Query 019643
Match_columns 338
No_of_seqs 218 out of 1189
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oox_A Putative 2OG-Fe(II) oxy 100.0 4.2E-71 1.4E-75 514.9 27.1 281 33-320 4-309 (312)
2 1gp6_A Leucoanthocyanidin diox 100.0 2.1E-70 7.2E-75 518.3 26.2 305 3-319 14-344 (356)
3 1w9y_A 1-aminocyclopropane-1-c 100.0 4E-70 1.4E-74 508.9 20.4 281 34-335 2-307 (319)
4 1dcs_A Deacetoxycephalosporin 100.0 2.4E-67 8.3E-72 488.9 22.0 265 33-318 2-303 (311)
5 1odm_A Isopenicillin N synthas 100.0 1.8E-66 6.3E-71 487.2 26.2 270 33-319 6-323 (331)
6 3on7_A Oxidoreductase, iron/as 100.0 5.6E-66 1.9E-70 472.8 24.3 261 34-320 2-277 (280)
7 3dkq_A PKHD-type hydroxylase S 95.7 0.018 6.2E-07 50.6 6.4 78 197-292 100-194 (243)
8 2hbt_A EGL nine homolog 1; pro 93.3 0.3 1E-05 42.9 8.4 79 198-292 119-212 (247)
9 2rg4_A Uncharacterized protein 93.1 2 7E-05 36.6 13.4 43 241-295 166-209 (216)
10 2jig_A Prolyl-4 hydroxylase; h 90.1 0.88 3E-05 39.0 7.7 87 197-293 99-217 (224)
11 3itq_A Prolyl 4-hydroxylase, a 89.3 1.5 5E-05 37.6 8.4 85 197-292 112-211 (216)
12 3s57_A Alpha-ketoglutarate-dep 81.9 8.1 0.00028 32.5 9.2 80 197-290 101-200 (204)
13 2iuw_A Alkylated repair protei 80.7 13 0.00046 31.9 10.4 84 197-292 127-229 (238)
14 3tht_A Alkylated DNA repair pr 71.2 8.5 0.00029 35.3 6.8 93 196-295 198-315 (345)
15 3i3q_A Alpha-ketoglutarate-dep 69.1 8.1 0.00028 32.7 5.8 79 197-291 106-201 (211)
16 2dbn_A Hypothetical protein YB 52.0 10 0.00035 35.9 3.6 52 31-83 96-151 (461)
17 2do1_A Nuclear protein HCC-1; 44.5 23 0.00077 23.1 3.3 38 38-78 7-44 (55)
18 2ld7_A Histone deacetylase com 38.9 48 0.0017 24.1 4.7 56 33-93 16-72 (94)
19 3kt7_A PKHD-type hydroxylase T 30.4 1.6E+02 0.0055 29.0 8.2 104 171-295 105-231 (633)
20 3pnt_A NAD+-glycohydrolase; gl 30.3 23 0.0008 29.6 2.0 32 35-66 210-241 (268)
21 2da7_A Zinc finger homeobox pr 29.2 12 0.00042 25.7 0.2 41 151-191 13-53 (71)
22 1otj_A Alpha-ketoglutarate-dep 28.4 40 0.0014 29.3 3.5 45 34-81 16-64 (283)
23 4f87_A Plycb; lysin, bacteriop 25.0 38 0.0013 21.9 1.9 21 34-54 51-71 (72)
24 2x4k_A 4-oxalocrotonate tautom 24.3 66 0.0022 20.3 3.2 24 164-187 18-41 (63)
25 2opi_A L-fuculose-1-phosphate 22.7 46 0.0016 27.8 2.6 32 35-66 125-160 (212)
26 1oih_A Putative alkylsulfatase 22.5 62 0.0021 28.4 3.6 47 34-83 26-77 (301)
27 3o2g_A Gamma-butyrobetaine dio 21.8 31 0.0011 31.8 1.5 47 35-84 122-173 (388)
28 1zrj_A E1B-55KDA-associated pr 20.5 62 0.0021 20.5 2.2 37 38-77 7-43 (50)
29 2ww6_A Fibritin, T4 fibritin; 20.5 82 0.0028 17.1 2.3 13 235-247 12-24 (27)
30 3abf_A 4-oxalocrotonate tautom 20.5 98 0.0034 19.6 3.4 23 165-187 17-39 (64)
31 4ay7_A Methylcobalamin\: coenz 20.3 1.1E+02 0.0039 27.3 5.0 36 48-83 309-348 (348)
32 1h1j_S THO1 protein; SAP domai 20.2 77 0.0026 20.1 2.6 36 39-77 3-38 (51)
No 1
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=100.00 E-value=4.2e-71 Score=514.93 Aligned_cols=281 Identities=21% Similarity=0.372 Sum_probs=237.3
Q ss_pred CCCCceeeCCCCC------HHHHHHHHhccceEEEecCCCCHHHHHHHHHHHHHHccCCHHHHhhhhcCCCCCcccccCC
Q 019643 33 SDPVPTLDLGSLN------LEKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNLFSFSFESKQRLFTNKPAAVSYFWGT 106 (338)
Q Consensus 33 ~~~iPvIDl~~l~------~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~~~~G~ 106 (338)
+.+||||||+.+. .++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++... .+.++||
T Consensus 4 ~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~----~~~~~Gy 79 (312)
T 3oox_A 4 TSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGV----KGGARGY 79 (312)
T ss_dssp CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSS----GGGTSEE
T ss_pred CCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccC----CCCcccc
Confidence 5679999999873 35899999999999999999999999999999999999999999999752 2234565
Q ss_pred CCCCCCccccccCCCCCCccccccccCCCCCC-c-cccCCCCCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019643 107 PALTPSGAALARAPQSINWVEGFNVPLTQLSD-R-NQYFQGQQDP-LFDSFRLSLEEYGKHMSRIARTIFEAMVRNLHLD 183 (338)
Q Consensus 107 ~~~~~~g~~~~~~~~~~d~~E~~~~~~~~~~~-~-~~~~~~~~~p-~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 183 (338)
. +.|.+........||+|.|+++.+.... + .....+|.|| .+|+||+.+++|+++|.+++..|+++||++||++
T Consensus 80 ~---~~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 156 (312)
T 3oox_A 80 I---PFGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLE 156 (312)
T ss_dssp E---CCCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred c---cccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 3 3344443333457999999987532111 0 0122345566 4789999999999999999999999999999999
Q ss_pred CccchhccCCCccceEeeecCCCCCccccCccccccCCCeEEEEecCCCCceEEE-eCCeEEEeccCCCeEEEEcchhhH
Q 019643 184 STQSHSDLSESTGLVRVYRYPKFSKADEALGMEVHTDSSVLSILNEDQVGGLEVF-KDDKWLLVQPIPGSLIVNLGDMMQ 262 (338)
Q Consensus 184 ~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~g~lTlL~~d~~~GLqV~-~~g~W~~V~p~p~~~vVniGd~l~ 262 (338)
+++|.+.+..+.+.||++||||++.++..+|+++|||+|+||||+||+++||||+ ++|+|++|+|+||++|||+||+||
T Consensus 157 ~~~f~~~~~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~ 236 (312)
T 3oox_A 157 RDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDMLE 236 (312)
T ss_dssp TTTTHHHHTTCCCEEEEEEECCCSSCCC--CEEEECCCSSEEEEECCTTSCEEEECTTSCEEECCCCSSCEEEEECHHHH
T ss_pred HHHHHHHhcCCcceeeeEecCCCCCCcCCcCccceecCceEEEEeEcCcCceEEECCCCcEEECCCCCCeEEEEhHHHHH
Confidence 9999999888889999999999987555599999999999999999999999998 789999999999999999999999
Q ss_pred HHhCCccccccccccCCC----CCCeEEEEEeeCCCCCccccC----------CCCC-CcCHHHHHHHHHHhh
Q 019643 263 AISNDEYMSVKHRVKVNK----NEERHSVCYFVFPGEGSVIRS----------SRYK-PFTYSDFQARVQHDI 320 (338)
Q Consensus 263 ~~TnG~~kst~HRV~~~~----~~~R~Si~~F~~P~~d~~i~p----------~~y~-~~~~~d~~~~~~~~~ 320 (338)
+||||+||||+|||+.+. ..+||||+||++|+.|++|+| ++|+ ++|++||+..+++++
T Consensus 237 ~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~~ 309 (312)
T 3oox_A 237 RLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREI 309 (312)
T ss_dssp HHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHHH
T ss_pred HHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHHHh
Confidence 999999999999996542 467999999999999999974 6899 999999998877754
No 2
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=2.1e-70 Score=518.26 Aligned_cols=305 Identities=26% Similarity=0.467 Sum_probs=248.2
Q ss_pred CCCCCCCceecCCCCCCCCCccccccccCCCCCCceeeCCCCC----------HHHHHHHHhccceEEEecCCCCHHHHH
Q 019643 3 NLESYPPVFRRKHNDFDPDESVQDFQECYHSDPVPTLDLGSLN----------LEKLGDACKNWGLFRLVSHGIPETLMS 72 (338)
Q Consensus 3 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDl~~l~----------~~~l~~A~~~~Gff~l~nhgi~~~~~~ 72 (338)
.+++||+.|+++....+.....-..........||||||+.+. .++|.+||+++|||||+||||+.++++
T Consensus 14 ~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~ 93 (356)
T 1gp6_A 14 GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLME 93 (356)
T ss_dssp TCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHH
T ss_pred CCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHH
Confidence 4678999999874321110000000000012469999999974 248999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHhhhhcCCCCCcccccCCCCCCCCccccccCCCCCCccccccccCCCC--CCccccCCCCCCCC
Q 019643 73 QLRSQAKNLFSFSFESKQRLFTNKPAAVSYFWGTPALTPSGAALARAPQSINWVEGFNVPLTQL--SDRNQYFQGQQDPL 150 (338)
Q Consensus 73 ~~~~~~~~fF~lP~e~K~~~~~~~~~~~~~~~G~~~~~~~g~~~~~~~~~~d~~E~~~~~~~~~--~~~~~~~~~~~~p~ 150 (338)
++++.+++||+||.|+|+++.... ..+.+.||.. .+.. ......||+|.|+++.... ...|.|+. .
T Consensus 94 ~~~~~~~~FF~lP~eeK~~~~~~~--~~~~~~Gy~~---~~~~--~~~~~~d~kE~~~~~~~p~~~~~~~~wP~-----~ 161 (356)
T 1gp6_A 94 RVKKAGEEFFSLSVEEKEKYANDQ--ATGKIQGYGS---KLAN--NASGQLEWEDYFFHLAYPEEKRDLSIWPK-----T 161 (356)
T ss_dssp HHHHHHHHHHTSCHHHHGGGBCBG--GGTBCSEEEC---CCCC--STTCCCCSCEEEEEEEESGGGCCGGGSCC-----S
T ss_pred HHHHHHHHHHCCCHHHHHhhcccc--cccCccccCc---Cccc--CCCCCCChhheeeeecCCccccccccCCC-----c
Confidence 999999999999999999997521 1023345532 1111 1123479999999875322 12344532 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhccC---CCccceEeeecCCCCCccccCccccccCCCeEEEE
Q 019643 151 FDSFRLSLEEYGKHMSRIARTIFEAMVRNLHLDSTQSHSDLS---ESTGLVRVYRYPKFSKADEALGMEVHTDSSVLSIL 227 (338)
Q Consensus 151 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~g~lTlL 227 (338)
+++||+.+++|+++|.+++..||++||++||+++++|.+.+. .+.+.||++|||||+.++..+|+++|||+|+||||
T Consensus 162 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL 241 (356)
T 1gp6_A 162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241 (356)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence 689999999999999999999999999999999999988887 46788999999999987888999999999999999
Q ss_pred ecCCCCceEEEeCCeEEEeccCCCeEEEEcchhhHHHhCCccccccccccCCCCCCeEEEEEeeCCCCCc-cccC-----
Q 019643 228 NEDQVGGLEVFKDDKWLLVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKVNKNEERHSVCYFVFPGEGS-VIRS----- 301 (338)
Q Consensus 228 ~~d~~~GLqV~~~g~W~~V~p~p~~~vVniGd~l~~~TnG~~kst~HRV~~~~~~~R~Si~~F~~P~~d~-~i~p----- 301 (338)
+||.++||||+++|+|++|+|+||++|||+||+||+||||+||||+|||+.++..+||||+||++|+.|+ +|+|
T Consensus 242 ~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~ 321 (356)
T 1gp6_A 242 LHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV 321 (356)
T ss_dssp EECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred EEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhc
Confidence 9999999999999999999999999999999999999999999999999888888999999999999999 8864
Q ss_pred -----CCCCCcCHHHHHHHHHHh
Q 019643 302 -----SRYKPFTYSDFQARVQHD 319 (338)
Q Consensus 302 -----~~y~~~~~~d~~~~~~~~ 319 (338)
++|+++|++||+..++..
T Consensus 322 ~~~~p~~y~~~t~~eyl~~~~~~ 344 (356)
T 1gp6_A 322 SVESPAKFPPRTFAQHIEHKLFG 344 (356)
T ss_dssp CSSSCCSSCCEEHHHHHHHHHHH
T ss_pred CCCCCccCCCccHHHHHHHHHHh
Confidence 689999999999876663
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=100.00 E-value=4e-70 Score=508.87 Aligned_cols=281 Identities=27% Similarity=0.521 Sum_probs=238.3
Q ss_pred CCCceeeCCCCC-------HHHHHHHHhccceEEEecCCCCHHHHHHHHHHHHHHccCCHHHHhhhhcCCCCCcccccCC
Q 019643 34 DPVPTLDLGSLN-------LEKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNLFSFSFESKQRLFTNKPAAVSYFWGT 106 (338)
Q Consensus 34 ~~iPvIDl~~l~-------~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~~~~G~ 106 (338)
..||||||+.+. .++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++... .. ||
T Consensus 2 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~---~~----Gy 74 (319)
T 1w9y_A 2 ENFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVA---SK----AL 74 (319)
T ss_dssp CCCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HH
T ss_pred CCCCEEECcccCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC---CC----CC
Confidence 469999999873 24899999999999999999999999999999999999999999998641 11 33
Q ss_pred CCCCCCccccccCCCCCCccccccccCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 019643 107 PALTPSGAALARAPQSINWVEGFNVPLTQLSDRNQYFQGQQDPLFDSFRLSLEEYGKHMSRIARTIFEAMVRNLHLDSTQ 186 (338)
Q Consensus 107 ~~~~~~g~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~p~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 186 (338)
.++ +.+. ...||+|.|.++..+....|.|+. .+++||+.+++|+++|.+++..|+++||++||+++++
T Consensus 75 ~~~---~~e~----~~~d~ke~~~~~~~p~~~~~~wP~-----~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 142 (319)
T 1w9y_A 75 EGV---QAEV----TDMDWESTFFLKHLPISNISEVPD-----LDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGY 142 (319)
T ss_dssp TTC---CCCG----GGCCCCEEEEEEEESCCGGGGCTT-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTH
T ss_pred Ccc---cccC----CCCChhhheeeecCCccccccccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 222 2111 247899999987543333455542 4689999999999999999999999999999999999
Q ss_pred chhccCC---CccceEeeecCCCCCccccCccccccCCCeEEEEecC-CCCceEEEeCCeEEEeccCCCeEEEEcchhhH
Q 019643 187 SHSDLSE---STGLVRVYRYPKFSKADEALGMEVHTDSSVLSILNED-QVGGLEVFKDDKWLLVQPIPGSLIVNLGDMMQ 262 (338)
Q Consensus 187 ~~~~~~~---~~~~lr~~~Yp~~~~~~~~~~~~~HtD~g~lTlL~~d-~~~GLqV~~~g~W~~V~p~p~~~vVniGd~l~ 262 (338)
|.+.+.. +.+.||++|||||+.++...|+++|||+|+||||+|| .++||||+++|+|++|+|+||++|||+||+||
T Consensus 143 f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~ 222 (319)
T 1w9y_A 143 LKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLE 222 (319)
T ss_dssp HHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHH
T ss_pred HHHHhcCcCCccceeEEEecCCCcccccccccccccCCCceEEEEecCCCCeeeEeeCCeEEEcccCCCcEEEEhHHHHH
Confidence 9887763 4578999999999988888999999999999999995 79999999999999999999999999999999
Q ss_pred HHhCCccccccccccCCCCCCeEEEEEeeCCCCCcccc-------------CCCCCCcCHHHHHHHHHHhhhhcCcccc-
Q 019643 263 AISNDEYMSVKHRVKVNKNEERHSVCYFVFPGEGSVIR-------------SSRYKPFTYSDFQARVQHDIKTLGFKVG- 328 (338)
Q Consensus 263 ~~TnG~~kst~HRV~~~~~~~R~Si~~F~~P~~d~~i~-------------p~~y~~~~~~d~~~~~~~~~~~~g~~~~- 328 (338)
+||||+||||.|||+.+++.+|||++||++|+.|++|+ |++|+++|++||+..++. ..+..+..
T Consensus 223 ~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~--~~~~~~~~~ 300 (319)
T 1w9y_A 223 VITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAG--LKFQAKEPR 300 (319)
T ss_dssp HHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTT--TTCSSHHHH
T ss_pred HHhCCeeecccceecCCCCCCceEEEEEecCCCCCeEeCchhhcCcccccCccccCcEeHHHHHHHHHh--hhcCcchhH
Confidence 99999999999999888888999999999999999885 458999999999987665 34444444
Q ss_pred ccccccC
Q 019643 329 LQRFKIS 335 (338)
Q Consensus 329 ~~~~~~~ 335 (338)
++.+||.
T Consensus 301 ~~~~~~~ 307 (319)
T 1w9y_A 301 FEAMKAM 307 (319)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 4566654
No 4
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=100.00 E-value=2.4e-67 Score=488.95 Aligned_cols=265 Identities=15% Similarity=0.244 Sum_probs=216.4
Q ss_pred CCCCceeeCCCCC----HHHHHHHHhccceEEEecCCCCHHHHHHHHHHHHHHccCC-HHHHhhhhcCCCCCcccccCCC
Q 019643 33 SDPVPTLDLGSLN----LEKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNLFSFS-FESKQRLFTNKPAAVSYFWGTP 107 (338)
Q Consensus 33 ~~~iPvIDl~~l~----~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lP-~e~K~~~~~~~~~~~~~~~G~~ 107 (338)
...||||||+.+. .++|.+||+++|||||+||||+.++++++++.+++||+|| .|+|+++.... .+.++||.
T Consensus 2 ~~~iPvIDls~l~~~~~~~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~---~~~~~Gy~ 78 (311)
T 1dcs_A 2 DTTVPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPV---PTMRRGFT 78 (311)
T ss_dssp CCCCCEEEHHHHHTTCSHHHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSS---CCSSSEEE
T ss_pred CCCCcEEEchhhcCCCHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccC---CCCCCcee
Confidence 3579999998762 3599999999999999999999999999999999999999 99999998521 12234553
Q ss_pred CCCCCccccc----cCCCCCCccccccccCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 019643 108 ALTPSGAALA----RAPQSINWVEGFNVPLTQLSDRNQYFQGQQDPLFDSFRLSLEEYGKHMSRIARTIFEAMVRNLHL- 182 (338)
Q Consensus 108 ~~~~~g~~~~----~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~p~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl- 182 (338)
+.+.+.. ......||+|.|+++.. + +.|| +++||+.+++|+++|.+++..|+++|+++||+
T Consensus 79 ---~~~~e~~~~~~~~~~~~d~~E~~~~~~~----~------n~wP-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 144 (311)
T 1dcs_A 79 ---GLESESTAQITNTGSYSDYSMCYSMGTA----D------NLFP-SGDFERIWTQYFDRQYTASRAVAREVLRATGTE 144 (311)
T ss_dssp ---EC-----------------CEEEEECSS----S------CCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ---eccccccccccCCCCCCCcceeeeccCC----C------CCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2333222 22235799999999764 2 3456 79999999999999999999999999999999
Q ss_pred ---CCccchhccCCCccceEeeecCCCCCcc--c--cCccccccCCCeEEEEecC-CCCc---eEEEeCCeEEEeccCCC
Q 019643 183 ---DSTQSHSDLSESTGLVRVYRYPKFSKAD--E--ALGMEVHTDSSVLSILNED-QVGG---LEVFKDDKWLLVQPIPG 251 (338)
Q Consensus 183 ---~~~~~~~~~~~~~~~lr~~~Yp~~~~~~--~--~~~~~~HtD~g~lTlL~~d-~~~G---LqV~~~g~W~~V~p~p~ 251 (338)
++++|.+. .+.||++||||++.++ + .+|+++|||+|+||||+|| .++| |||+.+|+|++|+|+||
T Consensus 145 ~~~~~~~f~~~----~~~lrl~~YPp~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~v~G~~~LqV~~~g~W~~V~p~pg 220 (311)
T 1dcs_A 145 PDGGVEAFLDC----EPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 220 (311)
T ss_dssp CTTCHHHHHSC----CCEEEEEEECC-----------CCEEEEEECSSEEEEEEECCTTCCCCEEEEETTEEEECCCCTT
T ss_pred CcCcHhHHhhc----chhhheecCCCCCcccccCccccccccccCCCeEEEEecCCCCCCceeEEEEeCCEEEeCcCCCC
Confidence 66666544 6789999999998653 3 6789999999999999998 8999 99999999999999999
Q ss_pred eEEEEcchhhHHHhCCccccccccccCCC-----CCCeEEEEEeeCCCCCcccc---------CCCC--CCcCHHHHHHH
Q 019643 252 SLIVNLGDMMQAISNDEYMSVKHRVKVNK-----NEERHSVCYFVFPGEGSVIR---------SSRY--KPFTYSDFQAR 315 (338)
Q Consensus 252 ~~vVniGd~l~~~TnG~~kst~HRV~~~~-----~~~R~Si~~F~~P~~d~~i~---------p~~y--~~~~~~d~~~~ 315 (338)
++|||+||+||+||||+||||+|||+.++ ..+||||+||++|+.|++|+ |++| +++|++||+..
T Consensus 221 ~lvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~~R~Si~~F~~p~~d~~i~l~~~~~~~~p~~y~~~~~t~~ey~~~ 300 (311)
T 1dcs_A 221 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNADFTFSVPLARECGFDVSLDGETATFQDWIGG 300 (311)
T ss_dssp CEEEEECHHHHHHTTSCSCCCCEEECCC----CTTCCEEEEEEEECCCTTCEEEHHHHHHTTCCCCCCSSEEEHHHHHCS
T ss_pred eEEEEHHHHHHHHhCCcccCCCceEeCCCcccCCCCCeEEEEEEEcCCCCcEEeCCcccCCCCccccCCCCccHHHHHHH
Confidence 99999999999999999999999998776 67899999999999999986 6899 99999999876
Q ss_pred HHH
Q 019643 316 VQH 318 (338)
Q Consensus 316 ~~~ 318 (338)
+++
T Consensus 301 ~~~ 303 (311)
T 1dcs_A 301 NYV 303 (311)
T ss_dssp SCC
T ss_pred HHH
Confidence 544
No 5
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=100.00 E-value=1.8e-66 Score=487.21 Aligned_cols=270 Identities=24% Similarity=0.310 Sum_probs=228.6
Q ss_pred CCCCceeeCCCCC----------HHHHHHHHhccceEEEecCCCCHHHHHHHHHHHHHH-ccCCHHHHhhhhcCCCCCcc
Q 019643 33 SDPVPTLDLGSLN----------LEKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNL-FSFSFESKQRLFTNKPAAVS 101 (338)
Q Consensus 33 ~~~iPvIDl~~l~----------~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f-F~lP~e~K~~~~~~~~~~~~ 101 (338)
...||||||+.+. .++|.+||+++|||||+|||| +++++++.+++| |+||.|+|+++..
T Consensus 6 ~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~------- 75 (331)
T 1odm_A 6 KANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAI------- 75 (331)
T ss_dssp BCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBC-------
T ss_pred CCCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhh-------
Confidence 4679999999873 248999999999999999999 999999999999 9999999999973
Q ss_pred cccCCCCCCCCccccccC------CCCCCccccccccCCCCCCc------cccCCCCCCCC---hhhHHHHHHHHHHHHH
Q 019643 102 YFWGTPALTPSGAALARA------PQSINWVEGFNVPLTQLSDR------NQYFQGQQDPL---FDSFRLSLEEYGKHMS 166 (338)
Q Consensus 102 ~~~G~~~~~~~g~~~~~~------~~~~d~~E~~~~~~~~~~~~------~~~~~~~~~p~---~~~fr~~~~~y~~~~~ 166 (338)
+||.++ |.+.... ....||+|.|+++.+..... .....+|.||. +++||+.+++|+++|.
T Consensus 76 --~Gy~~~---~~e~~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~ 150 (331)
T 1odm_A 76 --RAYNKE---HQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVF 150 (331)
T ss_dssp --TTTCTT---CTTCSSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHH
T ss_pred --cCCCcC---CccccccccccccCCCCChhheEecccCCccccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHH
Confidence 244322 2221111 12479999999986432110 00112355553 7999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccchhccCCCccceE--eeecC------C---CCCccc-cCccccccCCCeEEEEecCCCCc
Q 019643 167 RIARTIFEAMVRNLHLDSTQSHSDLSESTGLVR--VYRYP------K---FSKADE-ALGMEVHTDSSVLSILNEDQVGG 234 (338)
Q Consensus 167 ~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr--~~~Yp------~---~~~~~~-~~~~~~HtD~g~lTlL~~d~~~G 234 (338)
+++..|+++||++||+++++|.+.+..+.+.|| ++||| | |+.++. .+|+++|||+|+||||+||.++|
T Consensus 151 ~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lr~~l~~YP~~~~~~p~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~v~G 230 (331)
T 1odm_A 151 GLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQN 230 (331)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTGGGCCTTTCCCEEEEEEECCCSSCCGGGCEECTTSCEEEEEEECCSSSEEEEEECSSCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCcHHHHHHHHhhCCCcccccccccCCCccccccccccccCCCeEEEEeeCCCCC
Confidence 999999999999999999999999988889999 99999 7 665555 88999999999999999999999
Q ss_pred eEEE-eCCeEEEeccCCCeEEEEcchhhHHHhCCccccccccccCCCCCCeEEEEEeeCCCCCccccC---------CCC
Q 019643 235 LEVF-KDDKWLLVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKVNKNEERHSVCYFVFPGEGSVIRS---------SRY 304 (338)
Q Consensus 235 LqV~-~~g~W~~V~p~p~~~vVniGd~l~~~TnG~~kst~HRV~~~~~~~R~Si~~F~~P~~d~~i~p---------~~y 304 (338)
|||+ ++| |++|+|+||++|||+||+||+||||+||||+|||+ +++.+||||+||++|+.|++|+| ++|
T Consensus 231 LQV~~~~g-Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv-~~~~~R~Sia~F~~P~~d~~i~pl~~~~~~~~~~y 308 (331)
T 1odm_A 231 LQVETAAG-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVK-WVNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDR 308 (331)
T ss_dssp EEEEETTE-EEECCCCTTSEEEEECHHHHHHTTTSSCCCCEEEE-CCCSCEEEEEEEECCCTTCBCCCCCTTSTTCCCSS
T ss_pred EEEEcCCC-eEECCCCCCeEEEEccHHHHHHhCCEeeCCCceeC-CCCCCEEEEEEEEcCCCCCEEeCCCccccccccCC
Confidence 9999 678 99999999999999999999999999999999996 45789999999999999999986 479
Q ss_pred CCcCHHHHHHHHHHh
Q 019643 305 KPFTYSDFQARVQHD 319 (338)
Q Consensus 305 ~~~~~~d~~~~~~~~ 319 (338)
+++|++||+..+++.
T Consensus 309 ~~~t~~e~l~~~~~~ 323 (331)
T 1odm_A 309 EPLSYGDYLQNGLVS 323 (331)
T ss_dssp CCCBHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 999999999887663
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=100.00 E-value=5.6e-66 Score=472.79 Aligned_cols=261 Identities=21% Similarity=0.330 Sum_probs=215.9
Q ss_pred CCCceeeCCCCC-HHHHHHHHhccceEEEecCCCCHHHHHHHHHHHHHHccCCHHHHhhhhcCCCCCcccccCCCCCCCC
Q 019643 34 DPVPTLDLGSLN-LEKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNLFSFSFESKQRLFTNKPAAVSYFWGTPALTPS 112 (338)
Q Consensus 34 ~~iPvIDl~~l~-~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~~~~G~~~~~~~ 112 (338)
.+||||||+... .++|.+||+++|||||+||||+.++++++++.+++||+| |+|+++..+.. ..+||.+ .
T Consensus 2 ~~IPvIDls~~~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~l--e~K~k~~~~~~----~~~GY~~---~ 72 (280)
T 3on7_A 2 MKLETIDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFMFNRE----THDGFFP---A 72 (280)
T ss_dssp --CCEEETTSTTHHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTS--GGGGGGBCCTT----TCCEEEC---C
T ss_pred CCCCEEECCChhHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhh--HHHHHhccCCC----CCCcccc---C
Confidence 369999999876 469999999999999999999999999999999999998 79999875322 2345432 2
Q ss_pred c-cccccCCCCCCccccccccCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cc---
Q 019643 113 G-AALARAPQSINWVEGFNVPLTQLSDRNQYFQGQQDPLFDSFRLSLEEYGKHMSRIARTIFEAMVRNLHLDS--TQ--- 186 (338)
Q Consensus 113 g-~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~p~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~--~~--- 186 (338)
+ .+...+....||+|.|++.. |+ ..+++||+.+++|+++|.+++.+||++||++||++. .+
T Consensus 73 ~~~e~~~~~~~~D~kE~~~~~p--------~~-----~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~ 139 (280)
T 3on7_A 73 SISETAKGHTVKDIKEYYHVYP--------WG-----RIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIP 139 (280)
T ss_dssp C--------CCCCSCEEEEECT--------TS-----CCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTTCSSC
T ss_pred ccccccCCCCcccHHHHHhcCC--------CC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhHH
Confidence 2 22222223479999988731 21 134799999999999999999999999999999762 32
Q ss_pred chhccCCCc-cceEeeecCCCCCcc--ccCccccccCCCeEEEEecCCCCceEEE-eCCeEEEeccCCCeEEEEcchhhH
Q 019643 187 SHSDLSEST-GLVRVYRYPKFSKAD--EALGMEVHTDSSVLSILNEDQVGGLEVF-KDDKWLLVQPIPGSLIVNLGDMMQ 262 (338)
Q Consensus 187 ~~~~~~~~~-~~lr~~~Yp~~~~~~--~~~~~~~HtD~g~lTlL~~d~~~GLqV~-~~g~W~~V~p~p~~~vVniGd~l~ 262 (338)
+.+.+.++. +.||++||||++.++ ..+|+++|||+|+||||+||+++||||+ ++|+|++|+|+||++|||+||+||
T Consensus 140 ~~~~~~~~~~~~lr~~~YP~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~ 219 (280)
T 3on7_A 140 LPEMIANSHKTLLRILHYPPMTGDEEMGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDMLQ 219 (280)
T ss_dssp HHHHHTTCSSCEEEEEEECCCCTTCCCCSEEEEEECCCSSEEEEECCSCCCEEEECTTSCEEECCCCTTCEEEEECHHHH
T ss_pred HHHHhcCCccceEEEEECCCCCCccccCcccccCCCCCCeEEEEEecCCCCeEEEcCCCCEEECcCCCCEEEEEcChHHH
Confidence 445555554 889999999998654 5789999999999999999999999999 689999999999999999999999
Q ss_pred HHhCCccccccccccCCC----CCCeEEEEEeeCCCCCccccCCCCCCcCHHHHHHHHHHhh
Q 019643 263 AISNDEYMSVKHRVKVNK----NEERHSVCYFVFPGEGSVIRSSRYKPFTYSDFQARVQHDI 320 (338)
Q Consensus 263 ~~TnG~~kst~HRV~~~~----~~~R~Si~~F~~P~~d~~i~p~~y~~~~~~d~~~~~~~~~ 320 (338)
+||||+||||+|||+.++ ..+||||+||++|+.|++|+| ++|++||+.++++++
T Consensus 220 ~~Tng~~kS~~HRVv~~~~~~~~~~R~Si~~F~~P~~d~~i~p----~ita~~~l~~rl~~~ 277 (280)
T 3on7_A 220 EASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLSE----RYTADSYLMERLREL 277 (280)
T ss_dssp HHTTTSSCCCCEEEECCTTCCTTSCEEECCEEECCCTTCBCSS----SCBHHHHHHHHHHHT
T ss_pred HHhCCcccCCCceEeCCCCCCCCCCeEEEEEEEcCCCCCEECC----CccHHHHHHHHHHHh
Confidence 999999999999997653 468999999999999999986 699999999888765
No 7
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=95.67 E-value=0.018 Score=50.59 Aligned_cols=78 Identities=22% Similarity=0.188 Sum_probs=52.2
Q ss_pred ceEeeecCCCCCccccCccccccCCC-----------eEEEEe--cC---CCCc-eEEEeCCeEEEeccCCCeEEEEcch
Q 019643 197 LVRVYRYPKFSKADEALGMEVHTDSS-----------VLSILN--ED---QVGG-LEVFKDDKWLLVQPIPGSLIVNLGD 259 (338)
Q Consensus 197 ~lr~~~Yp~~~~~~~~~~~~~HtD~g-----------~lTlL~--~d---~~~G-LqV~~~g~W~~V~p~p~~~vVniGd 259 (338)
-+++++|.+.. -..+|.|.. .+|+++ .+ ..|| |.+.....=..|.|..|.+|+.-.
T Consensus 100 ~~~~~rY~~G~------~y~~H~D~~~~~~~~~~~~r~~T~~lYLndp~~~~GGetvf~~~~~~~~V~P~~G~~v~F~s- 172 (243)
T 3dkq_A 100 PPLFNRYQGGE------TFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPS- 172 (243)
T ss_dssp EEEEEEECTTC------EEEEECBCSEEEETTEEEECCEEEEEECSCGGGEEECCEEEEETTEEEEECCCTTCEEEEET-
T ss_pred cceEEEECCCC------eeccCCCCCCCCCCCccccceEEEEEEeCCCCCCCCceEEEeeCCCcEEEecCCCEEEEECC-
Confidence 47888997742 255666653 455554 33 1334 656555445789999999998742
Q ss_pred hhHHHhCCccccccccccCCCCCCeEEEEEeeC
Q 019643 260 MMQAISNDEYMSVKHRVKVNKNEERHSVCYFVF 292 (338)
Q Consensus 260 ~l~~~TnG~~kst~HRV~~~~~~~R~Si~~F~~ 292 (338)
.++|+|..-....|+++..+++
T Consensus 173 -----------~~lH~v~pV~~G~R~~~~~Wi~ 194 (243)
T 3dkq_A 173 -----------SSLHQVTPVLSGERTAAFMWLQ 194 (243)
T ss_dssp -----------TSEEEECCEEEECEEEEEEEEE
T ss_pred -----------CCeEcCccccccCEEEEEEehh
Confidence 3699994334569999999886
No 8
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=93.25 E-value=0.3 Score=42.85 Aligned_cols=79 Identities=22% Similarity=0.366 Sum_probs=54.1
Q ss_pred eEeeecCCCCCccccCccccccCCC-----eEEEEe--cC-C----CCc-eEEEeCC--eEEEeccCCCeEEEEcchhhH
Q 019643 198 VRVYRYPKFSKADEALGMEVHTDSS-----VLSILN--ED-Q----VGG-LEVFKDD--KWLLVQPIPGSLIVNLGDMMQ 262 (338)
Q Consensus 198 lr~~~Yp~~~~~~~~~~~~~HtD~g-----~lTlL~--~d-~----~~G-LqV~~~g--~W~~V~p~p~~~vVniGd~l~ 262 (338)
+.+.+|++. .-....|.|.. .+|+++ .+ . .|| |.++.++ ....|.|..|.+|+.-.+.
T Consensus 119 ~~~~~Y~~~-----G~~y~~H~D~~~~~~R~~T~vlYLN~~w~~~~~GG~l~~~~~~~~~~~~v~P~~grlv~F~s~~-- 191 (247)
T 2hbt_A 119 AMVACYPGN-----GTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDR-- 191 (247)
T ss_dssp EEEEEECSS-----SCCEEEECSSCSCCSEEEEEEEECBTTCCHHHHBCCEEECCTTCSSCEEECCBTTEEEEEECST--
T ss_pred EEEEEecCC-----CCcccccccCCCCCCceEEEEEEeCCCCCCCCCceeEEEecCCCCceEEEEcCCCEEEEEecCC--
Confidence 567888762 12456677762 677776 22 1 244 6777544 6789999999999886431
Q ss_pred HHhCCccccccccccCCCCCCeEEEEEeeC
Q 019643 263 AISNDEYMSVKHRVKVNKNEERHSVCYFVF 292 (338)
Q Consensus 263 ~~TnG~~kst~HRV~~~~~~~R~Si~~F~~ 292 (338)
-++|.|. +....|+||+..+.
T Consensus 192 --------~~~H~V~-p~~~~R~sit~W~~ 212 (247)
T 2hbt_A 192 --------RNPHEVQ-PAYATRYAITVWYF 212 (247)
T ss_dssp --------TCCEEEC-CBSSCEEEEEEEEE
T ss_pred --------Cceeeec-cCCCEEEEEEEEEc
Confidence 1689994 45679999998764
No 9
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=93.14 E-value=2 Score=36.59 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=32.5
Q ss_pred CeEEEeccCCCeEEEEcchhhHHHhCCccccccccccCCC-CCCeEEEEEeeCCCC
Q 019643 241 DKWLLVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVKVNK-NEERHSVCYFVFPGE 295 (338)
Q Consensus 241 g~W~~V~p~p~~~vVniGd~l~~~TnG~~kst~HRV~~~~-~~~R~Si~~F~~P~~ 295 (338)
..+..|.|.+|.+||.-+. -.|.|..+. ..+|+||+|-+.+..
T Consensus 166 ~~~~~i~P~~G~lvlFpS~------------l~H~V~p~~~~~~RiSIsFN~~~~~ 209 (216)
T 2rg4_A 166 RTFRSVAPKVGDVLLWESW------------LRHEVPMNMAEEDRISVSFNYAWGE 209 (216)
T ss_dssp CSEEEECCCTTEEEEEETT------------SCEEECCCCSSSCEEEEEEEEEC--
T ss_pred CCeeEecCCCCeEEEECCC------------CEEeccCCCCCCCEEEEEEEeecCC
Confidence 3567899999999988663 379995443 468999999988765
No 10
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=90.07 E-value=0.88 Score=38.98 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=53.1
Q ss_pred ceEeeecCCCCCccccCccccccCC--------------CeEEEEe--cC-CCCc-eEEEeCC-------------eEEE
Q 019643 197 LVRVYRYPKFSKADEALGMEVHTDS--------------SVLSILN--ED-QVGG-LEVFKDD-------------KWLL 245 (338)
Q Consensus 197 ~lr~~~Yp~~~~~~~~~~~~~HtD~--------------g~lTlL~--~d-~~~G-LqV~~~g-------------~W~~ 245 (338)
-+++++|.+.. ...+|.|+ ..+|+|+ .| ..|| +.+...+ .-+.
T Consensus 99 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~c~~~~~~ 172 (224)
T 2jig_A 99 GLQVLHYHDGQ------KYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLA 172 (224)
T ss_dssp CCEEEEEETTC------CEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSSCCCSTTSCTTGGGSEE
T ss_pred ceEEEecCCCc------cccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcccccccccccccccCceE
Confidence 47788887632 24566664 2578776 33 2344 3332211 2489
Q ss_pred eccCCCeEEEEcchhhHHHhCCcc-ccccccccCCCCCCeEEEEEeeCC
Q 019643 246 VQPIPGSLIVNLGDMMQAISNDEY-MSVKHRVKVNKNEERHSVCYFVFP 293 (338)
Q Consensus 246 V~p~p~~~vVniGd~l~~~TnG~~-kst~HRV~~~~~~~R~Si~~F~~P 293 (338)
|.|..|.+|+.-- ...+|.. ..++|+|.......||++..+++-
T Consensus 173 V~P~~G~al~f~~----~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~ 217 (224)
T 2jig_A 173 VKPIKGDALMFYS----LKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 217 (224)
T ss_dssp ECCCTTCEEEEES----BCTTSCBCGGGCEEECCEEESEEEEEEEEEES
T ss_pred EecccCcEEEEEe----eCCCCCCCCCCcccCCccccceEEEEEEeEEc
Confidence 9999999887642 1123332 678999943334689999988763
No 11
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=89.26 E-value=1.5 Score=37.55 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=51.6
Q ss_pred ceEeeecCCCCCccccCccccccCCC-----------eEEEEe--cC-CCCceEEEeCCeEEEeccCCCeEEEEcchhhH
Q 019643 197 LVRVYRYPKFSKADEALGMEVHTDSS-----------VLSILN--ED-QVGGLEVFKDDKWLLVQPIPGSLIVNLGDMMQ 262 (338)
Q Consensus 197 ~lr~~~Yp~~~~~~~~~~~~~HtD~g-----------~lTlL~--~d-~~~GLqV~~~g~W~~V~p~p~~~vVniGd~l~ 262 (338)
.+++++|.+.. ...+|.|+. .+|+++ .| ..||=-+..+. =+.|.|..|.+|+.-.-
T Consensus 112 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~-~~~V~P~~G~al~f~~~--- 181 (216)
T 3itq_A 112 GLHILNYEVDQ------QYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKL-NLSVHPRKGMAVYFEYF--- 181 (216)
T ss_dssp CCEEEEECBTC------CEEEECSSCCTTSGGGGGCEEEEEEEECSCCSEECCEEETTT-TEEECCCTTCEEEEECC---
T ss_pred ceeEEEeCCCC------ccccccCCCcCCCcccCCceEEEEEEecccCCcCceeEecCC-CCEEecCCCeEEEEecc---
Confidence 47788886642 245676653 477776 33 23443333332 27899999998876431
Q ss_pred HHhCCc-cccccccccCCCCCCeEEEEEeeC
Q 019643 263 AISNDE-YMSVKHRVKVNKNEERHSVCYFVF 292 (338)
Q Consensus 263 ~~TnG~-~kst~HRV~~~~~~~R~Si~~F~~ 292 (338)
..+|. -..++|+|.......|+++..+++
T Consensus 182 -~~~g~~d~~~lH~~~PV~~G~K~v~~~W~~ 211 (216)
T 3itq_A 182 -YQDQSLNELTLHGGAPVTKGEKWIATQWVR 211 (216)
T ss_dssp -CSSHHHHHTTCEEECCEEESCEEEEEEEEE
T ss_pred -CCCCCCCCccccccceeccccEEEEEeeEe
Confidence 01222 246899994333468999988775
No 12
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=81.87 E-value=8.1 Score=32.49 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=50.0
Q ss_pred ceEeeecCCCCCccccCccccccCCC--------eEEEEecCCCCceEEEeC----------CeEEEeccCCCeEEEEcc
Q 019643 197 LVRVYRYPKFSKADEALGMEVHTDSS--------VLSILNEDQVGGLEVFKD----------DKWLLVQPIPGSLIVNLG 258 (338)
Q Consensus 197 ~lr~~~Yp~~~~~~~~~~~~~HtD~g--------~lTlL~~d~~~GLqV~~~----------g~W~~V~p~p~~~vVniG 258 (338)
.+-+|+|.+.. -++++|.|-. .++|-+- ...-+.+... +..+.+...+|+++|.-|
T Consensus 101 ~~LvN~Y~~G~-----d~i~~H~D~~~~~~~~~~IasvSLG-~~~~f~~~~~~~~~~~~~~~~~~~~~~L~~GsllvM~g 174 (204)
T 3s57_A 101 FVLINRYKDGS-----DHICEHRDDERELAPGSPIASVSFG-ASRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNH 174 (204)
T ss_dssp EEEEEEESSTT-----CCEEEECCCCTTBCTTCCEEEEEEE-SCEEEEEEEGGGCSSSCSCCCCCEEEEECTTEEEEEET
T ss_pred eeEEEEECCCC-----CcccceecChhhccCCCcEEEEECC-CceEEEEEEcCCCccccccCCceEEEECCCCCEEEECc
Confidence 34588997743 3688888862 2233332 1122344321 257889999999999999
Q ss_pred hhhHHHhCCccccccccccCC--CCCCeEEEEEe
Q 019643 259 DMMQAISNDEYMSVKHRVKVN--KNEERHSVCYF 290 (338)
Q Consensus 259 d~l~~~TnG~~kst~HRV~~~--~~~~R~Si~~F 290 (338)
++=..|. |.|... ....|+|+.|-
T Consensus 175 ~~q~~w~--------H~Ip~~~~~~~~RislTFR 200 (204)
T 3s57_A 175 PTNTHWY--------HSLPVRKKVLAPRVNLTFR 200 (204)
T ss_dssp THHHHEE--------EEECCCTTCCSCEEEEEEE
T ss_pred hhhheeE--------eeccccCCCCCCEEEEEee
Confidence 8766664 555211 24689999984
No 13
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=80.70 E-value=13 Score=31.92 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=52.6
Q ss_pred ceEeeecCCCCCccccCccccccCCC--------eEEEEecCCCCceEEEe-C----------CeEEEeccCCCeEEEEc
Q 019643 197 LVRVYRYPKFSKADEALGMEVHTDSS--------VLSILNEDQVGGLEVFK-D----------DKWLLVQPIPGSLIVNL 257 (338)
Q Consensus 197 ~lr~~~Yp~~~~~~~~~~~~~HtD~g--------~lTlL~~d~~~GLqV~~-~----------g~W~~V~p~p~~~vVni 257 (338)
.+-+|+|.+.. -++++|.|-. ..||-+-. ..=+.+.. . +..+.+...+|+++|.-
T Consensus 127 ~~LvN~Y~~G~-----d~i~~H~D~~~~~~~~~~IaslSLG~-~~~f~f~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~ 200 (238)
T 2iuw_A 127 SLLCNLYRNEK-----DSVDWHSDDEPSLGRCPIIASLSFGA-TRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIME 200 (238)
T ss_dssp EEEEEEECSTT-----CCEEEECCCCGGGCSSCCEEEEEEES-CEEEEEEECCC--------CCCEEEEEECTTCEEEEE
T ss_pred EEEEEEECCCC-----CceeCCcCChhhcCCCCcEEEEECCC-CEEEEEeccCCccccCcccCCceEEEEcCCCCEEEEC
Confidence 45689997742 3688888842 33333321 12233332 1 36899999999999999
Q ss_pred chhhHHHhCCccccccccccCCCCCCeEEEEEeeC
Q 019643 258 GDMMQAISNDEYMSVKHRVKVNKNEERHSVCYFVF 292 (338)
Q Consensus 258 Gd~l~~~TnG~~kst~HRV~~~~~~~R~Si~~F~~ 292 (338)
|++=..|..|.-+. ......|+|+.|=.-
T Consensus 201 G~~r~~w~H~I~~~------~~~~~~RIsLTfR~v 229 (238)
T 2iuw_A 201 GATQADWQHRVPKE------YHSREPRVNLTFRTV 229 (238)
T ss_dssp ETHHHHEEEEECCC------SSCCCCEEEEEEECC
T ss_pred hhhhCccEecCCCc------CCCCCCEEEEEeeec
Confidence 99766665443221 113568999999653
No 14
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=71.16 E-value=8.5 Score=35.26 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=60.3
Q ss_pred cceEeeecCCCCCccccCccccccCCC------eEEEEecCCCCceEEE-eCCeEEEeccCCCeEEEEcchhhHHHhCCc
Q 019643 196 GLVRVYRYPKFSKADEALGMEVHTDSS------VLSILNEDQVGGLEVF-KDDKWLLVQPIPGSLIVNLGDMMQAISNDE 268 (338)
Q Consensus 196 ~~lr~~~Yp~~~~~~~~~~~~~HtD~g------~lTlL~~d~~~GLqV~-~~g~W~~V~p~p~~~vVniGd~l~~~TnG~ 268 (338)
..+-+|.|.+. -++++|.|-. .+|+-+- +..-+.+. ++|.++.+...+|+++|.-|++=..|..|.
T Consensus 198 n~~lvN~Y~~G------~~I~~H~D~~~~~~~~I~slSLG-~~~~f~f~~~~~~~~~l~L~~gsLlvM~G~~r~~w~H~I 270 (345)
T 3tht_A 198 DQMTINQYEPG------QGIPAHIDTHSAFEDEIVSLSLG-SEIVMDFKHPDGIAVPVMLPRRSLLVMTGESRYLWTHGI 270 (345)
T ss_dssp SEEEEEEECTT------CCEEEECCCTTTBCSCEEEEEES-SCEEEEEECTTSCEEEEEECTTEEEEECTHHHHTSEEEE
T ss_pred CEEEEEEecCC------CCEeeccCCchhcCCeEEEEECC-CceeEEEccCCCceEEEEcCCCcEEEEChHHhhceEccC
Confidence 34568899763 2789999884 3333332 12234444 357799999999999999999988887765
Q ss_pred ccccccccc------------------CCCCCCeEEEEEeeCCCC
Q 019643 269 YMSVKHRVK------------------VNKNEERHSVCYFVFPGE 295 (338)
Q Consensus 269 ~kst~HRV~------------------~~~~~~R~Si~~F~~P~~ 295 (338)
-+-...-+. ..+...|+|+.|=.-+..
T Consensus 271 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~~ 315 (345)
T 3tht_A 271 TCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQT 315 (345)
T ss_dssp CCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCSS
T ss_pred CcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCCC
Confidence 443333221 012346999999876544
No 15
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=69.13 E-value=8.1 Score=32.74 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=49.5
Q ss_pred ceEeeecCCCCCccccCccccccCC-----C--eEEEEecCCCCceEEEe---CCeEEEeccCCCeEEEEcchhhHHHhC
Q 019643 197 LVRVYRYPKFSKADEALGMEVHTDS-----S--VLSILNEDQVGGLEVFK---DDKWLLVQPIPGSLIVNLGDMMQAISN 266 (338)
Q Consensus 197 ~lr~~~Yp~~~~~~~~~~~~~HtD~-----g--~lTlL~~d~~~GLqV~~---~g~W~~V~p~p~~~vVniGd~l~~~Tn 266 (338)
.+-+|+|.+. . ++++|.|- + .+|+-+- ...-+.+.. .+..+.+...+|+++|.-|+.-
T Consensus 106 ~~LvN~Y~~G-----~-~i~~H~D~~e~~~~~pI~svSLG-~~~~f~f~~~~~~~~~~~i~L~~GsllvM~G~~r----- 173 (211)
T 3i3q_A 106 ACLINRYAPG-----A-KLSLHQDKDEPDLRAPIVSVSLG-LPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESR----- 173 (211)
T ss_dssp EEEEEEECTT-----C-CEEEECCCCCSCTTSCEEEEEEE-SCEEEEECCSSTTSCCEEEEECTTCEEEECGGGT-----
T ss_pred EEEEEEEcCC-----C-CcccccCCCccccCCCEEEEECC-CCeEEEEecccCCCceEEEECCCCCEEEECchHH-----
Confidence 3557899763 2 79999992 2 2333332 112344432 3678899999999999988852
Q ss_pred CccccccccccCCC-------CCCeEEEEEee
Q 019643 267 DEYMSVKHRVKVNK-------NEERHSVCYFV 291 (338)
Q Consensus 267 G~~kst~HRV~~~~-------~~~R~Si~~F~ 291 (338)
+ -.|.|.... ...|+|+.|-.
T Consensus 174 --~--~~H~I~~~~~~~~p~~~~~RIsLTFR~ 201 (211)
T 3i3q_A 174 --L--FYHGIQPLKAGFHPLTIDCRYNLTFRQ 201 (211)
T ss_dssp --T--CCEEECCCCCCCBTTTBTCEEEEEEEC
T ss_pred --c--eEeccCcccCCcCCCCCCCEEEEEeee
Confidence 1 247773222 23699999964
No 16
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=52.03 E-value=10 Score=35.92 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCCCCCceeeCCCCC----HHHHHHHHhccceEEEecCCCCHHHHHHHHHHHHHHcc
Q 019643 31 YHSDPVPTLDLGSLN----LEKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNLFS 83 (338)
Q Consensus 31 ~~~~~iPvIDl~~l~----~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 83 (338)
.-...||.|||+++. .++..+.+++.||++|.|. ||.+...+..+...+|.+
T Consensus 96 ~G~~~iP~i~f~di~~~~~s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~ 151 (461)
T 2dbn_A 96 QGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLD 151 (461)
T ss_dssp TTCCSSCEEEHHHHHHTCCCHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcceecHHHhcCCCCCHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHH
Confidence 345679999998873 2577788999999988765 888888888777777763
No 17
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=44.48 E-value=23 Score=23.09 Aligned_cols=38 Identities=29% Similarity=0.539 Sum_probs=30.2
Q ss_pred eeeCCCCCHHHHHHHHhccceEEEecCCCCHHHHHHHHHHH
Q 019643 38 TLDLGSLNLEKLGDACKNWGLFRLVSHGIPETLMSQLRSQA 78 (338)
Q Consensus 38 vIDl~~l~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~ 78 (338)
++|++.+...+|.+.|+..| |.-.|.-.++++++.+..
T Consensus 7 ~~~l~klkV~eLK~~L~~rG---L~~~G~KaeLieRL~~~l 44 (55)
T 2do1_A 7 GVELHKLKLAELKQECLARG---LETKGIKQDLIHRLQAYL 44 (55)
T ss_dssp CCCTTTSCHHHHHHHHHHHT---CCCCSCHHHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHHcC---CCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999 445676678888876543
No 18
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=38.85 E-value=48 Score=24.07 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=39.9
Q ss_pred CCCCceeeCCCCCHHHHHHHHhccceEEEecCCCCHHHHHHHHHH-HHHHccCCHHHHhhhh
Q 019643 33 SDPVPTLDLGSLNLEKLGDACKNWGLFRLVSHGIPETLMSQLRSQ-AKNLFSFSFESKQRLF 93 (338)
Q Consensus 33 ~~~iPvIDl~~l~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~-~~~fF~lP~e~K~~~~ 93 (338)
....|-|||+.|....|++=++.++. =+..+++.+ ++..+ .+.|-++|..|+.-+.
T Consensus 16 ~~~~p~vdf~kL~~~tLrrY~r~y~L--~~~~~~sK~---qLa~aV~kHF~s~~VdE~evI~ 72 (94)
T 2ld7_A 16 DIDTPEVDLYQLQVNTLRRYKRHFKL--PTRPGLNKA---QLVEIVGCHFKSIPVNEKDTLT 72 (94)
T ss_dssp SSCCCCCCCSSSCHHHHHHHHHHTTC--CCCSSCCHH---HHHHHHHHHHTTCCCCHHHHHH
T ss_pred cCCCCCcCHHHCCHHHHHHHHHHhCC--CCCCCCCHH---HHHHHHHHHHHcCCCCHHHHHH
Confidence 45788899999999999999999987 245566654 33333 3556688887776553
No 19
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=30.42 E-value=1.6e+02 Score=28.98 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCCccchhccCCCccceEeeecCCCCCccccCccccccCC-C--eEEEEe---c-C------CCCceEE
Q 019643 171 TIFEAMVRNLHLDSTQSHSDLSESTGLVRVYRYPKFSKADEALGMEVHTDS-S--VLSILN---E-D------QVGGLEV 237 (338)
Q Consensus 171 ~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~-g--~lTlL~---~-d------~~~GLqV 237 (338)
.++..|+...|++. +. ....-+-+.+|++.. ....|.|. + .||+++ . | ..|-|++
T Consensus 105 ~Fr~~Ls~iTGi~~--Ls----g~~~D~~~a~Y~~G~------fL~~H~D~~~~RrvS~VLYLN~pd~~W~~e~GGeL~L 172 (633)
T 3kt7_A 105 QYRDFFGYVTKAGK--LS----GSKTDMSINTYTKGC------HLLTHDDVIGSRRISFILYLPDPDRKWKSHYGGGLRL 172 (633)
T ss_dssp HHHHHHHHHHTCCC--CC----SSCCCEEEEEECTTC------EEEEECCCCTTEEEEEEEECSCTTSCCCGGGBCCEEE
T ss_pred HHHHHHHHHhCCcc--cC----CCceeEEEEEeCCCC------eeeecCCCCCCeEEEEEEEcCCCCCCCCccCCceEEE
Confidence 34456666667632 00 001124566776543 36678884 2 355554 2 2 1344888
Q ss_pred Ee-C-------CeEEEeccCCCeEEEEcchhhHHHhCCcccccccccc-CCCCCCeEEEEEeeC-CCC
Q 019643 238 FK-D-------DKWLLVQPIPGSLIVNLGDMMQAISNDEYMSVKHRVK-VNKNEERHSVCYFVF-PGE 295 (338)
Q Consensus 238 ~~-~-------g~W~~V~p~p~~~vVniGd~l~~~TnG~~kst~HRV~-~~~~~~R~Si~~F~~-P~~ 295 (338)
+. + .....|.|.-|++|+..-. -+ .++|.|. +..+..|+||+-.++ |..
T Consensus 173 yd~d~~~~P~~d~~~~I~P~fNrLV~F~vs------p~---~S~H~V~eV~~~~~RlSItGWF~~p~~ 231 (633)
T 3kt7_A 173 FPSILPNVPHSDPSAKLVPQFNQIAFFKVL------PG---FSFHDXEEVKVDKHRLSIQGWYHIPQV 231 (633)
T ss_dssp CCEEETTEECSSCSEEECCCTTEEEEEECC------TT---TCCEEECCBCSSCCEEEEEEEEECCCT
T ss_pred ecCCCcCCCCCCceEEEecCCCeEEEEEcC------CC---CCcCCCCccCCCCCEEEEEEEeccCCC
Confidence 73 2 2477899999999887531 01 3578762 122789999976554 443
No 20
>3pnt_A NAD+-glycohydrolase; glycohydrolase, NAD+, virulence factor, hydrolase-hydrolase complex; 2.80A {Streptococcus pyogenes}
Probab=30.30 E-value=23 Score=29.60 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=29.0
Q ss_pred CCceeeCCCCCHHHHHHHHhccceEEEecCCC
Q 019643 35 PVPTLDLGSLNLEKLGDACKNWGLFRLVSHGI 66 (338)
Q Consensus 35 ~iPvIDl~~l~~~~l~~A~~~~Gff~l~nhgi 66 (338)
-.|.||...+..+++..|....|++-|+|.-|
T Consensus 210 imPSId~kgls~~dvLaaIe~kGYyEI~nPti 241 (268)
T 3pnt_A 210 IFPSISVKDLKSKAVLAEIDAKGYFEIIDPTI 241 (268)
T ss_dssp EECEEECTTCCHHHHHHHHHHHSCCEEESCEE
T ss_pred eecccccCCCcHHHHHHHHhhcCeEEecCCeE
Confidence 48999999999999999999999999998643
No 21
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.19 E-value=12 Score=25.71 Aligned_cols=41 Identities=7% Similarity=-0.039 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhcc
Q 019643 151 FDSFRLSLEEYGKHMSRIARTIFEAMVRNLHLDSTQSHSDL 191 (338)
Q Consensus 151 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~ 191 (338)
+.+.+..+++|+..-.+-...-+..||..+||+.+.+..+|
T Consensus 13 ~k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWF 53 (71)
T 2da7_A 13 YKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWF 53 (71)
T ss_dssp STHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 45667889999988877777888999999999987665555
No 22
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=28.42 E-value=40 Score=29.27 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCCceeeCCC-CCH---HHHHHHHhccceEEEecCCCCHHHHHHHHHHHHHH
Q 019643 34 DPVPTLDLGS-LNL---EKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNL 81 (338)
Q Consensus 34 ~~iPvIDl~~-l~~---~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f 81 (338)
+.|+-||++. ++. ++|.+++.++|++.+.+-.++.+.. .+.++.|
T Consensus 16 aei~gvdl~~~l~~~~~~~l~~~l~~~Gvv~frg~~~~~~~~---~~~~~~~ 64 (283)
T 1otj_A 16 AQISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITPQQQ---RALAQRF 64 (283)
T ss_dssp EEEESCCSSSCCCHHHHHHHHHHHHHHSEEEECSCCCCHHHH---HHHHHTT
T ss_pred EEEECCCcCccCCHHHHHHHHHHHHHCCEEEECCCCCCHHHH---HHHHHHh
Confidence 4577789988 543 4899999999999999988876533 3344444
No 23
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=24.97 E-value=38 Score=21.92 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=18.3
Q ss_pred CCCceeeCCCCCHHHHHHHHh
Q 019643 34 DPVPTLDLGSLNLEKLGDACK 54 (338)
Q Consensus 34 ~~iPvIDl~~l~~~~l~~A~~ 54 (338)
.-||.|+++.-+.+.|++|++
T Consensus 51 qiipsinisksdveairkamk 71 (72)
T 4f87_A 51 QIIPSINISKSDVEAIRKAMK 71 (72)
T ss_dssp TTSCEEECCGGGHHHHHHHHC
T ss_pred HhCccccccHhHHHHHHHHhc
Confidence 459999999999999999875
No 24
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=24.31 E-value=66 Score=20.26 Aligned_cols=24 Identities=4% Similarity=0.169 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccc
Q 019643 164 HMSRIARTIFEAMVRNLHLDSTQS 187 (338)
Q Consensus 164 ~~~~l~~~ll~~la~~Lgl~~~~~ 187 (338)
+-.+++..|.+++++.||.+++.+
T Consensus 18 ~k~~l~~~l~~~l~~~lg~p~~~v 41 (63)
T 2x4k_A 18 QLKNLVSEVTDAVEKTTGANRQAI 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHhCcCcccE
Confidence 345778888899999999997643
No 25
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=22.67 E-value=46 Score=27.75 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCceeeCCCCCH----HHHHHHHhccceEEEecCCC
Q 019643 35 PVPTLDLGSLNL----EKLGDACKNWGLFRLVSHGI 66 (338)
Q Consensus 35 ~iPvIDl~~l~~----~~l~~A~~~~Gff~l~nhgi 66 (338)
.||++++..... +.+.+++.+.-.+.|.|||+
T Consensus 125 ~v~~~~y~~~g~~~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPGSPELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTTCHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 799999976542 36777887878899999996
No 26
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=22.50 E-value=62 Score=28.36 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=34.2
Q ss_pred CCCceeeCCC-CCH---HHHHHHHhccceEEEecCC-CCHHHHHHHHHHHHHHcc
Q 019643 34 DPVPTLDLGS-LNL---EKLGDACKNWGLFRLVSHG-IPETLMSQLRSQAKNLFS 83 (338)
Q Consensus 34 ~~iPvIDl~~-l~~---~~l~~A~~~~Gff~l~nhg-i~~~~~~~~~~~~~~fF~ 83 (338)
+.|+-||++. ++. ++|.+++.++|++.+.+-. ++.+ +..+.++.|-.
T Consensus 26 aei~gvdl~~~l~~~~~~~l~~~l~~~Gvv~fRg~~~l~~~---~~~~~~~~fG~ 77 (301)
T 1oih_A 26 AEIRGVKLSPDLDAATVEAIQAALVRHKVIFFRGQTHLDDQ---SQEGFAKLLGE 77 (301)
T ss_dssp EEEESCCCCTTCCHHHHHHHHHHHHHHSEEEECCCTTCCHH---HHHHHHHTTSC
T ss_pred eEEeCCCccccCCHHHHHHHHHHHHHCCEEEECCCCCCCHH---HHHHHHHHhCC
Confidence 3477789988 543 4899999999999999887 8753 44455565544
No 27
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=21.84 E-value=31 Score=31.82 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=35.1
Q ss_pred CCceeeCCCCC-----HHHHHHHHhccceEEEecCCCCHHHHHHHHHHHHHHccC
Q 019643 35 PVPTLDLGSLN-----LEKLGDACKNWGLFRLVSHGIPETLMSQLRSQAKNLFSF 84 (338)
Q Consensus 35 ~iPvIDl~~l~-----~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~l 84 (338)
++|.||++.+. ..++.+|+.++|++.+.+-.++.+. ..+.++.|-.+
T Consensus 122 ~~~~~~~~~~l~~d~~~~~~~~~l~~~Gvv~frg~~~~~~~---~~~~a~~~G~l 173 (388)
T 3o2g_A 122 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGE---VSKLGKRMGFL 173 (388)
T ss_dssp CCCEEEHHHHHHCHHHHHHHHHHHHHHSEEEEECCCSSTTH---HHHHHHHHSCC
T ss_pred CCCccCHHHHhcCHHHHHHHHHHHHhcCEEEEeCCCCCHHH---HHHHHHHhCCC
Confidence 68999998763 2488999999999999999887553 33455666443
No 28
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.54 E-value=62 Score=20.49 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=29.5
Q ss_pred eeeCCCCCHHHHHHHHhccceEEEecCCCCHHHHHHHHHH
Q 019643 38 TLDLGSLNLEKLGDACKNWGLFRLVSHGIPETLMSQLRSQ 77 (338)
Q Consensus 38 vIDl~~l~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~ 77 (338)
.+|++.+...+|.+.|+..|. .-.|.-.++++++.+.
T Consensus 7 ~~~~~klkV~eLK~eLk~RgL---~~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 7 GMDVRRLKVNELREELQRRGL---DTRGLKAELAERLQAA 43 (50)
T ss_dssp CCCGGGSCHHHHHHHHHHTTC---CCCSCHHHHHHHHHHH
T ss_pred cCCHHHCcHHHHHHHHHHcCC---CCCCcHHHHHHHHHHH
Confidence 478889999999999999993 4567777888887654
No 29
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=20.53 E-value=82 Score=17.07 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=10.1
Q ss_pred eEEEeCCeEEEec
Q 019643 235 LEVFKDDKWLLVQ 247 (338)
Q Consensus 235 LqV~~~g~W~~V~ 247 (338)
..|+++|.|+...
T Consensus 12 ~Yvr~dg~WV~l~ 24 (27)
T 2ww6_A 12 AYVRKFGEWVLLS 24 (27)
T ss_dssp EEEEETTEEEEGG
T ss_pred eeEEEcCeEEEcc
Confidence 5577999999764
No 30
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=20.45 E-value=98 Score=19.64 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCccc
Q 019643 165 MSRIARTIFEAMVRNLHLDSTQS 187 (338)
Q Consensus 165 ~~~l~~~ll~~la~~Lgl~~~~~ 187 (338)
-.+++..|.+++++.||.+++.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v 39 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEV 39 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHHHHHHhCCCcccE
Confidence 35677788899999999997643
No 31
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=20.28 E-value=1.1e+02 Score=27.29 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=29.2
Q ss_pred HHHHHHhccceEEEecCCCC----HHHHHHHHHHHHHHcc
Q 019643 48 KLGDACKNWGLFRLVSHGIP----ETLMSQLRSQAKNLFS 83 (338)
Q Consensus 48 ~l~~A~~~~Gff~l~nhgi~----~~~~~~~~~~~~~fF~ 83 (338)
++.+.++.-||+.=.+|||+ .+-+..+++++++|++
T Consensus 309 ~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey~A 348 (348)
T 4ay7_A 309 EAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEFYA 348 (348)
T ss_dssp HHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHhcC
Confidence 56677777788777789975 5789999999999985
No 32
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=20.17 E-value=77 Score=20.14 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=28.5
Q ss_pred eeCCCCCHHHHHHHHhccceEEEecCCCCHHHHHHHHHH
Q 019643 39 LDLGSLNLEKLGDACKNWGLFRLVSHGIPETLMSQLRSQ 77 (338)
Q Consensus 39 IDl~~l~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~ 77 (338)
.|++.+...+|.+.|+..| |.-.|--.++++++.+.
T Consensus 3 ~~~~kltV~eLK~~Lk~RG---L~~~G~KadLieRL~~~ 38 (51)
T 1h1j_S 3 ADYSSLTVVQLKDLLTKRN---LSVGGLKNELVQRLIKD 38 (51)
T ss_dssp CSGGGCCHHHHHHHHHHTT---CCCCSSHHHHHHHHHHH
T ss_pred chHHHCcHHHHHHHHHHcC---CCCCCcHHHHHHHHHHH
Confidence 4778888899999999999 44467777888888754
Done!