCCCCCCCCCCC
Q 019640 44 IDGE-YDWPPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHI-----KSFPPHTAPAGYVCPLCS 105 (338)
Q Consensus 44 ~Dsd-yd~~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL-----~~~p~nTaPagy~CP~Cr 105 (338)
.|.| ++ ..|.+|.+. | +.+- =.|-.+||.+||+.-+ .... .......|+.|.
T Consensus 51 ~d~Dg~~--~~C~vC~dG---G---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~--~~~~~W~C~~C~ 109 (129)
T 3ql9_A 51 RDSDGMD--EQCRWCAEG---G---NLICCDFCHNAFCKKCILRNLGRRELSTIM--DENNQWYCYICH 109 (129)
T ss_dssp BCTTSCB--SSCTTTCCC---S---EEEECSSSSCEEEHHHHHHHTCHHHHHHHT--CTTSCCCCTTTC
T ss_pred cCCCCCC--CcCeecCCC---C---eeEecCCCchhhhHHHhCCCcchhHHHHhc--cCCCCeEcCCcC
Confidence 4444 45 779999853 3 2222 2799999999999752 2210 011357899994
No 114
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=47.46 E-value=14 Score=26.73 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=27.9
Q ss_pred Cccccccccccc---ccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEE---ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~---gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|+.|.+.+.. +. +.++. =+..||.+| |+|-.|++++..
T Consensus 16 ~~C~~C~~~I~~~g~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGS--SVVAY-EGQSWHDYC----------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCC--CEEEE-TTEEEETTT----------------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCc--eeEEE-CcceeCccc----------------CEehhcCCCCCC
Confidence 789999999875 22 33332 356888766 359999998863
No 115
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=46.00 E-value=1.2 Score=33.20 Aligned_cols=50 Identities=20% Similarity=0.505 Sum_probs=30.5
Q ss_pred CcccccccccccccCCCeEEe---cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL---GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL---~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr 105 (338)
..| ||......+ ..+.- .|..=||..|+.---........|..|.||.|+
T Consensus 11 v~C-~C~~~~~~g---~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 11 VRC-ICSSTMVND---SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp ECC-TTCCCSCCS---CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred EEe-ECCCCcCCC---CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 456 797765554 35554 399999999984211111111234579999996
No 116
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=45.81 E-value=13 Score=29.38 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=21.3
Q ss_pred CCCCCCCCCccCCCCCCCCcchhHHHHHHHhhh
Q 019640 99 YVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (338)
Q Consensus 99 y~CP~Cr~~I~P~~~i~d~~Spl~~~Lre~l~q 131 (338)
.+||.|.. .++.|++++++.-||..+.+
T Consensus 27 LRCp~Cqn-----qsi~dSna~iA~dlR~~V~~ 54 (84)
T 2hl7_A 27 LRCPKCQN-----QDIADSNAPIAADLRKQIYG 54 (84)
T ss_dssp EECTTSSS-----CBTTTCCSHHHHHHHHHHHH
T ss_pred CcCCCCCC-----CchhhcCcHHHHHHHHHHHH
Confidence 56999965 34667779999999887644
No 117
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=43.22 E-value=3.7 Score=30.73 Aligned_cols=46 Identities=24% Similarity=0.498 Sum_probs=31.7
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
..| ||..+...+ ..+. -.|..=||..|+.--. ...|..|.||.|+.
T Consensus 20 ~~C-iC~~~~~~~---~MIqCd~C~~WfH~~Cvgi~~-----~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFAGR---PMIECNECHTWIHLSCAKIRK-----SNVPEVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCTTC---CEEECTTTCCEEETTTTTCCT-----TSCCSSCCCHHHHT
T ss_pred eEe-ECCCcCCCC---CEEECCCCCccccccccCcCc-----ccCCCcEECCCCCC
Confidence 567 998875422 3444 3799999999996322 23467899999964
No 118
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=42.53 E-value=6.1 Score=27.32 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=23.2
Q ss_pred cccccceeeeeecCccCcccccCCCccee
Q 019640 7 RKATKLYCFVHKVPVCGECICFPEHQICV 35 (338)
Q Consensus 7 rk~T~~fCf~HrvnVCe~Civ~~~H~~Cv 35 (338)
++.-++||-+....||..|....+|..-.
T Consensus 15 ~e~l~lfC~~d~~~iC~~C~~~~~H~~H~ 43 (53)
T 2did_A 15 HEALSLFCYEDQEAVCLICAISHTHRAHT 43 (53)
T ss_dssp CCBCCEEESSSCSEECHHHHTSSTTTTSC
T ss_pred CCeeeEEeCCCCeEEeccccCCCCCCCCc
Confidence 56778999999999999998656775443
No 119
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.05 E-value=14 Score=26.70 Aligned_cols=46 Identities=15% Similarity=0.389 Sum_probs=29.7
Q ss_pred cCCCCCCCcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 45 DGEYDWPPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 45 Dsdyd~~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
+.-+. ..|+.|.+.+..++ .+++. -+..||.+| |+|-.|++++...
T Consensus 7 ~~~~~--~~C~~C~~~I~~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 7 NALAS--ATCERCKGGFAPAE--KIVNS-NGELYHEQC----------------FVCAQCFQQFPEG 52 (77)
T ss_dssp SCCCC--CBCSSSCCBCCSTT--TCEEE-TTEEECTTT----------------CCCTTTCCCCGGG
T ss_pred cCCCC--CCchhcCCccCCCc--eEEEe-CccEecccc----------------CeECCCCCCCCCC
Confidence 33444 78999999987543 33322 355777665 3588898887643
No 120
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=41.99 E-value=1.7 Score=32.51 Aligned_cols=55 Identities=22% Similarity=0.524 Sum_probs=35.8
Q ss_pred CCCCcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 49 DWPPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 49 d~~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
++...| +|.....++. ..+.- .|..=||..|+.--.. ...|..|.||.|+..--|
T Consensus 14 ~~~~~C-~C~~~~~~g~--~mI~Cd~C~~W~H~~Cvg~~~~----~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGE--RMLACDGCGVWHHTRCIGINNA----DALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SSEECC-TTCCCSCCSS--CEEECSSSCEEEETTTTTCCTT----SCCCSCCCCHHHHHHCSS
T ss_pred CcceEe-eCCCccCCCC--cEEECCCCCCccCCeeeccCcc----ccCCCcEECCCccCCCCC
Confidence 334678 7988764442 23332 7999999999864321 123578999999765444
No 121
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.79 E-value=11 Score=27.36 Aligned_cols=39 Identities=26% Similarity=0.482 Sum_probs=27.7
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|..|.+.+..++ .+. .-+..||.+| |+|-.|+++|..
T Consensus 10 ~~C~~C~~~I~~~~---~v~-a~~~~~H~~C----------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAE---KVS-SLGKDWHKFC----------------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTT---EEE-ETTEEEETTT----------------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCe---EEE-ECCeEeeCCC----------------CCCCCCCCccCC
Confidence 78999999987653 332 3366788766 359999888864
No 122
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=40.70 E-value=3.4 Score=30.47 Aligned_cols=44 Identities=27% Similarity=0.596 Sum_probs=28.9
Q ss_pred CcccccccccccccCCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
.-| +|...- .| +.+.= . |. .-||..|+. |...| ...+.||.|+.
T Consensus 12 ~yC-~C~~~~-~g---~MI~CD~c~C~~~WfH~~Cvg--l~~~p----~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVS-YG---EMIGCDNEQCPIEWFHFSCVS--LTYKP----KGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCC----SSCCCCHHHHT
T ss_pred cEE-ECCCCC-CC---CeeeeeCCCCCcccEecccCC--cCcCC----CCCEECcCccc
Confidence 567 898863 23 23332 5 65 899999998 44433 24788999954
No 123
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.60 E-value=8.5 Score=31.09 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=23.6
Q ss_pred Ccccccccccc----cccCCCeEE-ecCCCccCHHHHHHH
Q 019640 52 PKCCQCQAVLE----EESGSETTR-LGCLHVIHTSCLVSH 86 (338)
Q Consensus 52 ~~C~ICle~L~----~gD~~evvR-L~C~HvFH~~CLd~W 86 (338)
+.|.+|++.-. .|++++.+. -.|+..||..||+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 57999987642 233223333 379999999999854
No 124
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=40.58 E-value=3.2 Score=35.34 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=32.1
Q ss_pred CcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~ 107 (338)
..| +|.....++. ..+.= .|...||..|+.--.... ..+..|.||.|+..
T Consensus 9 ~~C-~C~~~~~~~~--~mi~Cd~C~~WfH~~Cv~~~~~~~---~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 9 LYC-ICKTPEDESK--FYIGCDRCQNWYHGRCVGILQSEA---ELIDEYVCPQCQST 59 (174)
T ss_dssp EET-TTTEECCTTS--CEEECTTTCCEEEHHHHTCCHHHH---TTCSSCCCHHHHHH
T ss_pred cEe-eCCCCCCCCC--CEeECCCCCchhChhhcCCchhhc---cCccCeecCCCcch
Confidence 668 9998864331 33332 799999999995321110 12357899999754
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=40.45 E-value=12 Score=30.52 Aligned_cols=43 Identities=26% Similarity=0.510 Sum_probs=28.4
Q ss_pred CCcccccccccccccCCCeEEe---cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019640 51 PPKCCQCQAVLEEESGSETTRL---GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL---~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr 105 (338)
+..|.+|.. .| +.+.= .|-..||..||. |...|. ....||.|.
T Consensus 15 ~~~C~~C~~---~G---~ll~CD~~~Cp~~fH~~Cl~--L~~~P~----g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGD---GG---ELVMCDKKDCPKAYHLLCLN--LTQPPY----GKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCC---CS---EEEECCSTTCCCEECTGGGT--CSSCCS----SCCCCGGGB
T ss_pred CCCCCcCCC---CC---cEeEECCCCCCcccccccCc--CCcCCC----CCEECCCCC
Confidence 477999983 23 34443 488999999998 655442 345677664
No 126
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=40.27 E-value=25 Score=27.32 Aligned_cols=51 Identities=18% Similarity=0.378 Sum_probs=31.7
Q ss_pred CCcccccccccccccCCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 51 PPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
...|.||...-...+ .+.+.- .|.-.||..|+..-+ .|. ....||.|....
T Consensus 25 ~~~C~vC~~~~s~~~-~~ll~CD~C~~~fH~~Cl~p~~--vP~----g~W~C~~C~~~~ 76 (88)
T 2l43_A 25 DAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPY--IPE----GQWLCRHCLQSR 76 (88)
T ss_dssp CCCCSSCCSSSSCSE-EEEEECSSSCCCCCHHHHTCSS--CCS----SCCCCHHHHHHT
T ss_pred CCcCCcCCCCCCCCC-CCEEECCCCCchhhcccCCCCc--cCC----CceECccccCcc
Confidence 478999987632211 122222 699999999998532 222 356799995543
No 127
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=39.76 E-value=3.3 Score=30.16 Aligned_cols=44 Identities=25% Similarity=0.613 Sum_probs=29.4
Q ss_pred CcccccccccccccCCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
.-| +|.+.- .| +.+.= . |. .-||..|+. |...|. ..+.||.|+.
T Consensus 10 ~yC-~C~~~~-~g---~mi~CD~~~C~~~wfH~~Cvg--l~~~p~----~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YG---EMIGCDNPDCPIEWFHFACVD--LTTKPK----GKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCCS----SCCCCHHHHC
T ss_pred cEE-ECCCCC-CC---CeeEeeCCCCCCCCEecccCC--cccCCC----CCEECcCccC
Confidence 567 898873 23 23332 5 76 799999999 554432 4688999854
No 128
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.71 E-value=2.8 Score=33.13 Aligned_cols=48 Identities=25% Similarity=0.494 Sum_probs=32.0
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
..|.||...=..+ ..+. =.|...||..||+.=|...|. ....||.|..
T Consensus 17 ~~C~vC~~~~~~~---~ll~CD~C~~~~H~~Cl~Ppl~~~P~----g~W~C~~C~~ 65 (92)
T 2e6r_A 17 YICQVCSRGDEDD---KLLFCDGCDDNYHIFCLLPPLPEIPR----GIWRCPKCIL 65 (92)
T ss_dssp CCCSSSCCSGGGG---GCEECTTTCCEECSSSSSSCCSSCCS----SCCCCHHHHH
T ss_pred CCCccCCCcCCCC---CEEEcCCCCchhccccCCCCcccCCC----CCcCCccCcC
Confidence 5699998763322 2222 279999999999865554443 3567999943
No 129
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=39.63 E-value=13 Score=29.79 Aligned_cols=40 Identities=23% Similarity=0.500 Sum_probs=28.1
Q ss_pred cccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 53 KCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
.|..|.+.+..++ .+++. -+.+||.+| |+|-.|+++|.+.
T Consensus 10 ~C~~C~~~I~~~e--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~g 49 (123)
T 2l3k_A 10 LCASCDKRIRAYE--MTMRV-KDKVYHLEC----------------FKCAACQKHFSVG 49 (123)
T ss_dssp CCSSSSCCCCTTC--CCCCC-SSCCCCTTT----------------CBCTTTCCBCCTT
T ss_pred cccCCCCeecCCc--eEEEE-CCccccccc----------------CccccCCCCCCCC
Confidence 7999999987643 23332 367888876 4599999988543
No 130
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.56 E-value=2.6 Score=32.98 Aligned_cols=49 Identities=16% Similarity=0.462 Sum_probs=32.0
Q ss_pred CcccccccccccccCCCeEEe--cCCCccCHHHHHHHHhc----CCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKS----FPPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~----~p~nTaPagy~CP~Cr~ 106 (338)
..|.||...=...+ ..+.+ .|...||..|++.-|.. -|. ....|+.|..
T Consensus 17 ~~C~vC~~~~~~~~--~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~----g~W~C~~C~~ 71 (88)
T 1wev_A 17 LACVVCRQMTVASG--NQLVECQECHNLYHQDCHKPQVTDKEVNDPR----LVWYCARCTR 71 (88)
T ss_dssp CSCSSSCCCCCCTT--CCEEECSSSCCEEETTTSSSCCCHHHHHCTT----CCCCCHHHHH
T ss_pred CcCCCCCCCCCCCC--CceEECCCCCCeEcCccCCCcccccccCCCC----CCeeCccccc
Confidence 67999997633221 22333 79999999999876542 222 3567888854
No 131
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.50 E-value=19 Score=25.65 Aligned_cols=38 Identities=21% Similarity=0.581 Sum_probs=21.3
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I 108 (338)
+.|..|.+.+...+ ..+. .=+..||.+| |+|-.|+++|
T Consensus 6 ~~C~~C~~~I~~~~--~~~~-a~~~~~H~~C----------------F~C~~C~~~L 43 (72)
T 1x61_A 6 SGCGGCGEDVVGDG--AGVV-ALDRVFHVGC----------------FVCSTCRAQL 43 (72)
T ss_dssp CCCSSSCSCCCSSS--CCEE-CSSSEECTTT----------------CBCSSSCCBC
T ss_pred CCCccCCCccCCCc--eEEE-ECCCeEcccC----------------CcccccCCcC
Confidence 56777777765432 1222 2245666655 2477777776
No 132
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=39.33 E-value=4.9 Score=37.04 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=28.0
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCC--CCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAG--YVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTaPag--y~CP~Cr~ 106 (338)
-.|.+|...=..+ ..+- =.|...||..||+.=|... |.| ..||.|..
T Consensus 175 c~C~vC~~~~~~~---~lL~CD~C~~~yH~~CL~PPL~~v-----P~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSV-----PSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC-----CCEECSSSCCEECSCC--CCCCSC-----CSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCC---CeEEcCCCCcceeCccCCCCcccC-----CCCCCCCCcCCcC
Confidence 3588887642222 2222 2799999999998655544 344 67999964
No 133
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=38.43 E-value=3.7 Score=29.91 Aligned_cols=44 Identities=27% Similarity=0.634 Sum_probs=28.9
Q ss_pred CcccccccccccccCCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~ 106 (338)
.-| ||...- .| +.+.- . |. .-||..|+. |...|. ..+.||.|..
T Consensus 11 ~~C-~C~~~~-~g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~----g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCCS----SCCCCHHHHC
T ss_pred CEE-ECCCcC-CC---CEEEeCCCCCCCceEehhcCC--CCcCCC----CCEECcCccC
Confidence 556 898863 23 23332 4 65 789999998 555432 5688999854
No 134
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=38.35 E-value=15 Score=27.18 Aligned_cols=48 Identities=17% Similarity=0.404 Sum_probs=32.0
Q ss_pred CcccccccccccccCCCeEE-e-cCCCccCHHHHHHH------HhcCCCCCCCCCCCCCCCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-L-GCLHVIHTSCLVSH------IKSFPPHTAPAGYVCPLCS 105 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L-~C~HvFH~~CLd~W------L~~~p~nTaPagy~CP~Cr 105 (338)
..|++|..++.+++ .-+. - .|.--||..|+.-= |...+. +.|.||.|.
T Consensus 9 ~~C~~C~~p~~~~~--~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~----~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQ--DAILCEASCQKWFHRICTGMTETAYGLLTAEAS----AVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTS--CEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTT----EEECCHHHH
T ss_pred CcCccCCCccCCCC--CeEecccCccccCchhccCCCHHHHHHhhccCC----CcEECcCcc
Confidence 57999999986653 3333 3 79999999998422 221111 367788874
No 135
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=38.33 E-value=10 Score=26.94 Aligned_cols=29 Identities=34% Similarity=0.892 Sum_probs=23.2
Q ss_pred ccccceeeeeecCccCcccccCCCcceee
Q 019640 8 KATKLYCFVHKVPVCGECICFPEHQICVV 36 (338)
Q Consensus 8 k~T~~fCf~HrvnVCe~Civ~~~H~~CvV 36 (338)
+.-++||-.-++.||..|.+..+|..-.+
T Consensus 17 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 45 (64)
T 2d8u_A 17 EKINIYCLTCEVPTCSMCKVFGIHKACEV 45 (64)
T ss_dssp CCCCSEESSSCCCCCSHHHHSSSTTSSCE
T ss_pred CccceEcCcCCceeCccccCCCcCCCCCe
Confidence 46789999999999999986567765443
No 136
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.95 E-value=14 Score=27.48 Aligned_cols=38 Identities=24% Similarity=0.586 Sum_probs=26.9
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|..|.+.+..++ .+..+ +..||.+| |+|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~~~--~v~a~--~~~wH~~C----------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQ--SLLAL--DKQWHVSC----------------FKCQTCSVILT 53 (80)
T ss_dssp SCCTTTCCCCSSSC--CEEET--TEEECTTT----------------CBCSSSCCBCS
T ss_pred CCCcCcCCeeCCCe--EEEEC--Cccccccc----------------CCcCcCCCCcC
Confidence 68999999987653 33333 56778766 35889988775
No 137
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.92 E-value=28 Score=25.42 Aligned_cols=39 Identities=21% Similarity=0.545 Sum_probs=24.7
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|..|.+.+..++ .+++. =+..||.+| |+|-.|+++|-
T Consensus 16 ~~C~~C~~~I~~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDS--RELFY-EDRHFHEGC----------------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSC--CBCCC-SSCCCBTTT----------------SBCTTTCCBCS
T ss_pred CcCccCCCccccCc--EEEEe-CCccccccC----------------CeecCCCCccC
Confidence 67888888887322 23332 256677655 35888888764
No 138
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.38 E-value=15 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.509 Sum_probs=26.0
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|..|.+.+..++ .+++. =+..||.+| |+|-.|++++..
T Consensus 6 ~~C~~C~~~I~~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGT--RKMEY-KGSSWHETC----------------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSS--CEEEE-TTEEEETTT----------------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCc--eEEEE-CcCeecccC----------------CcccccCCccCC
Confidence 67888888887643 23332 355777655 348888887754
No 139
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.37 E-value=22 Score=25.32 Aligned_cols=40 Identities=18% Similarity=0.409 Sum_probs=27.0
Q ss_pred Cccccccccccc-ccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~-gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|..|.+.+.. ++ +.++. .-+..||.+|+ +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~~~-a~~~~wH~~CF----------------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGG-TKYIS-FEERQWHNDCF----------------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSS-CSCEE-CSSCEECTTTC----------------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCC-cceEE-ECCcccCcccC----------------EeccCCCcCC
Confidence 679999998875 12 13333 24678887663 4888988875
No 140
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=35.74 E-value=6.4 Score=26.70 Aligned_cols=28 Identities=32% Similarity=0.884 Sum_probs=22.4
Q ss_pred ccccceeeeeecCccCcccccCCCccee
Q 019640 8 KATKLYCFVHKVPVCGECICFPEHQICV 35 (338)
Q Consensus 8 k~T~~fCf~HrvnVCe~Civ~~~H~~Cv 35 (338)
+..++||-+.+..||..|....+|..-.
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred ccccEEcCCCCeeEcccccCCCcCCCCc
Confidence 5688999999999999997556675443
No 141
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=35.39 E-value=29 Score=26.07 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=29.7
Q ss_pred CCcccccccccccccCCCeEEe--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019640 51 PPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr 105 (338)
...|.||...-...+ +...+ .|.-.||..|+..- ..|. ....||.|.
T Consensus 16 ~~~C~vC~~~~s~~~--~~ll~CD~C~~~~H~~Cl~~~--~vP~----g~W~C~~C~ 64 (71)
T 2ku3_A 16 DAVCSICMDGESQNS--NVILFCDMCNLAVHQECYGVP--YIPE----GQWLCRHCL 64 (71)
T ss_dssp SCSCSSSCCCCCCSS--SCEEECSSSCCEEEHHHHTCS--SCCS----SCCCCHHHH
T ss_pred CCCCCCCCCCCCCCC--CCEEECCCCCCccccccCCCC--cCCC----CCcCCccCc
Confidence 477999987632221 23333 79999999999743 1221 346788884
No 142
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=33.66 E-value=35 Score=33.40 Aligned_cols=49 Identities=18% Similarity=0.412 Sum_probs=36.0
Q ss_pred CcccccccccccccCCCeEE-ecCCCc--cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHV--IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~Hv--FH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
-.|++=...+.. .+| ..|.|+ |-.+=+-.+..+.+ ...||+|.+.+-+.
T Consensus 216 L~CPlS~~ri~~-----P~Rg~~C~HlqCFDl~sfL~~~~~~~------~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTI-----PCRAVTCTHLQCFDAALYLQMNEKKP------TWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSS-----EEEETTCCCCCCEEHHHHHHHHHHSC------CCBCTTTCSBCCGG
T ss_pred eeCCCccceecc-----CCcCCCCCCCccCCHHHHHHHHhhCC------CeECCCCCcccCHH
Confidence 468877777743 566 589998 88777777666543 46899999988765
No 143
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=32.93 E-value=2.9 Score=33.89 Aligned_cols=77 Identities=22% Similarity=0.445 Sum_probs=42.3
Q ss_pred ccCcccccCCCcceeeee--cccccccCCCCCC--CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCC
Q 019640 21 VCGECICFPEHQICVVRT--YSEWVIDGEYDWP--PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTA 95 (338)
Q Consensus 21 VCe~Civ~~~H~~CvVqs--YlqWL~Dsdyd~~--~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTa 95 (338)
-|..|-. .-|..|+--+ .++.+...++.=+ ..|.||...-.++ .++. -.|...||..||+.=|...|.
T Consensus 25 ~C~~C~~-~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~---~ll~Cd~C~~~yH~~Cl~ppl~~~P~--- 97 (114)
T 2kwj_A 25 SCADCGR-SGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDD---QLLFCDDCDRGYHMYCLNPPVAEPPE--- 97 (114)
T ss_dssp ECSSSCC-EECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTT---TEEECSSSCCEEETTTSSSCCSSCCS---
T ss_pred EeCCCCC-ccchhhCCChhhhhhccCCCccCccccCccCcccccCCCC---ceEEcCCCCccccccccCCCccCCCC---
Confidence 3556653 4588887321 1112222222111 2577777653332 2333 279999999999875554442
Q ss_pred CCCCCCCCCC
Q 019640 96 PAGYVCPLCS 105 (338)
Q Consensus 96 Pagy~CP~Cr 105 (338)
....||.|.
T Consensus 98 -g~W~C~~C~ 106 (114)
T 2kwj_A 98 -GSWSCHLCW 106 (114)
T ss_dssp -SCCCCHHHH
T ss_pred -CCeECcccc
Confidence 356788884
No 144
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.46 E-value=24 Score=27.02 Aligned_cols=42 Identities=21% Similarity=0.437 Sum_probs=30.3
Q ss_pred ecccccccCCCCCCCcccccccccccccCCCeEE---ecCCCccCHHHHHHH
Q 019640 38 TYSEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSH 86 (338)
Q Consensus 38 sYlqWL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~W 86 (338)
+-..|+.|.+-. .|.+|...|.-- ..| -.||++|=..|....
T Consensus 11 ~~~~W~pd~~~~---~C~~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 11 SKGYWQEDEDAP---ACNGCGCVFTTT----VRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCSCCCCTTTCC---BCTTTCCBCCTT----SCCEECTTTCCEECTGGGCCE
T ss_pred CCCccccCCCCC---CCcCcCCccccc----hhcccccCCCcEEChHHhCCe
Confidence 346799887644 899999998542 222 379999998887654
No 145
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.28 E-value=9.4 Score=27.28 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=23.1
Q ss_pred cccccceeeeeecCccCcccccCCCccee
Q 019640 7 RKATKLYCFVHKVPVCGECICFPEHQICV 35 (338)
Q Consensus 7 rk~T~~fCf~HrvnVCe~Civ~~~H~~Cv 35 (338)
.+.-++||-+.+..||..|....+|..-.
T Consensus 21 ~e~L~lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 21 GEKLLLFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp CCBCCEEETTTCSEECHHHHTSTTTTTCC
T ss_pred CceeeeecCCCCcEEecccCCCCcCCCCc
Confidence 56778999999999999998656775443
No 146
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=32.05 E-value=20 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.446 Sum_probs=28.8
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|..|.+.+..++ .+++ .=+.+||.+|+ +|-.|++++-..
T Consensus 12 ~~C~~C~~~i~~~e--~~~~-~~~~~~H~~CF----------------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 12 ATCERCKGGFAPAE--KIVN-SNGELYHEQCF----------------VCAQCFQQFPEG 52 (72)
T ss_dssp CBCTTTCCBCCTTC--EEEE-ETTEEEETTTS----------------SCTTTCCCCGGG
T ss_pred ccchhcCccccCCc--eEEE-eCcCeeCcCCC----------------cccCCCCCCCCC
Confidence 78999999987653 2333 34567887764 488998887543
No 147
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=30.56 E-value=5.2 Score=28.11 Aligned_cols=47 Identities=19% Similarity=0.425 Sum_probs=29.7
Q ss_pred cccccccccccccCCCeEE-e-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019640 53 KCCQCQAVLEEESGSETTR-L-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105 (338)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L-~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr 105 (338)
.|.+|..+..+++ .-+. - .|..=||..|+.--.... .+..|.||.|+
T Consensus 4 ~cc~C~~p~~~~~--~mI~Cd~~C~~WfH~~Cvgl~~~~~----~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKV--DWVQCDGGCDEWFHQVCVGVSPEMA----ENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTC--CEEECTTTTCCEEETTTTTCCHHHH----HHSCCCCSCC-
T ss_pred cCCCCcCccCCCC--cEEEeCCCCCccCcccccCCCcccc----CCCCEECCCCC
Confidence 4788988875442 3444 2 588899999986432211 01468899995
No 148
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.53 E-value=25 Score=25.40 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=26.3
Q ss_pred Cccccccccccc-ccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~-gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|+.|.+.+.. ++ .+.+. .-+..||.+|+ +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~g~-~~~~~-a~~~~wH~~CF----------------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTG-AKFIC-FQDSQWHSECF----------------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTT-CCEEE-ETTEEEEGGGC----------------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCC-ceeEE-ECCcccCcccC----------------ChhhCCCcCC
Confidence 789999998875 12 13333 34567887773 4888888775
No 149
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.25 E-value=29 Score=25.75 Aligned_cols=40 Identities=30% Similarity=0.636 Sum_probs=26.3
Q ss_pred CCcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
...|..|.+.+..++ .+. .=+.+||.+| |+|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~e---~v~-a~~~~wH~~C----------------F~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLE---RLC-VNGHFFHRSC----------------FRCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTT---BCC-BTTBCCBTTT----------------CBCSSSCCBCCT
T ss_pred CCCCcccCCCcccce---EEE-ECCCeeCCCc----------------CEEcCCCCCcCC
Confidence 367999988886543 222 2356788777 348888777654
No 150
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.09 E-value=37 Score=24.53 Aligned_cols=37 Identities=27% Similarity=0.609 Sum_probs=23.1
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|..|.+.+.. +.++ .=+..||.+| |+|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~----~~v~-a~~~~~H~~C----------------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ----GGVT-YRDQPWHREC----------------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS----CCEE-SSSSEECTTT----------------CBCSSSCCBCT
T ss_pred CcCCCCCCEecC----cEEE-ECCchhhhhh----------------CCcccCCCcCC
Confidence 678888887743 1222 3356777665 34788887774
No 151
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=29.65 E-value=41 Score=33.10 Aligned_cols=49 Identities=16% Similarity=0.456 Sum_probs=35.3
Q ss_pred CcccccccccccccCCCeEE-ecCCCc--cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHV--IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~Hv--FH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
-.|++=...+.. .+| ..|.|+ |-.+=+-.+....+ ...||+|.+.+-+.
T Consensus 250 L~CPlS~~ri~~-----PvRg~~C~HlQCFDl~sfL~~~~~~~------~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKY-----PSKSINCKHLQCFDALWFLHSQLQIP------TWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSS-----EEEETTCCSSCCEEHHHHHHHHHHSC------CCBCTTTCCBCCGG
T ss_pred ecCCCccccccc-----cCcCCcCCCcceECHHHHHHHhhcCC------ceeCCCCCcccCHH
Confidence 678887777643 566 589998 87776666655542 46899999988764
No 152
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.32 E-value=26 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.550 Sum_probs=22.8
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|..|.+.+... .++ .-+..||.+| |+|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~----~~~-a~~~~~H~~C----------------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTG----GVT-YREQPWHKEC----------------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSS----EEE-SSSSEEETTT----------------SBCSSSCCBCT
T ss_pred CCCcccCCeeccc----eEE-ECccccCCCC----------------CccCCCCCcCC
Confidence 6788888877531 222 2356777655 34778877774
No 153
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.97 E-value=29 Score=26.39 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=26.1
Q ss_pred ccccccCCCCCCCcccccccccccccCCCeEE---ecCCCccCHHHHHHH
Q 019640 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSH 86 (338)
Q Consensus 40 lqWL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~W 86 (338)
..|+.|.+.. .|.+|...|.-. ..+ -.||.+|=..|....
T Consensus 11 ~~W~~d~~~~---~C~~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 11 HAWLKDDEAT---HCRQCEKEFSIS----RRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp ----CCCCCC---BCTTTCCBCBTT----BCCEECTTTCCEECSGGGCEE
T ss_pred CccccCccCC---cccCcCCcccCc----cccccCCCCCCEEChHHhCCe
Confidence 4688777544 799999998542 222 379999999998654
No 154
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.69 E-value=34 Score=24.95 Aligned_cols=37 Identities=22% Similarity=0.610 Sum_probs=24.3
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|+.|.+.+.+ ..++ .-+..||.+| |+|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~----~~~~-a~~~~~H~~C----------------F~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILD----RILR-AMGKAYHPGC----------------FTCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCS----CCEE-ETTEEECTTT----------------CBCSSSCCBCT
T ss_pred CccccCCCeecc----eeEE-ECCccccHHh----------------cCcccCCCccC
Confidence 678888888862 2222 2356777665 35888888875
No 155
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.97 E-value=35 Score=24.04 Aligned_cols=37 Identities=24% Similarity=0.590 Sum_probs=21.9
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|..|.+.+... .+.. =+..||.+| |+|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~---~~~a--~~~~~H~~C----------------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSG---GITY--QDQPWHADC----------------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTT---CEEE--TTEEECTTT----------------TBCTTTCCBCT
T ss_pred CCCcccCCEeCcc---eEEE--CccccccCc----------------CEECCCCCCCC
Confidence 5677887777531 2222 245666655 24777777765
No 156
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.40 E-value=30 Score=26.34 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=28.3
Q ss_pred ccccccCCCCCCCcccccccccccccCCCeEE----ecCCCccCHHHHHHH
Q 019640 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR----LGCLHVIHTSCLVSH 86 (338)
Q Consensus 40 lqWL~Dsdyd~~~~C~ICle~L~~gD~~evvR----L~C~HvFH~~CLd~W 86 (338)
..|+.|.+- ..|.+|...|.- ..| -.||.+|=..|....
T Consensus 6 ~~W~pd~~~---~~C~~C~~~F~~-----~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 6 SGRYPTNNF---GNCTGCSATFSV-----LKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSCSCCCC---SSCSSSCCCCCS-----SSCCEECSSSCCEECTTTSCEE
T ss_pred CccccCCCC---CcCcCcCCcccc-----chhhhhhcCCCcEEChhhcCCc
Confidence 478888754 379999999843 223 379999988886544
No 157
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.37 E-value=17 Score=23.36 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCc
Q 019640 97 AGYVCPLCSTTI 108 (338)
Q Consensus 97 agy~CP~Cr~~I 108 (338)
+-++||+|+...
T Consensus 2 ~k~~CpvCk~q~ 13 (28)
T 2jvx_A 2 SDFCCPKCQYQA 13 (28)
T ss_dssp CCEECTTSSCEE
T ss_pred CcccCccccccC
Confidence 457899998754
No 158
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.16 E-value=34 Score=25.59 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=26.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|..|.+.+. + +.+. .-+..||.+| |+|-.|+++|..
T Consensus 26 ~~C~~C~~~I~-~---~~v~-a~~~~~H~~C----------------F~C~~C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIR-G---PFLV-ALGKSWHPEE----------------FNCAHCKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCC-S---CEEE-ETTEEECTTT----------------CBCSSSCCBCSS
T ss_pred CCCccCCCEec-c---eEEE-ECCccccccC----------------CccCCCCCCCCC
Confidence 78999999884 2 2332 3467788766 358889888764
No 159
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.67 E-value=28 Score=27.07 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=29.0
Q ss_pred ccccccCCCCCCCcccccccccccccCCCeEEecCCCccCHHHHHHHH
Q 019640 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHI 87 (338)
Q Consensus 40 lqWL~Dsdyd~~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL 87 (338)
..|+.|.+- ..|.+|...|.--. ..-.--.||++|=..|...++
T Consensus 12 p~W~~d~~~---~~C~~C~~~F~~~~-RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 12 PTWVPDSEA---PNCMNCQVKFTFTK-RRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCCCCGGGC---CBCTTTCCBCCSSS-CCEECTTTCCEECGGGSCEEE
T ss_pred CcCcccccC---CcCcCCCCcccchh-hCccccCCCCEECCcccCCee
Confidence 458777544 47999999985421 011113799999999877654
No 160
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=24.76 E-value=49 Score=26.03 Aligned_cols=47 Identities=23% Similarity=0.413 Sum_probs=28.3
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~~ 112 (338)
-.|..|...|... .-...=+.+|...|..+.+. .+|..|.++|.+..
T Consensus 31 F~C~~C~~~L~~~----~f~~~~g~~yC~~cy~~~~~----------~~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 31 FCCFDCDSILAGE----IYVMVNDKPVCKPCYVKNHA----------VVCQGCHNAIDPEV 77 (126)
T ss_dssp SBCTTTCCBCTTS----EEEEETTEEEEHHHHHHHSC----------CBCTTTCSBCCTTS
T ss_pred CCcCCCCCCCCcC----EEEeECCEEechHHhCcCcC----------ccCcccCCcCCcCc
Confidence 4577777777532 22223355666777665442 24888888888643
No 161
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.01 E-value=41 Score=23.43 Aligned_cols=38 Identities=21% Similarity=0.509 Sum_probs=26.1
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|+.|.+.+. + +.+. .=+..||.+| |+|-.|++++..
T Consensus 6 ~~C~~C~~~I~-~---~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-G---RVVN-AMGKQWHVEH----------------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-S---CEEC-CTTSBEETTT----------------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-c---eEEE-ECccccccCc----------------CEECCCCCCCCC
Confidence 78999999886 3 2332 3356777765 358899888764
No 162
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=23.56 E-value=1.2e+02 Score=24.43 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=35.8
Q ss_pred CcccccccccccccCCCe-EE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSET-TR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~ev-vR-L~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|.||-++.-.....++ +. --|+--.-+.|++.-.+.. ...||.|++..-
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG-------~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG-------TQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS-------CSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc-------CccccccCCccc
Confidence 789999998653221222 22 2588888999998877654 346999999875
No 163
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.28 E-value=40 Score=25.25 Aligned_cols=40 Identities=25% Similarity=0.595 Sum_probs=27.7
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
..|..|.+.+..++ .+ ..-+.+||.+| |+|-.|.++|...
T Consensus 16 ~~C~~C~~~I~~~~---~v-~a~~~~~H~~C----------------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 16 ETCVECQKTVYPME---RL-LANQQVFHISC----------------FRCSYCNNKLSLG 55 (91)
T ss_dssp CBCTTTCCBCCTTS---EE-ECSSSEEETTT----------------CBCTTTCCBCCTT
T ss_pred CcCccCCCccCCce---eE-EECCCEECCCC----------------CeeCCCCCCCCCC
Confidence 67999998887643 33 34567788776 3488888877653
No 164
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.15 E-value=49 Score=23.87 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=20.8
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|+-|.+.+.. +.+ ..-+..||.+| |+|-.|+++|.+
T Consensus 6 ~~C~~C~~~I~~----~~v-~a~~~~wH~~C----------------F~C~~C~~~L~~ 43 (73)
T 1wig_A 6 SGCDSCEKYITG----RVL-EAGEKHYHPSC----------------ALCVRCGQMFAE 43 (73)
T ss_dssp CSCSSSCCCCSS----CCB-CCSSCCBCTTT----------------SCCSSSCCCCCS
T ss_pred CCcccCCCEecC----eeE-EeCCCCCCCCc----------------CEeCCCCCCCCC
Confidence 567777776643 122 12345666555 246677666653
No 165
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=22.66 E-value=23 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=23.9
Q ss_pred cccccceeeeeecCccCcccccCCCcceeee
Q 019640 7 RKATKLYCFVHKVPVCGECICFPEHQICVVR 37 (338)
Q Consensus 7 rk~T~~fCf~HrvnVCe~Civ~~~H~~CvVq 37 (338)
.+.-++||-+....||..|.. .+|....+.
T Consensus 25 ~e~l~lfC~~d~~~iC~~C~~-~~H~~H~~~ 54 (72)
T 2csv_A 25 GKTMELFCQTDQTCICYLCMF-QEHKNHSTV 54 (72)
T ss_dssp CCBCCEEESSSCCEECHHHHH-TTTSSSCEE
T ss_pred CCceEEEeCCCCeEEccccCC-CCCCCCCEe
Confidence 457789999999999999986 788655443
No 166
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.57 E-value=51 Score=23.20 Aligned_cols=38 Identities=21% Similarity=0.574 Sum_probs=21.5
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|..|.+.+.+ +.+. .-+..||.+| |+|-.|+++|..
T Consensus 6 ~~C~~C~~~I~~----~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIG----RVIK-AMNNSWHPEC----------------FRCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCS----CCEE-ETTEEECTTT----------------SBCSSSCCBCSS
T ss_pred CcCccCCCEecc----eEEE-ECcccccccC----------------CEeCCCCCcCCC
Confidence 567777777652 1222 2245666655 247777776654
No 167
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=22.41 E-value=39 Score=25.13 Aligned_cols=52 Identities=25% Similarity=0.428 Sum_probs=32.8
Q ss_pred CcccccccccccccCCCeEE-ecCCCccCHHHHHHHHhcCCCCCC--CCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTA--PAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTa--Pagy~CP~Cr~~I~P 110 (338)
..--||..+...+. .-+. -.|.-=||..|+.-- ...+ +..|.||.|+...-+
T Consensus 10 ~~yCiC~~~~~~~~--~MI~Cd~C~~WfH~~Cvg~~-----~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 10 PVYCVCRLPYDVTR--FMIECDACKDWFHGSCVGVE-----EEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp CEETTTTEECCTTS--CEEECTTTCCEEEHHHHTCC-----TTTGGGBSSCCCHHHHHHHCC
T ss_pred eeEEECCCcCCCCC--CEEEcCCCCCCEeccccccc-----ccccCCCCEEECCCCcccCCC
Confidence 44558988764332 3444 379999999999532 1112 246999999765444
No 168
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=22.26 E-value=30 Score=27.75 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=35.0
Q ss_pred CcccccccccccccCCCeEEe--cCCCccCHHHHHHH------HhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSH------IKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~W------L~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
-.|.+|..++.+++ +-+.- .|..=||..|+.-- +...+ ...|.||.|+..--+
T Consensus 4 ~~C~iC~~p~~~~~--~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~----~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQ--DAILCEASCQKWFHRECTGMTESAYGLLTTEA----SAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTS--CEEECTTTTCCEEEGGGTTCCHHHHHHHHHCT----TEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCC--CEEEecCCcccccccccCCcCHHHHHhhccCC----CCCEECccccCcCCC
Confidence 45999999986543 34443 68999999998522 11111 146899999876544
No 169
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.12 E-value=40 Score=28.24 Aligned_cols=41 Identities=24% Similarity=0.526 Sum_probs=30.4
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P~ 111 (338)
+.|..|.+.+..++ .+...-++.||.+|. +|-.|++.|-..
T Consensus 66 ~~C~~C~~~I~~~~---~v~~a~~~~~H~~CF----------------~C~~C~~~L~~g 106 (169)
T 2rgt_A 66 TKCAACQLGIPPTQ---VVRRAQDFVYHLHCF----------------ACVVCKRQLATG 106 (169)
T ss_dssp CBCTTTCCBCCTTS---EEEEETTEEEEGGGC----------------BCTTTCCBCCTT
T ss_pred ccccccccccCCCc---EEEEcCCceEeeCCC----------------cCCCCCCCCCCC
Confidence 78999999887643 443345788998884 499999988643
No 170
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.74 E-value=35 Score=28.06 Aligned_cols=40 Identities=20% Similarity=0.519 Sum_probs=28.5
Q ss_pred ccccccCCCCCCCcccccccccccccCCCeEE---ecCCCccCHHHHHHH
Q 019640 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSH 86 (338)
Q Consensus 40 lqWL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~W 86 (338)
..|+.|.+. ..|.+|...|.-- ..+ -.||++|=..|....
T Consensus 61 ~~W~~d~~~---~~C~~C~~~Fs~~----~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 61 RKWAEDNEV---QNCMACGKGFSVT----VRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCCCCGGGC---CBCTTTCCBCCSS----SCCEECTTTCCEECGGGSCEE
T ss_pred CccccCCCC---CCCcCcCCccccc----cccccCCCCCeEEChHHhCCc
Confidence 468877654 4799999998542 222 379999999887654
No 171
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.33 E-value=40 Score=24.55 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=24.0
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
..|..|.+.+.. +.+ ..-+.+||.+|+ +|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~----~~~-~a~~~~~H~~CF----------------~C~~C~~~L~ 52 (79)
T 1x62_A 16 PMCDKCGTGIVG----VFV-KLRDRHRHPECY----------------VCTDCGTNLK 52 (79)
T ss_dssp CCCSSSCCCCCS----SCE-ECSSCEECTTTT----------------SCSSSCCCHH
T ss_pred CccccCCCCccC----cEE-EECcceeCcCcC----------------eeCCCCCCCC
Confidence 678888888753 222 223577887663 4888887764
No 172
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.25 E-value=43 Score=24.31 Aligned_cols=38 Identities=18% Similarity=0.418 Sum_probs=23.6
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|+.|.+.+. + +.++ .-+..||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~---~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-G---PFMV-AGEFKYHPEC----------------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-S---CCBC-CTTCCBCTTS----------------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-c---eEEE-ECCceecccc----------------CCccCCCCccCC
Confidence 67888888876 2 1222 2256666554 458888887754
No 173
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.90 E-value=37 Score=23.89 Aligned_cols=39 Identities=23% Similarity=0.600 Sum_probs=27.3
Q ss_pred CcccccccccccccCCCeEEecCCCccC--HHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIH--TSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH--~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|+.|.+.+..++ +.+.. -+..|| .+| |+|-.|+++|.
T Consensus 3 ~~C~~C~~~I~~~~--~~v~a-~~~~wH~~~~C----------------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEV--QRVTY-NNFSWHASTEC----------------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTS--CEEEE-TTEEEETTTTT----------------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCc--eEEEE-CCCccCCCCCC----------------EECCCCCCcCC
Confidence 57999999987643 33332 367788 766 45899998875
No 174
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.49 E-value=35 Score=27.61 Aligned_cols=38 Identities=16% Similarity=0.444 Sum_probs=27.8
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~ 109 (338)
+.|..|.+.+.+. .++. .-+..||.+| |+|-.|++++.
T Consensus 62 ~~C~~C~~~I~~~---~~v~-a~~~~wH~~C----------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADR---FLLY-AMDSYWHSRC----------------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSS---SEEE-ETTEEEETTT----------------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCc---EEEE-eCCcEEcccc----------------cCcCcCCCccc
Confidence 6899999998753 3333 3467788777 35999999885
No 175
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.44 E-value=61 Score=23.73 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=22.8
Q ss_pred CcccccccccccccCCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 019640 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (338)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTaPagy~CP~Cr~~I~P 110 (338)
+.|..|.+.+. + +.++ .-+..||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~---~~v~-a~~~~~H~~C----------------F~C~~C~~~L~~ 53 (79)
T 2cor_A 16 YICQKCHAIID-E---QPLI-FKNDPYHPDH----------------FNCANCGKELTA 53 (79)
T ss_dssp CBCTTTCCBCC-S---CCCC-CSSSCCCTTT----------------SBCSSSCCBCCT
T ss_pred CCCccCCCEec-c---eEEE-ECcceeCCCC----------------CEeCCCCCccCC
Confidence 67888888776 2 1222 2345666555 347788777653
Done!