BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019643
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 147/295 (49%), Gaps = 28/295 (9%)
Query: 22 ESVQD--FQECYHSDP-VPTLDLGSLN----------LEKLGDACKNWGLFRLVSHGIPE 68
ES+ D +E P VPT+DL ++ +E+L A +WG+ L++HGIP
Sbjct: 30 ESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPA 89
Query: 69 TLMSQLRSQAKNLFSFSFESKQRLFTNKPAAVSYFWGTPALTPSGAALAR-APQSINWVE 127
LM +++ + FS S E K++ + N A T + G+ LA A + W E
Sbjct: 90 DLMERVKKAGEEFFSLSVEEKEK-YANDQA-------TGKIQGYGSKLANNASGQLEW-E 140
Query: 128 GFNVPLTQLSDRNQYFQGQQDPLFDSFRLSLEEYGKHMSRIARTIFEAMVRNLHLDSTQS 187
+ L ++ + P + + EY K + +A +F+A+ L L+ +
Sbjct: 141 DYFFHLAYPEEKRDLSIWPKTP--SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRL 198
Query: 188 HSD---LSESTGLVRVYRYPKFSKADEALGMEVHTDSSVLSILNEDQVGGLEVFKDDKWL 244
+ L E +++ YPK + + ALG+E HTD S L+ + + V GL++F + KW+
Sbjct: 199 EKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWV 258
Query: 245 LVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKVNKNEERHSVCYFVFPGEGSVI 299
+ +P S+++++GD ++ +SN +Y S+ HR VNK + R S F P + ++
Sbjct: 259 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 147/295 (49%), Gaps = 28/295 (9%)
Query: 22 ESVQD--FQECYHSDP-VPTLDLGSLN----------LEKLGDACKNWGLFRLVSHGIPE 68
ES+ D +E P VPT+DL ++ +E+L A +WG+ L++HGIP
Sbjct: 29 ESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPA 88
Query: 69 TLMSQLRSQAKNLFSFSFESKQRLFTNKPAAVSYFWGTPALTPSGAALAR-APQSINWVE 127
LM +++ + FS S E K++ + N A T + G+ LA A + W E
Sbjct: 89 DLMERVKKAGEEFFSLSVEEKEK-YANDQA-------TGKIQGYGSKLANNASGQLEW-E 139
Query: 128 GFNVPLTQLSDRNQYFQGQQDPLFDSFRLSLEEYGKHMSRIARTIFEAMVRNLHLDSTQS 187
+ L ++ + P + + EY K + +A +F+A+ L L+ +
Sbjct: 140 DYFFHLAYPEEKRDLSIWPKTP--SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRL 197
Query: 188 HSD---LSESTGLVRVYRYPKFSKADEALGMEVHTDSSVLSILNEDQVGGLEVFKDDKWL 244
+ L E +++ YPK + + ALG+E HTD S L+ + + V GL++F + KW+
Sbjct: 198 EKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWV 257
Query: 245 LVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKVNKNEERHSVCYFVFPGEGSVI 299
+ +P S+++++GD ++ +SN +Y S+ HR VNK + R S F P + ++
Sbjct: 258 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 312
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 31/261 (11%)
Query: 47 EKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNLFSFSFESK-QRLFTNKPAAVSYFWG 105
E + DAC+NWG F LV+HGIP + + K + E + + L +K
Sbjct: 22 EXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASK--------- 72
Query: 106 TPALTPSGAALARAPQSINWVEGF---NVPLTQLSDRNQYFQGQQDPLFDSFRLSLEEYG 162
AL A + +W F ++P++ +S+ L + +R ++
Sbjct: 73 --ALEGVQAEVT----DXDWESTFFLKHLPISNISEVPD--------LDEEYREVXRDFA 118
Query: 163 KHMSRIARTIFEAMVRNLHLDSTQSHSDLSESTGL---VRVYRYPKFSKADEALGMEVHT 219
K + ++A + + + NL L+ + S G +V YP K D G+ HT
Sbjct: 119 KRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHT 178
Query: 220 DSS-VLSILNEDQVGGLEVFKDDKWLLVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKV 278
D+ ++ + +D+V GL++ KD +W+ V P S++VNLGD ++ I+N +Y SV HRV
Sbjct: 179 DAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIA 238
Query: 279 NKNEERHSVCYFVFPGEGSVI 299
K+ R S+ F PG +VI
Sbjct: 239 QKDGARXSLASFYNPGSDAVI 259
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 144/295 (48%), Gaps = 28/295 (9%)
Query: 22 ESVQD--FQECYHSDP-VPTLDLGSLN----------LEKLGDACKNWGLFRLVSHGIPE 68
ES+ D +E P VPT+DL ++ +E+L A +WG+ L++HGIP
Sbjct: 30 ESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPA 89
Query: 69 TLMSQLRSQAKNLFSFSFESKQRLFTNKPAAVSYFWGTPALTPSGAALAR-APQSINWVE 127
L +++ + FS S E K++ ++ T + G+ LA A + W E
Sbjct: 90 DLXERVKKAGEEFFSLSVEEKEKYANDQ--------ATGKIQGYGSKLANNASGQLEW-E 140
Query: 128 GFNVPLTQLSDRNQYFQGQQDPLFDSFRLSLEEYGKHMSRIARTIFEAMVRNLHLDSTQS 187
+ L ++ + P + + EY K + +A +F+A+ L L+ +
Sbjct: 141 DYFFHLAYPEEKRDLSIWPKTP--SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRL 198
Query: 188 HSDLSESTGLV---RVYRYPKFSKADEALGMEVHTDSSVLSILNEDQVGGLEVFKDDKWL 244
++ L+ ++ YPK + + ALG+E HTD S L+ + + V GL++F + KW+
Sbjct: 199 EKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFYEGKWV 258
Query: 245 LVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKVNKNEERHSVCYFVFPGEGSVI 299
+ +P S++ ++GD ++ +SN +Y S+ HR VNK + R S F P + ++
Sbjct: 259 TAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 14/252 (5%)
Query: 47 EKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNLFSFSFESKQRLFTNKPAAVSYFWGT 106
++LG + + +G L + + + + AK F+ E+K++ K A Y
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI--- 80
Query: 107 PALTPSGAALARAPQSIN----WVEGFNVPLTQLSDRNQYFQGQQDPLFDSFRLSLEEYG 162
P G A+ + W G ++P R +F+ +
Sbjct: 81 ----PFGVETAKGADHYDLKEFWHXGRDLPPGHRF-RAHXADNVWPAEIPAFKHDVSWLY 135
Query: 163 KHMSRIARTIFEAMVRNLHLDSTQSHSDLSESTGLVRVYRYPKFSKADEALGMEVHTDSS 222
+ + EA+ L L+ + + ++R+ YP K + H D +
Sbjct: 136 NSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDIN 195
Query: 223 VLSILNEDQVGGLEVF-KDDKWLLVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKVNKN 281
+++L + GGLEV +D +WL + P PG L++N+GD ++ ++N+ S HRV VN
Sbjct: 196 TITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRV-VNPP 254
Query: 282 EERHSVCYFVFP 293
ER V + P
Sbjct: 255 PERRGVPRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 197 LVRVYRYPKFSKADE--ALGMEVHTDSSVLSILNEDQVGGLEV-FKDDKWLLVQPIPGSL 253
L+R+ YP + +E A+ H D +++++L GL+V KD WL V G++
Sbjct: 151 LLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNI 210
Query: 254 IVNLGDMMQAISNDEYMSVKHRV----KVNKNEERHSVCYFVFPGEGSVIRSSRYKPFTY 309
I+N+GD +Q S+ + S HRV +K + R S+ F+ P SV+ S RY +Y
Sbjct: 211 IINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP-HPSVVLSERYTADSY 269
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 22/145 (15%)
Query: 188 HSDLSESTGLVRVYRYPKFSKADEA----------LGMEVHTDSSVLSILNEDQVGGLEV 237
H ++ V + RYP EA L E H D S++++L + V L+V
Sbjct: 174 HFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV 233
Query: 238 FKDDKWLLVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKVNKNEERHSVCYFVFPGEGS 297
+ ++ ++N G M ++N+ Y + HRVK N ER S+ +FV G S
Sbjct: 234 ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGYDS 292
Query: 298 VI----------RSSRYKPFTYSDF 312
VI +S R +P +Y D+
Sbjct: 293 VIDPFDPREPNGKSDR-EPLSYGDY 316
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 22/145 (15%)
Query: 188 HSDLSESTGLVRVYRYPKFSKADEA----------LGMEVHTDSSVLSILNEDQVGGLEV 237
H ++ V + RYP EA L E H D S++++L + V L+V
Sbjct: 174 HFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV 233
Query: 238 FKDDKWLLVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKVNKNEERHSVCYFVFPGEGS 297
+ ++ ++N G M ++N+ Y + HRVK N ER S+ +FV G S
Sbjct: 234 ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGYDS 292
Query: 298 VI----------RSSRYKPFTYSDF 312
VI +S R +P +Y D+
Sbjct: 293 VIDPFDPREPNGKSDR-EPLSYGDY 316
>pdb|1GX3|A Chain A, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|B Chain B, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|C Chain C, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|D Chain D, M. Smegmatis Arylamine N-Acetyl Transferase
Length = 284
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 59 FRLVSHGIPETLMSQLRSQAKNLFSFSFESKQRL 92
+RL HG TL +Q+R + + L++F+ E + R+
Sbjct: 163 YRLTRHGDDHTLAAQVRGEWQPLYTFTTEPRPRI 196
>pdb|1W6F|A Chain A, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|B Chain B, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|C Chain C, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|D Chain D, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site
Length = 278
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 59 FRLVSHGIPETLMSQLRSQAKNLFSFSFESKQRL 92
+RL HG TL +Q+R + + L++F+ E + R+
Sbjct: 157 YRLTRHGDDHTLAAQVRGEWQPLYTFTTEPRPRI 190
>pdb|1W5R|A Chain A, X-Ray Crystallographic Strcuture Of A C70q Mycobacterium
Smegmatis N-Arylamine Acetyltransferase
pdb|1W5R|B Chain B, X-Ray Crystallographic Strcuture Of A C70q Mycobacterium
Smegmatis N-Arylamine Acetyltransferase
Length = 278
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 59 FRLVSHGIPETLMSQLRSQAKNLFSFSFESKQRL 92
+RL HG TL +Q+R + + L++F+ E + R+
Sbjct: 157 YRLTRHGDDHTLAAQVRGEWQPLYTFTTEPRPRI 190
>pdb|1P9Q|C Chain C, Structure Of A Hypothetical Protein Af0491 From
Archaeoglobus Fulgidus
Length = 256
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 166 SRIARTIFEAMVRNLHLDSTQS-HSDLSESTGLVRVYRYPKFSKADEALGME-VHTDSSV 223
SRI R + EA V H+D +S + + + ++ KF + + A+ + HT ++
Sbjct: 145 SRIERALEEAKV---HIDIFKSVEAQVKDIVKALKPILPLKFEEMEIAIKIPPEHTGRAI 201
Query: 224 LSILNEDQVGGLEVFKDDKWLLVQPIPGSLIVNLGDMMQAISNDEYMS 271
++ N V E +D W+ V IP + +L D++ ++ E ++
Sbjct: 202 SALYNFGGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALT 249
>pdb|1T95|A Chain A, Crystal Structure Of The Shwachman-Bodian-Diamond Syndrome
Protein Orthologue From Archaeoglobus Fulgidus
Length = 240
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 166 SRIARTIFEAMVRNLHLDSTQS-HSDLSESTGLVRVYRYPKFSKADEALGME-VHTDSSV 223
SRI R + EA V H+D +S + + + ++ KF + + A+ + HT ++
Sbjct: 129 SRIERALEEAKV---HIDIFKSVEAQVKDIVKALKPILPLKFEEXEIAIKIPPEHTGRAI 185
Query: 224 LSILNEDQVGGLEVFKDDKWLLVQPIPGSLIVNLGDMMQAISNDEYMS 271
++ N V E +D W+ V IP +L D++ ++ E ++
Sbjct: 186 SALYNFGGVTREEWQRDGSWICVXRIPSGXYGDLXDLLGKVAKGEALT 233
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON9|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
Length = 523
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 118 RAPQSINWVEGFNVPLTQLSDRNQYFQGQQDPLFDSFRLSLEEYG---KHMSRIARTIFE 174
+A + +N+ + FN+PL QL D + G Q +EYG +H +++ E
Sbjct: 349 KAAEFVNFCDSFNIPLVQLVDVPGFLPGVQ-----------QEYGGIIRHGAKMLYAYSE 397
Query: 175 AMV 177
A V
Sbjct: 398 ATV 400
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 18 FDPDESVQDFQECYHSDPVPTLDLGSL-NLEKLGD 51
F PDE++ DF + Y P DLG L EKLG+
Sbjct: 93 FTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGE 127
>pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 1172
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 15/170 (8%)
Query: 107 PALTPSGAALARAPQSINWVE----GFNVPLTQLSDRNQYF-QGQQDPLFDSFRLSLEEY 161
P P+GA+ +P +W E G NV + R QY QG + D+ + +
Sbjct: 177 PLEVPTGAS---SPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAIS 233
Query: 162 GKHMSRIARTIFEAMVRNLHLDSTQSHSDLSESTGLVRVYRYPKFSKADEALGMEVHTDS 221
G +S R+++ A + H Q + + + + R P S D V+++S
Sbjct: 234 G--LSSFQRSLWIAAKQGKH--KVQPPTKQGQKSQR-KARRGPAISSWDWLDISSVNSNS 288
Query: 222 SVLSILNEDQVGGLEVFKDDKWLLVQPIPGSLIVNLGDMMQAISNDEYMS 271
L+ ++ VGG + K+ + L V+ + N D+MQ + D + +
Sbjct: 289 --LAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWAT 336
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 151 FDSFRLSLEEYGKHMSRIARTIFEAMV------RNLHLDSTQSHSDLSESTG 196
+DSFR L+ +G + I R++FE + + L D+ + SDL E G
Sbjct: 134 YDSFRRFLDMFGNVVMDIPRSLFEEKLEHMKESKGLKNDTDLTASDLKELVG 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,997,244
Number of Sequences: 62578
Number of extensions: 402938
Number of successful extensions: 993
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 23
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)