Query 019644
Match_columns 338
No_of_seqs 326 out of 1003
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:55:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 2.2E-29 7.5E-34 202.6 6.7 86 137-222 5-90 (93)
2 1uhr_A SWI/SNF related, matrix 99.9 1.8E-28 6E-33 197.3 5.7 84 139-222 7-90 (93)
3 1v31_A Hypothetical protein RA 99.9 2.3E-27 7.9E-32 190.8 6.8 82 255-338 4-85 (93)
4 1v32_A AT5G08430, hypothetical 99.9 4.3E-26 1.5E-30 185.6 7.4 78 261-338 12-93 (101)
5 1uhr_A SWI/SNF related, matrix 99.9 2.1E-26 7.2E-31 185.2 4.4 78 259-338 8-85 (93)
6 1v32_A AT5G08430, hypothetical 99.9 1E-25 3.6E-30 183.4 7.6 73 145-217 15-93 (101)
7 1q1v_A DEK protein; winged-hel 99.7 3.5E-17 1.2E-21 124.7 6.9 57 1-57 11-68 (70)
8 3dac_M MDM4 protein; MDMX, MDM 97.0 0.00078 2.7E-08 56.1 5.0 75 263-337 25-106 (130)
9 2z5s_M MDM4 protein, zebrafish 97.0 0.0013 4.5E-08 55.1 6.3 69 262-330 23-95 (140)
10 3fea_A MDM4 protein; HDMX, HDM 96.9 0.0009 3.1E-08 53.5 4.6 74 263-336 16-96 (100)
11 3dac_M MDM4 protein; MDMX, MDM 96.9 0.0011 3.6E-08 55.3 4.9 77 144-220 25-110 (130)
12 1ycq_A MDM2, MDM2; anti-oncoge 96.9 0.0026 8.8E-08 51.5 6.9 70 263-332 12-85 (107)
13 1z1m_A Ubiquitin-protein ligas 96.6 0.0073 2.5E-07 49.6 7.9 64 272-335 40-104 (119)
14 1z1m_A Ubiquitin-protein ligas 96.5 0.0041 1.4E-07 51.1 6.0 74 144-217 28-107 (119)
15 3fea_A MDM4 protein; HDMX, HDM 96.4 0.0022 7.6E-08 51.3 3.7 74 144-217 16-98 (100)
16 2axi_A Ubiquitin-protein ligas 96.4 0.0025 8.5E-08 52.1 3.9 72 263-334 12-87 (115)
17 2z5s_M MDM4 protein, zebrafish 96.4 0.0048 1.6E-07 51.7 5.5 76 143-218 23-107 (140)
18 1ycq_A MDM2, MDM2; anti-oncoge 96.3 0.0062 2.1E-07 49.2 5.9 70 144-213 12-87 (107)
19 2axi_A Ubiquitin-protein ligas 95.9 0.0045 1.5E-07 50.5 3.0 71 144-214 12-88 (115)
20 2kwl_A ACP, acyl carrier prote 71.5 3.9 0.00013 30.0 3.9 54 279-335 4-57 (84)
21 2kwl_A ACP, acyl carrier prote 71.2 3.5 0.00012 30.3 3.5 58 155-215 1-58 (84)
22 1f80_D Acyl carrier protein; t 56.8 6.4 0.00022 28.5 2.5 54 279-335 2-55 (81)
23 2lol_A ACP, acyl carrier prote 51.9 15 0.00051 26.4 3.9 53 280-335 2-54 (81)
24 2cg5_B Fatty acid synthase; tr 50.3 10 0.00035 29.3 2.9 40 5-44 9-62 (91)
25 2jq4_A AGR_C_4658P, hypothetic 50.2 16 0.00056 28.4 4.1 44 2-45 18-80 (105)
26 2cnr_A FAS, ACP, acyl carrier 49.2 18 0.0006 25.9 3.9 53 280-335 3-55 (82)
27 3ce7_A Specific mitochodrial a 46.3 25 0.00086 27.5 4.6 41 3-43 16-78 (107)
28 2dnw_A Acyl carrier protein; A 44.6 16 0.00054 27.8 3.1 60 153-215 5-64 (99)
29 1f80_D Acyl carrier protein; t 43.2 14 0.00047 26.6 2.4 55 158-215 2-56 (81)
30 1x3o_A Acyl carrier protein; s 42.5 12 0.0004 26.8 1.9 53 280-335 1-53 (80)
31 2dnw_A Acyl carrier protein; A 42.0 19 0.00064 27.4 3.2 54 279-335 10-63 (99)
32 1dv5_A APO-DCP, APO-D-alanyl c 41.4 14 0.0005 26.9 2.3 52 281-335 1-52 (80)
33 2cnr_A FAS, ACP, acyl carrier 39.6 31 0.0011 24.6 3.9 54 159-215 3-56 (82)
34 2lol_A ACP, acyl carrier prote 36.8 33 0.0011 24.5 3.7 54 159-215 2-55 (81)
35 3e6c_C CPRK, cyclic nucleotide 34.8 36 0.0012 29.3 4.3 52 263-320 176-229 (250)
36 1dd4_C 50S ribosomal protein L 33.4 34 0.0012 22.6 2.9 22 19-40 12-33 (40)
37 1nq4_A Oxytetracycline polyket 32.7 64 0.0022 24.3 4.9 42 3-44 5-63 (95)
38 2l4b_A Acyl carrier protein; i 31.8 6.6 0.00022 29.2 -1.0 56 279-335 3-59 (88)
39 1dv5_A APO-DCP, APO-D-alanyl c 31.0 26 0.0009 25.5 2.3 53 160-215 1-53 (80)
40 2kjs_A Putative acyl carrier p 31.0 67 0.0023 24.0 4.7 54 1-54 1-72 (87)
41 2ahq_A Sigma-54, RNA polymeras 30.6 63 0.0022 24.2 4.3 41 2-43 16-57 (76)
42 1x3o_A Acyl carrier protein; s 30.1 26 0.00089 24.8 2.1 54 159-215 1-54 (80)
43 1klp_A ACP, ACPM, meromycolate 30.1 36 0.0012 26.6 3.1 54 279-335 2-55 (115)
44 2keb_A DNA polymerase subunit 28.9 70 0.0024 25.3 4.5 40 14-56 17-56 (101)
45 2l4b_A Acyl carrier protein; i 28.8 63 0.0022 23.5 4.2 23 21-43 44-66 (88)
46 1vku_A Acyl carrier protein; T 28.7 36 0.0012 26.2 2.9 53 279-335 12-64 (100)
47 2cgq_A Acyl carrier protein AC 28.4 25 0.00086 28.1 1.9 48 279-335 26-73 (113)
48 2ava_A ACP I, acyl carrier pro 28.2 45 0.0015 23.8 3.2 52 281-335 1-52 (82)
49 2do1_A Nuclear protein HCC-1; 27.8 1.2E+02 0.0041 21.2 5.1 40 17-57 7-46 (55)
50 1af8_A Actinorhodin polyketide 26.3 38 0.0013 24.6 2.5 50 285-335 6-56 (86)
51 2jq4_A AGR_C_4658P, hypothetic 26.1 35 0.0012 26.4 2.4 55 279-335 17-71 (105)
52 2ava_A ACP I, acyl carrier pro 24.6 60 0.002 23.1 3.3 53 160-215 1-53 (82)
53 3fx3_A Cyclic nucleotide-bindi 23.1 76 0.0026 26.8 4.2 51 263-320 177-229 (237)
54 2cgq_A Acyl carrier protein AC 22.8 40 0.0014 26.9 2.1 52 155-215 23-74 (113)
55 3ce7_A Specific mitochodrial a 22.7 62 0.0021 25.2 3.2 52 280-335 15-71 (107)
56 1vku_A Acyl carrier protein; T 22.5 62 0.0021 24.9 3.1 55 157-215 11-65 (100)
57 1klp_A ACP, ACPM, meromycolate 22.4 62 0.0021 25.2 3.2 55 158-215 2-56 (115)
58 2ehs_A ACP, acyl carrier prote 22.3 1.1E+02 0.0038 21.1 4.3 23 21-43 34-56 (77)
59 1l0i_A Acyl carrier protein; a 22.2 1.1E+02 0.0038 21.3 4.3 23 21-43 36-58 (78)
60 3gzm_A Acyl carrier protein; h 22.1 54 0.0018 23.5 2.6 52 281-335 2-53 (81)
61 3e6c_C CPRK, cyclic nucleotide 21.7 42 0.0014 28.9 2.3 52 143-198 175-228 (250)
62 1jjr_A KU70, thyroid autoantig 20.3 1.3E+02 0.0045 25.4 4.9 42 10-55 51-92 (151)
63 2zcw_A TTHA1359, transcription 20.1 84 0.0029 25.9 3.8 51 263-319 145-197 (202)
64 2ld7_A Histone deacetylase com 20.1 76 0.0026 24.8 3.1 34 165-216 29-62 (94)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.95 E-value=2.2e-29 Score=202.57 Aligned_cols=86 Identities=23% Similarity=0.560 Sum_probs=83.1
Q ss_pred CCCCcccccCCHHHHhhhCCCcccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCCC
Q 019644 137 GGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWP 216 (338)
Q Consensus 137 ~~g~~~~~~lSp~La~~lG~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~p 216 (338)
.++++.+|.|||+||+|||..++||++||++||+|||+||||||.|||.|+||++|+.|||+++|.||+|+++|++||.|
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p 84 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 84 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBC
T ss_pred CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 019644 217 LDSDDV 222 (338)
Q Consensus 217 ~~p~~~ 222 (338)
++|+..
T Consensus 85 ~~Pi~~ 90 (93)
T 1v31_A 85 PPPSGP 90 (93)
T ss_dssp CCCSSC
T ss_pred CCCeeC
Confidence 999975
No 2
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.95 E-value=1.8e-28 Score=197.28 Aligned_cols=84 Identities=25% Similarity=0.597 Sum_probs=80.9
Q ss_pred CCcccccCCHHHHhhhCCCcccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCCCCC
Q 019644 139 GFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLD 218 (338)
Q Consensus 139 g~~~~~~lSp~La~~lG~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~p~~ 218 (338)
-...+|.|||+||+|||..++||++||++||+|||+||||||.|||.|+||++|+.|||+++|.||+|+++|++||.|++
T Consensus 7 ~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1uhr_A 7 GQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE 86 (93)
T ss_dssp SSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred cCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc
Q 019644 219 SDDV 222 (338)
Q Consensus 219 p~~~ 222 (338)
|+..
T Consensus 87 PI~i 90 (93)
T 1uhr_A 87 PSGP 90 (93)
T ss_dssp CCCS
T ss_pred CeeC
Confidence 9986
No 3
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.94 E-value=2.3e-27 Score=190.75 Aligned_cols=82 Identities=29% Similarity=0.557 Sum_probs=77.8
Q ss_pred CCCCCCCCccccHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhcc
Q 019644 255 GKSGFLAPLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVH 334 (338)
Q Consensus 255 ~~~g~~~~~~lS~~La~flG~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H 334 (338)
+..+++.+|.+|++||+|||.. ++||++|+++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++|
T Consensus 4 ~~~~~p~~~~lS~~La~~lG~~--~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~H 81 (93)
T 1v31_A 4 GSSGVPEKFKLSTALMDVLGIE--VETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHH 81 (93)
T ss_dssp SCCSSCCCEECCHHHHHHSCCS--EECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHH
T ss_pred CCCCCCCccccCHHHHHHHCCC--ccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHh
Confidence 4456789999999999999977 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 019644 335 FLKT 338 (338)
Q Consensus 335 ~~k~ 338 (338)
|.+|
T Consensus 82 l~p~ 85 (93)
T 1v31_A 82 LSPP 85 (93)
T ss_dssp CBCC
T ss_pred cCCC
Confidence 9874
No 4
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=4.3e-26 Score=185.65 Aligned_cols=78 Identities=33% Similarity=0.521 Sum_probs=72.9
Q ss_pred CCccccHHHHHHh---CCCC-CCCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhcccC
Q 019644 261 APLQLSDALIKFL---GTGE-SALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHFL 336 (338)
Q Consensus 261 ~~~~lS~~La~fl---G~~~-~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~~ 336 (338)
-.-++|++|++|| |.++ +++||++|+++||+|||+||||||.|||.|+||++|+.|||+++|.||+|+++|++||.
T Consensus 12 ~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~ 91 (101)
T 1v32_A 12 FVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYK 91 (101)
T ss_dssp SSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSC
T ss_pred ecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcC
Confidence 3458999999999 8753 57999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 019644 337 KT 338 (338)
Q Consensus 337 k~ 338 (338)
++
T Consensus 92 ~~ 93 (101)
T 1v32_A 92 EN 93 (101)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 5
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.92 E-value=2.1e-26 Score=185.15 Aligned_cols=78 Identities=24% Similarity=0.536 Sum_probs=74.5
Q ss_pred CCCCccccHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhcccCCC
Q 019644 259 FLAPLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHFLKT 338 (338)
Q Consensus 259 ~~~~~~lS~~La~flG~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~~k~ 338 (338)
.+.+|.||++||+|+|.. ++||++|+++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.+|
T Consensus 8 ~p~~~~lS~~La~~lG~~--~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~ 85 (93)
T 1uhr_A 8 QPPQFKLDPRLARLLGIH--TQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPP 85 (93)
T ss_dssp SCCEEEECTTHHHHTCCS--EEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECS
T ss_pred CCCccCcCHHHHHHHCCC--ccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCC
Confidence 456799999999999977 999999999999999999999999999999999999999999999999999999999874
No 6
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=1e-25 Score=183.39 Aligned_cols=73 Identities=37% Similarity=0.557 Sum_probs=70.0
Q ss_pred cCCHHHHhhh---CC---CcccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCCCC
Q 019644 145 ALSPQLQEFI---GV---TELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPL 217 (338)
Q Consensus 145 ~lSp~La~~l---G~---~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~p~ 217 (338)
.+||+||+|| |. .++||++||++||+|||+||||||.|||.|+||++|+.|||+++|.||+|+++|++||.+.
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 7899999999 87 5799999999999999999999999999999999999999999999999999999999753
No 7
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=99.69 E-value=3.5e-17 Score=124.74 Aligned_cols=57 Identities=23% Similarity=0.414 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCccHHHHHHHHHHHh-CCCCchhhHHHHHHHHHHHhh
Q 019644 1 MVSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDF-GVDLTDKKIFIREQVDLFLQS 57 (338)
Q Consensus 1 ~~sd~ei~~~i~~IL~~aDl~~vT~k~VR~~Le~~~-gvdLs~kK~~I~~~I~~~l~~ 57 (338)
+|||++|...|++||++|||++||.|+||++||++| |+||++||+||+++|+.+|+.
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~~ 68 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKELISL 68 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999999999 999999999999999999963
No 8
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.98 E-value=0.00078 Score=56.08 Aligned_cols=75 Identities=23% Similarity=0.417 Sum_probs=63.2
Q ss_pred ccccHHHHHHh---CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hHHHhhhcCCccchhc---HHHHHhccc
Q 019644 263 LQLSDALIKFL---GTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICD-EKLKELFDVDTFNGFT---VTKLLVVHF 335 (338)
Q Consensus 263 ~~lS~~La~fl---G~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD-~kLk~lf~~d~i~~~~---l~klL~~H~ 335 (338)
++--+.|-.+| |......|..+|+.-+=+||-.+.|.||.+..+|.|- +.|.++||+++|++-+ |-++|.+++
T Consensus 25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL 104 (130)
T 3dac_M 25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL 104 (130)
T ss_dssp EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence 34445555554 6655678999999999999999999999999999996 7899999999999988 888888887
Q ss_pred CC
Q 019644 336 LK 337 (338)
Q Consensus 336 ~k 337 (338)
+.
T Consensus 105 v~ 106 (130)
T 3dac_M 105 VI 106 (130)
T ss_dssp EE
T ss_pred ec
Confidence 53
No 9
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=96.97 E-value=0.0013 Score=55.07 Aligned_cols=69 Identities=23% Similarity=0.421 Sum_probs=59.2
Q ss_pred CccccHHHHHHh---CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hHHHhhhcCCccchhcHHHH
Q 019644 262 PLQLSDALIKFL---GTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICD-EKLKELFDVDTFNGFTVTKL 330 (338)
Q Consensus 262 ~~~lS~~La~fl---G~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD-~kLk~lf~~d~i~~~~l~kl 330 (338)
.++--+.|-.|| |......|+-+|+--+-+||-.+.|.|+.+..+|.|. +.|.+|||+.+|++-+...+
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~l 95 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPV 95 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHH
Confidence 566667777776 6555678999999999999999999999999999997 78899999999998876643
No 10
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.90 E-value=0.0009 Score=53.54 Aligned_cols=74 Identities=22% Similarity=0.382 Sum_probs=62.3
Q ss_pred ccccHHHHHHh---CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hHHHhhhcCCccchh---cHHHHHhccc
Q 019644 263 LQLSDALIKFL---GTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICD-EKLKELFDVDTFNGF---TVTKLLVVHF 335 (338)
Q Consensus 263 ~~lS~~La~fl---G~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD-~kLk~lf~~d~i~~~---~l~klL~~H~ 335 (338)
++--+.|-.+| |......|..+|+.-+=+||-.+.|.||.+..+|.|. +.|.++||+++|++- .+-++|..|+
T Consensus 16 Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nL 95 (100)
T 3fea_A 16 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNL 95 (100)
T ss_dssp BEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhc
Confidence 34444555554 6655679999999999999999999999999999997 789999999999987 7888888887
Q ss_pred C
Q 019644 336 L 336 (338)
Q Consensus 336 ~ 336 (338)
+
T Consensus 96 v 96 (100)
T 3fea_A 96 V 96 (100)
T ss_dssp E
T ss_pred e
Confidence 5
No 11
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.86 E-value=0.0011 Score=55.27 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=64.9
Q ss_pred ccCCHHHHhhh---C--CCcccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhHhhhhCCCccChhh---HHHHHhccC
Q 019644 144 CALSPQLQEFI---G--VTELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQ---MNKALSKHI 214 (338)
Q Consensus 144 ~~lSp~La~~l---G--~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cD-e~Lk~lf~~~~~~~~~---m~k~L~~Hl 214 (338)
++--|.|-.|| | .+..|..+|+.-|-+||-.+.|+||.+..+|.|. +.|..+||+++|++.+ +-..|.++|
T Consensus 25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL 104 (130)
T 3dac_M 25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL 104 (130)
T ss_dssp EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence 34456677776 5 4679999999999999999999999999999996 7888999999999998 999999999
Q ss_pred CCCCCC
Q 019644 215 WPLDSD 220 (338)
Q Consensus 215 ~p~~p~ 220 (338)
.++...
T Consensus 105 v~~~~~ 110 (130)
T 3dac_M 105 VILNNS 110 (130)
T ss_dssp EEC---
T ss_pred ecccCc
Confidence 877643
No 12
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.85 E-value=0.0026 Score=51.46 Aligned_cols=70 Identities=27% Similarity=0.458 Sum_probs=57.0
Q ss_pred ccccHHHHHHh---CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hHHHhhhcCCccchhcHHHHHh
Q 019644 263 LQLSDALIKFL---GTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICD-EKLKELFDVDTFNGFTVTKLLV 332 (338)
Q Consensus 263 ~~lS~~La~fl---G~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD-~kLk~lf~~d~i~~~~l~klL~ 332 (338)
++-.+.|-.+| |......|+.+|+-.+-+||-.+.|.|+.+..+|.|. +.|.+|||+++|++-+...+..
T Consensus 12 VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ 85 (107)
T 1ycq_A 12 VQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYA 85 (107)
T ss_dssp BEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHH
T ss_pred cCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHH
Confidence 34445555555 5444578999999999999999999999999999997 7889999999999987774443
No 13
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.59 E-value=0.0073 Score=49.61 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=54.1
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hHHHhhhcCCccchhcHHHHHhccc
Q 019644 272 FLGTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICD-EKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 272 flG~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD-~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
..|......|..+|+-.+-+||-.+.|.|+.+..+|.|. +.|.+|||+++|++-+...+...|+
T Consensus 40 ~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~ 104 (119)
T 1z1m_A 40 SVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY 104 (119)
T ss_dssp HHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHS
T ss_pred HhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHH
Confidence 346544578999999999999999999999999999997 7889999999999887666655443
No 14
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.52 E-value=0.0041 Score=51.12 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=59.6
Q ss_pred ccCCHHHHhhh---C--CCcccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhHhhhhCCCccChhhHHHHHhccCCCC
Q 019644 144 CALSPQLQEFI---G--VTELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMNKALSKHIWPL 217 (338)
Q Consensus 144 ~~lSp~La~~l---G--~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cD-e~Lk~lf~~~~~~~~~m~k~L~~Hl~p~ 217 (338)
.+-.+.|-.|| | ....|+.+|+.-|-+||-.+.|+|+.+..+|.|. +.|..|||+.+|++-+-..+...|...+
T Consensus 28 VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 107 (119)
T 1z1m_A 28 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL 107 (119)
T ss_dssp CCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSC
T ss_pred ccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 33445555555 5 3568899999999999999999999999999997 7779999999999988777766665443
No 15
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.41 E-value=0.0022 Score=51.28 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=61.6
Q ss_pred ccCCHHHHhhh---C--CCcccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhHhhhhCCCccChh---hHHHHHhccC
Q 019644 144 CALSPQLQEFI---G--VTELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMF---QMNKALSKHI 214 (338)
Q Consensus 144 ~~lSp~La~~l---G--~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cD-e~Lk~lf~~~~~~~~---~m~k~L~~Hl 214 (338)
++--|.|-.+| | .+..|..+|+.-+=+||-.+.|.||.+...|.|. +.|..+||+++|.+. .+-..|.+||
T Consensus 16 Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nL 95 (100)
T 3fea_A 16 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNL 95 (100)
T ss_dssp BEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhc
Confidence 34456677776 5 4679999999999999999999999999999997 778899999998887 7778888887
Q ss_pred CCC
Q 019644 215 WPL 217 (338)
Q Consensus 215 ~p~ 217 (338)
..+
T Consensus 96 v~~ 98 (100)
T 3fea_A 96 VTL 98 (100)
T ss_dssp EC-
T ss_pred eec
Confidence 543
No 16
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=96.38 E-value=0.0025 Score=52.05 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=57.6
Q ss_pred ccccHHHHHHh---CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hHHHhhhcCCccchhcHHHHHhcc
Q 019644 263 LQLSDALIKFL---GTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICD-EKLKELFDVDTFNGFTVTKLLVVH 334 (338)
Q Consensus 263 ~~lS~~La~fl---G~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD-~kLk~lf~~d~i~~~~l~klL~~H 334 (338)
++-.+.|-.+| |......|..+|+--+-+||-.+.|.|+.+..+|.|. +.|.+|||+++|++-+...+...+
T Consensus 12 VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml 87 (115)
T 2axi_A 12 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI 87 (115)
T ss_dssp EEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHH
T ss_pred cCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHH
Confidence 34445555555 5444468999999999999999999999999999997 788999999999988766655433
No 17
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=96.35 E-value=0.0048 Score=51.67 Aligned_cols=76 Identities=21% Similarity=0.318 Sum_probs=62.8
Q ss_pred cccCCHHHHhhh---C--CCcccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhHhhhhCCCccChhhHH---HHHhcc
Q 019644 143 LCALSPQLQEFI---G--VTELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMN---KALSKH 213 (338)
Q Consensus 143 ~~~lSp~La~~l---G--~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cD-e~Lk~lf~~~~~~~~~m~---k~L~~H 213 (338)
.++--|.|-.|| | ....|+.+|+--|-+||-...|+|+.+..+|.|. +.|..|||+.+|++-+.. +.|.+.
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 456677888887 5 4679999999999999999999999999999997 777999999999888655 556666
Q ss_pred CCCCC
Q 019644 214 IWPLD 218 (338)
Q Consensus 214 l~p~~ 218 (338)
+.+..
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 65544
No 18
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.33 E-value=0.0062 Score=49.21 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=57.3
Q ss_pred ccCCHHHHhhh---C--CCcccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhHhhhhCCCccChhhHHHHHhcc
Q 019644 144 CALSPQLQEFI---G--VTELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMNKALSKH 213 (338)
Q Consensus 144 ~~lSp~La~~l---G--~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cD-e~Lk~lf~~~~~~~~~m~k~L~~H 213 (338)
.+-.+.|..+| | ....|+.+|+--|-+||-...|+|+.+..+|.|. +.|..+||+.+|++-+-..+...|
T Consensus 12 VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml 87 (107)
T 1ycq_A 12 VQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMI 87 (107)
T ss_dssp BEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHH
T ss_pred cCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHH
Confidence 34456666666 4 3678999999999999999999999999999997 777999999999998777444433
No 19
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=95.86 E-value=0.0045 Score=50.52 Aligned_cols=71 Identities=25% Similarity=0.371 Sum_probs=58.2
Q ss_pred ccCCHHHHhhh---C--CCcccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhHhhhhCCCccChhhHHHHHhccC
Q 019644 144 CALSPQLQEFI---G--VTELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMNKALSKHI 214 (338)
Q Consensus 144 ~~lSp~La~~l---G--~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cD-e~Lk~lf~~~~~~~~~m~k~L~~Hl 214 (338)
.+-.+.|..|| | ....|+.+|+--+-+||-...|+|+.+..+|.|. +.|..|||+.+|++-+-..+...+.
T Consensus 12 VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~ 88 (115)
T 2axi_A 12 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY 88 (115)
T ss_dssp EEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHH
T ss_pred cCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHH
Confidence 34456666666 4 3678999999999999999999999999999997 7779999999999887666655444
No 20
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=71.46 E-value=3.9 Score=30.04 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 279 ALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 279 ~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
.|++.++...|.++|.+.--.+ ...|..|..|..-+|.||+.+.+|...|..+|
T Consensus 4 ~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~f 57 (84)
T 2kwl_A 4 SMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDLNADSLDIYELLYLLEEAF 57 (84)
T ss_dssp CSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhcCCCHHHHHHHHHHHHHHH
Confidence 7999999999999998753233 34688999997779999999998888887765
No 21
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=71.20 E-value=3.5 Score=30.33 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=47.9
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 155 GVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 155 G~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
|...|+|.+|...|.++|.+.--.++ ..|..|..|..-+|.|++.+.++...|..+|.
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 56689999999999999987632333 47889999977899999999999999998874
No 22
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=56.84 E-value=6.4 Score=28.47 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 279 ALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 279 ~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
.|++.++...|.++|.+.--.++ ..|..|..|..-+|.||+.+.+|...|..+|
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~f 55 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEF 55 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHh
Confidence 58889999999999887642332 4688899997779999999999988888776
No 23
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=51.86 E-value=15 Score=26.40 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 280 LPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 280 ~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
|++.++...|.++|.+.-=.++ ..|-.|..|..-+|.||+.+.++...|..+|
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~f 54 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEY 54 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHH
Confidence 6888999988888887532232 3578888887778899999888888887765
No 24
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=50.31 E-value=10 Score=29.31 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCC--------------CCCccHHHHHHHHHHHhCCCCchhh
Q 019644 5 SELIARLQEFLKNSD--------------LNTTTTGIVRRQLEKDFGVDLTDKK 44 (338)
Q Consensus 5 ~ei~~~i~~IL~~aD--------------l~~vT~k~VR~~Le~~~gvdLs~kK 44 (338)
+.|...|-.+|.-.+ ++.+..-.+|..||+.||+.|+..-
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~ 62 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVRE 62 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHH
Confidence 567888889987654 3455566899999999999998643
No 25
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=50.18 E-value=16 Score=28.42 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHhhC-----C--------------CCCccHHHHHHHHHHHhCCCCchhhH
Q 019644 2 VSDSELIARLQEFLKNS-----D--------------LNTTTTGIVRRQLEKDFGVDLTDKKI 45 (338)
Q Consensus 2 ~sd~ei~~~i~~IL~~a-----D--------------l~~vT~k~VR~~Le~~~gvdLs~kK~ 45 (338)
++.+++...|.+||... + ++.+..-.+...||+.|||.+....-
T Consensus 18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l 80 (105)
T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80 (105)
T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHh
Confidence 45566777777777763 1 23445567999999999999987543
No 26
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=49.23 E-value=18 Score=25.94 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 280 LPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 280 ~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
|+|.++...|.++|.+.-=.++ ..|-.|..|..-+|.||+.+.++...|..+|
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~f 55 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERF 55 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHh
Confidence 8899999999998887542222 3577888886567889998888888888776
No 27
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=46.27 E-value=25 Score=27.51 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhhC----------------------CCCCccHHHHHHHHHHHhCCCCchh
Q 019644 3 SDSELIARLQEFLKNS----------------------DLNTTTTGIVRRQLEKDFGVDLTDK 43 (338)
Q Consensus 3 sd~ei~~~i~~IL~~a----------------------Dl~~vT~k~VR~~Le~~~gvdLs~k 43 (338)
+.++|...|.+||+.. .++++..-.+.-.||+.|||.+..-
T Consensus 16 ~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~ 78 (107)
T 3ce7_A 16 DINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDE 78 (107)
T ss_dssp CHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHH
Confidence 6788999999998754 1344555678999999999999764
No 28
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.62 E-value=16 Score=27.81 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=46.9
Q ss_pred hhCCCcccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 153 FIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 153 ~lG~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
|.++..+++.+|...|.++|.+.--.++ ..|..|..|..-+|.|++.+.+|...|..+|.
T Consensus 5 ~~~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~fg 64 (99)
T 2dnw_A 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64 (99)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 3456779999999999999987632333 36778888754579999999999999998874
No 29
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=43.20 E-value=14 Score=26.64 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=42.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 158 ELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 158 ~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
.|+|.++...|.++|.+.--.++ ..|..|..|..-+|.|++.+.++...|..+|.
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhC
Confidence 46778888888888877643333 46889999977899999999999999999884
No 30
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=42.49 E-value=12 Score=26.77 Aligned_cols=53 Identities=11% Similarity=0.246 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 280 LPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 280 ~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
|+|.++...|.++|...-=.+ ...|..|..|..-+|.||+.+.+|...|..+|
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~f 53 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVE---PEKVTLEARFIEDLGADSLDTVELIMGLEDEF 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---GGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCC---HHHCCCcCcHHhhcCccHHHHHHHHHHHHHHH
Confidence 678888888888877642122 23577788886678889998888888877665
No 31
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.03 E-value=19 Score=27.40 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 279 ALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 279 ~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
.|++.++...|.++|.+.--.++ ..|..|..|..-+|.|++.+.+|...|..+|
T Consensus 10 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~f 63 (99)
T 2dnw_A 10 PLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEF 63 (99)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHH
Confidence 79999999999999987632232 3577777775447888888888887777665
No 32
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=41.38 E-value=14 Score=26.93 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 281 PRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 281 sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
++.++...|.+||.+.--.++ ..|..|..|..+.+.||+.+.+|...|..+|
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~f 52 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQF 52 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHh
Confidence 456788888888887652232 3478888888776699999999999888876
No 33
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=39.58 E-value=31 Score=24.59 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 159 ~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
|+|.++...|.++|.+.-=.++ ..|-.|..|..-+|.+++.+.++...|..+|.
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHhC
Confidence 7888998888888877542232 36778888866689999999999999999884
No 34
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=36.79 E-value=33 Score=24.48 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 159 ~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
++|.++...|.++|.+.-=.++ ..|-.|..|..-+|.+++.+.++...|..+|.
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHC
Confidence 6788888888888877532233 36788888877789999999999999998874
No 35
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=34.76 E-value=36 Score=29.33 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=36.6
Q ss_pred ccccH-HHHHHhCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hHHHhhhcCC
Q 019644 263 LQLSD-ALIKFLGTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICD-EKLKELFDVD 320 (338)
Q Consensus 263 ~~lS~-~La~flG~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD-~kLk~lf~~d 320 (338)
+.++. +||.++|+ ||..|. ++..-.+..++-.-..+++++.| +.|+.+.+.+
T Consensus 176 ~~~t~~~iA~~lG~-----sr~tvs-R~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~~~ 229 (250)
T 3e6c_C 176 MPLSQKSIGEITGV-----HHVTVS-RVLASLKRENILDKKKNKIIVYNLGELKHLSEQT 229 (250)
T ss_dssp CCCCHHHHHHHHTC-----CHHHHH-HHHHHHHHTTSEEECSSEEEESCHHHHHHHHTSS
T ss_pred CCCCHHHHHHHhCC-----cHHHHH-HHHHHHHHCCCeEeCCCEEEEecHHHHHHHHccC
Confidence 34443 79999994 454444 44555667788777778888888 7888888753
No 36
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=33.39 E-value=34 Score=22.58 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=16.4
Q ss_pred CCCCccHHHHHHHHHHHhCCCC
Q 019644 19 DLNTTTTGIVRRQLEKDFGVDL 40 (338)
Q Consensus 19 Dl~~vT~k~VR~~Le~~~gvdL 40 (338)
.|.-+-...+.++||++|||+-
T Consensus 12 ~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCS
T ss_pred hCcHHHHHHHHHHHHHHHCCCc
Confidence 3444445689999999999974
No 37
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=32.66 E-value=64 Score=24.26 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhhCC-----------------CCCccHHHHHHHHHHHhCCCCchhh
Q 019644 3 SDSELIARLQEFLKNSD-----------------LNTTTTGIVRRQLEKDFGVDLTDKK 44 (338)
Q Consensus 3 sd~ei~~~i~~IL~~aD-----------------l~~vT~k~VR~~Le~~~gvdLs~kK 44 (338)
+-++|...|.++|.... ++++..-.+...||+.|||.+....
T Consensus 5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~ 63 (95)
T 1nq4_A 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDA 63 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTH
T ss_pred cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHH
Confidence 56888888999887431 3455566899999999999998743
No 38
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=31.85 E-value=6.6 Score=29.15 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhhcC-CCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 279 ALPRSDVIKRMWDYIKEKN-LQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 279 ~~sr~~v~k~lW~YIk~n~-Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
.|+|.+|...|.++|.+.- +.+ -+...|..|..|..-+|.||+.+.+|.-.|..+|
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~f 59 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERF 59 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHH
Confidence 5899999999999998753 211 0123577788887778999999988888887766
No 39
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=31.03 E-value=26 Score=25.47 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 160 ARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 160 sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
+|.++...|.+||.+.--.++ ..|..|..|..+.+.|++.+.+|.-.|..+|.
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~fg 53 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQFG 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHhC
Confidence 356788888889887653332 34788888877655999999999999999884
No 40
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=31.00 E-value=67 Score=24.04 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhhC--------------CCCCccHHHHHHHHHHHhCCCCchhh----HHHHHHHHHH
Q 019644 1 MVSDSELIARLQEFLKNS--------------DLNTTTTGIVRRQLEKDFGVDLTDKK----IFIREQVDLF 54 (338)
Q Consensus 1 ~~sd~ei~~~i~~IL~~a--------------Dl~~vT~k~VR~~Le~~~gvdLs~kK----~~I~~~I~~~ 54 (338)
|-|-++|..-+.++|..- .++++..-.+..+||+.||+.++..- .-|+++++.+
T Consensus 1 M~tle~l~~I~~e~l~~d~~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l~~~~TV~dl~~~I 72 (87)
T 2kjs_A 1 MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLV 72 (87)
T ss_dssp CCSHHHHHHHHHHHHTCSSCCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCCccccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecHHHHHcCCCHHHHHHHH
Confidence 667788888888888632 13444455789999999999998753 3345555443
No 41
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=30.60 E-value=63 Score=24.16 Aligned_cols=41 Identities=17% Similarity=0.381 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCC-ccHHHHHHHHHHHhCCCCchh
Q 019644 2 VSDSELIARLQEFLKNSDLNT-TTTGIVRRQLEKDFGVDLTDK 43 (338)
Q Consensus 2 ~sd~ei~~~i~~IL~~aDl~~-vT~k~VR~~Le~~~gvdLs~k 43 (338)
.|.+.|...|.+|+...|... +|-.+|...|.+. |++++-|
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRR 57 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARR 57 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHH
Confidence 578899999999999999754 6888999999887 9999865
No 42
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=30.06 E-value=26 Score=24.80 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=40.9
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 159 ~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
|+|.++...|.++|.+.--.++ ..|..|..|..-+|.+++.+.++...|..+|.
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP---EKVTLEARFIEDLGADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG---GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHC
Confidence 5788888888887776532222 35778888867789999999999999998774
No 43
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=30.06 E-value=36 Score=26.61 Aligned_cols=54 Identities=13% Similarity=0.271 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 279 ALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 279 ~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
.|++.++...|.++|.+.-=.++ ..|-.|..|..-+|.||+.+.+|...|..+|
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~f 55 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKY 55 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHH
Confidence 38899999999998887532232 3577888887678899999888888887776
No 44
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.93 E-value=70 Score=25.33 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=28.2
Q ss_pred HHhhCCCCCccHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHh
Q 019644 14 FLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQ 56 (338)
Q Consensus 14 IL~~aDl~~vT~k~VR~~Le~~~gvdLs~kK~~I~~~I~~~l~ 56 (338)
+...-..+.||...|+++++. |||+.++ +.|..+++.++.
T Consensus 17 ~~~~~~~~~Vsae~L~eEfde-fGi~~~d--~VldKc~ELC~~ 56 (101)
T 2keb_A 17 LFQGPGSMSASAQQLAEELQI-FGLDCEE--ALIEKLVELCVQ 56 (101)
T ss_dssp -------CCCCHHHHHHHHHH-HTCBCCH--HHHHHHHHHHHH
T ss_pred eeeCCchhhccHHHHHHHHHH-cCCCCCH--HHHHHHHHHHHH
Confidence 445566789999999999975 9999999 677777777775
No 45
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=28.80 E-value=63 Score=23.52 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.5
Q ss_pred CCccHHHHHHHHHHHhCCCCchh
Q 019644 21 NTTTTGIVRRQLEKDFGVDLTDK 43 (338)
Q Consensus 21 ~~vT~k~VR~~Le~~~gvdLs~k 43 (338)
+++..-.++..||+.||+++...
T Consensus 44 DSl~~vel~~~lE~~fgi~i~~~ 66 (88)
T 2l4b_A 44 DSLDFVDLIMSLEERFSLEISDE 66 (88)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHH
T ss_pred cHHHHHHHHHHHHHHHCCCcCHH
Confidence 45555689999999999999864
No 46
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=28.74 E-value=36 Score=26.25 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 279 ALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 279 ~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
.|-|.++...|+++|.+.--.++ ..|..|..| .-+|.||+.+.+|.-.|...|
T Consensus 12 ~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLGlDSL~~veL~~~LE~~f 64 (100)
T 1vku_A 12 HMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELGFDSIDVIDLVMFFEDEF 64 (100)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTTCCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcCCchHHHHHHHHHHHHHH
Confidence 68899999999999988643333 368889999 667999999998888887655
No 47
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=28.43 E-value=25 Score=28.05 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 279 ALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 279 ~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
.| +.+|...|.++|.+.-- |..|..|..-+|.||+.+.+|.-.|...|
T Consensus 26 ~M-~~ei~~~v~~il~e~l~--------I~~d~~l~~dLGlDSLd~veLi~~LEe~F 73 (113)
T 2cgq_A 26 AM-EEAINATIQRILRTDRG--------ITANQVLVDDLGFDSLKLFQLITELEDEF 73 (113)
T ss_dssp CH-HHHHHHHHHHHHTCCSC--------CCTTCBTTTTTCCCHHHHHHHHHHHHHHH
T ss_pred cc-HHHHHHHHHHHHHHHhC--------CCCCCchhhhcCCCHHHHHHHHHHHHHHh
Confidence 57 99999999999987541 78888887889999999888888777655
No 48
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=28.18 E-value=45 Score=23.82 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 281 PRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 281 sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
+|.++...|.++|.+.--.++. ..|-.|..|. =+|.||+.+.+|...|..+|
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~f 52 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEF 52 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHH
Confidence 4667777777777765322322 2577888887 46889999999888888776
No 49
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=27.80 E-value=1.2e+02 Score=21.24 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=30.3
Q ss_pred hCCCCCccHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHhh
Q 019644 17 NSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQS 57 (338)
Q Consensus 17 ~aDl~~vT~k~VR~~Le~~~gvdLs~kK~~I~~~I~~~l~~ 57 (338)
..|+..+|+..++..|.. +|++.+.+|+.+-+-|..++..
T Consensus 7 ~~~l~klkV~eLK~~L~~-rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 7 GVELHKLKLAELKQECLA-RGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CCCTTTSCHHHHHHHHHH-HTCCCCSCHHHHHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhc
Confidence 467899999999887765 7899888888665556565543
No 50
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=26.26 E-value=38 Score=24.56 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCC-CCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 285 VIKRMWDYIKEKNLQDPS-DKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 285 v~k~lW~YIk~n~Lqdp~-~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
+...|.++|.+.--.++. .-..|-.|..| .=+|.||+.+.+|...|..+|
T Consensus 6 ~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG~DSL~~vel~~~le~~f 56 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRY 56 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTTTCCTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCCcccccccCCCCCCh-hhcCCCHHHHHHHHHHHHHHH
Confidence 344455555543222332 11246778888 557999999999998888776
No 51
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=26.15 E-value=35 Score=26.45 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 279 ALPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 279 ~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
.+++.++...|.++|.+.--.+ -+...|-.|..|.. +|.|++.+.+|.-.|...|
T Consensus 17 ~~~~~~i~~~i~~il~~~l~~~-v~~~~i~~d~~l~d-lGlDSL~~veLv~~lE~~f 71 (105)
T 2jq4_A 17 LYFQGHMNATIREILAKFGQLP-TPVDTIADEADLYA-AGLSSFASVQLMLGIEEAF 71 (105)
T ss_dssp ------CHHHHHHHHHHTSCCS-SCGGGCCTTSCGGG-GTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccC-CCcccCCCCCCHhh-cCCCHHHHHHHHHHHHHHH
Confidence 5778888899999998863222 22456888999985 8999999988888877665
No 52
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=24.59 E-value=60 Score=23.14 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 160 ARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 160 sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
||.++...|.++|.+.=-.++. ..|-.|..|. =+|.|++.+.+|...|..+|.
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~fg 53 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEFG 53 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHHC
Confidence 4567777777777665322222 3577888887 479999999999999999874
No 53
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=23.07 E-value=76 Score=26.78 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=34.4
Q ss_pred cccc-HHHHHHhCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hHHHhhhcCC
Q 019644 263 LQLS-DALIKFLGTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICD-EKLKELFDVD 320 (338)
Q Consensus 263 ~~lS-~~La~flG~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD-~kLk~lf~~d 320 (338)
++++ .+||.++|+ ||..|.+.+-+ .+..++ .-..++++++| +.|+.+.+.+
T Consensus 177 l~~t~~~iA~~lg~-----sr~tvsR~l~~-L~~~gi-~~~~~~i~I~d~~~L~~~~~~~ 229 (237)
T 3fx3_A 177 LPYDKMLIAGRLGM-----KPESLSRAFSR-LKAAGV-TVKRNHAEIEDIALLRDYAESD 229 (237)
T ss_dssp CCSCTHHHHHHTTC-----CHHHHHHHHHH-HGGGTE-ECCTTEEEESCHHHHHHHHCC-
T ss_pred ecCCHHHHHHHhCC-----CHHHHHHHHHH-HHHCCe-EeeCCEEEEcCHHHHHHHhcCC
Confidence 3343 589999994 56665555544 555568 56677788888 6888887754
No 54
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=22.78 E-value=40 Score=26.86 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=41.8
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 155 GVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 155 G~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
+...| |.+|...|.++|.+.-- |..|..|..-+|.|++.+.+|.-.|...|.
T Consensus 23 ~~~~M-~~ei~~~v~~il~e~l~--------I~~d~~l~~dLGlDSLd~veLi~~LEe~Fg 74 (113)
T 2cgq_A 23 FQGAM-EEAINATIQRILRTDRG--------ITANQVLVDDLGFDSLKLFQLITELEDEFD 74 (113)
T ss_dssp ---CH-HHHHHHHHHHHHTCCSC--------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHT
T ss_pred hcccc-HHHHHHHHHHHHHHHhC--------CCCCCchhhhcCCCHHHHHHHHHHHHHHhC
Confidence 33356 89999999999987542 778888878899999999999999988774
No 55
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=22.72 E-value=62 Score=25.16 Aligned_cols=52 Identities=13% Similarity=0.007 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCccccchHHH-----hhhcCCccchhcHHHHHhccc
Q 019644 280 LPRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLK-----ELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 280 ~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk-----~lf~~d~i~~~~l~klL~~H~ 335 (338)
+++.+|...|.++|.+.- .+ ...|..|..|. .=+|.||+.+.+|.-.|..+|
T Consensus 15 ~~~~~i~~~i~~il~e~l-~~---~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~f 71 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFL-QK---GEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIF 71 (107)
T ss_dssp TCHHHHHHHHHHHHHTTB-CT---TCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-CC---ccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHH
Confidence 689999999999998763 23 34688888886 557899999988888887765
No 56
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=22.49 E-value=62 Score=24.88 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 157 TELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 157 ~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
..|.|.++...|+++|.+.--.++ ..|..|..| .-+|.|++.+.+|.-.|...|.
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLGlDSL~~veL~~~LE~~fg 65 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELGFDSIDVIDLVMFFEDEFA 65 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcCCchHHHHHHHHHHHHHHC
Confidence 468899999999999988643343 368889999 6789999999999999988774
No 57
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=22.37 E-value=62 Score=25.16 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCC
Q 019644 158 ELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (338)
Q Consensus 158 ~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~ 215 (338)
.|++.+|...|..+|.+.--.++ ..|-.|..|..-+|.|++.+.+|.-.|..+|.
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fg 56 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYG 56 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHHC
Confidence 37888998888888887532233 46788888876789999999999999999884
No 58
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=22.26 E-value=1.1e+02 Score=21.06 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=18.7
Q ss_pred CCccHHHHHHHHHHHhCCCCchh
Q 019644 21 NTTTTGIVRRQLEKDFGVDLTDK 43 (338)
Q Consensus 21 ~~vT~k~VR~~Le~~~gvdLs~k 43 (338)
+.+..-.++..|++.||+++...
T Consensus 34 DSl~~~~l~~~le~~~gi~i~~~ 56 (77)
T 2ehs_A 34 DSLDVVELIMAFEEEFGIEIPDE 56 (77)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CHHHHHHHHHHHHHHhCCccCHH
Confidence 45555689999999999998765
No 59
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=22.19 E-value=1.1e+02 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=18.0
Q ss_pred CCccHHHHHHHHHHHhCCCCchh
Q 019644 21 NTTTTGIVRRQLEKDFGVDLTDK 43 (338)
Q Consensus 21 ~~vT~k~VR~~Le~~~gvdLs~k 43 (338)
+++..-.++..||+.||+++...
T Consensus 36 DSl~~~el~~~le~~fgi~i~~~ 58 (78)
T 1l0i_A 36 DSLDTVELVMALEEEFDTEIPDE 58 (78)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCHH
Confidence 34445589999999999998764
No 60
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=22.05 E-value=54 Score=23.50 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCccccchHHHhhhcCCccchhcHHHHHhccc
Q 019644 281 PRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLVVHF 335 (338)
Q Consensus 281 sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD~kLk~lf~~d~i~~~~l~klL~~H~ 335 (338)
++.++...|.+.|.+.-=.+ ...|..|..|..-+|.|++.+.+|.-.|..+|
T Consensus 2 ~~~~i~~~l~~ii~~~l~~~---~~~i~~d~~l~~dlg~DSl~~vel~~~le~~f 53 (81)
T 3gzm_A 2 SLKSTFDDIKKIISKQLSVE---EDKIQMNSNFTKDLGADSLDLVELIMALEEKF 53 (81)
T ss_dssp CHHHHHHHHHHHHHHHHTCC---GGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcC---HHHCCCCCcchhhcCCCHHHHHHHHHHHHHHH
Confidence 57788888888877653223 34688898887778999999888888777655
No 61
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=21.74 E-value=42 Score=28.90 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=36.5
Q ss_pred cccCCH-HHHhhhCCCcccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhHhhhhCC
Q 019644 143 LCALSP-QLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGV 198 (338)
Q Consensus 143 ~~~lSp-~La~~lG~~~~sR~~vvk~lW~YIk~~~Lqdp~~kr~I~cD-e~Lk~lf~~ 198 (338)
...++- +||.++|.+..+=+. +..-.+..++-.-..++.++.| +.|+.+.+.
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR----~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~~ 228 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSR----VLASLKRENILDKKKNKIIVYNLGELKHLSEQ 228 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHH----HHHHHHHTTSEEECSSEEEESCHHHHHHHHTS
T ss_pred cCCCCHHHHHHHhCCcHHHHHH----HHHHHHHCCCeEeCCCEEEEecHHHHHHHHcc
Confidence 344554 899999986544333 3455677788888888888888 778887764
No 62
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.33 E-value=1.3e+02 Score=25.38 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=33.1
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 019644 10 RLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFL 55 (338)
Q Consensus 10 ~i~~IL~~aDl~~vT~k~VR~~Le~~~gvdLs~kK~~I~~~I~~~l 55 (338)
.|.+....-.|..+|+..+|..|... |+..+.+|+. +|+.+.
T Consensus 51 ~i~~l~~~g~L~kltV~eLK~~l~~~-gL~~~GkKad---LI~Ri~ 92 (151)
T 1jjr_A 51 ELKTHISKGTLGKFTVPMLKEACRAY-GLKSGLKKQE---LLEALT 92 (151)
T ss_dssp HHHHHHHHTCTTSSCHHHHHHHHHHH-TCCCCSSSHH---HHHHHH
T ss_pred HHHHHHHcCcHHhccHHHHHHHHHHc-CCCCcccHHH---HHHHHH
Confidence 45556789999999999999999886 9888889875 444443
No 63
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=20.13 E-value=84 Score=25.86 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=35.2
Q ss_pred cccc-HHHHHHhCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hHHHhhhcC
Q 019644 263 LQLS-DALIKFLGTGESALPRSDVIKRMWDYIKEKNLQDPSDKRRIICD-EKLKELFDV 319 (338)
Q Consensus 263 ~~lS-~~La~flG~~~~~~sr~~v~k~lW~YIk~n~Lqdp~~kr~I~cD-~kLk~lf~~ 319 (338)
+.+| .+||.++|+ ||..|. ++..-.+..++-.-..++++++| +.|+.+.+.
T Consensus 145 ~~~t~~~lA~~lg~-----sr~tvs-R~l~~L~~~g~I~~~~~~i~i~d~~~L~~~~~~ 197 (202)
T 2zcw_A 145 LKATHDELAAAVGS-----VRETVT-KVIGELAREGYIRSGYGKIQLLDLKGLKELAES 197 (202)
T ss_dssp EECCHHHHHHHHTC-----CHHHHH-HHHHHHHHTTSEEEETTEEEESCHHHHHHHHTS
T ss_pred cCCCHHHHHHHhCC-----CHHHHH-HHHHHHHHCCCEEeCCCEEEEeCHHHHHHHhcc
Confidence 4455 479999994 454444 44455677777777778888888 578877653
No 64
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=20.12 E-value=76 Score=24.76 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCccccchhHhhhhCCCccChhhHHHHHhccCCC
Q 019644 165 VKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWP 216 (338)
Q Consensus 165 vk~lW~YIk~~~Lqdp~~kr~I~cDe~Lk~lf~~~~~~~~~m~k~L~~Hl~p 216 (338)
+..||.|.+.++|+-|. .++=-+|...+.+||.-
T Consensus 29 ~~tLrrY~r~y~L~~~~------------------~~sK~qLa~aV~kHF~s 62 (94)
T 2ld7_A 29 VNTLRRYKRHFKLPTRP------------------GLNKAQLVEIVGCHFKS 62 (94)
T ss_dssp HHHHHHHHHHTTCCCCS------------------SCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCC------------------CCCHHHHHHHHHHHHHc
Confidence 35789999999996655 35666899999999953
Done!